Citrus Sinensis ID: 011463
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNL2 | 472 | Pentatricopeptide repeat- | yes | no | 0.967 | 0.993 | 0.659 | 0.0 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.851 | 0.547 | 0.356 | 1e-65 | |
| O49436 | 660 | Pentatricopeptide repeat- | no | no | 0.855 | 0.628 | 0.340 | 6e-62 | |
| Q9M302 | 659 | Pentatricopeptide repeat- | no | no | 0.923 | 0.679 | 0.304 | 3e-61 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.756 | 0.491 | 0.335 | 1e-60 | |
| Q9SFV9 | 880 | Pentatricopeptide repeat- | no | no | 0.855 | 0.471 | 0.319 | 1e-58 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.929 | 0.617 | 0.286 | 4e-58 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.878 | 0.558 | 0.299 | 1e-57 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.892 | 0.699 | 0.282 | 3e-57 | |
| Q9FFE3 | 535 | Pentatricopeptide repeat- | no | no | 0.946 | 0.857 | 0.276 | 1e-56 |
| >sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/470 (65%), Positives = 386/470 (82%), Gaps = 1/470 (0%)
Query: 1 MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
MG K M FKWS IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F M+ +
Sbjct: 1 MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60
Query: 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
LVSAN+F+ AEDL+ R+ E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61 LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120
Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180
Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM K C+PTVVTYTSLINGLC S
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240
Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
K+V+EAMR EEM+SKG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++ RPN+VTY
Sbjct: 241 KNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300
Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
+TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC I K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360
Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GGITPNRLTW++H++ N VV+GLC P+RAF +YLSMR+R ISV+ T SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
KG+ K+ ++VDE+V DGC+P +GTW ++ D+ + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDL 470
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/423 (35%), Positives = 233/423 (55%), Gaps = 10/423 (2%)
Query: 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104
G + D STF+++I L A+Q RPA +L+ + E F ++ +GY A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLIK 163
+R+ ++M EFGC + S ++ +E +++ A F + M + G P + N L+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
LCK +G + A +I M G PD YTY ++I+GLC+LG++ EA E+ +M T+ CS
Sbjct: 304 GLCK-AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
P VTY +LI+ LC+ VEEA L + SKG+ P+V T++SL+ GLC AMEL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
+ M SK P+ TY+ L++ LC +GKL EA+ +L +M+L G Y +I FC
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRS 402
K +EA DEM + G++ N +T+ NT++ GLCK+ A Q+ M
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTY-------NTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
D TY+SL+T FC+ GDI K+A IV + +GC PD T+ +++ L ++ A+
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Query: 463 ELL 465
+LL
Sbjct: 596 KLL 598
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 231/429 (53%), Gaps = 14/429 (3%)
Query: 39 TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98
+A F+ +ST S MI ++ F E LL R+ E I E F+ + R YG+
Sbjct: 66 SAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKA 125
Query: 99 HRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGIQP 153
H P A+ +F +M EF C+ + KS+ +VL +++ E FY ++ + I P
Sbjct: 126 HLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185
Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
S N++IKALCK +D A ++FR MP R C PD YTY TL++GLC+ +I EA L
Sbjct: 186 NGLSFNLVIKALCKLR-FVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
EM+++ CSP+ V Y LI+GLC+ + +L + M KG PN TY++L+ GLC
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
G +A+ LL+ M+S + PN VTY TL+NGL K+ + +AV +L M+ +G + +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364
Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392
Y +IS GK +EA + +M G PN I +++ +V GLC+ PN A
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN-------IVVYSVLVDGLCREGKPNEAK 417
Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
++ M ++ TYSSL+ F K G ++ ++ E+ GC ++ +S ++ L
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 453 WDRRKMRQA 461
++++A
Sbjct: 478 CGVGRVKEA 486
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 244/466 (52%), Gaps = 18/466 (3%)
Query: 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAE 70
+I V++ +R E V AL F S +N F+H TF +MI KL Q +
Sbjct: 39 AEIKELDVVKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQVDSVQ 96
Query: 71 DLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130
LL ++ + +ED+F+S+ Y +V A+ +F ++KEFGC+P+ K Y VL L
Sbjct: 97 YLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTL 156
Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
+ EN++++ + YR M+ G +P V + NVL+KALCKN+ +D A K+ EM N+GC PD
Sbjct: 157 LGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNN-KVDGAKKLLVEMSNKGCCPD 215
Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
+ +Y T+I+ +C +G + E +EL + E P V Y +LINGLC+ + A L
Sbjct: 216 AVSYTTVISSMCEVGLVKEGRELAERFE-----PVVSVYNALINGLCKEHDYKGAFELMR 270
Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
EM KG+ PNV +YS+L++ LC G A L M+ + PNI T S+L+ G G
Sbjct: 271 EMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRG 330
Query: 311 KLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
+A+++ ++M + GL+P+ Y ++ FC G +A + M G +PN
Sbjct: 331 TTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN---- 386
Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
IR + +++ G K + A ++ M + + Y++++ C+ ++
Sbjct: 387 ---IRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAES 443
Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL-LLELMNKC 473
+++ + + C P T++A + L D ++ A ++ +E ++C
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC 489
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 126/376 (33%), Positives = 212/376 (56%), Gaps = 9/376 (2%)
Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
A+ +FDKM+ GC P +Y T++ + ++ F+ R M G++P + S NV+I
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
LC+ + +F + EM RG + D TY TLI G C+ G ++A + EM +
Sbjct: 284 GLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
P+V+TYTSLI+ +C++ ++ AM ++MR +G+ PN TY++L+DG + G ++A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
L+ M P++VTY+ L+NG C GK+++A+ +L+ MK +GL PD Y ++S FC
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR-AFQVYLSMRNRS 402
EA EMV GI P+ +T+S +++QG C+ + A +Y M
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYS-------SLIQGFCEQRRTKEACDLYEEMLRVG 515
Query: 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462
+ D TY++LI +C +GD+ K+ ++ +E+V G LPD T+S ++ L + + R+A
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAK 575
Query: 463 ELLLLELMNKCVEAEV 478
LLL + V ++V
Sbjct: 576 RLLLKLFYEESVPSDV 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 147/460 (31%), Positives = 230/460 (50%), Gaps = 45/460 (9%)
Query: 43 ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
A+GF + +++ L AE + ++ K + I S+ G+ R
Sbjct: 188 ADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLR 247
Query: 103 DAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161
DA++VFD M KE C P SY ++ L E +L+ AF M E G QP + VL
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307
Query: 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221
IKALC + G +D AF +F EM RGC P+ +TY LI+GLCR GKI EA + ++M
Sbjct: 308 IKALC-DRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR 366
Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281
P+V+TY +LING C+ V A L M + +PNV T++ LM+GLC+ G +A+
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426
Query: 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341
LL+ M+ P+IV+Y+ L++GLC+EG + A ++L M ++PD + II+ F
Sbjct: 427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486
Query: 342 CDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNR----------- 390
C GK A+ FL M+ GI+ + +T + T++ G+CK R
Sbjct: 487 CKQGKADVASAFLGLMLRKGISLDEVTGT-------TLIDGVCKVGKTRDALFILETLVK 539
Query: 391 --------AFQVYLSMRNRSISVDS-----------------LTYSSLITCFCKKGDIHK 425
+ V L M ++ V +TY++L+ + GDI
Sbjct: 540 MRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599
Query: 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
S RI++ + L GCLP+ ++ ++ L ++ +A +LL
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL 639
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 148/516 (28%), Positives = 251/516 (48%), Gaps = 65/516 (12%)
Query: 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
KIT Q+ +L+ +V+ ++ +F ++ NG+RH + ++I KL + +F+ +
Sbjct: 75 KITPFQLYKLLELPLNVSTSMELFSWTGSQ--NGYRHSFDVYQVLIGKLGANGEFKTIDR 132
Query: 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAIL 130
LL ++ E E +F+SI R Y + P R+ +M+ + CEPT KSY VL IL
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192
Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
V N K+A + M I P + + V++KA C +D+A + R+M GC P+
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCA-VNEIDSALSLLRDMTKHGCVPN 251
Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
S Y TLI+ L + ++ EA +L +EM C P T+ +I GLC+ + EA ++
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 311
Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL-------------------------- 284
M +G P+ TY LM+GLCK G A +L
Sbjct: 312 RMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDD 371
Query: 285 ------QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
M+ S P++ TY++L+ G KEG + A+E+L M+ +G KP+ Y ++
Sbjct: 372 AKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILV 431
Query: 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI-------RI---------------- 375
FC +GK EA N L+EM G+ PN + ++ I RI
Sbjct: 432 DGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCK 491
Query: 376 -----HNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
N+++ GLC+ D A + M + + +++TY++LI F ++G+I ++ ++
Sbjct: 492 PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKL 551
Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
V+E+V G DE T+++++ L ++ +A L
Sbjct: 552 VNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLF 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/438 (29%), Positives = 233/438 (53%), Gaps = 12/438 (2%)
Query: 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL-DR 75
V +I+ +KD KAL +F+S E GF+H ST+ +I KL +F E++L D
Sbjct: 9 HVTAVIKCQKDPMKALEMFNSMRKEV--GFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66
Query: 76 VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135
+ E +++ + YGR + +A+ VF++M + CEPT SY ++++LV+
Sbjct: 67 RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGY 126
Query: 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
A + Y MR+ GI P V S + +K+ CK S AA ++ M ++GC + Y
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRP-HAALRLLNNMSSQGCEMNVVAYC 185
Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255
T++ G E ELF +M S + T+ L+ LC+ V+E +L +++ +
Sbjct: 186 TVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKR 245
Query: 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315
GV PN+FTY+ + GLC+ G A+ ++ +I + +P+++TY+ L+ GLCK K QEA
Sbjct: 246 GVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEA 305
Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375
L +M +GL+PD+ Y +I+ +C G Q A + + V G P++ T+
Sbjct: 306 EVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYR----- 360
Query: 376 HNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434
+++ GLC + + NRA ++ + I + + Y++LI +G I ++A++ +E+
Sbjct: 361 --SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418
Query: 435 LDGCLPDEGTWSAVMTAL 452
G +P+ T++ ++ L
Sbjct: 419 EKGLIPEVQTFNILVNGL 436
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 233/467 (49%), Gaps = 34/467 (7%)
Query: 30 KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV--NKEKCDITEDI 87
K L F + G+ D TFS +++ + A L+DR+ K++ D+
Sbjct: 120 KLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT-- 177
Query: 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
++ G R +A+ + D+M E+G +P +Y VL L + LA +R M
Sbjct: 178 VSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237
Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
E I+ V +++I +LCK+ G+ D A +F EM +G D TY +LI GLC GK
Sbjct: 238 ERNIKASVVQYSIVIDSLCKD-GSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296
Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267
+ ++ +EM + P VVT+++LI+ + + EA L+ EM ++G+ P+ TY+SL
Sbjct: 297 DDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSL 356
Query: 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
+DG CK C +A ++ +M+SK P+IVTYS L+N CK ++ + + + + +GL
Sbjct: 357 IDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416
Query: 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW------------------ 369
P+ Y ++ FC GK A EMV G+ P+ +T+
Sbjct: 417 IPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALE 476
Query: 370 ----------SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFC 418
+L I I+N ++ G+C + A+ ++ S+ ++ + D +TY+ +I C
Sbjct: 477 IFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLC 536
Query: 419 KKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465
KKG + ++ + ++ DGC PD+ T++ ++ A + + EL+
Sbjct: 537 KKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELI 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/473 (27%), Positives = 243/473 (51%), Gaps = 14/473 (2%)
Query: 9 WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
W ++ +++ +I +++++ AL IF A + GF H+ T+ ++ KL A F P
Sbjct: 43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRARAFDP 101
Query: 69 AEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126
E L+ + I E++F+ + R YG R +MR+F ++ +FG + + +S T+
Sbjct: 102 VESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTL 161
Query: 127 LAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185
L +L++ + L +++ +E GI P + + N+L+KALCK + +++A+K+ E+P+
Sbjct: 162 LNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKN-DIESAYKVLDEIPSM 220
Query: 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
G P+ TY T++ G G + AK + +EM + P TYT L++G C+ EA
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEA 280
Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
+ ++M +EPN TY ++ LCK S +A + M+ + P+ +++
Sbjct: 281 ATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDA 340
Query: 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365
LC++ K+ EA + +M PD L +I C G+ EA DE G I P+
Sbjct: 341 LCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI-PS 399
Query: 366 RLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH 424
LT +NT++ G+C K + A +++ M R ++ TY+ LI K G++
Sbjct: 400 LLT-------YNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVK 452
Query: 425 KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
+ R+++E++ GC P++ T+ + L K A +++ + +MN V+ E
Sbjct: 453 EGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKE 505
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| 225464138 | 503 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.934 | 0.774 | 0.0 | |
| 147828617 | 477 | hypothetical protein VITISV_008668 [Viti | 0.983 | 1.0 | 0.758 | 0.0 | |
| 224125420 | 478 | predicted protein [Populus trichocarpa] | 0.979 | 0.993 | 0.705 | 0.0 | |
| 356549285 | 479 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.995 | 0.694 | 0.0 | |
| 124360736 | 479 | Pentatricopeptide repeat [Medicago trunc | 0.983 | 0.995 | 0.665 | 0.0 | |
| 449457845 | 501 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.940 | 0.663 | 0.0 | |
| 15237375 | 472 | pentatricopeptide repeat-containing prot | 0.967 | 0.993 | 0.659 | 0.0 | |
| 297791089 | 472 | pentatricopeptide repeat-containing prot | 0.967 | 0.993 | 0.655 | 0.0 | |
| 357135887 | 476 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.953 | 0.437 | 1e-109 | |
| 326525168 | 500 | predicted protein [Hordeum vulgare subsp | 0.936 | 0.908 | 0.438 | 1e-109 |
| >gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100 [Vitis vinifera] gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/470 (77%), Positives = 418/470 (88%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
MG KT+ KWS +I SAQV QLI+AE+D+ KA+VIFDSATAEY NGFRH + TFSLMIS+L
Sbjct: 1 MGSKTVIKWSKQIGSAQVAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRL 60
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
VSAN FR AE+LL R+ +EKC+ITEDIFLSICR YGRVH+PLDA+RVF KMKE+ CEP+
Sbjct: 61 VSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQ 120
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
KSYITV AILV ENQLKLA RFYR+MRE+GI P VASLNVLIKALCKNSGTMDAA +IFR
Sbjct: 121 KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
EMPNRGC PDSYTYGTLINGLCRLGKI EAKELFKEMETKACSPTVVTYTSLI+GLCQSK
Sbjct: 181 EMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSK 240
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
++ A+RL EEM SKG++PNVFTYSSLMDG CK GCSS+A+ELL MM+S+RH PN++TYS
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYS 300
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TL++GLCKEGKLQEAVEILDRMKLQGL+PDAGLYGKIIS FCDI K+ EAANFLDEMVLG
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
GI+PNRLTWSLH+RIHN VVQGLC PNRAFQ+YLSMR R IS+D+ T+ SL+ FC K
Sbjct: 361 GISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420
Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470
GD+HK+A +VDE+VLDGC+PDE TW+AV+ A WDRRK+R++AEL+ +ELM
Sbjct: 421 GDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQVELM 470
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/477 (75%), Positives = 417/477 (87%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
MG KT+ KWS +I SAQV QLI+AE+D+ KA+VIFDSATAEY NGFRH + TFSLMIS+L
Sbjct: 1 MGSKTVIKWSKQIGSAQVAQLIKAERDIQKAIVIFDSATAEYTNGFRHSHQTFSLMISRL 60
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
VSAN FR AE+LL R+ +EKC+ITEDIFLSICR YGRVH+PLDA+RVF KMKE+ CEP+
Sbjct: 61 VSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMKEYECEPSQ 120
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
KSYITV AILV ENQLKLA RFYR+MRE+GI P VASLNVLIKALCKNSGTMDAA +IFR
Sbjct: 121 KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALCKNSGTMDAALRIFR 180
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
EMPNRGC P SYTYGTLI GLCRLGKI EAKELFKEMETKACSPTVVTY SLI+GLCQSK
Sbjct: 181 EMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMETKACSPTVVTYXSLIHGLCQSK 240
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
++ A+RL EEM SKG++PNVFTYSSLMDG CK GCSS+A+ELL MM+S+RH PN++TYS
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRHLPNMITYS 300
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TL++GLCKEGKLQEAVEILDRMKLQGL+PDAGLYGKIIS FCDI K+ EAANFLDEMVLG
Sbjct: 301 TLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLG 360
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
GI+PNRLTWSLH+RIHN VVQGLC PNRAFQ+YLSMR R IS+D+ T+ SL+ FC K
Sbjct: 361 GISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNK 420
Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
GD+HK+A +VDE+VLDGC+PDE TW+AV+ A WDRRK+R++AEL+ +ELM + E
Sbjct: 421 GDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELVQVELMGTFLNLE 477
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa] gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/476 (70%), Positives = 418/476 (87%), Gaps = 1/476 (0%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
MG+KT+ KWS +IT ++V QL+RAE+D+ KA +IFDSA+AEY+NGFRHD++TF +MISKL
Sbjct: 1 MGMKTLLKWSKQITPSKVEQLLRAERDLRKAKIIFDSASAEYSNGFRHDHTTFGVMISKL 60
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
VSAN+FRPAE++L+R+ +EKC ITE+IFLSICRGYGRVH PLDA+RVF KM +FGC+PT
Sbjct: 61 VSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPLDAIRVFHKMNDFGCKPTD 120
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
KSYI+V AILVEENQLK+A FY++MRE+G++ V SLNVLIKALCKNSGT+DAAF+IFR
Sbjct: 121 KSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFEIFR 180
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
EMP RGC PDSYTYGTLINGLC+LGK +EAKELFKEM+TK CSP+VVTY+ L++GLCQ+
Sbjct: 181 EMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAG 240
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
+V+EAM LF++M+ K +EPNVFTYSSLMDGLCK G S +AMELL+MM+ KRH+PN+VTYS
Sbjct: 241 NVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYS 300
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TL+NGLCKEGKL EAVE LDRMKLQGLKPDAGLYGKII+ FC+I K+QEAA +LDEMVLG
Sbjct: 301 TLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLG 360
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
I+PNR+TWSLH++++N VVQGLC + NR+FQ+Y+ MR R IS+D+ T+ SL+ CFCK
Sbjct: 361 QISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475
KGD+HK+ARI DE+VLDGC+PD G WSAV+ WDRRK+R+A E +++ELMN+ VE
Sbjct: 421 KGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRRKVREAFESIVVELMNEFVE 476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/478 (69%), Positives = 401/478 (83%), Gaps = 1/478 (0%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
MG KT+FKW +IT++ V+QLI+AEKDV+KA+ +FDSATAEY NGFRHD+ TF L+IS+L
Sbjct: 1 MGSKTLFKWPKQITNSLVVQLIKAEKDVHKAVNMFDSATAEYGNGFRHDHETFGLIISRL 60
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
V+ NQFRPAE +L+R+ +EKC +TEDIFLSICRGYGRVHRPLDA+RVF KM+ F PT
Sbjct: 61 VTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAIRVFHKMEGFQLRPTQ 120
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
K+Y+T+L ILVEEN +K A FYR MRE+GI V SLN+LIKALCKN T+D+A +IF+
Sbjct: 121 KAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSALRIFQ 180
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
EMPNRGC PDSYTYGTLINGLCRLG I EAKELFKEME K S +VVTYTSLI+GLCQS
Sbjct: 181 EMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTYTSLIHGLCQSN 240
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
+++EA+ L EEM+ +EPNVFTYSSLMDGLCKGG SSQAM+LL++M K H PN+VTYS
Sbjct: 241 NLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYS 300
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TL+NGLCKE KL+EAVEILDRM++QGLKP+AGLYGKIIS C G YQEAANF+DEMVLG
Sbjct: 301 TLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLG 360
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GI+PNR +WSLH+R+HN VVQGLC DP RAFQ+YLSMR R ISV+ T+ L+ CFCK
Sbjct: 361 GISPNRASWSLHVRMHNMVVQGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
+GD+HK+ARI++E+VLDGC+PDEG W+ V+ LWDR+K+R+A E LL+EL K VEAE
Sbjct: 421 RGDLHKAARILEEMVLDGCIPDEGVWNVVIGGLWDRKKVREATEQLLVELQQKFVEAE 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/478 (66%), Positives = 396/478 (82%), Gaps = 1/478 (0%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
M KT+FKW +IT++ V QLI+AEKD+NK LV+FDSAT EY+NGFRHD++TF MI +L
Sbjct: 1 MASKTLFKWPKQITNSLVEQLIKAEKDINKTLVMFDSATEEYSNGFRHDHNTFGAMIHRL 60
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
VS NQFRPAE +L+R+ +E C++TED+FL+ICRGYGRVHRPLDA+RVF KM++F +PT
Sbjct: 61 VSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQ 120
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
KSY+TV ILVEEN +K A FY+ MRE GI P V SLN+LIKALCKN T+++AF++FR
Sbjct: 121 KSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFR 180
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
EMPNRGC PDSYTYGTLINGLC+LGKI +AKEL EME K SP+VV+YTSLI+GLCQS
Sbjct: 181 EMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSN 240
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
+++EA+ L EEM G+EPNVFTYSSLMDGLCK G SSQAMELL++M+ +R PN+VTYS
Sbjct: 241 NLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYS 300
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TL+NGLCKEGK +EAVEILDRM+LQGLKPDAG+YG+IIS C YQEAANF+DEM LG
Sbjct: 301 TLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALG 360
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GI+PNR +W+ H+++HN VVQGLC DP RAFQ+YLSMR R ISV+ T+ L+ CFCK
Sbjct: 361 GISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
+GD++K+ARI++E++LDGC+PDEG W+ +M LWDR+K+R+ ELL+ EL K VEAE
Sbjct: 421 RGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELLVAELKQKFVEAE 478
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Cucumis sativus] gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/472 (66%), Positives = 383/472 (81%), Gaps = 1/472 (0%)
Query: 1 MGVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKL 60
MG K MFKW+ +T V QLI+AE+D+ KAL+IFDSATAEYANGF+HD +TFSLMISKL
Sbjct: 30 MGSKAMFKWAKTVTPTHVQQLIQAERDIKKALIIFDSATAEYANGFKHDLNTFSLMISKL 89
Query: 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP 120
+SANQFR AE LLDR+ +EK D+TEDI LSICR YGR+H+PLD++RVF KM++F C+PT
Sbjct: 90 ISANQFRLAETLLDRMKEEKIDVTEDILLSICRAYGRIHKPLDSIRVFHKMQDFHCKPTE 149
Query: 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180
KSYI+VLAILVEENQLK AFRFYR MR++GI P V SLNVLIKA CKNSGTMD A +FR
Sbjct: 150 KSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFR 209
Query: 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240
M N GC PDSYTYGTLINGLCR I EAKEL +EMETK CSP+VVTYTS+I+GLCQ
Sbjct: 210 TMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLN 269
Query: 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300
+V+EAMRL E+M+ K +EPNVFTYSSLMDG CK G SS+A ++L++MI KR RPN+++YS
Sbjct: 270 NVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYS 329
Query: 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
TLLNGLC EGK+ EA+EI DRMKLQG KPDAGLYGKI++C CD+ ++QEAANFLDEMVL
Sbjct: 330 TLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQEAANFLDEMVLC 389
Query: 361 GITPNRLTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GI PNR+TWSLH+R HN V+ GLC + NRAFQ+YLS+ R IS+ T++SL+ CFC
Sbjct: 390 GIKPNRITWSLHVRTHNRVIHGLCTINNSNRAFQLYLSVLTRGISITVDTFNSLLKCFCN 449
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471
K D+ K++RI+DE+V++GC+P WS ++ D RK A +LL L+LM+
Sbjct: 450 KKDLPKTSRILDEMVINGCIPQGEMWSTMVNCFCDERKACDAMKLLQLQLMD 501
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana] gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/470 (65%), Positives = 386/470 (82%), Gaps = 1/470 (0%)
Query: 1 MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
MG K M FKWS IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F M+ +
Sbjct: 1 MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60
Query: 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
LVSAN+F+ AEDL+ R+ E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61 LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120
Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180
Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM K C+PTVVTYTSLINGLC S
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240
Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
K+V+EAMR EEM+SKG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++ RPN+VTY
Sbjct: 241 KNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300
Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
+TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC I K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360
Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GGITPNRLTW++H++ N VV+GLC P+RAF +YLSMR+R ISV+ T SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
KG+ K+ ++VDE+V DGC+P +GTW ++ D+ + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDL 470
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 386/470 (82%), Gaps = 1/470 (0%)
Query: 1 MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
MG K M FKWS IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F M+S+
Sbjct: 1 MGSKMMMFKWSKNITPSQVIKLMRAEKDVEKSIAVFDSATAEYANGYLHDQSSFGYMVSR 60
Query: 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
LVSAN+F+ AED++ R+ E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61 LVSANKFKAAEDIVARMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120
Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180
Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM K C+PTVVTYTSLINGLC S
Sbjct: 181 HEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240
Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
K+V+EAMR EEM+ KG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++ RPN+VTY
Sbjct: 241 KNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300
Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
+TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC + K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMIL 360
Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GGITPNRLTW++H++ N VV+GLC P+RAF +YLSMR+R ISV+ T SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
KG+ K+ ++VDE+V DGC+P++GTW ++ D + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPNKGTWKLLIGHTLDNTIVGEASDSLLRDL 470
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 295/466 (63%), Gaps = 12/466 (2%)
Query: 5 TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSA 63
T KW +T+ + +L+RAE+D +AL +FD+ATA + T SL+ S+L SA
Sbjct: 7 TPAKWPKTLTAGHLHRLVRAERDPRRALALFDAATAASVSAPILPSPDTVSLLTSRLASA 66
Query: 64 NQFRPAEDLLDRVN---KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEP-T 119
A LL R D+ E FL++ R + R HRPL A+++F P +
Sbjct: 67 GLLPLATSLLSRSRALFPSAADL-EPPFLTLLRAFSRTHRPLAALQLFRSAPSALALPHS 125
Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN-SGTMDAAFKI 178
+SY VLA LV + L LA MR G P A+ NVL+KA C + S ++ A ++
Sbjct: 126 ARSYTAVLATLVSHSHLPLAHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRL 185
Query: 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
FR +P PD+ +Y T+I+GLCR + +A+E+F EM +PTVVTYT++IN L +
Sbjct: 186 FRNIPK----PDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLAR 241
Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
+++A+++F+EM G+ PNV TYSSL+DGLCKGG ++ A+ELL M + PN +T
Sbjct: 242 DGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTIT 301
Query: 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
YS+++NGLCKE +L EA+E+LDRM+LQG KPDAGL+GK+I C G+ EAAN+LDEMV
Sbjct: 302 YSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMV 361
Query: 359 LGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417
L G+ PNR+TWSLH+RI++ VV LC K + R F+VY SMR R IS + T+ L+ F
Sbjct: 362 LSGVEPNRVTWSLHVRINDAVVTALCAKGEAGRTFRVYQSMRTRGISTEPGTFHLLVEFF 421
Query: 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
KK D+ K+A +V +++ + C+P+ TW ++T W ++K+RQ AE
Sbjct: 422 SKKNDLEKAAHVVLDMLSEKCIPERETWDIILTRYWSKKKVRQEAE 467
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/470 (43%), Positives = 295/470 (62%), Gaps = 16/470 (3%)
Query: 5 TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATA-----EYANGFRHDNSTFSLMISK 59
T KW +T+ + +L+R E+D +AL +FD+ATA T SL+ S+
Sbjct: 27 TPTKWPKNLTAEHLHRLVRGERDPRRALALFDAATAAPVSTSVPTQILPSPDTVSLLTSR 86
Query: 60 LVSANQFRPAEDLLDRVN---KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116
L SA A LL R D+ E FL++ R + R HRPLDA+++F
Sbjct: 87 LASAGLLPLATSLLSRSRALFPSNADL-EPPFLTLLRAFCRTHRPLDALQLFRSAPSALS 145
Query: 117 EP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDA 174
P + +SY VLA LV + L LA MR G P A+ NVL+KA C ++ +D
Sbjct: 146 LPHSARSYTAVLAGLVAHSHLPLAHSLLADMRASGFGPTTATYNVLLKAHCSDAAAHIDD 205
Query: 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN 234
A ++FR +P PD+ +Y TLI+GLCR + EA+ELF EM +PTVVTYT++IN
Sbjct: 206 AVRLFRNIPK----PDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTIIN 261
Query: 235 GLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294
L + +++A+ +F+EM +G+ PNV TYSSL+DGLCKGG ++ A++LL+ + + P
Sbjct: 262 WLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLP 321
Query: 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354
N + YS+++NGLCKEG L+EA+E+LDRM+LQG KPDAGL+GK+I CD G+ EAAN+L
Sbjct: 322 NTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYL 381
Query: 355 DEMVLGGITPNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSL 413
DEMVL G+ PNR+TWSLH+RI+ VV LC K + RAFQVY SMR R IS + T+ L
Sbjct: 382 DEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQVYQSMRTRGISTEPSTFHLL 441
Query: 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAE 463
+ F KK + K+A +V +++ + C+P+ TW +++ W ++K+RQ AE
Sbjct: 442 VEFFSKKNHLEKAAHVVLDMLSERCIPERETWDVIVSGYWSKKKVRQEAE 491
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| TAIR|locus:2161408 | 472 | AT5G46100 "AT5G46100" [Arabido | 0.967 | 0.993 | 0.659 | 6.2e-172 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.849 | 0.546 | 0.360 | 1.4e-62 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.921 | 0.678 | 0.305 | 3.5e-59 | |
| TAIR|locus:2119747 | 660 | EMB1025 "embryo defective 1025 | 0.855 | 0.628 | 0.340 | 4.5e-59 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.907 | 0.589 | 0.306 | 1.7e-57 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.876 | 0.557 | 0.299 | 5.3e-56 | |
| TAIR|locus:2171352 | 535 | AT5G16420 "AT5G16420" [Arabido | 0.942 | 0.854 | 0.282 | 2.3e-55 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.940 | 0.624 | 0.295 | 1e-52 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.855 | 0.659 | 0.316 | 1e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.814 | 0.660 | 0.301 | 1.3e-52 |
| TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1671 (593.3 bits), Expect = 6.2e-172, P = 6.2e-172
Identities = 310/470 (65%), Positives = 386/470 (82%)
Query: 1 MGVKTM-FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISK 59
MG K M FKWS IT +QV++L+RAEKDV K++ +FDSATAEYANG+ HD S+F M+ +
Sbjct: 1 MGSKVMMFKWSKNITPSQVIKLMRAEKDVEKSMAVFDSATAEYANGYVHDQSSFGYMVLR 60
Query: 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT 119
LVSAN+F+ AEDL+ R+ E C ++EDI LSICRGYGRVHRP D++RVF KMK+F C+P+
Sbjct: 61 LVSANKFKAAEDLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPS 120
Query: 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179
K+Y+TVLAILVEENQL LAF+FY++MREIG+ P VASLNVLIKALC+N GT+DA KIF
Sbjct: 121 QKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIF 180
Query: 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239
EMP RGC PDSYTYGTLI+GLCR G+I EAK+LF EM K C+PTVVTYTSLINGLC S
Sbjct: 181 LEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGS 240
Query: 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTY 299
K+V+EAMR EEM+SKG+EPNVFTYSSLMDGLCK G S QAMEL +MM+++ RPN+VTY
Sbjct: 241 KNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300
Query: 300 STLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359
+TL+ GLCKE K+QEAVE+LDRM LQGLKPDAGLYGK+IS FC I K++EAANFLDEM+L
Sbjct: 301 TTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMIL 360
Query: 360 GGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
GGITPNRLTW++H++ N VV+GLC P+RAF +YLSMR+R ISV+ T SL+ C CK
Sbjct: 361 GGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCK 420
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469
KG+ K+ ++VDE+V DGC+P +GTW ++ D+ + +A++ LL +L
Sbjct: 421 KGEFQKAVQLVDEIVTDGCIPSKGTWKLLIGHTLDKTIVGEASDTLLRDL 470
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 153/424 (36%), Positives = 235/424 (55%)
Query: 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD- 103
G + D STF+++I L A+Q RPA +L+ + E F ++ +GY LD
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE-EGDLDG 242
Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM-REIGIQPCVASLNVLI 162
A+R+ ++M EFGC + S ++ +E +++ A F + M + G P + N L+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLV 302
Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
LCK +G + A +I M G PD YTY ++I+GLC+LG++ EA E+ +M T+ C
Sbjct: 303 NGLCK-AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDC 361
Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
SP VTY +LI+ LC+ VEEA L + SKG+ P+V T++SL+ GLC AME
Sbjct: 362 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAME 421
Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
L + M SK P+ TY+ L++ LC +GKL EA+ +L +M+L G Y +I FC
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481
Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNR 401
K +EA DEM + G++ N +T+ NT++ GLCK+ A Q+ M
Sbjct: 482 KANKTREAEEIFDEMEVHGVSRNSVTY-------NTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
D TY+SL+T FC+ GDI K+A IV + +GC PD T+ +++ L ++ A
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594
Query: 462 AELL 465
++LL
Sbjct: 595 SKLL 598
|
|
| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 142/465 (30%), Positives = 244/465 (52%)
Query: 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
+I V++ +R E V AL F S +N F+H TF +MI KL Q +
Sbjct: 40 EIKELDVVKRLRQESCVPLALHFFKSIAN--SNLFKHTPLTFEVMIRKLAMDGQVDSVQY 97
Query: 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131
LL ++ + +ED+F+S+ Y +V A+ +F ++KEFGC+P+ K Y VL L+
Sbjct: 98 LLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLL 157
Query: 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
EN++++ + YR M+ G +P V + NVL+KALCKN+ +D A K+ EM N+GC PD+
Sbjct: 158 GENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNN-KVDGAKKLLVEMSNKGCCPDA 216
Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251
+Y T+I+ +C +G + E +EL + E P V Y +LINGLC+ + A L E
Sbjct: 217 VSYTTVISSMCEVGLVKEGRELAERFE-----PVVSVYNALINGLCKEHDYKGAFELMRE 271
Query: 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
M KG+ PNV +YS+L++ LC G A L M+ + PNI T S+L+ G G
Sbjct: 272 MVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGT 331
Query: 312 LQEAVEILDRM-KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
+A+++ ++M + GL+P+ Y ++ FC G +A + M G +PN
Sbjct: 332 TFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPN----- 386
Query: 371 LHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARI 429
IR + +++ G K + A ++ M + + Y++++ C+ ++ +
Sbjct: 387 --IRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESL 444
Query: 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL-LELMNKC 473
++ + + C P T++A + L D ++ A ++ +E ++C
Sbjct: 445 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC 489
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| TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 146/429 (34%), Positives = 231/429 (53%)
Query: 39 TAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98
+A F+ +ST S MI ++ F E LL R+ E I E F+ + R YG+
Sbjct: 66 SAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAYGKA 125
Query: 99 HRPLDAMRVFDKM-KEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM----REIGIQP 153
H P A+ +F +M EF C+ + KS+ +VL +++ E FY ++ + I P
Sbjct: 126 HLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISP 185
Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
S N++IKALCK +D A ++FR MP R C PD YTY TL++GLC+ +I EA L
Sbjct: 186 NGLSFNLVIKALCKLR-FVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 214 FKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
EM+++ CSP+ V Y LI+GLC+ + +L + M KG PN TY++L+ GLC
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCL 304
Query: 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333
G +A+ LL+ M+S + PN VTY TL+NGL K+ + +AV +L M+ +G + +
Sbjct: 305 KGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHI 364
Query: 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAF 392
Y +IS GK +EA + +M G PN I +++ +V GLC+ PN A
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN-------IVVYSVLVDGLCREGKPNEAK 417
Query: 393 QVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
++ M ++ TYSSL+ F K G ++ ++ E+ GC ++ +S ++ L
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 453 WDRRKMRQA 461
++++A
Sbjct: 478 CGVGRVKEA 486
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| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 139/453 (30%), Positives = 242/453 (53%)
Query: 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLV-SANQFRPAEDLLDRVNKEKCDITED 86
++KAL I A A +GF +++ ++ + S AE++ + + +
Sbjct: 150 IDKALSIVHLAQA---HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206
Query: 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHM 146
+ + RG+ A+ +FDKM+ GC P +Y T++ + ++ F+ R M
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 147 REIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206
G++P + S NV+I LC+ + +F + EM RG + D TY TLI G C+ G
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIKGYCKEGN 325
Query: 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266
++A + EM +P+V+TYTSLI+ +C++ ++ AM ++MR +G+ PN TY++
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385
Query: 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326
L+DG + G ++A +L+ M P++VTY+ L+NG C GK+++A+ +L+ MK +G
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386
L PD Y ++S FC EA EMV GI P+ +T+S +++QG C+
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYS-------SLIQGFCEQ 498
Query: 387 DPNR-AFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW 445
+ A +Y M + D TY++LI +C +GD+ K+ ++ +E+V G LPD T+
Sbjct: 499 RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
Query: 446 SAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478
S ++ L + + R+A LLL + V ++V
Sbjct: 559 SVLINGLNKQSRTREAKRLLLKLFYEESVPSDV 591
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| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 131/437 (29%), Positives = 233/437 (53%)
Query: 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLL-DRV 76
V +I+ +KD KAL +F+S E GF+H ST+ +I KL +F E++L D
Sbjct: 10 VTAVIKCQKDPMKALEMFNSMRKEV--GFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMR 67
Query: 77 NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136
+ E +++ + YGR + +A+ VF++M + CEPT SY ++++LV+
Sbjct: 68 ENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYF 127
Query: 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGT 196
A + Y MR+ GI P V S + +K+ CK S AA ++ M ++GC + Y T
Sbjct: 128 DQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRP-HAALRLLNNMSSQGCEMNVVAYCT 186
Query: 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256
++ G E ELF +M S + T+ L+ LC+ V+E +L +++ +G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAV 316
V PN+FTY+ + GLC+ G A+ ++ +I + +P+++TY+ L+ GLCK K QEA
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAE 306
Query: 317 EILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376
L +M +GL+PD+ Y +I+ +C G Q A + + V G P++ T+
Sbjct: 307 VYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTY------- 359
Query: 377 NTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435
+++ GLC + + NRA ++ + I + + Y++LI +G I ++A++ +E+
Sbjct: 360 RSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSE 419
Query: 436 DGCLPDEGTWSAVMTAL 452
G +P+ T++ ++ L
Sbjct: 420 KGLIPEVQTFNILVNGL 436
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| TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 134/475 (28%), Positives = 245/475 (51%)
Query: 9 WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP 68
W ++ +++ +I +++++ AL IF A + GF H+ T+ ++ KL A F P
Sbjct: 43 WPQRLFPKRLVSMITQQQNIDLALQIFLYAGKSHP-GFTHNYDTYHSILFKLSRARAFDP 101
Query: 69 AEDLL-DRVNKE---KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
E L+ D N KC E++F+ + R YG R +MR+F ++ +FG + + +S
Sbjct: 102 VESLMADLRNSYPPIKCG--ENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLN 159
Query: 125 TVLAILVEENQLKLAFRFYRHMRE-IGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
T+L +L++ + L +++ +E GI P + + N+L+KALCK + +++A+K+ E+P
Sbjct: 160 TLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKND-IESAYKVLDEIP 218
Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
+ G P+ TY T++ G G + AK + +EM + P TYT L++G C+
Sbjct: 219 SMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFS 278
Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
EA + ++M +EPN TY ++ LCK S +A + M+ + P+ ++
Sbjct: 279 EAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVI 338
Query: 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363
+ LC++ K+ EA + +M PD L +I C G+ EA DE G I
Sbjct: 339 DALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEFEKGSI- 397
Query: 364 PNRLTWSLHIRIHNTVVQGLC-KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422
P+ LT+ NT++ G+C K + A +++ M R ++ TY+ LI K G+
Sbjct: 398 PSLLTY-------NTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGN 450
Query: 423 IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477
+ + R+++E++ GC P++ T+ + L K A +++ + +MN V+ E
Sbjct: 451 VKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKVDKE 505
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| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 140/474 (29%), Positives = 242/474 (51%)
Query: 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAED 71
KIT Q+ +L+ +V+ ++ +F ++ NG+RH + ++I KL + +F+ +
Sbjct: 75 KITPFQLYKLLELPLNVSTSMELFSWTGSQ--NGYRHSFDVYQVLIGKLGANGEFKTIDR 132
Query: 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-FGCEPTPKSYITVLAIL 130
LL ++ E E +F+SI R Y + P R+ +M+ + CEPT KSY VL IL
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192
Query: 131 VEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD 190
V N K+A + M I P + + V++KA C + +D+A + R+M GC P+
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN-EIDSALSLLRDMTKHGCVPN 251
Query: 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250
S Y TLI+ L + ++ EA +L +EM C P T+ +I GLC+ + EA ++
Sbjct: 252 SVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVN 311
Query: 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310
M +G P+ TY LM+GLCK G A +L + +P IV ++TL++G G
Sbjct: 312 RMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI----PKPEIVIFNTLIHGFVTHG 367
Query: 311 KLQEAVEIL-DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369
+L +A +L D + G+ PD Y +I + G A L +M G PN ++
Sbjct: 368 RLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSY 427
Query: 370 SLHIRIHNTVVQGLCKTDP-NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR 428
++ +V G CK + A+ V M + +++ ++ LI+ FCK+ I ++
Sbjct: 428 TI-------LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480
Query: 429 IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482
I E+ GC PD T++++++ L + +++ A LL +++++ V A N
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL-WLLRDMISEGVVANTVTYN 533
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| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 134/424 (31%), Positives = 214/424 (50%)
Query: 43 ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102
A G + D T+ +++ L A LL ++ K K + I+ +I
Sbjct: 213 ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVN 272
Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
DA+ +F +M G P +Y +++ L + A R M E I P V + + LI
Sbjct: 273 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALI 332
Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
A K G + A K++ EM R PD +TY +LING C ++ EAK +F+ M +K C
Sbjct: 333 DAFVKE-GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 223 SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME 282
P VVTY +LI G C++K VEE M LF EM +G+ N TY++L+ GL + G A +
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451
Query: 283 LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342
+ + M+S P+I+TYS LL+GLCK GKL++A+ + + ++ ++PD Y +I C
Sbjct: 452 IFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMC 511
Query: 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNR 401
GK ++ + + L G+ PN + I+ T++ G C+ A ++ M+
Sbjct: 512 KAGKVEDGWDLFCSLSLKGVKPN-------VIIYTTMISGFCRKGLKEEADALFREMKED 564
Query: 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQA 461
+S TY++LI + GD SA ++ E+ G + D T S V+ L D R +
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 624
Query: 462 AELL 465
E+L
Sbjct: 625 LEML 628
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 126/418 (30%), Positives = 222/418 (53%)
Query: 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--D-I 83
++N AL + D + D T++ ++ L + + + A ++LDR+ + C D I
Sbjct: 187 EINNALSVLDRMSVS------PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 84 TEDIFL-SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142
T I + + CR G H AM++ D+M++ GC P +Y ++ + +E +L A +F
Sbjct: 241 TYTILIEATCRDSGVGH----AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296
Query: 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202
M G QP V + N++++++C MDA K+ +M +G +P T+ LIN LC
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAE-KLLADMLRKGFSPSVVTFNILINFLC 355
Query: 203 RLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262
R G + A ++ ++M C P ++Y L++G C+ K ++ A+ E M S+G P++
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRM 322
TY++++ LCK G A+E+L + SK P ++TY+T+++GL K GK +A+++LD M
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG 382
+ + LKPD Y ++ GK EA F E GI PN +T+ N+++ G
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTF-------NSIMLG 528
Query: 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
LCK+ +RA + M NR + +Y+ LI +G ++ +++EL G +
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNL2 | PP418_ARATH | No assigned EC number | 0.6595 | 0.9670 | 0.9936 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00001644001 | SubName- Full=Chromosome undetermined scaffold_119, whole genome shotgun sequence; (503 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 485 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-31 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-09 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 1e-32
Identities = 95/377 (25%), Positives = 165/377 (43%), Gaps = 20/377 (5%)
Query: 51 STFSLMISKLVSANQFRPAEDLLDRVN----KEKCDITEDIFLSICRGYGRVHRPLDAM- 105
STF++++S S+ A +L V K C + + +S C G+V DAM
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL-ISTCAKSGKV----DAMF 492
Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
VF +M G E ++ ++ Q+ AF Y MR ++P N LI A
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA- 551
Query: 166 CKNSGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
C SG +D AF + EM PD T G L+ G++ AKE+++ +
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
T YT +N Q + A+ ++++M+ KGV+P+ +S+L+D G +A E+
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
LQ + + V+YS+L+ ++A+E+ + +K L+P +I+ C+
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSI 403
+ +A L EM G+ PN +T+S+ + K D + + + I
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASER------KDDADVGLDLLSQAKEDGI 785
Query: 404 SVDSLTYSSLITCFCKK 420
+ + IT C +
Sbjct: 786 KPNLVMCRC-ITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-31
Identities = 101/414 (24%), Positives = 182/414 (43%), Gaps = 38/414 (9%)
Query: 71 DLLDR--VNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128
LLD + K F C+ V +A R F K+ PT ++ +++
Sbjct: 400 GLLDMDKIYHAK-------FFKACKKQRAVK---EAFR-FAKLIR---NPTLSTFNMLMS 445
Query: 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188
+ + A R R ++E G++ LI C SG +DA F++F EM N G
Sbjct: 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFEVFHEMVNAGVE 504
Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248
+ +T+G LI+G R G++ +A + M +K P V + +LI+ QS +V+ A +
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564
Query: 249 FEEMR--SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI----VTYSTL 302
EM+ + ++P+ T +LM G +A E+ QM+ H NI Y+
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI----HEYNIKGTPEVYTIA 620
Query: 303 LNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362
+N ++G A+ I D MK +G+KPD + ++ G +A L + GI
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680
Query: 363 TPNRLTWSLHIRIHNTVVQGLCKTDPN--RAFQVYLSMRNRSISVDSLTYSSLITCFCKK 420
+++S + G C N +A ++Y +++ + T ++LIT C+
Sbjct: 681 KLGTVSYS--------SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474
+ K+ ++ E+ G P+ T+S ++ A +R+ LL + +
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVAS-ERKDDADVGLDLLSQAKEDGI 785
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 1e-21
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273
P VVTY +LI+G C+ VEEA++LF EM+ +G++PNV+TYS L+DGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 2e-17
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238
PD TY TLI+G C+ GK+ EA +LF EM+ + P V TY+ LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 3e-16
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308
P+V TY++L+DG CK G +A++L M + +PN+ TYS L++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 4e-16
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203
P V + N LI CK G ++ A K+F EM RG P+ YTY LI+GLC+
Sbjct: 1 PDVVTYNTLIDGYCKK-GKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 7e-15
Identities = 84/375 (22%), Positives = 147/375 (39%), Gaps = 53/375 (14%)
Query: 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRVHRPL 102
GF D S + +I +S + AE + R+ T+D + ++ GY + P
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME------TKDAVSWTAMISGYEKNGLPD 371
Query: 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162
A+ + M++ P + +VL+ L + + + G+ V N LI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431
Query: 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC 222
+ K +D A ++F +P + D ++ ++I GL + +EA F++M
Sbjct: 432 EMYSK-CKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTL- 485
Query: 223 SPTVVTYTSL------INGLCQSKSVEEAMRLFEEMRSKGVEPN---------------- 260
P VT + I L K + A L + G PN
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIH-AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544
Query: 261 ---------VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311
V +++ L+ G G S A+EL M+ P+ VT+ +LL + G
Sbjct: 545 NQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 312 LQEAVEILDRMKLQ-GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370
+ + +E M+ + + P+ Y ++ GK EA NF+++M ITP+ W
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661
Query: 371 LHI---RIHNTVVQG 382
+ RIH V G
Sbjct: 662 ALLNACRIHRHVELG 676
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 9e-14
Identities = 21/50 (42%), Positives = 37/50 (74%)
Query: 294 PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
P++VTY+TL++G CK+GK++EA+++ + MK +G+KP+ Y +I C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 87/449 (19%), Positives = 166/449 (36%), Gaps = 106/449 (23%)
Query: 96 GRVHRPLDAMRVFDKMKEFGCEPT--PKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153
GR L+ + E GC T +Y ++ + ++ Y H+ G +P
Sbjct: 101 GRHREALELFEIL----EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156
Query: 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213
+N ++ K G + A ++F EMP R + ++GT+I GL G EA L
Sbjct: 157 DQYMMNRVLLMHVK-CGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFAL 211
Query: 214 FKEM--ETKACSPTVV-------------------------------TYTS--LINGLCQ 238
F+EM + P T+ S LI+ +
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT 298
+E+A +F+ M K ++S++ G G S +A+ L M + T
Sbjct: 272 CGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 299 YSTLL---------------------NGL--------------CKEGKLQEAVEILDRMK 323
+S ++ G K G++++A + DRM
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 324 LQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGL 383
+ L + +I+ + + G+ +A + M+ G+ PN +T+ V
Sbjct: 388 RKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF--------LAVLSA 435
Query: 384 CKTD--PNRAFQVYLSM-RNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440
C+ + ++++ SM N I ++ Y+ +I ++G + ++ ++ P
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF---KP 492
Query: 441 DEGTWSAVMTALWDRRKM---RQAAELLL 466
W+A++TA + + R AAE L
Sbjct: 493 TVNMWAALLTACRIHKNLELGRLAAEKLY 521
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 18/285 (6%)
Query: 80 KCDITEDIFLS--ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137
K + D F+S + Y + DA VFD M E T ++ ++LA +
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307
Query: 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197
A Y MR+ G+ + +++I+ + ++ A + + G D L
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIR-IFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
++ + G++ +A+ +F M K ++++ +LI G +A+ +FE M ++GV
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR--PNIVTYSTLLNGLCKEGKLQEA 315
PN T+ +++ G S Q E+ Q M S+ HR P + Y+ ++ L +EG L EA
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSM-SENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360
++ R KP ++ +++ C I K E E + G
Sbjct: 482 YAMIRRAP---FKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYG 522
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-11
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
P VVTY +LI+GLC++ V+EA+ L +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 1e-10
Identities = 18/34 (52%), Positives = 29/34 (85%)
Query: 290 KRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
K +P++VTY+TL++GLC+ G++ EAVE+LD M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 78/385 (20%), Positives = 155/385 (40%), Gaps = 38/385 (9%)
Query: 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163
A VFD+M C S+ +++ E + + MRE+ + P + ++ +I
Sbjct: 241 ARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223
A C+ G ++ + G D +LI LG EA+++F METK
Sbjct: 297 A-CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--- 352
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
V++T++I+G ++ ++A+ + M V P+ T +S++ G ++L
Sbjct: 353 -DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343
++ K +V + L+ K + +A+E+ + + D + II+
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRL 467
Query: 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHI-------------RIHNTVVQ---GLCKTD 387
+ EA F +M L + PN +T + IH V++ G
Sbjct: 468 NNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526
Query: 388 PNRAFQVYLSMRNRSISV--------DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL 439
PN +Y+ + + D ++++ L+T + G + + + +V G
Sbjct: 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
Query: 440 PDEGTWSAVMTALWDRRKMRQAAEL 464
PDE T+ +++ A + Q E
Sbjct: 587 PDEVTFISLLCACSRSGMVTQGLEY 611
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 2e-10
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 185 RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218
+G PD TY TLI+GLCR G++ EA EL EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 65/320 (20%), Positives = 130/320 (40%), Gaps = 51/320 (15%)
Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225
+ +G D A + + M +PD T ++++ LG + +L + E K
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285
VV +LI + K +++A+ +F + K +V +++S++ GL +A+ +
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFR 479
Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-----MKLQGLKPDA--GLYGK-- 336
M+ +PN VT L+ + G L EI + G P+A LY +
Sbjct: 480 QMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 337 ---------------------IISCFCDIGKYQEAANFLDEMVLGGITPNRLTW-SLHIR 374
+++ + GK A + MV G+ P+ +T+ SL
Sbjct: 539 RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 375 IHNT--VVQGLCKTDPNRAFQVYLSMRNR-SISVDSLTYSSLITCFCKKGDIHKSARIVD 431
+ V QGL + + SM + SI+ + Y+ ++ + G + ++ ++
Sbjct: 599 CSRSGMVTQGL---------EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649
Query: 432 ELVLDGCLPDEGTWSAVMTA 451
++ + PD W A++ A
Sbjct: 650 KMPIT---PDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 5e-09
Identities = 20/35 (57%), Positives = 30/35 (85%)
Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNV 261
VTY +LI+GLC++ VEEA+ LF+EM+ +G+EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 71/308 (23%), Positives = 113/308 (36%), Gaps = 51/308 (16%)
Query: 69 AEDLLDRVNKEKC-DITEDIF-----------LSICRGYGRVHRPLDAMRVFDKMKEFGC 116
A L++ +K KC D ++F SI G +R +A+ F +M
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTL 485
Query: 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176
+P + I L+ L + H+ GI N L+ + G M+ A+
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR-CGRMNYAW 544
Query: 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236
F D ++ L+ G GK A ELF M +P VT+ SL+
Sbjct: 545 NQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 237 CQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM-------- 287
+S V + + F M K + PN+ Y+ ++D L + G ++A + M
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 288 ------------------ISKRH----RPNIVTYSTLLNGLCKE-GKLQEAVEILDRMKL 324
++ +H PN V Y LL L + GK E + M+
Sbjct: 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
Query: 325 QGLKPDAG 332
GL D G
Sbjct: 720 NGLTVDPG 727
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-08
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257
VTY SLI+G C++ +EEA+ LF+EM+ KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-08
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 364 PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK 419
P+ +T+ NT++ G CK A +++ M+ R I + TYS LI CK
Sbjct: 1 PDVVTY-------NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-08
Identities = 18/35 (51%), Positives = 29/35 (82%)
Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331
VTY+TL++GLCK G+++EA+E+ MK +G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.7 bits (115), Expect = 1e-07
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287
KG++P+V TY++L+DGLC+ G +A+ELL M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167
+Y T++ ++ +++ A + + M++ GI+P V + ++LI LCK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-06
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
VTY++L++G CK GKL+EA+E+ MK +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (115), Expect = 2e-06
Identities = 43/235 (18%), Positives = 84/235 (35%), Gaps = 5/235 (2%)
Query: 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165
+ + ++ + + L++ +L+ A E+ + P +A + + L
Sbjct: 45 LLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLL 104
Query: 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--KACS 223
+ G + A ++ + PD + L LG EA EL+++ +
Sbjct: 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN 164
Query: 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283
+L L EEA+ L E+ + + +L K G +A+E
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224
Query: 284 LQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338
+ + N L L + G+ +EA+E L+ K L PD G +
Sbjct: 225 YEKALELDP-DNAEALYNLALLLLELGRYEEALEALE--KALELDPDLYNLGLAL 276
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-06
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259
+ TY +L+ L ++ + A+ + EEM++ G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452
D +TY++LI +CKKG + ++ ++ +E+ G P+ T+S ++ L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 49/270 (18%), Positives = 111/270 (41%), Gaps = 37/270 (13%)
Query: 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149
S+ GY +A+ ++ +M++ G ++ ++ I L+ A + + +
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209
G + + L+ K G M+ A +F MP + + ++ LI G G+ +
Sbjct: 355 GFPLDIVANTALVDLYSK-WGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTK 409
Query: 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM-RSKGVEPNVFTYSSLM 268
A E+F+ M + +P VT+ ++++ S E+ +F+ M + ++P Y+ ++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 269 DGLCKGGCSSQAMELLQ--------------MMISKRHR-----------------PNIV 297
+ L + G +A +++ + + H+ +
Sbjct: 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327
Y LLN G+ EA ++++ +K +GL
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETK 220
TY +LI+G C+ GK+ EA ELFKEM+ K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226
TY TLI+GLC+ G++ EA ELFKEM+ + P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296
TY++L+DGLCK G +A+EL + M + P++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 35/288 (12%)
Query: 140 FRFYRHMREIGIQPCVASL----NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG 195
F + R + + +S N ++ALC + G ++ A K+ M D Y
Sbjct: 32 FHGRKRSRGLSVAASSSSSTHDSNSQLRALCSH-GQLEQALKLLESMQELRVPVDEDAYV 90
Query: 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL--------INGLCQSKSVEEAMR 247
L LC + E + CS + ++ SL ++ + + A
Sbjct: 91 ALFR-LCEWKRAVEEGS-------RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWY 142
Query: 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307
+F +M E ++F+++ L+ G K G +A+ L M+ RP++ T+ +L
Sbjct: 143 VFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367
L E+ + G + D + +I+ + G A D M + +
Sbjct: 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCI 254
Query: 368 TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLIT 415
+W+ I + G C +++ +MR S+ D +T +S+I+
Sbjct: 255 SWNAMISGY--FENGEC----LEGLELFFTMRELSVDPDLMTITSVIS 296
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (95), Expect = 5e-05
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 150 GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
G++P V + N LI LC+ G +D A ++ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRA-GRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 80/403 (19%), Positives = 144/403 (35%), Gaps = 106/403 (26%)
Query: 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR--GYGRVHRPLDAMRVF----DKMKE 113
L S Q A LL+ + + + + ED ++++ R + R RV
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEE--GSRVCSRALSSHPS 118
Query: 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173
G +L++ V +L A+ + M E + S NVL+ K +G D
Sbjct: 119 LGVRLGN----AMLSMFVRFGELVHAWYVFGKMPERD----LFSWNVLVGGYAK-AGYFD 169
Query: 174 AAFKIFREMPNRGCTPDSYTY-----------------------------------GTLI 198
A ++ M G PD YT+ LI
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229
Query: 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258
+ G + A+ +F M + C +++ ++I+G ++ E + LF MR V+
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEI 318
P++ T +S++ A ELL G + E+
Sbjct: 286 PDLMTITSVI----------SACELL-------------------------GDERLGREM 310
Query: 319 LDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI-TPNRLTWSLHIRIHN 377
+ G D + +I + +G + EA E V + T + ++W+
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA-----EKVFSRMETKDAVSWT------- 358
Query: 378 TVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSS-LITCFC 418
++ G K P++A + Y M ++S D +T +S L C C
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442
TY++LI CK G + ++ + E+ G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329
+ TY+ LL L K G A+ +L+ MK GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 9e-04
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189
+ + N L+ AL K +G D A + EM G P
Sbjct: 1 LETYNALLLALAK-AGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 262 FTYSSLMDGLCKGGCSSQAMELLQMMISK 290
TY+SL+ G CK G +A+EL + M K
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191
+ N LI LCK G ++ A ++F+EM RG PD
Sbjct: 2 TYNTLIDGLCKA-GRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGC 187
+ N LI CK G ++ A ++F+EM +G
Sbjct: 2 TYNSLISGYCKA-GKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.58 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.45 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.34 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.14 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.09 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.01 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.9 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.83 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.79 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.79 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.63 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.17 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.15 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.13 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.09 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.09 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.05 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.92 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.8 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.77 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.76 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.7 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.57 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.57 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.3 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.17 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.08 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.04 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.83 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.78 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.67 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.67 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.44 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.44 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.41 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.36 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.35 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.22 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.19 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.03 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.96 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.89 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.82 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.81 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.69 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.6 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.55 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.32 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.16 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.12 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.1 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.93 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.92 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.78 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.77 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.75 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.41 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.25 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.23 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.14 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.05 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.05 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.97 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.63 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.55 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.5 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.44 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.11 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.71 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.4 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.15 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.66 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.58 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.56 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.46 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.3 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.81 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.68 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.51 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.29 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.28 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.12 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.03 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.76 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.18 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.12 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.04 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.97 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.73 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.61 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.47 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.39 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.2 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.5 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.48 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.3 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.2 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.87 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.5 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.5 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.05 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.05 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 84.97 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.93 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.86 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.57 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.47 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 83.27 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.71 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.06 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 81.64 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 81.63 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.91 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 80.88 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.79 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.64 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=501.12 Aligned_cols=399 Identities=21% Similarity=0.341 Sum_probs=208.5
Q ss_pred cccccccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 2 GVKTMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
+.++++.|+. ..+..++..+.+.|.+++|+.+|+.+. .||..+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 397 ~~~gvv~~~~-v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 397 EKRGLLDMDK-IYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HhCCCCCchH-HHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 3444444432 223334444444555555555544444 14555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL 161 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (485)
.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCCChHHHHHHHHhhhh--CCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 011463 162 IKALCKNSGTMDAAFKIFREMPN--RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 239 (485)
+..|++. |++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.
T Consensus 549 I~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 549 ISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 5555554 555555555555543 3445555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+..+|+.++.+|++.|++++|..+|
T Consensus 628 G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf 707 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHH
Q 011463 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSM 398 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~ 398 (485)
++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|. .++.+|++. +.+.|.++++.|
T Consensus 708 ~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~-------sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS-------ILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555554 455555544 555555555555
Q ss_pred HhCCCccchhhHHHHHHH
Q 011463 399 RNRSISVDSLTYSSLITC 416 (485)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~ 416 (485)
.+.|+.||..+|+.++..
T Consensus 781 ~k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HHcCCCCCHHHHHHHHHH
Confidence 555555555555555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=493.51 Aligned_cols=453 Identities=16% Similarity=0.265 Sum_probs=429.9
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCC-CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
-.+..+...+.+.|++++|+++|+.|. ..+ .+++...+..++..|.+.|.+++|..+++.|.. |+..+|+.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~---~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDME---KRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 345667788889999999999999999 555 456788888999999999999999999999875 799999999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|++. |+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~-G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA-GQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH--CCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET--KACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
+++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchh
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSL 408 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~ 408 (485)
+..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+ .++.+|++. ++++|.++|++|...|+.||..
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN-------~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN-------ALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999888 999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-----------------------cCcHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD-----------------------RRKMRQAAELL 465 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~ 465 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+ .+..++|..+|
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999998865442 12357899999
Q ss_pred HHHHHcCCCccchhc
Q 011463 466 LLELMNKCVEAEVDI 480 (485)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (485)
++|++.|..|+.+++
T Consensus 836 ~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 836 RETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHCCCCCCHHHH
Confidence 999999998887643
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=482.71 Aligned_cols=437 Identities=19% Similarity=0.245 Sum_probs=358.7
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
.+++..++..+.+.|++++|+++|+.|. ..+..||..+|+.++.+|...+++..+.+++..+.+.|..|+..+++.+
T Consensus 152 ~~~~n~li~~~~~~g~~~~A~~~f~~M~---~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 152 LFSWNVLVGGYAKAGYFDEALCLYHRML---WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred eeEHHHHHHHHHhCCCHHHHHHHHHHHH---HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 3456678888999999999999999998 6799999999999999998888999999999999888888889999999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
+.+|++.|+++.|..+|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++. |+
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~-g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL-GD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-CC
Confidence 9999999999999999999864 688899999999999999999999999999999999999999999999888 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 251 (485)
.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999863 6888999999999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH
Q 011463 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (485)
|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|.+.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 9988999999999999999999999999999999999999888999999999999999999999999888863 567
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh----------------------------hHHHHHHHH
Q 011463 332 GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR----------------------------IHNTVVQGL 383 (485)
Q Consensus 332 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~l~~~~ 383 (485)
.+|+.++.+|++.|+.++|..+|++|.. ++.||..+|...+. +++.++..|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 7888888888888888888888888875 47787777663222 233555555
Q ss_pred hcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHH
Q 011463 384 CKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 384 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
++. +.++|.++|+.+ .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 555 555555555554 23556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 011463 463 ELLLLELM 470 (485)
Q Consensus 463 ~~~~~~~~ 470 (485)
++|+.|.+
T Consensus 610 ~~f~~M~~ 617 (857)
T PLN03077 610 EYFHSMEE 617 (857)
T ss_pred HHHHHHHH
Confidence 66666663
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=458.00 Aligned_cols=433 Identities=20% Similarity=0.311 Sum_probs=363.4
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
+...++..+.+.|++++|+++|+.+.. ..+..||..+|+.++.+|.+.++++.|.+++..|.+.|..|+..+++.++.
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~--~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEA--GCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 667888999999999999999999983 234679999999999999999999999999999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++..++.. |..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-GSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-CcHH
Confidence 99999999999999999974 799999999999999999999999999999999999999988888888877 8888
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888753 477788888888888888888888888888
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..||..+++.++.+|++.|++++|.++|++|. .||..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 8888888888888888888888888888888888888888888888888888888888888888888775 357778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHh-CCCccchhhHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN-RSISVDSLTYS 411 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~~~~ 411 (485)
|+.++.+|++.|+.++|.++|++|.+.|+.||..||. .++.+|... ..++|.++|+.|.+ .++.|+..+|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-------AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-------HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 8888888888888888888888888888888888877 788888777 78888888888864 57777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.++++|++.|++++|.+++++| ++.|+..+|++++.+|...|+.+.|..+++++++.
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 8888888888888888777665 35677777777777766666666666666666543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-59 Score=462.68 Aligned_cols=432 Identities=17% Similarity=0.227 Sum_probs=395.8
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
++++.++..|.+.|++++|+++|+.|. ..++.||..+|+.++.+|.+.|+.+.|.+++..+.+.|..|+..+|+.++
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~---~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMR---ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHH---HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 455678888999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.++++. |++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~ 405 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDL 405 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chH
Confidence 999999999999999999863 788899999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 58889999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG 332 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (485)
.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|..++..+++.++.+|.+.|++++|..+|+.+ .+|..
T Consensus 482 ~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~ 555 (857)
T PLN03077 482 LL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVV 555 (857)
T ss_pred Hh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChh
Confidence 86 4899999999999999999999999999999999999999999999999999999999999999886 57999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHH-hCCCccchhhH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR-NRSISVDSLTY 410 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~-~~~~~~~~~~~ 410 (485)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||. .++.+|.+. ..++|.++|+.|. +.++.|+..+|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-------~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI-------SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH-------HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 99999999999999999999999999999999999998 899999988 9999999999998 67899999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 411 SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 411 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+.++++|++.|++++|.+++++|. +.||..+|.+++.+|...|+.+.+....+++++..
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 999999999999999999999984 67898899888888877777777777777776643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-59 Score=452.26 Aligned_cols=438 Identities=16% Similarity=0.221 Sum_probs=417.3
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
+...++..++.++.+.++++.|.+++..+. ..|..||+.+|+.++..|.+.|+++.|.++|++|.+ |+..+|+
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVE---SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 455778899999999999999999999999 789999999999999999999999999999999964 6899999
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 169 (485)
.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|..+.+.+++..+.+.|+.||..+++.++..|++.
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~- 272 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC- 272 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++++|.++|+.|.+ +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 999999999999975 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP 329 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (485)
..|.+.|+.||..+++.++.+|++.|++++|.++|+.|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999854 699999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVL-GGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS 407 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 407 (485)
|..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|. .++..+++. +.++|.++++++ +..|+.
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~-------~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA-------CMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH-------hHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 999999999999999999999999999986 59999999988 999999999 999999998865 567899
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
.+|+.++.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.++++.|.+.|...
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999765 45 46799999999999999999999999999999754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=262.37 Aligned_cols=435 Identities=11% Similarity=0.106 Sum_probs=258.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...++..+.+.|++++|+.+++.+. ...++++.++..++..+...|++++|.+.|+++.+..+. +...+..++..
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 508 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLE----KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARI 508 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHH
Confidence 3445666677777777777777776 234556666777777777777777777777777666543 45566666667
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...+... |++++
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~ 585 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK-GQLKK 585 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC-CCHHH
Confidence 777777777777777776653 3456666666666767777777777777666543 23344455555555555 67777
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
|..+++.+.+.. +.+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777766666543 2355666666666666677777776666665542 22445566666666666666666666666665
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (485)
.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 43 3345556666666666666666666666665553 2245555555666666666666666666665542 333455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
..++.++...|++++|.+.++++.+.. |+.. .++..+...+... +.++|...|+++.+..+. ++.+++.+
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 810 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH--PNDA------VLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNL 810 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH------HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 555566666666666666666655532 2211 1122444444444 566666666666555443 45555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+..+...|+ .+|+..++++.+.. +.+..++..+..++...|++++|.++++++++.+..
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555555 55555555555441 223334444555555556666666666666555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-29 Score=257.71 Aligned_cols=435 Identities=14% Similarity=0.081 Sum_probs=349.2
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+..++.++...|++++|++.|+++. ...+.+...+..++..+...|++++|.+.++.+....+. +..++..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKAL----SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHH----hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 34456677888888999999999999888 233556777888888888999999999999998887655 6778888
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
+...+.+.|++++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+... |
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAA-G 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc-C
Confidence 8888888999999999999887764 4567778888888889999999999999888754 45567777778787777 9
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
++++|...++.+.+... .+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988887643 366778888888889999999999999887753 3357788888888899999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC
Q 011463 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD 330 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (485)
.+.+.. +.+...+..+...+...|++++|...++.+...+. +..++..+..++...|++++|...++.+.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 888775 45677778888888889999999999998887643 44667778888888999999999998888764 567
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhh
Q 011463 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT 409 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~ 409 (485)
...+..+...|...|++++|...|+++.+.. |+.. .+++.+...+... + .+|+..++++....+. ++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~------~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~ 839 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNA------VVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAI 839 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCH------HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHH
Confidence 7888888888888999999999999988754 3321 1223666666666 6 7799999988877555 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+..+..++...|++++|.+.|+++++.+ +.+..++..++.++.+.|++++|.++++++++
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 7888888888999999999999998875 34777888888889999999999999988863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=190.16 Aligned_cols=438 Identities=13% Similarity=0.125 Sum_probs=357.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
-..++.-..+.||+.+|++.-...- ...+.+......+-..+....+++.....-...++..+. -.++|..+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~----~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~ 125 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVG----QEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANI 125 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhh----ccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHH
Confidence 4456777888999999999887766 222444555555556667777777666665556665443 56889999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+-..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|...++.+ |+.....+-+..+.+..|++++
T Consensus 126 ~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccch
Confidence 999999999999999999864 4468899999999999999999999999999854 8888887777777777799999
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-VVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
|...+.+..+.... -...|+.|...+...|+...|++.|++..+. .|+ ...|..|...|...+.+++|...+.+..
T Consensus 203 a~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 99999888876432 4568899999999999999999999999875 333 5678889999999999999999999888
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
... +.....+..+...|...|+.+.|++.+++.++..+. =+..|+.+..++-..|++.+|...+++..... +.-...
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 763 335677888888899999999999999999987432 46789999999999999999999999988864 345678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.+.|...|.+.|.+++|..+|....+ +.|.-. ..++.+...|-.+ +.++|+..|++.+...+. -...|+.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~--v~p~~a------aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~N 427 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALE--VFPEFA------AAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSN 427 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh--hChhhh------hhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHh
Confidence 88999999999999999999999887 344422 3445777777777 999999999999876443 4578899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDE-GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+...|...|+.+.|++.+.+++.- .|.. ..++.|...|...|+..+|+.-++.+++..+..++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 999999999999999999999975 5654 46788999999999999999999999997765554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-23 Score=210.48 Aligned_cols=429 Identities=13% Similarity=0.085 Sum_probs=330.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH-HHH--------
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIF-------- 88 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~-------- 88 (485)
....+...|++++|+..|++++ ...|.++.++..+..++.+.|++++|++.|+++.+..+.... ..|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL----~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAV----RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 3567788999999999999999 334668899999999999999999999999999987654321 112
Q ss_pred ----HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 011463 89 ----LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIK 163 (485)
Q Consensus 89 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~ 163 (485)
......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|+++.+.. |+ ...+..+..
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~ 427 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 223456778999999999999999874 4567788889999999999999999999999854 44 444444544
Q ss_pred HHHhcCCChHHHHHHHHhhhhCCCC--------CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 164 ALCKNSGTMDAAFKIFREMPNRGCT--------PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
.+ .. ++.++|..+++.+...... .....+..+...+...|++++|++.|++..+... .+...+..+...
T Consensus 428 l~-~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 428 LY-RQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HH-Hh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 44 44 6789999998876543110 0123455677888899999999999999988642 356677888999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChh---------hHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIV---------TYSTLLNGL 306 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~ 306 (485)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++.. .+......+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998763 3355555555666778999999999998865432222211 123456678
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+. .|+.. .+...+...+...
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~------~a~~~la~~~~~~ 650 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNA------DARLGLIEVDIAQ 650 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------HHHHHHHHHHHHC
Confidence 899999999999872 2556777888999999999999999999999985 35432 2233777777777
Q ss_pred -ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---ChhhHHHHHHHHHhcCcHHH
Q 011463 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC--LP---DEGTWSAVMTALWDRRKMRQ 460 (485)
Q Consensus 387 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~ 460 (485)
++++|.+.++.+.+..+. +...+..+..++...|++++|.++++++....- +| +...+..+...+...|++++
T Consensus 651 g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 651 GDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999998876544 566777888899999999999999999987521 12 12355566788889999999
Q ss_pred HHHHHHHHHHc
Q 011463 461 AAELLLLELMN 471 (485)
Q Consensus 461 A~~~~~~~~~~ 471 (485)
|++.|++++..
T Consensus 730 A~~~y~~Al~~ 740 (1157)
T PRK11447 730 ALETYKDAMVA 740 (1157)
T ss_pred HHHHHHHHHhh
Confidence 99999999863
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-22 Score=202.80 Aligned_cols=448 Identities=13% Similarity=0.046 Sum_probs=294.9
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhH----------------HHHHHHHHhcCCcchHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTF----------------SLMISKLVSANQFRPAEDLLD 74 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~ 74 (485)
.+-....++..+.+.|+.++|.+.++++.+ ..|.++... ..+++.+...|++++|.+.|+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~----~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQ----LAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 344455667777888888888888888872 223443332 233456778888888888888
Q ss_pred HHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 011463 75 RVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI--- 151 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 151 (485)
.+...+++................|+.++|++.++++.+.. |.+...+..+...+...|+.++|++.++++.....
T Consensus 137 ~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 137 KLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 88776543211111112222234578888888888887764 44666777888888888888888888887754210
Q ss_pred ---------------C--------------CCHHHHH---------------------HHHHHHHhcCCChHHHHHHHHh
Q 011463 152 ---------------Q--------------PCVASLN---------------------VLIKALCKNSGTMDAAFKIFRE 181 (485)
Q Consensus 152 ---------------~--------------~~~~~~~---------------------~ll~~~~~~~~~~~~a~~~~~~ 181 (485)
. |+..... .....+... |++++|+..|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~-g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS-GQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 0 1100000 011223344 888888888888
Q ss_pred hhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-ChhhH------------HHHHHHHHccCCHHHHHHH
Q 011463 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTY------------TSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~ll~~~~~~~~~~~a~~~ 248 (485)
..+.... +...+..+..++.+.|++++|+..|++..+..... ....+ ......+.+.|++++|...
T Consensus 295 aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8876432 67788888888888899999998888887653221 11111 1223456678888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH---------------------------
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST--------------------------- 301 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------------------- 301 (485)
|+++.+.. +.+...+..+..++...|++++|.+.|+++++.... +...+..
T Consensus 374 ~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 88888764 335666777788888888888888888888775332 2222222
Q ss_pred ---------------HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 302 ---------------LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 302 ---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
+...+...|++++|...+++..+.. +-+...+..+...|.+.|++++|...++++.+.. |+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC
Confidence 2233456788888888888888764 3456677788888888999999999888887632 322
Q ss_pred ccccc--------------------------------------------------------------------hhhhHHH
Q 011463 367 LTWSL--------------------------------------------------------------------HIRIHNT 378 (485)
Q Consensus 367 ~~~~~--------------------------------------------------------------------~~~~~~~ 378 (485)
..... ...++..
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~ 608 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHH
Confidence 11000 0011222
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 011463 379 VVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRR 456 (485)
Q Consensus 379 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 456 (485)
+...+... ++++|+..|+++....+. +...+..++..+...|++++|++.++.+.+. .| +...+..+..++...|
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCC
Confidence 33344444 778888888888777655 6777778888888888888888888877754 33 3445566777777888
Q ss_pred cHHHHHHHHHHHHHcCC
Q 011463 457 KMRQAAELLLLELMNKC 473 (485)
Q Consensus 457 ~~~~A~~~~~~~~~~~~ 473 (485)
++++|.++++++++...
T Consensus 686 ~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CHHHHHHHHHHHhhhCc
Confidence 88888888888887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-22 Score=192.91 Aligned_cols=407 Identities=13% Similarity=0.036 Sum_probs=269.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
......+.+.|++++|+..|++++ ...|++..|..+..+|.+.|++++|++.++.+++.++. +...+..+..+|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al-----~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAI-----ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 356778899999999999999999 34567888999999999999999999999999998765 778899999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE--------------------------- 148 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------- 148 (485)
...|++++|+..|..+...+ +.+......++..+........+...++.-..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999999887765542 11111111111111111111111111110000
Q ss_pred cCCCCCHH-HHHHHHH--HHHhcCCChHHHHHHHHhhhhCC-C-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 011463 149 IGIQPCVA-SLNVLIK--ALCKNSGTMDAAFKIFREMPNRG-C-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS 223 (485)
Q Consensus 149 ~~~~~~~~-~~~~ll~--~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 223 (485)
....+... .+..+.. .-.+..+++++|.+.|+...+.+ . +.....+..+..++...|++++|+..|++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 00000000 0000000 00012257788888888877654 1 2245567777777888888888888888877652 2
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011463 224 PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303 (485)
Q Consensus 224 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 303 (485)
.....|..+..++...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++.++..+. +...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHH
Confidence 235567777777888888888888888887764 345677777888888888888888888888776432 566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQG 382 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 382 (485)
.++.+.|++++|+..+++..... +.+...++.+..++...|++++|...|++..+.. |+. ..+......++.....
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHH
Confidence 78888888888888888877653 4456778888888888888888888888877643 321 1111111111122222
Q ss_pred HhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 383 LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 383 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+... ++++|.+++++.....+. +...+..+...+...|++++|++.|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223 777888888877766543 4456777788888888888888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-21 Score=185.40 Aligned_cols=332 Identities=12% Similarity=0.069 Sum_probs=275.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
-.++..+.++|++++|+.+++.++ ...+.++..+..++.++...|++++|.+.++++....|. +...+..+...+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l----~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l 120 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV----LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH----HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 345777889999999999999998 344666777888888889999999999999999998876 788899999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|++++|+..++++.+.. +.+...+..+..++...|++++|...++.+.... |+.......+..+... |++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~-g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNK-SRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHc-CCHHHH
Confidence 99999999999999998864 4567888999999999999999999999887754 3333222223346666 999999
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE----AMRLFEE 251 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 251 (485)
...++.+.+....++......+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876544445555666788999999999999999998764 3467778889999999999986 8999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH
Q 011463 252 MRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA 331 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (485)
..+.. +.+...+..+...+.+.|++++|...++++....+. +...+..+..++...|++++|...++++...+ |+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc
Confidence 98874 446778889999999999999999999999987543 56778888999999999999999999998763 443
Q ss_pred -HhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 332 -GLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 332 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..+..+..++...|+.++|...|++..+..
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344456778899999999999999998753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-22 Score=174.40 Aligned_cols=400 Identities=15% Similarity=0.081 Sum_probs=327.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
+-..+.+..+++.....-..++ +..+.-.++|+.+...+...|++++|+.+++.+++..++ ..+.|..+..++..
T Consensus 88 l~ai~~q~~r~d~s~a~~~~a~----r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~ 162 (966)
T KOG4626|consen 88 LSAIFFQGSRLDKSSAGSLLAI----RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVT 162 (966)
T ss_pred ehhhhhcccchhhhhhhhhhhh----hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHh
Confidence 4456777778887777666666 344566889999999999999999999999999999876 78999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhh-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCChHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKS-YITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a 175 (485)
.|+.+.|.+.|...++.+ |+... ...+...+-..|+.++|...|.+.++.. |... .|..+...+-.. |+...|
T Consensus 163 ~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~-Gei~~a 237 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQ-GEIWLA 237 (966)
T ss_pred cCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhc-chHHHH
Confidence 999999999999998854 55443 3445556667899999999999998843 5443 455555554444 999999
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+..|++.++.++. -...|-.|...|...+.++.|...|.+..... +.....+..+...|...|.++-|+..+++..+.
T Consensus 238 iq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 238 IQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 9999999987433 46788899999999999999999999987752 335677888888899999999999999999987
Q ss_pred CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHH
Q 011463 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335 (485)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (485)
. +-=+..|+.+..++...|+..+|.+.+.+.+..... .....+.|...+...|.+++|..+|....+.. +--...++
T Consensus 316 ~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~n 392 (966)
T KOG4626|consen 316 Q-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHN 392 (966)
T ss_pred C-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhh
Confidence 3 223678999999999999999999999999987433 57788899999999999999999999988753 22356789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
.|...|-+.|++++|+..+++.++ +.|+-. ..++.+...|... +...|.+.+.+.+..++. -....+.|.
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA------da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLa 463 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR--IKPTFA------DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLA 463 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh--cCchHH------HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHH
Confidence 999999999999999999999987 556532 3344666777776 999999999999987655 467788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPDEG 443 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 443 (485)
..|...|++.+|+.-+++..+. +||..
T Consensus 464 si~kDsGni~~AI~sY~~aLkl--kPDfp 490 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKL--KPDFP 490 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHcc--CCCCc
Confidence 9999999999999999999975 67654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-22 Score=182.20 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=229.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC---HhhHHHHHHHHHH
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT---PKSYITVLAILVE 132 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 132 (485)
....+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888887654 667788888888888888888888888876421111 2456777888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHh
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 208 (485)
.|++++|..+|+++.+.. +++..++..+...+... |++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 888888888888887653 34566777777777777 888888888888877643322 224556777788889999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+|.+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+.+......++..++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988887753 234566777888888899999999999988876433234567788888999999999999999888
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD---IGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 763 45556678888888999999999999888776 5777788877776664 4588889999998888766666
Q ss_pred cc
Q 011463 366 RL 367 (485)
Q Consensus 366 ~~ 367 (485)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 55
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-20 Score=177.93 Aligned_cols=384 Identities=12% Similarity=0.094 Sum_probs=288.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.++.+|+.---.|....... ..--.+..-...++..+.+.|++++|..+++......+. +...+..++.+....|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKV-RDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhh-hhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCC
Confidence 3567888988777777665211 111122334556678888999999999999999998877 56677777788888999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIF 179 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~ 179 (485)
+++|+..|+++.+.. |.+...+..+...+...|++++|...++++.+.. |+ ...+..+...+... |++++|...+
T Consensus 92 ~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~-g~~~eA~~~~ 167 (656)
T PRK15174 92 PDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLM-DKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHC-CChHHHHHHH
Confidence 999999999999875 5567888889999999999999999999999854 54 45566666666666 9999999999
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
+.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.
T Consensus 168 ~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~ 244 (656)
T PRK15174 168 RTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LD 244 (656)
T ss_pred HHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 988776433 33344333 3478899999999999998776433344455556778889999999999999998875 44
Q ss_pred CHhhHHHHHHHHHcCCChHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQ----AMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYG 335 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (485)
+...+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|...+++..... +.+...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 67778888999999999985 89999999887443 67788899999999999999999999988864 44566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
.+..++.+.|++++|...++++.+. .|+...+. ..+...+... +.++|...|++..+..+.-.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~------~~~a~al~~~G~~deA~~~l~~al~~~P~~~-------- 386 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLARE--KGVTSKWN------RYAAAALLQAGKTSEAESVFEHYIQARASHL-------- 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH------HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--------
Confidence 8889999999999999999998874 35433221 1223344444 77788888877776643311
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011463 415 TCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
...+++|...+.+..+.
T Consensus 387 -----~~~~~ea~~~~~~~~~~ 403 (656)
T PRK15174 387 -----PQSFEEGLLALDGQISA 403 (656)
T ss_pred -----hhhHHHHHHHHHHHHHh
Confidence 23445566666666654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-21 Score=178.69 Aligned_cols=306 Identities=13% Similarity=0.062 Sum_probs=251.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSIC 92 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 92 (485)
......+...|++++|+..|+++. ...|.+..++..++..+...|++++|..+++.+......++ ...+..++
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEML----KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH----hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345667778999999999999999 23456778899999999999999999999999987643221 24678889
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhc
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKN 168 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~ 168 (485)
..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763 456788999999999999999999999999886532221 1234455556666
Q ss_pred CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
|++++|...++++.+... .+...+..+...+.+.|++++|.+.|+++...+......+++.+..+|...|++++|...
T Consensus 194 -~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 194 -GDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred -CCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988642 356788889999999999999999999998764333346678899999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhHC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK---EGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 325 (485)
++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.
T Consensus 272 l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9999886 456666788999999999999999999998886 5677788888877664 55899999999999988
Q ss_pred CCCCCHH
Q 011463 326 GLKPDAG 332 (485)
Q Consensus 326 ~~~~~~~ 332 (485)
++.|++.
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 7777776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-19 Score=177.52 Aligned_cols=419 Identities=10% Similarity=0.042 Sum_probs=257.7
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++....-.+.+....|+.++|++++..+....+ .+...+..+...+.+.|++++|.++|++..+.. |.+...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334444445555666666666666666654322 234445666666666666666666666665542 334555555556
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
++...|++++|...++++.+.. |+...+..+...+... |+.++|+..++++.+..+. +...+..+..++...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~-g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRA-GRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 6666666666666666665542 3222233333344444 6666666666666665322 4444445555555666666
Q ss_pred HHHHHHHHHHHCCCCCCh------hhHHHHHHHHH-----ccCCH---HHHHHHHHHHHhC-CCCCCHh-hHH----HHH
Q 011463 209 EAKELFKEMETKACSPTV------VTYTSLINGLC-----QSKSV---EEAMRLFEEMRSK-GVEPNVF-TYS----SLM 268 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~ 268 (485)
.|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 66666554432 1110 01111122211 12233 6677777777754 1122221 111 113
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC---CHHhHHHHHHHHHhc
Q 011463 269 DGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP---DAGLYGKIISCFCDI 344 (485)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 344 (485)
.++...|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++....... .......+..++.+.
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3445678899999999998876532 221 22235668888899999999999877643111 123456666678889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCc-cccc--------chhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 345 GKYQEAANFLDEMVLGGITPNR-LTWS--------LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
|++++|.++++++.+.. |.. ..+. ....+.......+... +.++|++.++++....+. +...+..++
T Consensus 324 g~~~eA~~~l~~~~~~~--P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA 400 (765)
T PRK10049 324 ENYPGALTVTAHTINNS--PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYA 400 (765)
T ss_pred ccHHHHHHHHHHHhhcC--CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 99999999999887642 211 1110 0011222455555666 999999999999988766 688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhccc
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQN 482 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 482 (485)
..+...|++++|++.++++.+. .|+ ...+...+..+.+.|++++|...++++++..+..+.+.-++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999986 465 45566677788899999999999999999988877775443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-18 Score=167.12 Aligned_cols=447 Identities=12% Similarity=0.035 Sum_probs=327.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
.-+-...++|+++.|+..|++++ ...|.++ ..+ .++..+...|+.++|+..+++..... +.+......+...+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL----~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEES----KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH----hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 34566788999999999999999 2333332 344 78888889999999999999998322 12344444456789
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++.... |+...+..++..+... ++..+|
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~-~~~~~A 188 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRAT-DRNYDA 188 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhc-chHHHH
Confidence 99999999999999999875 4567778888899999999999999999998854 7766664444443333 666669
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh------HHHHHHHH-----HccCC---
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT------YTSLINGL-----CQSKS--- 241 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~ll~~~-----~~~~~--- 241 (485)
++.++++.+..+. +...+..+..++.+.|-...|.++.++-... ..+.... ...+++.- ....+
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 9999999998533 7788888999999999999998877764322 1111100 11111110 01123
Q ss_pred HHHHHHHHHHHHhC-CCCCC-HhhH----HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011463 242 VEEAMRLFEEMRSK-GVEPN-VFTY----SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 242 ~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 315 (485)
.+.|+.-++.+... +..|. ...| .-.+-++...|++.++++.++.+...+.+....+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 34455555555542 11232 2222 233457788999999999999999887665666888999999999999999
Q ss_pred HHHHHHHhHCC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-ccccc--------chhhhHHHHHH
Q 011463 316 VEILDRMKLQG-----LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWS--------LHIRIHNTVVQ 381 (485)
Q Consensus 316 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~l~~ 381 (485)
..++..+.... .+++......|.-++...+++++|..+++++.+. .|- ...+. --.......+.
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 99999986643 1233444678899999999999999999999873 221 00000 11233445555
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHH
Q 011463 382 GLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMR 459 (485)
Q Consensus 382 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 459 (485)
.+... +..+|++.++++....|. |......+.+.+...|.+.+|.+.++.+... .|+ ..+....+.++...|+++
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHH
Confidence 56666 999999999999988777 8999999999999999999999999877765 454 455666788888999999
Q ss_pred HHHHHHHHHHHcCCCccchhc
Q 011463 460 QAAELLLLELMNKCVEAEVDI 480 (485)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~ 480 (485)
+|.....++++..++.+++.-
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHhhCCCchhHHH
Confidence 999999999998888777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-18 Score=171.23 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=114.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
...|++++|+..|+.++ ...|.++.++..++..|...|++++|+..+++..+.++. |...+..+.. .++++
T Consensus 55 ~~~Gd~~~A~~~l~~Al----~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~----i~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIH----QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAA----IPVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHH----hccCh
Confidence 34489999999999988 344566888888889999999999999999998887653 4444443322 27777
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHH----------------------------------------HHHHHHcCCHHHHHHH
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITV----------------------------------------LAILVEENQLKLAFRF 142 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~~~~~~~~~a~~~ 142 (485)
+|..+++++.+.. |-+..++..+ ...|...|++++|+++
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 7778887776653 2223333222 4445555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+.++.+.+. .+......+-..+....++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 205 YNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 666665541 2222233333333331133 444444332 1223666777888889999999999999998753
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-19 Score=174.19 Aligned_cols=409 Identities=9% Similarity=0.046 Sum_probs=303.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+++....|+.++|+++|+.+. ...+.+...+..+...+...|++++|.+++++++...+. +...+..++..+...
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~----~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~ 96 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYR----VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 466788999999999999998 223556667999999999999999999999999988665 677888899999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA-SLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~a~~ 177 (485)
|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+.. |+.. .+..+...+... +..+.|++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~-~~~e~Al~ 171 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNN-RLSAPALG 171 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CChHHHHH
Confidence 99999999999998874 45666 8888999999999999999999999965 5543 344455555555 89999999
Q ss_pred HHHhhhhCCCCCCH------HhHHHHHHHHH-----HcCCH---hHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHH
Q 011463 178 IFREMPNRGCTPDS------YTYGTLINGLC-----RLGKI---YEAKELFKEMETK-ACSPTVV-TYT----SLINGLC 237 (485)
Q Consensus 178 ~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~ll~~~~ 237 (485)
.++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 172 ~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 99877652 221 11222233222 22234 6788888888754 1222221 111 1134456
Q ss_pred ccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHH
Q 011463 238 QSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP---NIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 313 (485)
..|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+....... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999987532 322 22335778999999999999999988753221 1234566677889999999
Q ss_pred HHHHHHHHHhHCCC-----------CCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 314 EAVEILDRMKLQGL-----------KPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 314 ~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
+|..+++.+..... .|+ ...+..+...+...|+.++|+++++++... .|+... ++..+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~------l~~~l 399 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQG------LRIDY 399 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH------HHHHH
Confidence 99999999887531 122 234566778889999999999999999874 355432 23366
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
...+... ++++|++.++++....+. +...+...+..+...|++++|.++++++++. .|+......+-..+
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 6666666 999999999999998765 5667777888899999999999999999986 67766555544443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-18 Score=156.75 Aligned_cols=453 Identities=13% Similarity=0.066 Sum_probs=311.6
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
..+.....|...+.-.|+++.+..+.+.+.... ..-+.-...|..++++|...|+++.|...|.+.......-....+.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 356666777888888888888888888887321 0111124467888888888899999988888888775442244556
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
-+.+.|.+.|+.+.+...|+.+.+.. |.+..+...+...|+..+ ..+.|..++.+..+.- +.|...|-.+...+
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 67788888888888888888888763 455667777777777664 4567777777766643 34455555555444
Q ss_pred HhcCCChHHHHHHHHhhh----hCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCh------hhHHHH
Q 011463 166 CKNSGTMDAAFKIFREMP----NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTV------VTYTSL 232 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l 232 (485)
- . ++...++.+|..+. ..+..+.+...|.+...+...|+++.|...|...... ...++. .+--.+
T Consensus 425 e-~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 425 E-Q-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred H-h-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 3 3 56666676665544 3444567788888888888889999988888887654 112222 233345
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKL 312 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 312 (485)
....-..++.+.|...+..+.+.. +.=+..|-.++......+...+|...+..+....- .++..++.+...+.+...+
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhh
Confidence 566666778888888888888762 22233344444333345778888888888877633 3666777777788888888
Q ss_pred HHHHHHHHHHhHCC-CCCCHHhHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 313 QEAVEILDRMKLQG-LKPDAGLYGKIISCFC------------DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 313 ~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
..|.+-|......- ..+|..+...|...|. ..+..++|+++|.++++.. +.|... .|.+
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yA-------ANGI 652 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYA-------ANGI 652 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhh-------ccch
Confidence 88877666655431 2346666666665444 2345678888888887743 112111 2244
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCc
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 457 (485)
.-.++.. ++..|..+|.++.+...+ ...+|-.+..+|..+|++..|++.|+...+. .-..+......|..++.+.|.
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 4455555 899999999999876443 5567888999999999999999999988876 323456677788899999999
Q ss_pred HHHHHHHHHHHHHcCCCccch
Q 011463 458 MRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~~ 478 (485)
+.+|.+.+.+++...+.++.|
T Consensus 732 ~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHhCCccchH
Confidence 999999999999887777766
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=160.72 Aligned_cols=405 Identities=10% Similarity=-0.061 Sum_probs=295.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+...+..+.+.|++++|+..|++++... |+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35567888999999999999999999875 467789999999999999999999999999875 446788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--------------------------
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-------------------------- 185 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 185 (485)
..|++++|...|..+....- .+......++...... .....+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLKK-FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999998877665431 1111111222111111 1111111111110000
Q ss_pred -CCCCC-HHhHHHHHHHH---HHcCCHhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011463 186 -GCTPD-SYTYGTLINGL---CRLGKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258 (485)
Q Consensus 186 -~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (485)
...+. ...+..+...+ ...+++++|.+.|++..+.+ .+.....+..+...+...|++++|+..+++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 00000 00111111111 22368999999999998764 22345678888888999999999999999999873 3
Q ss_pred CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHH
Q 011463 259 PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKII 338 (485)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 338 (485)
.....|..+...+...|++++|...++.+++... .+..++..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 3466788888899999999999999999988743 367889999999999999999999999999875 45677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhh------HH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLT------YS 411 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~------~~ 411 (485)
.++.+.|++++|+..+++..+. .|+.. .+++.+...+... ++++|...|++.....+..+... ++
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~--~P~~~------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKN--FPEAP------DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 9999999999999999999874 35432 2233666777777 99999999999988754322211 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
..+..+...|++++|.+++++..+.. +.+...+..++..+.+.|++++|+++++++++...
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 22233445799999999999998763 33445688899999999999999999999988643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-18 Score=156.90 Aligned_cols=442 Identities=12% Similarity=0.101 Sum_probs=304.7
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhh
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..+..++.++..+- ...+.||.+.+.|...+.-.|+++.+..+...+...... .-.+.|..+.++|...|++++
T Consensus 250 ~s~~~~~~ll~~ay----~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAY----KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHHH----hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence 34555666666555 233567777788888888888888888888877765421 123457778888888888888
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----ChHHHHHHH
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG----TMDAAFKIF 179 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~~a~~~~ 179 (485)
|...|.+.....-.-....+.-+.+.+.+.|+.+.+...|+...+.. |+..-...++..+....+ ..+.|..++
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 88888877765311113445667788888888888888888888754 666555555554443312 456777777
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH----HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME----TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
....+.- +.|...|-.+...+....-+ .++..|.... ..+..+.....|.+.......|+++.|...|......
T Consensus 404 ~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 404 GKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 7766653 33777777777766554443 3366665543 3444567778888888888888988888888887654
Q ss_pred ---CCCCCH------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 256 ---GVEPNV------FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 256 ---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
...++. .+--.+...+-..++.+.|.+.|..+++..+. =...|--++......++..+|...++.....+
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 112222 22334556666778888888888888876321 12233333323334567788888888877654
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC---------ChhHHHHHHHH
Q 011463 327 LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---------DPNRAFQVYLS 397 (485)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~a~~~~~~ 397 (485)
..++..+..+...+.....+..|.+-|....+.-... ..+| .++.+.|..+..+... ..++|+++|.+
T Consensus 561 -~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~-~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k 637 (1018)
T KOG2002|consen 561 -SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK-TDAY-SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK 637 (1018)
T ss_pred -cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC-Cchh-HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence 4567777777878888888888888777776542222 1222 2445555555554432 34778899999
Q ss_pred HHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+++..+. |...-|.+.-+++..|++.+|..+|.+..+.. .....+|..+..+|...|++..|++.|+.++++-....+
T Consensus 638 vL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 638 VLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 9988777 88888999999999999999999999999873 345678889999999999999999999999999887777
Q ss_pred hhcc
Q 011463 478 VDIQ 481 (485)
Q Consensus 478 ~~~~ 481 (485)
+++.
T Consensus 716 ~~vl 719 (1018)
T KOG2002|consen 716 SEVL 719 (1018)
T ss_pred HHHH
Confidence 6653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-16 Score=154.38 Aligned_cols=434 Identities=12% Similarity=0.037 Sum_probs=301.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh-cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVS-ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
+.+++.+.|+|++|++++..+. +.+ +.+......+..+|.. .++ +.+..+++... ..++..+..++..|.
T Consensus 188 ~~rlY~~l~dw~~Ai~lL~~L~---k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi 258 (987)
T PRK09782 188 LLQRAIYLKQWSQADTLYNEAR---QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHhCHHHHHHHHHHHH---hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH
Confidence 3788999999999999999999 333 5556667777778877 466 77777755322 247888999999999
Q ss_pred ccCChhhHHHHHHHHHhcCCC-CCHhhHH------------------------------HHHHHHHHcCCHHHHHHHHH-
Q 011463 97 RVHRPLDAMRVFDKMKEFGCE-PTPKSYI------------------------------TVLAILVEENQLKLAFRFYR- 144 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~- 144 (485)
+.|+.++|.++++++...... |...+|. .++..+.+.++++.+.++..
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999987653211 2222221 11344455555555444422
Q ss_pred ----------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHHhH
Q 011463 145 ----------------------------HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSYTY 194 (485)
Q Consensus 145 ----------------------------~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 194 (485)
.|.+.. +-+......+--...+. |+.++|.++++..... +..++....
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQN-GQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-ccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 111100 01222222222233455 9999999999998773 122344444
Q ss_pred HHHHHHHHHc-------------------------CCHhHHHHHHHHHHHC-C-CCC--ChhhHHHHHHHHHccCCHHHH
Q 011463 195 GTLINGLCRL-------------------------GKIYEAKELFKEMETK-A-CSP--TVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 195 ~~l~~~~~~~-------------------------~~~~~a~~~~~~~~~~-~-~~~--~~~~~~~ll~~~~~~~~~~~a 245 (485)
.-++..|.+. |+..++...+...... + .++ +...|..+..++.. ++.++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 4555555443 3344444444444332 1 133 56677878877776 888899
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|++++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9988888766 355544444455567899999999999998665 334445666777888999999999999999886
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCc
Q 011463 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~ 404 (485)
. +.....+..+.......|++++|...+++..+.. |+...+. .+...+.+. ++++|...+++.....+.
T Consensus 572 ~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~-------~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 572 G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYV-------ARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHH-------HHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 4 3344444444445556799999999999998754 5543333 666777777 999999999999998776
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (485)
+...++.+..++...|++++|++.+++..+.. +-+...+..+..++...|++++|+..++++++.......+.
T Consensus 642 -~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 642 -NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 77888999999999999999999999999862 34566788899999999999999999999999876555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-16 Score=149.30 Aligned_cols=413 Identities=11% Similarity=0.141 Sum_probs=300.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
-++.++...|+.++|+..++++. ...+.+......++..+...|++++|+++|+++.+..+. ++..+..++..+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHh
Confidence 56777888899999999999998 122333444555577899999999999999999999877 6788888899999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. +-+...+..+...+.+. |-...|.
T Consensus 148 ~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~-~~~~~a~ 223 (822)
T PRK14574 148 DAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRN-RIVEPAL 223 (822)
T ss_pred hcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCcHHHH
Confidence 999999999999999886 4666666555555555677767999999999975 23456667777777777 8888888
Q ss_pred HHHHhhhhCCCCCCHHhH------HHHHHHH-----HHcCCH---hHHHHHHHHHHHC-CCCCCh-hhH----HHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTY------GTLINGL-----CRLGKI---YEAKELFKEMETK-ACSPTV-VTY----TSLINGL 236 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~ll~~~ 236 (485)
++..+-... +.+....+ ..+++.- ....++ +.|+.-++.+... +..|.. ..| .-.+-++
T Consensus 224 ~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 224 RLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 877765432 11111111 1111100 011223 3445555555442 111222 222 2345678
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC
Q 011463 237 CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-----RPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~ 311 (485)
...+++.++++.++.+...+.+....+-..+..+|...+++++|..+++.+..... .++......|.-++...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 88999999999999999888766677888999999999999999999999977532 2233335778899999999
Q ss_pred HHHHHHHHHHHhHCCC-----------CCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 312 LQEAVEILDRMKLQGL-----------KPDA---GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+++|..+++.+.+... .|+. ..+..++..+...|+..+|.+.++++... .|....+. .
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~------~ 454 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLR------I 454 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH------H
Confidence 9999999999987421 1221 23445677788999999999999999874 45544332 2
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
.....+... .+.+|.+.++......+. +..+....+.++...|++++|.++.+.+.+. .|+......+-.
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 555555566 999999999888877655 6777788888999999999999999999886 676665554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-16 Score=131.03 Aligned_cols=426 Identities=13% Similarity=0.113 Sum_probs=323.9
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
..++++++|+.+|+.++ ..-..+...|...+..-.+......|..+++++...-|..+ ..|...+..--..|+..
T Consensus 84 esq~e~~RARSv~ERAL----dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERAL----DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HhHHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccH
Confidence 45788899999999999 34456777888889999999999999999999998865533 35666676777889999
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
.|.++|++..+. .|+..+|++.+..-.+-+.++.|..+|++..- +.|+..+|-.....=-++ |....+..+|+..
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~-g~~~~aR~VyerA 233 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH-GNVALARSVYERA 233 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc-CcHHHHHHHHHHH
Confidence 999999999985 69999999999999999999999999999987 459999998888877777 9999999999998
Q ss_pred hhC-CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHH--------HH
Q 011463 183 PNR-GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRL--------FE 250 (485)
Q Consensus 183 ~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~--------~~ 250 (485)
.+. |- ..+...+.+....-.++..++.|.-+|+-.+.. ++.+ ...|.....---+-|+....... ++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 875 21 113344555555556778889999999888775 2222 23344433333344554333322 33
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC-hh-hHHHH----HH-H---HHhcCCHHHHHHHHH
Q 011463 251 EMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN-IV-TYSTL----LN-G---LCKEGKLQEAVEILD 320 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l----~~-~---~~~~~~~~~a~~~~~ 320 (485)
.+.+.+ +-|-.+|--.+..-...|+.+...++|++++.. ++|- .. .|... ++ + =....+.+.+.++++
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444443 557778888888888899999999999999887 4442 11 11111 11 1 135689999999999
Q ss_pred HHhHCCCCCCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFC----DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVY 395 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~ 395 (485)
..++. +|-...||..+--.|+ ++.+...|.+++.... |.-|....|. ..+..-... +++.+..+|
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk-------~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFK-------GYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHH-------HHHHHHHHHhhHHHHHHHH
Confidence 98884 4556666666554444 6788999999998876 4567777776 666665566 899999999
Q ss_pred HHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
++.++.++. +..+|......-...|+++.|..+|+-+++.. .......|.+.+..=...|.++.|..++++.++..
T Consensus 461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 999999877 88899998888889999999999999999862 22234567777777778999999999999999864
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-16 Score=129.95 Aligned_cols=409 Identities=15% Similarity=0.188 Sum_probs=292.1
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh--ccCChhhH-HHHHHHHHhc-------------
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG--RVHRPLDA-MRVFDKMKEF------------- 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~------------- 114 (485)
++-+.++. .+.+|.+.++--+|+.|...+.+.+...-..|++.-+ ...++--+ .+.|-.|...
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 34444444 3567888888888888888887777766555554322 22221111 1112111111
Q ss_pred ------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC
Q 011463 115 ------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT 188 (485)
Q Consensus 115 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 188 (485)
-.|.+..++..+|.++++-...+.|.++|++......+.+..++|.++.+-.- ....+++.+|......
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh-----hccHHHHHHHHHhhcC
Confidence 13557889999999999999999999999999988888999999999987443 3347899999999999
Q ss_pred CCHHhHHHHHHHHHHcCCHhHH----HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH-HHHHHHHHHhC----CC--
Q 011463 189 PDSYTYGTLINGLCRLGKIYEA----KELFKEMETKACSPTVVTYTSLINGLCQSKSVEE-AMRLFEEMRSK----GV-- 257 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~-- 257 (485)
||..|+|+++++..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++.++... .+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999988764 6778889999999999999999999998888744 55555555432 12
Q ss_pred --CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 258 --EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPN---IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 258 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
+-|...|...+..|.+..+.+-|..+...+.... +.|+ ..-|..+....++....+.....++.|+-.-+-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2255667888899999999999998887776531 2222 234566777788888999999999999887777
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC---------------------C
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT---------------------D 387 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~ 387 (485)
|+..+...++++..-.|.++-..++|.++...|...+..... -++..+++. +
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e-------eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE-------EILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH-------HHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999888766433222111 222222221 1
Q ss_pred hhHHHH-HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCcHHHHH
Q 011463 388 PNRAFQ-VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGC----LPDEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 388 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
..++.+ .-.++.+ .+.+....+.++-.+.+.|..++|.+++..+.+.+- .|.......++..-.+.+.+..|+
T Consensus 504 ~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111111 1122232 234566778888889999999999999999966532 234444446677777889999999
Q ss_pred HHHHHHHHcCCC
Q 011463 463 ELLLLELMNKCV 474 (485)
Q Consensus 463 ~~~~~~~~~~~~ 474 (485)
.+++-|...+..
T Consensus 582 ~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 582 EVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHcCch
Confidence 999999877643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-14 Score=131.60 Aligned_cols=331 Identities=11% Similarity=0.094 Sum_probs=260.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
++.+...|++++|.+++..++ ...|.++..|..|..+|-..|+.+.+...+-.+...+++ |...|..+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvI----kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVI----KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHH----HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 455666799999999999999 455778889999999999999999999998888887776 779999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCChHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~ 174 (485)
|++..|.-.|.+.++.. |++...+-.-...|-+.|+...|.+-|.++.....+.+. .....++..+... ++-+.
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~-~~~e~ 298 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH-NERER 298 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh-hHHHH
Confidence 99999999999999975 566667777788899999999999999999986522222 2233345555555 66789
Q ss_pred HHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---------------------------Ch
Q 011463 175 AFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP---------------------------TV 226 (485)
Q Consensus 175 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~ 226 (485)
|.+.++..... +-..+...++.++..+.+...++.+......+......+ +.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99998887763 233466778899999999999999998888876622111 22
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKG--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 227 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
.. ..+.-+....+..+....+...+.+.+ +.-+...|.-+..++...|.+.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22 122233444444444444455555554 344567788899999999999999999999998866667889999999
Q ss_pred HHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
+|...|.++.|...++...... +.+......|...+-+.|+.++|.+.+..+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999998864 4566777788888999999999999999875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-14 Score=120.02 Aligned_cols=430 Identities=13% Similarity=0.153 Sum_probs=295.1
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHH--hcCCcchH-HHHHHHHhhcC----------
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV--SANQFRPA-EDLLDRVNKEK---------- 80 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~---------- 80 (485)
+...+++ +..+|.+.++--+|+.|. +++++.++..-..+++.-+ ...++.-| ++.|-.|...+
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMR---SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHH---hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 4444444 455899999999999999 6788888776655554322 22222211 11111111111
Q ss_pred ---------CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 81 ---------CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 81 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.+.+..++..+|.+.++--..+.|.+++++..+...+.+..+||.+|.+-.-... .+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhc
Confidence 1226778999999999999999999999999887778899999999977654333 789999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCChHH----HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH-HHHHHHHHHHC----CC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDA----AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE-AKELFKEMETK----AC 222 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~ 222 (485)
.||..|+|.++.+..+. |+++. |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++.++... ..
T Consensus 270 ~Pnl~TfNalL~c~akf-g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKF-GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999988 98765 56788889999999999999999999998888744 55566665432 12
Q ss_pred ----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCC---HhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 223 ----SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----VEPN---VFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 223 ----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+.+...|...+..|....+.+-|.++..-+.... +.|+ ..-|..+..+.++....+.-...|+.+.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2244567778888889999999988877665431 2333 2345667778888888999999999998887
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC-CH--------H-----HHHHHHHHH
Q 011463 292 HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG-KY--------Q-----EAANFLDEM 357 (485)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~~~~ 357 (485)
.-|+..+...++++....|.++-.-++|.+++..|...+......++..+++.+ .. . -|..+++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998876656666666666666544 11 0 111111111
Q ss_pred HHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCC-CccchhhHH---HHHHHHHhcCCHHHHHHHHHH
Q 011463 358 VLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS-ISVDSLTYS---SLITCFCKKGDIHKSARIVDE 432 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 432 (485)
...-..-....|. ..-.+.++-.+.+. ..++|.+++..+.+.+ --|-....| .+++.-...++...|..+++-
T Consensus 509 e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1100000011111 11112444445556 8999999999986433 233334444 566777788999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHh
Q 011463 433 LVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 433 ~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
|...+.+.-...-+.+...|.-
T Consensus 587 a~~~n~~~~E~La~RI~e~f~i 608 (625)
T KOG4422|consen 587 ASAFNLPICEGLAQRIMEDFAI 608 (625)
T ss_pred HHHcCchhhhHHHHHHHHhcCc
Confidence 9876533322233334444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-16 Score=131.08 Aligned_cols=420 Identities=14% Similarity=0.076 Sum_probs=277.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhH-HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHH----HHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTF-SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI----FLSI 91 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l 91 (485)
.+++.|....-..+|+..|+-++ +...-|+...+ ..+...+.+.+.+..|++.++..+..-|..+-.+ .+.+
T Consensus 206 nlaqqy~~ndm~~ealntyeiiv---knkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIV---KNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhh---cccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34566677778888999998888 45555665433 3455778888899999999988887755444433 4444
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------CCCHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI------------QPCVASLN 159 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~ 159 (485)
...+.+.|.++.|+..|+...+. .|+-.+-..++-++...|+.++..+.|.+|+.... .|+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 45677889999999999988775 47776666666677778888888999988876422 13333333
Q ss_pred HHHH-----HHHhcCCChHHHHHHHHhhhh---CCCCCCHH-----h--------H--------HHHHHHHHHcCCHhHH
Q 011463 160 VLIK-----ALCKNSGTMDAAFKIFREMPN---RGCTPDSY-----T--------Y--------GTLINGLCRLGKIYEA 210 (485)
Q Consensus 160 ~ll~-----~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~-----~--------~--------~~l~~~~~~~~~~~~a 210 (485)
..+. ..-+. +-..|.+..-...+ --+.|+-. + + -.-..-+.+.|+++.|
T Consensus 361 eai~nd~lk~~ek~--~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKE--NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHhhHHHHHHHHh--hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 2221 11111 11122222211111 01111100 0 0 1113457788888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHH------------------------------------HHHHHccCCHHHHHHHHHHHHh
Q 011463 211 KELFKEMETKACSPTVVTYTSL------------------------------------INGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l------------------------------------l~~~~~~~~~~~a~~~~~~~~~ 254 (485)
+++++-+.+..-+.....-+.| .......|++++|...+++...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 8888776554221111111111 0112235788888888888876
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLY 334 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 334 (485)
.+-......|| +.-.+...|+.++|++.|-.+... ...+..+...+...|....+...|++++.+.... ++.|+.++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53222222333 233466789999999988876554 2337777888888898899999999999887654 57789999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 335 GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 335 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
..+...|-+.|+-.+|.+.+-+--+. .+.+.. ...++...|... -.++++.+|++..-. .|+..-|..+
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie-------~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlm 665 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIE-------TIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLM 665 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchH-------HHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHH
Confidence 99999999999999998876543321 122333 333777777777 788999999987653 6799999988
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCc
Q 011463 414 ITCF-CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 414 ~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 457 (485)
+..| .+.|++.+|..+++...+. ++-|...+..+++.+...|-
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 8766 4689999999999999876 67788888888888877773
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-15 Score=127.20 Aligned_cols=405 Identities=12% Similarity=0.037 Sum_probs=275.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
...+-+.++|.+++|++.|.+++ ...|+ +.-|....-+|...|+|+...+..-..++.+|. -+..+..-..++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI-----~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI-----ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH-----hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 34567889999999999999999 44666 888999999999999999999999999988655 456777777888
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc-----
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG--IQPCVASLNVLIKALCKN----- 168 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~----- 168 (485)
-..|++.+|+.=..-..-.+--.+..+--.+=+.+-+.+ ...+.+-+. +.+ +-|+.....+....+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k---~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLK---ENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhc---ccCCCCCCcHHHHHHHHhhccccccccc
Confidence 888998888754433322111112221111111111111 112222221 111 224444333333332210
Q ss_pred ----------------------CCChHHHHHHHHhhhhC---CCCCC---------HHhHHHHHHHHHHcCCHhHHHHHH
Q 011463 169 ----------------------SGTMDAAFKIFREMPNR---GCTPD---------SYTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 169 ----------------------~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
...+..|...+.+-... ....+ ..+.......+.-.|+...|..-|
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 01222222222221110 01111 112222223345678899999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
+..++....+ ...|..+..+|....+.++....|....+.+ +-++.+|..-.+.+.-.+++++|..-|++.++..+.
T Consensus 350 ~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe- 426 (606)
T KOG0547|consen 350 DAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE- 426 (606)
T ss_pred HHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-
Confidence 9998874432 3337788889999999999999999999886 447778888888888889999999999999987443
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
+...|-.+.-+..+.+++++++..|++.++. +|.-+.+|+.....+...++++.|.+.|+...+....-+....+...-
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 5666766666777889999999999999887 466788999999999999999999999999987532222222222233
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 375 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
++-+++..-.+.++..|..++++..+..++ ....|..|...-.+.|+.++|+++|++....
T Consensus 506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 506 VHKALLVLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhHhhhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444333344999999999999998777 6788999999999999999999999987754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-13 Score=121.67 Aligned_cols=260 Identities=12% Similarity=0.124 Sum_probs=121.7
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH----hhcCCCCCHHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV----NKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~ 95 (485)
.++.+..-++.|..+++.+. +.+|.++..|..-...--..|+.+....++.+. ...|+..+...|..=...|
T Consensus 414 lAlarLetYenAkkvLNkaR----e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAR----EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34455555666666666655 455556666655555555556555555554432 2334444555555555555
Q ss_pred hccCChhhHHHHHHHHHhcCCCC--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEP--TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
-..|..-.+..+....+..|+.- -..+|..-...|.+.+.++-|..+|...++. .|.....-.-...+-+..|..+
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHH
Confidence 55555555555555544444322 1334555555555555555555555555442 2332222222222333335555
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+|+++...-. -....|......+-..|+...|..++....+... .+...|...+..-.....++.|..+|.+..
T Consensus 568 sl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 55555555544321 1333444444444444555555555554444321 134444444444445555555555554444
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
.. .|+...|.--+...--.+..++|.++++..++
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 32 33333333333333334444444444444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-13 Score=127.06 Aligned_cols=371 Identities=13% Similarity=0.144 Sum_probs=258.5
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.....+..+...|++++|.+++.++++..+. +...|..|...|-..|+.+++...+-.....+ |.|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3444455566779999999999999999876 78899999999999999999999887776654 557789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHH----HHHHHHHHcCCH
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYG----TLINGLCRLGKI 207 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 207 (485)
+.|++++|.-+|.+.++.. +++...+-.-...+-+. |+...|..-|.++.....+.|..-+. ..++.+...++-
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~-G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKT-GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHh-ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999865 23333333344444455 99999999999999885433433333 345567777888
Q ss_pred hHHHHHHHHHHHC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---------------------------CC
Q 011463 208 YEAKELFKEMETK-ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---------------------------EP 259 (485)
Q Consensus 208 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~ 259 (485)
+.|.+.++..... +-..+...++.++..+.+...++.+......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 9999888887663 2234566788888999999999999888877766221 22
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKR--HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (485)
+..++ -++-++.+....+....+........ +.-++..|.-+..++...|++.+|+.+|..+.....--+...|-.+
T Consensus 377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 22221 22333444455555555555555554 3335667788888888888888888888888776444456688888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--------CCccchh
Q 011463 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--------SISVDSL 408 (485)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~~ 408 (485)
.++|...|.+++|.+.++.++.. .|+...-. -.+...+... ++++|.+.++.+... +..|+..
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~R------i~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL--APDNLDAR------ITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCchhhh------hhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 88888888888888888888773 45543332 1333334444 777887777775422 2223333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
..-...+.+.+.|+.++-+.+-..|+.
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445556677777776666666664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-14 Score=130.07 Aligned_cols=283 Identities=11% Similarity=0.054 Sum_probs=201.2
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH--HHHHHHHccCCHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT--SLINGLCQSKSVEEAMR 247 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~ 247 (485)
|+++.|.+.+....+.... ....+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 98 Gd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 7788777777665554211 1222333344446778888888888777664 33432222 23556777788888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI-------VTYSTLLNGLCKEGKLQEAVEILD 320 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 320 (485)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877764 335666777777888888888888888888776544222 122233333334455666667776
Q ss_pred HHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMR 399 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~ 399 (485)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. .|+... ..+...... +++++.+..++..
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l---------~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL---------VLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH---------HHHHhhccCCChHHHHHHHHHHH
Confidence 66443 2557788888899999999999999999888873 343321 233344444 8888999999998
Q ss_pred hCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..+. |+..+..+...|.+.|++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 322 k~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 322 KQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88776 7788899999999999999999999999986 799999999999999999999999999998774
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-14 Score=130.45 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNI--VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
++.+.+.+.++...+..+. |+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4445555555555444221 33 34445555555566666666665532222224555555555556666666666666
Q ss_pred HHHHH
Q 011463 353 FLDEM 357 (485)
Q Consensus 353 ~~~~~ 357 (485)
++++.
T Consensus 392 ~~~~~ 396 (409)
T TIGR00540 392 MRQDS 396 (409)
T ss_pred HHHHH
Confidence 65554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-12 Score=114.93 Aligned_cols=430 Identities=15% Similarity=0.086 Sum_probs=336.8
Q ss_pred HHHHccCCHHHHHHHHHHhhhhh-cCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHh
Q 011463 20 QLIRAEKDVNKALVIFDSATAEY-ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYG 96 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 96 (485)
.+=.++|+.+...++..+.+.+. ..|+.-+...|..-...|-..|..-.+..+...++..|+.- -..+|..-.+.|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 34456888888888887766443 45777889999999999999999999999999999887652 2357888889999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.+-++-|..+|...++. ++.+...|......--..|..+....+++++...- +-....|.......... |+...|.
T Consensus 528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~a-gdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKA-GDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhc-CCcHHHH
Confidence 999999999999999886 35567788888887778899999999999998853 33444555566666666 9999999
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
.++..+.+.... +...|..-+........++.|..+|.+.... .|+...|..-+..--..++.++|.+++++..+.
T Consensus 605 ~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 999999988655 8889999999999999999999999998774 567777777777767779999999999999886
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
++.-...|-.+.+.+-+.++.+.|.+.|..-.+. .+.....|-.+...=-+.|++-+|..++++..-.+ +.+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 2333456777778888899999999988877665 44456677777777778899999999999988876 668889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLIT 415 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 415 (485)
.++.-.+.|+.+.|..+..+.++.- +.+...|. -.+...... .-......++ +. .-|+.+.-.+..
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWa-------EaI~le~~~~rkTks~DALk---kc--e~dphVllaia~ 825 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQEC-PSSGLLWA-------EAIWLEPRPQRKTKSIDALK---KC--EHDPHVLLAIAK 825 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHH-------HHHHhccCcccchHHHHHHH---hc--cCCchhHHHHHH
Confidence 9999999999999999999888753 23333332 333333322 2222222222 22 226777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 416 CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.+.....+++|.+.|.+.+..+ +....+|..+...+.+.|.-+.-.+++.++..-.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 8888999999999999999873 4456788888888899998888888888887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-14 Score=130.05 Aligned_cols=290 Identities=10% Similarity=0.013 Sum_probs=201.9
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|+++.|.+.+....+.... ....+-....+....|+++.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 98 g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888877765322 233344556677788888888888888766432222223333467777888888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHH---HhcCCHHHHHHHHHHHhHC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS-TLLNGL---CKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~ 325 (485)
+.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+..+.+...+..+...
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 8888875 336667778888888888888888888888887554 332221 111111 2223333333344444443
Q ss_pred C---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh--cC-ChhHHHHHHHHHH
Q 011463 326 G---LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC--KT-DPNRAFQVYLSMR 399 (485)
Q Consensus 326 ~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~a~~~~~~~~ 399 (485)
. .+.+...+..+...+...|+.++|.+++++..+.. |+..... + .++..+. .. +.+.+.+.+++..
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~-----~-~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS-----L-PLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch-----h-HHHHHhhhcCCCChHHHHHHHHHHH
Confidence 2 12377888889999999999999999999998853 4443210 0 1222222 23 6788888888888
Q ss_pred hCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 400 NRSISVDS--LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 400 ~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..+. |+ ....++.+.|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77555 56 6778999999999999999999995433334799998999999999999999999999997654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=124.41 Aligned_cols=384 Identities=17% Similarity=0.146 Sum_probs=264.3
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.+++.+.+++.+|++.|+-++.+- ..+..+ ....+.+...+.+.|+++.|+..|+.+.+.. |+..+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhh
Confidence 4567788999999999999988331 111111 3356777778899999999999999998874 5665555566666
Q ss_pred hccCChhhHHHHHHHHHhcCCC------------CCHhhHHHHH-----HHHHHcCC--HHHHHHHHHHHHHcCCCCCHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCE------------PTPKSYITVL-----AILVEENQ--LKLAFRFYRHMREIGIQPCVA 156 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 156 (485)
...|+.++..+.|.+|...-.. |+....+..+ .-.-+.+. .++++-.--+++.--+.|+..
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 7789999999999998764211 2222222211 11111111 111111111111111112210
Q ss_pred ---------------------HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHH-----------------
Q 011463 157 ---------------------SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLI----------------- 198 (485)
Q Consensus 157 ---------------------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------------- 198 (485)
.-..-...+.++ |+++.|.++++-+.+.+-......-+.|-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~-~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKN-GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc-cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 001112345666 88888888887776653221111111111
Q ss_pred -------------------HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH---HHHHHccCCHHHHHHHHHHHHhCC
Q 011463 199 -------------------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL---INGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 199 -------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
......|++++|.+.|++.... |..+..+| .-.+-..|+.++|+..|-++...
T Consensus 479 ad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i- 553 (840)
T KOG2003|consen 479 ADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI- 553 (840)
T ss_pred HHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-
Confidence 1112357889999999998765 33333333 33466789999999999887654
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+..+..++..+...|....+...|++++.+.... ++.|+.+.+.|...|-+.|+-..|...+-+-.+. ++-+..+...
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iew 631 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEW 631 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHH
Confidence 2347778888899999999999999999998776 6668999999999999999999998877655443 4678889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhhHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLTYSSLI 414 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 414 (485)
+..-|....-+++++.+|++..- +.|+...|. .++..|.+. ++.+|+++|+.....-+. |...+..|+
T Consensus 632 l~ayyidtqf~ekai~y~ekaal--iqp~~~kwq-------lmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflv 701 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQ-------LMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLV 701 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHH-------HHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHH
Confidence 99999999999999999998765 679999998 777777766 999999999999877555 888888899
Q ss_pred HHHHhcCC
Q 011463 415 TCFCKKGD 422 (485)
Q Consensus 415 ~~~~~~g~ 422 (485)
+.+...|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 98887774
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-14 Score=126.32 Aligned_cols=283 Identities=16% Similarity=0.151 Sum_probs=142.1
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHH-HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH--HHHHHHHHcCCHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDI-FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI--TVLAILVEENQLKLA 139 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 139 (485)
.|+++.|.+.+....+... ++.. +........+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555554433311 1111 222223334555555555555555443 23332221 223445555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH-------HhHHHHHHHHHHcCCHhHHHH
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS-------YTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 212 (485)
...++++.+.. +-+......+...+.+. |++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555555543 12233344444444444 5555555555555554322111 122233333333344444445
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 011463 213 LFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292 (485)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (485)
+++.+... .+.+......+..++...|+.++|..++++..+. +++.... ++.+....++.+++.+..+...+..+
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 55544332 2234555556666666666666666666666553 3333211 22223344666666666666665533
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 293 RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
. |+..+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 5555666666666666666666666666654 46666666666666666666666666666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=139.30 Aligned_cols=258 Identities=17% Similarity=0.171 Sum_probs=58.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCC-CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANG-FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
+..+.+.|++++|++++.... ... .+.|+..|..+.......++++.|.+.++++...+.. ++..+..++.. ..
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~---~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAA---QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 444445555555555553332 111 1223333333444444455555555555555444332 33344444444 34
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
.+++++|.++++...+. .+++..+..++..+...++++++.++++.+.... .+.+...+..+...+.+. |+.++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~ 166 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL-GDPDKAL 166 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC-CHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 45555555554444332 1334444444444555555555555555444321 122333333333333333 5555555
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG 256 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 256 (485)
+.+++..+..+. +......++..+...|+.+++.++++...+.. +.+...+..+..++...|+.++|...+++..+..
T Consensus 167 ~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 167 RDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 555555444211 34444444444555555554444444443332 2233344444445555555555555555544432
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+.|+.....+..++...|+.++|.++.+++
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -TT-HHHHHHHHHHHT---------------
T ss_pred -cccccccccccccccccccccccccccccc
Confidence 224444444444555555555555444443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=138.65 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=57.9
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
...+.+.|++++|.+++....... ++.+...|..+.......++++.|...++++...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555555555555553332222 12233444444444444555555555555554433 1233334444443 34455
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
+++|.+++....+.. ++...+..++..+... ++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555544433322 2333334444444443 55555555554443321 1223444444444445555555555555
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
++..+.. |.+......++..+...|+.+++..++....+.. +.|+..+..+..+|...|+.++|..++++...... .
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p-~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP-D 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST-T
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc-c
Confidence 5544431 1123344444444444444444444444443331 22333344444444444444444444444444321 1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
|+.....+..++...|+.++|..+..+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444444444444444444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-11 Score=104.39 Aligned_cols=425 Identities=12% Similarity=0.113 Sum_probs=310.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..=.+++.+..|+.+|+.++ ...|.-...|...+..--..|+...|.++|++-..- .|+...|.+.+..-.+-
T Consensus 114 ae~Emknk~vNhARNv~dRAv----t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRy 187 (677)
T KOG1915|consen 114 AEFEMKNKQVNHARNVWDRAV----TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRY 187 (677)
T ss_pred HHHHHhhhhHhHHHHHHHHHH----HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHh
Confidence 444567889999999999999 233333445666666667889999999999988765 58899999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCChHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA----SLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~ 174 (485)
+.++.|..+|++..-. .|++.+|......--+.|+...+..+|+...+.- -+.. .+......=.++ ..++.
T Consensus 188 keieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~q-kE~ER 262 (677)
T KOG1915|consen 188 KEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQ-KEYER 262 (677)
T ss_pred hHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999874 6999999999999999999999999999987631 1222 222222222234 77888
Q ss_pred HHHHHHhhhhCCCCCC--HHhHHHHHHHHHHcCCHhHHHHH--------HHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 011463 175 AFKIFREMPNRGCTPD--SYTYGTLINGLCRLGKIYEAKEL--------FKEMETKACSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
|.-+|+-.+..= +.+ ...|..+...--+-|+.....+. |+.+... -+.|-.+|--.++.-...|+.+.
T Consensus 263 ar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~ 340 (677)
T KOG1915|consen 263 ARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDR 340 (677)
T ss_pred HHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHH
Confidence 999998888762 222 44555555555556765544433 2333433 24577788888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHh--hHHHHH----H-H---HHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH----HhcC
Q 011463 245 AMRLFEEMRSKGVEPNVF--TYSSLM----D-G---LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL----CKEG 310 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~--~~~~l~----~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~ 310 (485)
..++++..+.. ++|-.. .|...+ + + -....+.+.+.++++..++. ++....||..+--.| .++.
T Consensus 341 Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 341 IRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHc
Confidence 99999999976 444221 122111 1 1 12478899999999999885 566777776655444 4678
Q ss_pred CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Chh
Q 011463 311 KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPN 389 (485)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 389 (485)
++..|.+++...+. ..|...+|...|..-.+.++++....++++.++-+ +.+..+|. .....-... +.+
T Consensus 419 ~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~-------kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 419 NLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS-------KYAELETSLGDTD 488 (677)
T ss_pred ccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH-------HHHHHHHHhhhHH
Confidence 99999999988774 57889999999999999999999999999999865 23444454 333333333 889
Q ss_pred HHHHHHHHHHhCC-CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hcC-------
Q 011463 390 RAFQVYLSMRNRS-ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW-----DRR------- 456 (485)
Q Consensus 390 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g------- 456 (485)
.|..+|+-+.+.. .......|-..|+.-...|.++.|..+++++++. .+-...|..+...-. +.|
T Consensus 489 RaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e 566 (677)
T KOG1915|consen 489 RARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELE 566 (677)
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhh
Confidence 9999999888653 3445677888888888999999999999999987 444456666554322 334
Q ss_pred ----cHHHHHHHHHHHHH
Q 011463 457 ----KMRQAAELLLLELM 470 (485)
Q Consensus 457 ----~~~~A~~~~~~~~~ 470 (485)
....|..+|+++..
T Consensus 567 ~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 567 ITDENIKRARKIFERANT 584 (677)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 46678888877754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-12 Score=108.43 Aligned_cols=365 Identities=14% Similarity=0.054 Sum_probs=248.7
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh-
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS- 122 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 122 (485)
.+...|+..+...+..+.+.|..+.|.+.|......-|- ....|..|..... +.+ ....+... .+.+...
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~-~W~AWleL~~lit---~~e----~~~~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPW-FWSAWLELSELIT---DIE----ILSILVVG-LPSDMHWM 228 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCc-chHHHHHHHHhhc---hHH----HHHHHHhc-CcccchHH
Confidence 444566766777777888889999999999888776443 5556666555432 222 22222221 1222111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC--CCHHhHHHHHH
Q 011463 123 -YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT--PDSYTYGTLIN 199 (485)
Q Consensus 123 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 199 (485)
---+..++-...+.+++.+-.+.....|++-+. -+.+.+..+.-+..+++.|+.+|+++.+.++- -|..+|+.++.
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~-~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSM-YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 123445566677888888888888888864444 34444444444448999999999999987321 16677877764
Q ss_pred HHHHcCCHh-HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChH
Q 011463 200 GLCRLGKIY-EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278 (485)
Q Consensus 200 ~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (485)
+-....... -|..++ .+. +--+.|...+.+-|+-.++.++|...|+...+.+ +-....|+.+..-|....+..
T Consensus 308 v~~~~skLs~LA~~v~-~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~ 381 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVS-NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTH 381 (559)
T ss_pred HHhhhHHHHHHHHHHH-Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccH
Confidence 432222211 112211 111 2245567777888888899999999999999875 335677888888999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 279 QAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
.|.+-++.+++..+. |-..|-.|.++|.-.+.+.-|+-.|++..... |.|...|.+|..+|.+.++.++|++.|.+..
T Consensus 382 AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 382 AAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999987544 88899999999999999999999999988874 6689999999999999999999999999998
Q ss_pred HCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC----CC-cc-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 359 LGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR----SI-SV-DSLTYSSLITCFCKKGDIHKSARIVD 431 (485)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 431 (485)
..|-. +...+ ..+...+-.. +..+|.+.|++..+. |. .| ...+---|..-+.+.+++++|.....
T Consensus 460 ~~~dt-e~~~l-------~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 460 LLGDT-EGSAL-------VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred hcccc-chHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 76533 22222 2677777776 888888888877652 22 21 11222224455667777777766555
Q ss_pred HHH
Q 011463 432 ELV 434 (485)
Q Consensus 432 ~~~ 434 (485)
...
T Consensus 532 ~~~ 534 (559)
T KOG1155|consen 532 LVL 534 (559)
T ss_pred HHh
Confidence 544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-14 Score=125.68 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a 104 (485)
+.++|+..|+.+. ............+.++|...+++++|.++|+.+.+..+- -+.++|.+.+-.+-+ +-+
T Consensus 334 ~~~~A~~~~~klp----~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLP----SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHhhH----HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHH
Confidence 4556666666632 233333445555666666666666666666666555421 134455544433211 111
Q ss_pred HHHH-HHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 105 MRVF-DKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 105 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
+..+ +.+.+.+ +..+.+|.++..+|.-+++++.|++.|++..+.. | ...+|..+-..+... .++|.|...|+..
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~-ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIAT-EEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhh-HHHHhHHHHHHhh
Confidence 1111 2222221 3345666666666666666666666666666532 4 444555555555554 5666666666665
Q ss_pred hhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh
Q 011463 183 PNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVF 262 (485)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 262 (485)
+..... .-..|.-|...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+.+++++...+.. |+.
T Consensus 482 l~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 482 LGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred hcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 544211 2223334455566666666666666665554221 3344444455555556666666666665554322 333
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.--..+..+...+++++|+..++++.+. ++.+..++..+...|.+.|+.+.|..-|.-+.+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3333444455555666666666665554 2224445555555666666666665555555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5e-12 Score=106.69 Aligned_cols=294 Identities=17% Similarity=0.155 Sum_probs=187.8
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
-.|+|..|+++..+..+.+.. ....|..-..+-...|+.+.+-.++.+..+..-.++........+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 356777777777666555443 2334445555566667777777777766654223444455556666666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH-------HhHHHHHHHHHHcCCHhHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS-------YTYGTLINGLCRLGKIYEAKELF 214 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~ 214 (485)
-+.++.+.+ +-+..........|.+. |++.....++..+.+.|.-.++ .+|..+++-....+..+.-...+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 666666654 22344555556666665 7777777777777666543332 35666666665555555555566
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC
Q 011463 215 KEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP 294 (485)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (485)
+..... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|.. . ..-.+.+-++.+.-.+..+....... .
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h~-~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQHP-E 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhCC-C
Confidence 665443 3345555666677777778888888887777776555441 1 12234566777777777776666532 3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 5677778888888888888888888876665 578888888888888888888888888777654444443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-11 Score=106.17 Aligned_cols=397 Identities=12% Similarity=0.021 Sum_probs=260.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT-PKSYITVLAILV 131 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 131 (485)
+.....-|.+.|++++|++.|...++..++ .+..|.....+|...|+|+++.+--.+.++.+ |+ +.++..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~-epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPD-EPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCC-CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 455567788999999999999999987543 26678888889999999999999888888854 44 567777778888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-CC--CCCCHHhHHHHHHHHH------
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RG--CTPDSYTYGTLINGLC------ 202 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~------ 202 (485)
..|++.+|+.-..-..-.+---+. ....++....+. .+.+..++-.+ .+ +-|+.....+....+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~-s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNA-SIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccc-hhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 888888876654433322111111 111222221111 12222222222 11 2233333322222211
Q ss_pred -------------------HcC---CHhHHHHHHHHHHHC-CCCC--C---------hhhHHHHHHHHHccCCHHHHHHH
Q 011463 203 -------------------RLG---KIYEAKELFKEMETK-ACSP--T---------VVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 203 -------------------~~~---~~~~a~~~~~~~~~~-~~~~--~---------~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
..+ .+..|...+.+-... ...+ + ..+......-+.-.|+.-.|..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 001 122222222221110 0011 1 11111112223446888999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
|+..++....+ ...|--+...|....+.++.+..|..+.+.++. ++.+|..-.+.+.-.+++++|..=|++.+... +
T Consensus 349 ~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-p 425 (606)
T KOG0547|consen 349 FDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-P 425 (606)
T ss_pred HHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-h
Confidence 99999875433 333777777899999999999999999998655 78888888888888899999999999998864 3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc--
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV-- 405 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~-- 405 (485)
-+...|..+.-+..+.++++++...|++..++- |+. ..+|+.....+... +++.|.+.|+...+..+.-
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 355667777777778899999999999998753 332 23444778888888 9999999999998764431
Q ss_pred ---ch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 ---DS--LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ---~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+. .+--.++..- -.+++..|+.+++++++.+ +-....+..+...-.+.|+.++|+++|++....
T Consensus 498 ~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 1112222222 2489999999999999874 335567888999999999999999999988653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-12 Score=104.20 Aligned_cols=289 Identities=15% Similarity=0.126 Sum_probs=221.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC------HhhHHHHHHHHHHcC
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT------PKSYITVLAILVEEN 134 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 134 (485)
.-+.+.++|.++|-+|.+.++. +.++..+|.+.|.+.|..+.|+.+...+.+. || ..+...+..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 4577899999999999987655 6778888999999999999999999998874 33 223455667788899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHhHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIYEA 210 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 210 (485)
-++.|+.+|..+.+.+. --......++..|-.. .+|++|+++-+++.+.+..+. ...|..|...+....+.+.|
T Consensus 122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999987552 3345667777777776 999999999999888765543 23566677777788899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.+...-..+...|..+|.+.|+.++....+..+.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999998876432 444555667888999999999999999999876666778888999999999999999999999887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHHC
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD---IGKYQEAANFLDEMVLG 360 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 360 (485)
... ...-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+....+++|...
T Consensus 279 ~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 NTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 443 333444444445555566777666666555 6899999999886543 44566777777777643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-12 Score=105.12 Aligned_cols=289 Identities=17% Similarity=0.195 Sum_probs=207.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC-CCCC--HHhHHHHHHHHHHcCCHhH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG-CTPD--SYTYGTLINGLCRLGKIYE 209 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~ 209 (485)
.++.++|.++|-+|.+. .|...-.+..+..+.+..|..|.|+++.+.+.++. .+.+ ......|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 56678888888888773 35555555556666666688888888888877752 1111 2234456677888888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 210 AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN----VFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 210 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
|+.+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+. ...|..+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999998887643 22455677888889889999999999888887654333 2345666667777888999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
++.+.+.+ .+..--.+.+.....|+++.|.+.++...+.+...-+.+...|..+|...|+.++....+.++.+....++
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99887544 55556677788899999999999999999886555567888899999999999999999999987543333
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---KGDIHKSARIVDELVLD 436 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 436 (485)
.. . .+....... ..+.|...+.+-... +|+...+..++..-.. .|...+.+..++.|+..
T Consensus 284 ~~--l-------~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AE--L-------MLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HH--H-------HHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 22 1 333333333 677777777766665 5688888888876643 35567777777777754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-12 Score=106.44 Aligned_cols=286 Identities=13% Similarity=0.104 Sum_probs=199.9
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++..|++...+..+.+.. ....|..-..+-...|+.+.+-.++.+.-+....++....-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 7777777777776665433 233444445556666777777777777666533444555555666666777777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI-------VTYSTLLNGLCKEGKLQEAVEILDRM 322 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 322 (485)
+++.+.+ +-++........+|.+.|++.....++..+.+.+.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7776664 335566667777777777777777777777776654443 24555555555555555555666665
Q ss_pred hHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011463 323 KLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRS 402 (485)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~ 402 (485)
... .+.++..-..++.-+.++|+.++|.++.++..+.+-.|+ .. .++....-.+++.-.+..++..+..
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-------~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-------RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-------HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 543 345677777888888899999999999988888765554 11 2222222226666677777766655
Q ss_pred CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 403 ISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|++.+|.+..++.+-.
T Consensus 325 ~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 44 6688999999999999999999999988875 899999999999999999999999999998854
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-11 Score=104.74 Aligned_cols=362 Identities=10% Similarity=0.044 Sum_probs=248.7
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLI 162 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll 162 (485)
|...+-.....+.+.|....|+..|...... .|-.-.+|..|...+. + ++........+ +. +......++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHHHHHH
Confidence 3333334444566677778888888777654 2334445554444332 1 22222222222 11 122222222
Q ss_pred -HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHcc
Q 011463 163 -KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQS 239 (485)
Q Consensus 163 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~ 239 (485)
.++-.. ...+++..-.+.....|++-+...-+....+.....|+++|+.+|+++.+... -.|..+|..++-.- .
T Consensus 234 ~~a~~el-~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 234 KKAYQEL-HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 233333 56778888888888888877777777777778888999999999999988721 12456666655332 2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
.+..- .-+-...... -+..+.|...+.+.|+-.++.++|..+|++.++.++. ....|+.+..-|...++...|..-+
T Consensus 311 ~~skL-s~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKL-SYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHH-HHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22111 1111111111 1334567788888999999999999999999998654 5678888999999999999999999
Q ss_pred HHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHHHhcC-ChhHHHHHHHH
Q 011463 320 DRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLS 397 (485)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~ 397 (485)
++.++.+ |.|...|-.+.++|.-.+...-|+-.|++..+ +.|++ ..|. ++...|.+. ++++|.+.|..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~-------aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV-------ALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH-------HHHHHHHHhccHHHHHHHHHH
Confidence 9999886 67899999999999999999999999999987 45553 3444 888888887 99999999999
Q ss_pred HHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 398 MRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD--EGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
....+-. +...+..|...|-+.++..+|...|++.++. |...+ .....-|..-+.+.+++++|..+...+..-
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9887644 6688999999999999999999999988763 32222 122222445566889999998877766653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=121.71 Aligned_cols=288 Identities=15% Similarity=0.106 Sum_probs=223.2
Q ss_pred CCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 64 NQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
=+..+|...|+........ +..+...+..+|...+++++|..+|+.+.+... --+...|.+.+-.+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567899999996655444 557788899999999999999999999987531 1245666666644322 22223
Q ss_pred HHH-HHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 142 FYR-HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 142 ~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
.+. .+.+. -+-.+.+|..+...+.-+ ++.+.|++.|++....+.. ...+|+.+..-+.....++.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 332 23332 245678899999888887 9999999999999987433 6788999999999999999999999998764
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH
Q 011463 221 ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300 (485)
Q Consensus 221 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (485)
... +..+|.-+...|.+.++++.|+-.|+.+.+.+ +.+......+...+.+.|+.++|+++++++...... |+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 211 33455566788999999999999999999876 446777788888899999999999999999988655 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (485)
..+..+...+++++|...++++++. ++-+..++..+...|.+.|+.+.|+.-|.-+.....+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 5566777889999999999999886 3556778888999999999999999999988875433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.8e-11 Score=103.30 Aligned_cols=435 Identities=11% Similarity=0.023 Sum_probs=291.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.+..-+..+.++..|+-+-++.. +...|+.....+++++.-.|++++|..++..-.-. ..+..........+.
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~-----~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVA-----GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH-----hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34444556677777777777776 44466666667788888888888888887765333 236677777778888
Q ss_pred ccCChhhHHHHHHHH----Hhc---------CCCCCHhh-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011463 97 RVHRPLDAMRVFDKM----KEF---------GCEPTPKS-----------YITVLAILVEENQLKLAFRFYRHMREIGIQ 152 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~----~~~---------~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (485)
+..+++.|..++... ... -+.++..- +-.-...|....+.++|...|.+.....
T Consensus 94 ~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D-- 171 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLAD-- 171 (611)
T ss_pred HHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcc--
Confidence 888888888888722 100 00111111 1111233445566777777777765432
Q ss_pred CCHHHHHHH---HHHHHhc----------------CC-ChHHHHHHHHhhhh----------------CCCCCCHHhHHH
Q 011463 153 PCVASLNVL---IKALCKN----------------SG-TMDAAFKIFREMPN----------------RGCTPDSYTYGT 196 (485)
Q Consensus 153 ~~~~~~~~l---l~~~~~~----------------~~-~~~~a~~~~~~~~~----------------~~~~~~~~~~~~ 196 (485)
...+..+ +....-. .+ +.+....+|+.... .+..-+......
T Consensus 172 --~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 172 --AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred --hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 2222111 1111000 01 11112222221100 012223444455
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (485)
...-+...+++.+..++.+...+. .++....+..-|.++.+.|+..+-..+-.++.+. .+-.+.+|-++.-.|.-.|.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 566677889999999999998876 3556667777778999999998888888888877 35577889999988989999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
..+|.+.|.+....+.. =...|-.+...|...|..+.|...+....+. ++-...-+--+..-|.+.++.+.|.++|.+
T Consensus 328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998775332 3457888888999999999999988877654 111222233455568889999999999999
Q ss_pred HHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--CCc----cchhhHHHHHHHHHhcCCHHHHHHH
Q 011463 357 MVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--SIS----VDSLTYSSLITCFCKKGDIHKSARI 429 (485)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~~ 429 (485)
... +.|+..... +-+.-..... .+.+|..+|+..+.. ... --..+++.|+.+|.+.+.+++|+..
T Consensus 406 A~a--i~P~Dplv~------~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 406 ALA--IAPSDPLVL------HELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHh--cCCCcchhh------hhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 876 556654322 1222222223 788999999887731 111 1234588899999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 430 VDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 430 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+++.+.. .+.+..++.+++-.|...|+++.|++.|.+++-.....
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999987 36688889999999999999999999999999866544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-11 Score=100.05 Aligned_cols=418 Identities=11% Similarity=0.098 Sum_probs=223.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+.-+....|+..|+.+++... ..+-.....+-.-+...+.+.|++++|...+..+.... .++...+..+...+.-.
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 345666778888888887665 22222122233334566678888888888887776643 44666676676666667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|.+.+|..+-.+..+ ++-....+.....+.++-++...+.+.+... ...-.++....... -.+.+|+++
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR-~HYQeAIdv 173 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMR-MHYQEAIDV 173 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHH-HHHHHHHHH
Confidence 777777776655432 3334444445555556655555544444321 11111222222222 356667777
Q ss_pred HHhhhhCCCCCCHHhHHH-HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--C---------------
Q 011463 179 FREMPNRGCTPDSYTYGT-LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--K--------------- 240 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~--------------- 240 (485)
+.+....+ |+-...|. +.-+|.+..-++-+.++++-.... ++.+....|....-..+. |
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 76666542 22222222 333455566666666666555443 222222222222211111 1
Q ss_pred ------------------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 011463 241 ------------------SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTL 302 (485)
Q Consensus 241 ------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 302 (485)
+-+.|++++-.+.+. -| ..--.++-.|.+.++..+|..+.+.+... ++.-|-.-
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilK 322 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILK 322 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHH
Confidence 122233333222221 11 12234455677888888888877765221 22222221
Q ss_pred HHHHHhcCC-------HHHHHHHHHHHhHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhh
Q 011463 303 LNGLCKEGK-------LQEAVEILDRMKLQGLKPD-AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIR 374 (485)
Q Consensus 303 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 374 (485)
...+...|+ ..-|...|+..-+.+..-| ..-...+..++.-..++++++.++..+...-...|...+
T Consensus 323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~----- 397 (557)
T KOG3785|consen 323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL----- 397 (557)
T ss_pred HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-----
Confidence 222223332 3445555554444433222 223345555666667788888888887765444444444
Q ss_pred hHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHH
Q 011463 375 IHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTY-SSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS-AVMTA 451 (485)
Q Consensus 375 ~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~ 451 (485)
.+..+.+.. ++.+|.++|-.+....++ |..+| ..|.++|.+++.++-|..++-++. .+.+..... .+...
T Consensus 398 ---N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 398 ---NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIAND 470 (557)
T ss_pred ---HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHH
Confidence 455555555 888888888888776666 44555 445678888888888877665543 233333333 34556
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCC
Q 011463 452 LWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
|.+.+.+--|.+.|...-..++.
T Consensus 471 CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888766555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-10 Score=104.39 Aligned_cols=433 Identities=12% Similarity=0.078 Sum_probs=268.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
-..++...|++++|++.++... ..+......+...+..+.+.|+.++|..++..++..+|. +..-|..+..+..-
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~----~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE----KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh----hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhh
Confidence 3567889999999999998866 455556777888899999999999999999999999865 66666666666532
Q ss_pred c-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 98 V-----HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 98 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
. .+.+....+|+++.+.- |...+...+.-.+.....+ ..+..++..+...|+++ ++..+-..|... ..
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~-~K 158 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP-EK 158 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh-hH
Confidence 2 35677788999887753 4444433332222222223 35566777778888744 334444333333 44
Q ss_pred hHHHHHHHHhhhhC----C----------CCCCH--HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 172 MDAAFKIFREMPNR----G----------CTPDS--YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 172 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
.+...+++...... + -+|+. .++..+...|...|++++|++.+++.++.. +..+..|..-.+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 45555555554322 1 12333 355667888889999999999999998873 2246778888899
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVT--------YSTLLNGLC 307 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~ 307 (485)
+-+.|++.+|.+.++..+..+ ..|...-+-....+.+.|+.++|.+++......+..|-... ......+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886 34777777788899999999999999999988764332221 234567888
Q ss_pred hcCCHHHHHHHHHHHhHC-------CC--------CCCHHhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCC
Q 011463 308 KEGKLQEAVEILDRMKLQ-------GL--------KPDAGLYGKIISCFCDIGK-------YQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~-------~~--------~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 365 (485)
+.|++..|++.|..+.+. .+ +.+..+|..+++..-+... ...|.+++-++........
T Consensus 317 r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~ 396 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQ 396 (517)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999988877665432 00 1233344444443222211 2335555555544321100
Q ss_pred ccc----ccchhhh-HHHHHHHHhc----CChhHHHHHHHHHH------------hCCCccchhhHHHHHHHHHhcC-CH
Q 011463 366 RLT----WSLHIRI-HNTVVQGLCK----TDPNRAFQVYLSMR------------NRSISVDSLTYSSLITCFCKKG-DI 423 (485)
Q Consensus 366 ~~~----~~~~~~~-~~~l~~~~~~----~~~~~a~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g-~~ 423 (485)
... ....... -..+..-..+ ..-+++...-.+-. ....+.|. ..+..-+.+.. -.
T Consensus 397 ~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~---Dp~GekL~~t~dPL 473 (517)
T PF12569_consen 397 GEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDD---DPLGEKLLKTEDPL 473 (517)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCC---CccHHHHhcCCcHH
Confidence 000 0000000 0000000000 01111111100000 00001111 12233344544 46
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
++|.++++-+.+.+ +.+..+|.....+|.+.|++--|.+.+.+
T Consensus 474 e~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 474 EEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 88999999999873 55778999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-10 Score=95.67 Aligned_cols=385 Identities=10% Similarity=0.054 Sum_probs=237.4
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
+.-+...+++..|+.+++.-...+-.-...+-.-+..++...|++++|+..+..+.+.. .++...+..+..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55567789999999999877654432111222234456778999999999999988754 57778888888888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (485)
.+|..+-.+. |+......++-.++...++-++...+.+.+.. ....-.+|.......-.+.+|+++|+.
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999887654 33344444444444333777777666666554 234445666777777789999999999
Q ss_pred HHHCCCCCChhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHH--------
Q 011463 217 METKACSPTVVTYTSL-INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM-------- 287 (485)
Q Consensus 217 ~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------- 287 (485)
.... .|.....|.. .-+|.+..-++-+.+++.--.+. ++.++...|..+....+.=.-..|..-...+
T Consensus 177 vL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 9875 3455555543 45667777788888888777665 2334445554444333321111122111111
Q ss_pred ------HhCC------------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhc
Q 011463 288 ------ISKR------------HRP-----NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI 344 (485)
Q Consensus 288 ------~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (485)
.+++ +-| -+..--.|+--|.+.+++.+|..+.+++. |.++.-|..-.-.++..
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aal 329 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAAL 329 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHh
Confidence 1111 001 12222344556788999999999887765 33333333323334444
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHH
Q 011463 345 GK-------YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITC 416 (485)
Q Consensus 345 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (485)
|+ ..-|.+.|+-.-+.+..-|...-. ..+...+.-. .+++.+..+..+..--...|...+ .+..+
T Consensus 330 GQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR------QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFFQLVGESALECDTIPGR------QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred hhhcCcHHHHHHHHHHHHHhcccccccccccch------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 43 445666666554444443332222 1333333334 778888888777764333344444 46889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCcHHHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLPDEGTWS-AVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
++..|++.+|.++|-+.....++ +..+|. .+.++|.+.++++-|.+++-++
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 99999999999999888755444 444554 5677788999999997766543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-09 Score=91.44 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=215.1
Q ss_pred CChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
++...+...+-.+... -++.+......+.+++...|+..+|+..|++.+..+. -+..........+.+.|+.+....+
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHH
Confidence 4444444444333333 2556888899999999999999999999999876421 1223333344456678899988888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
...+.... .-+...|-.-+.......+++.|+.+-++.++.+.. +...+-.-...+...|++++|.-.|+..+... |
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 88877642 223344444455556778899999999998887443 45555555667888999999999999988763 4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHH-HHHhcC--ChhHHHHHHHHHHhCCCcc
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV-QGLCKT--DPNRAFQVYLSMRNRSISV 405 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--~~~~a~~~~~~~~~~~~~~ 405 (485)
-+..+|..++.+|...|.+.+|...-+...+.- ..+..++. .+. ..+... .-++|.+++++.....+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~Lt-------L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLT-------LFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhh-------hhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 578899999999999999999998887776531 22333332 221 122222 568899999999887654
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
-....+.+...|...|..++++.++++.... .||....+.+...+...+.+++|.+.|..++..++.+
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 3456677888999999999999999999875 7999999999999999999999999999999877544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-10 Score=99.12 Aligned_cols=432 Identities=14% Similarity=0.113 Sum_probs=286.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+.-+...+++...++..+.++ .+.+...++....+-.+...|+-++|.+..+.....++. +...|+.+.-.+...
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL----~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQIL----KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHH----HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 334566889999999999999 355666777777778888999999999999999998776 788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV-ASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.++++|++.|......+ +.|...+.-+.-.-++.++++.....-.++.+.. |.. ..|..+.-+..-. |++..|..
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~-g~y~~A~~ 164 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLL-GEYKMALE 164 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999876 5577888877777788899888888877777643 433 3444444444455 99999999
Q ss_pred HHHhhhhCC-CCCCHHhHHHHH------HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 178 IFREMPNRG-CTPDSYTYGTLI------NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
+++...+.. -.|+...+.... ....+.|..+.|.+.+...... +......-..-...+.+.++.++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 999988764 245665554433 3356778888888887776543 11122223344567888999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHH-HHHcCCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC
Q 011463 251 EMRSKGVEPNVFTYSSLMD-GLCKGGCSSQAM-ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK 328 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (485)
.+... .||...|...+. ++.+-.+.-++. .+|....+. .+.....-..-+.......-.+....++..+.+.|++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 99987 466666655544 443344444444 666666554 2111111111122222222234455667777788865
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCcccccchhhhHHHHHHHHhcC-ChhHHHH
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVLG----G----------ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~ 393 (485)
+ ++..+...|-.-...+-..++.-.+... | -+|....|. +-.+...+-.. +++.|..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt-----~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT-----LYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH-----HHHHHHHHHHcccHHHHHH
Confidence 4 4444444443322222111222222111 1 123333332 11344444555 8999999
Q ss_pred HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
+++...++-+. -+..|..=.+.+...|++++|..++++..+.+ .||...-...+.-..++++.++|.+++.+-.+.|.
T Consensus 393 yId~AIdHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 393 YIDLAIDHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99999987332 23445555688889999999999999999874 45554444677777899999999999888777763
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-12 Score=119.20 Aligned_cols=268 Identities=12% Similarity=0.079 Sum_probs=181.8
Q ss_pred CCCHHhHHHHHHHHH-----hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh---------ccCChhhHHHHHHHHH
Q 011463 47 RHDNSTFSLMISKLV-----SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG---------RVHRPLDAMRVFDKMK 112 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 112 (485)
+.+...|...+++.. ..+++++|.+.|+++.+..|. +...+..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 445555555554431 234688999999999988765 5666666665543 2345789999999998
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCH
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDS 191 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 191 (485)
+.+ |.+..++..+...+...|++++|...|++..+.+ |+ ...+..+...+... |++++|...++++.+.++. +.
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~-G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMA-GQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-Ch
Confidence 875 4567788888888889999999999999998865 54 44555555666666 9999999999999887543 33
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (485)
..+..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++.... +.+....+.+...|
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEY 485 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHH
Confidence 33444555567788999999999988765323345556777788889999999999998876552 22344455566666
Q ss_pred HcCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 272 CKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
...| +++...++.+.+... .+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 477777777655411 1122222 33445556676666655 7777653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-11 Score=114.33 Aligned_cols=265 Identities=12% Similarity=0.070 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHhc-----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH---------cCCHHHHHHHHHHHHHc
Q 011463 84 TEDIFLSICRGYGR-----VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE---------ENQLKLAFRFYRHMREI 149 (485)
Q Consensus 84 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~ 149 (485)
+...|...+.+-.. .++.++|+..|++..+.. |.+...|..+..++.. .+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 55555555544221 245679999999999864 3346667666655542 24588999999999986
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh
Q 011463 150 GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT 228 (485)
Q Consensus 150 ~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (485)
. |+ ...+..+...+... |++++|...++++.+.++. +...+..+..++...|++++|...+++..+.... +...
T Consensus 334 d--P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 334 D--HNNPQALGLLGLINTIH-SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred C--CCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 5 54 44455555555565 9999999999999988533 6778888999999999999999999999886432 2223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
+..++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...+.++.... +.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 344455567789999999999998876423345557778888899999999999999876652 2234445556666677
Q ss_pred cCCHHHHHHHHHHHhHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 309 EGKLQEAVEILDRMKLQG-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.| +.|...++.+.+.. ..+....+ .-..+.-.|+.+.+..+ +++.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77 47777777765531 11222222 34445567777777666 777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-10 Score=100.26 Aligned_cols=291 Identities=14% Similarity=0.073 Sum_probs=229.2
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTS 231 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (485)
.-+......-...+... +++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~-c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYG-CRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHc-ChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34555666666777777 99999999999999874 345556666677899999988888888888776 3457889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011463 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 232 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (485)
+.--|...|+..+|.+.|.+....+.. =...|-.+...+.-.|..++|+..+..+.+. ++-....+--+.--|.+.++
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 999999999999999999998765422 2456888889999999999999999888775 22122223334556888999
Q ss_pred HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG--GITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
.+.|.+.|.+..... |.|+.+++.+.-.....+.+.+|..+|+..+.. .+.+....|. ...+.+...+.+. .+
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~---p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE---PTLNNLGHAYRKLNKY 471 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh---HHHHhHHHHHHHHhhH
Confidence 999999999988764 668888998888888899999999999988732 1223332343 4455788888888 99
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
++|+..+++.+...++ +..++.++.-.|...|+++.|++.|.+.... .|+..+...++..+..
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999999999988777 8999999999999999999999999999864 8888777777665443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-09 Score=95.15 Aligned_cols=420 Identities=14% Similarity=0.086 Sum_probs=242.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
=++.+..+|++++|.+...+++ ...|.+...+..-+.++++.++|++|+.+.+.-.... .+..-+..-..+..+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil----~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKIL----SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHH----hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHH
Confidence 3566778999999999999999 4557788889999999999999999996665433211 111111233444558
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.++.++|+..++-.. +.+..+...-.+.+.+.+++++|..+|+.+.+.+.+.... ..-...... +..-.+.
T Consensus 92 lnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~--~~r~nl~a~--~a~l~~~- 162 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE--ERRANLLAV--AAALQVQ- 162 (652)
T ss_pred cccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH--HHHHHHHHH--HHhhhHH-
Confidence 899999999998332 2345577778888999999999999999998876422111 111111111 1111121
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-------CCCCh-------hhHHHHHHHHHccCCHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-------CSPTV-------VTYTSLINGLCQSKSVE 243 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~ll~~~~~~~~~~ 243 (485)
+.+..... ...+-..+......+...|++.+|+++++.....+ -..+. ..-..+.-.+-..|+-+
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 22222221 11122223334445667788888888887762210 00000 01123344556678888
Q ss_pred HHHHHHHHHHhCCCCCCHhhH----HHHHHHHHcC---------------------------------------------
Q 011463 244 EAMRLFEEMRSKGVEPNVFTY----SSLMDGLCKG--------------------------------------------- 274 (485)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~--------------------------------------------- 274 (485)
+|..++...++.+ .+|.... |.++..-...
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888877764 2333221 1111110000
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC--KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
+..+.+.++..... +..| ...+..++..+. +...+..+..++...-+....-...+.-.+++.....|+++.|++
T Consensus 321 nk~~q~r~~~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 00111111111100 1112 233344444332 222467777777777665322234456667777889999999999
Q ss_pred HHH--------HHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC--CCccchh----hHHHHHHHH
Q 011463 353 FLD--------EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR--SISVDSL----TYSSLITCF 417 (485)
Q Consensus 353 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~ 417 (485)
++. ...+.+..|..+. ++...+.+. +.+.|-.++.+..+. .-.+... ++..+...-
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~---------aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~ 468 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVG---------AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK 468 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHH---------HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence 999 5555455555433 444555554 555566666555431 0011222 333333444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
.+.|+.++|...++++.+.+ ++|..+...++.+|++.. ++.|..+-.+.
T Consensus 469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 57799999999999999863 778888888999988764 67776655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-09 Score=93.38 Aligned_cols=427 Identities=10% Similarity=0.110 Sum_probs=253.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCC--CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRH--DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
++.+..+|++...+..|+.++. ..|. ....|...+......|-++.+..++++.++. ++..-...+..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALr----aLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALR----ALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHH----hCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 4567778888888888888882 3233 2446777888888888888888888888875 4445677777888
Q ss_pred ccCChhhHHHHHHHHHhcC------CCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCCCH--HHHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFG------CEPTPKSYITVLAILVEENQLKL---AFRFYRHMREIGIQPCV--ASLNVLIKAL 165 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~ll~~~ 165 (485)
+.+++++|.+.+....... -+.+...|..+-...++..+.-. ...+++.+... -+|. ..|.++...|
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYY 258 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHH
Confidence 8888888888888775431 13445556666555555443322 23333333332 1332 4677888888
Q ss_pred HhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc----------------CC------HhHHHHHHHHHHHCC--
Q 011463 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL----------------GK------IYEAKELFKEMETKA-- 221 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~~-- 221 (485)
.+. |.+++|..+|++.... ..+..-|+.+.++|+.- ++ ++-....|+.+....
T Consensus 259 Ir~-g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 259 IRS-GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHh-hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 887 9999999998887765 22344444444444321 11 222233333333221
Q ss_pred ---------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC------CHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 222 ---------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP------NVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 222 ---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
-+.+...|..-.. ...|+..+-...+.++.+. +.| -...|..+.+.|-..|+.+.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1122333333222 2346677777777777654 222 134577788888899999999999998
Q ss_pred HHhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC-----------------CCHHhHHHHHHHHHhcCC
Q 011463 287 MISKRHRPN---IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK-----------------PDAGLYGKIISCFCDIGK 346 (485)
Q Consensus 287 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 346 (485)
..+-..+.- ..+|......=.+..+++.|.+++++.....-+ .+...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 877643321 344555555556778888888888876543111 122345555555556677
Q ss_pred HHHHHHHHHHHHHCCCC-CCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch-hhHHHHHHHHHh-cC-
Q 011463 347 YQEAANFLDEMVLGGIT-PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS-LTYSSLITCFCK-KG- 421 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~g- 421 (485)
++....+++++....+. |.... .....+-.+ -+++++++|++-...-..|+. ..|+..+.-+.+ -|
T Consensus 493 festk~vYdriidLriaTPqii~---------NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIII---------NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHH---------HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 88888888888765432 21100 111111222 567777777776655333433 456666555443 22
Q ss_pred -CHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCcHHHHHHHHHHHHHc
Q 011463 422 -DIHKSARIVDELVLDGCLPDEGTWSAVMTA--LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 422 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 471 (485)
..+.|..+|+++++ |++|...-..-++-+ =-+.|....|+.+++++...
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 56778888888887 566654332222222 12457777777777776554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=105.17 Aligned_cols=299 Identities=14% Similarity=0.106 Sum_probs=215.9
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
........+...|++++|++.++.-...-++ ...........+.+.|+.++|..+|..+++.+ |.+..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~D-k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILD-KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3344456788999999999999887665433 55677788899999999999999999999986 334444555555542
Q ss_pred H-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 132 E-----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 132 ~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
- ..+.+...++|+.+...- |.......+.-.+... ..+ ..+..++..+...|++ .+|+.|-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g-~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEG-DEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCH-HHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 2 235778888999887754 5544444333333222 233 3455667777778865 35666666666555
Q ss_pred CHhHHHHHHHHHHHC----C----------CCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 206 KIYEAKELFKEMETK----A----------CSPTV--VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
...-..+++...... + -+|+. .++..+...|...|++++|+..++..++.. +..+..|..-.+
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 555555565555432 1 12333 344666788889999999999999999873 334778888899
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH--------hHHHHHHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG--------LYGKIISCF 341 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 341 (485)
.+-+.|++.+|.+.++.+...... |...-+..+..+.+.|+.++|.+++....+.+..|... .......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998655 88888888999999999999999999988776433222 224567789
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 011463 342 CDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 342 ~~~~~~~~a~~~~~~~~~~ 360 (485)
.+.|++..|++.|..+.+.
T Consensus 316 ~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999988887664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8e-09 Score=93.05 Aligned_cols=425 Identities=12% Similarity=0.103 Sum_probs=274.4
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+...|+-++|....+..+ .+-..+...|..++-.+....++++|+..|..+...+++ |..++..+.-.-++.|+
T Consensus 50 ~L~~lg~~~ea~~~vr~gl----r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGL----RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRD 124 (700)
T ss_pred hhhcccchHHHHHHHHHHh----ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHh
Confidence 4566899999999999888 455667889999999999999999999999999998876 88899999888889999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH------HhcCCChH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASLNVLIKAL------CKNSGTMD 173 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~------~~~~~~~~ 173 (485)
++.......++.+.. +.....|..+..++.-.|+...|..+++...+.. -.|+...+......+ ... |..+
T Consensus 125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~-g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA-GSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc-ccHH
Confidence 999998888888753 3456678888889999999999999999988764 246665554433332 344 7788
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH-HHHHccCCHHHHH-HHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI-NGLCQSKSVEEAM-RLFEE 251 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~-~~~~~ 251 (485)
.|.+.+...... +.-....-..-...+.+.+++++|..++..+... .||...|...+ .++.+-.+.-++. .+|..
T Consensus 203 ~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 203 KALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888877665543 1112222334556788999999999999999886 45665555544 4444333333444 66666
Q ss_pred HHhCCCCCCHhhH-HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh----HCC
Q 011463 252 MRSKGVEPNVFTY-SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK----LQG 326 (485)
Q Consensus 252 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~ 326 (485)
..+. .|....- ..=+.......-.+..-.++....+.|+++ ++..+...|-.....+-..++.-.+. ..|
T Consensus 280 ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~ 354 (700)
T KOG1156|consen 280 LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG 354 (700)
T ss_pred Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence 6544 1211111 111112222223344556666777776654 34444444432222211111111111 111
Q ss_pred ----------CCCCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHH
Q 011463 327 ----------LKPDAGL--YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ 393 (485)
Q Consensus 327 ----------~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~ 393 (485)
-+|.... +-.++..+-..|+++.|..+++..... .|+..-. |-.=...+... +++.|..
T Consensus 355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEl------y~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIEL------YLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHH------HHHHHHHHHhcCChHHHHH
Confidence 1444443 445677888999999999999988753 4543322 11222333334 8899999
Q ss_pred HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C----ChhhHHH--HHHHHHhcCcHHHHHHHH
Q 011463 394 VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCL--P----DEGTWSA--VMTALWDRRKMRQAAELL 465 (485)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p----~~~~~~~--l~~~~~~~g~~~~A~~~~ 465 (485)
++++..+.... |...-.--..-..++++.++|.++.....+.|.. . -.-.|-. -+.+|.+.|++..|.+-+
T Consensus 427 ~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 427 WLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 99988876533 5444445566667889999999998888877631 0 0112222 245778888888887666
Q ss_pred HHHH
Q 011463 466 LLEL 469 (485)
Q Consensus 466 ~~~~ 469 (485)
..+-
T Consensus 506 h~i~ 509 (700)
T KOG1156|consen 506 HEIE 509 (700)
T ss_pred hhHH
Confidence 5543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-11 Score=101.42 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=105.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..+...+...|++++|.+.++++....+. +...+..+...+...|++++|.+.+++..+.+ +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 445566666666666666666666666655433 45555666666666666666666666666543 3344555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
+...|++++|.+.+++.......+ ....+..+...+... |++++|...+++..+.... +...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 666666666666666665432111 122233333333444 5555555555555544211 3344455555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+|...+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555443 22233334444444555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-11 Score=100.68 Aligned_cols=199 Identities=14% Similarity=0.051 Sum_probs=164.4
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+...|++++|++.++++.. ..|.+...+..+...+...|++++|.+.+++.....+. +...+..+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 345667888999999999999999982 33566788899999999999999999999999988765 6678888999
Q ss_pred HHhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+...|++++|.+.+++..+... +.....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+... |++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLR-GQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHc-CCH
Confidence 99999999999999999987421 2345567778888999999999999999998864 23455666777777777 999
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998877 3446777778888899999999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-09 Score=97.38 Aligned_cols=414 Identities=12% Similarity=0.050 Sum_probs=246.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCCHhhH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSY 123 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 123 (485)
.+..++..|..+.-++...|+++.+.+.|++....-.. ..+.|..+...|...|.-..|..+++.-....- +++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34557777777777788888888888888877665443 566777777778888887778877776654321 2234444
Q ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHh---cC-------CChHHHHHHHHhhhhCCCC
Q 011463 124 ITVLAILVE-ENQLKLAFRFYRHMREI--GI--QPCVASLNVLIKALCK---NS-------GTMDAAFKIFREMPNRGCT 188 (485)
Q Consensus 124 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~---~~-------~~~~~a~~~~~~~~~~~~~ 188 (485)
...-..|.+ .+..++++.+-.++... +. ......+..+.-+|.. .. ....++++.+++..+.+..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444543 46666777666666552 11 0111222222222211 10 1124566667777666433
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM 268 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 268 (485)
|+.....+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- .-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 3333334444567777888888888888777555677778877777888888888888877766541 11111111111
Q ss_pred HHHHcCCChHHHHHHHHHHHhC---------------------C-------CCCChhhHHHHHHHHHhcC---CHHHHHH
Q 011463 269 DGLCKGGCSSQAMELLQMMISK---------------------R-------HRPNIVTYSTLLNGLCKEG---KLQEAVE 317 (485)
Q Consensus 269 ~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~a~~ 317 (485)
..-...++.++++.....++.. | ..-...++..+..-....+ ..+..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-- 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-- 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence 1122244444444443333221 0 0001111111111111000 00000
Q ss_pred HHHHHhHCCCCC--C------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 318 ILDRMKLQGLKP--D------AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 318 ~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
+....+.| + ...|......+.+.+..++|...+.+..... |-.. .+|......+... ..
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~------~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSA------SVYYLRGLLLEVKGQL 700 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhH------HHHHHhhHHHHHHHhh
Confidence 11111112 1 1245556677888899999988888876532 2211 1222332333333 88
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSAR--IVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
++|.+.|......++. ++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|.
T Consensus 701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999888766 77889999999999998888877 999999875 5577889999999999999999999999
Q ss_pred HHHHcCCCccc
Q 011463 467 LELMNKCVEAE 477 (485)
Q Consensus 467 ~~~~~~~~~~~ 477 (485)
.+++...-.|-
T Consensus 779 aa~qLe~S~PV 789 (799)
T KOG4162|consen 779 AALQLEESNPV 789 (799)
T ss_pred HHHhhccCCCc
Confidence 99997654443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-10 Score=105.78 Aligned_cols=239 Identities=14% Similarity=0.221 Sum_probs=128.5
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
|.+++|+.++.-|+..|+.+.|- +|..|. ....+.+...++.++......++.+.+. .|..++|.
T Consensus 23 PnRvtyqsLiarYc~~gdieaat-if~fm~---~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 23 PNRVTYQSLIARYCTKGDIEAAT-IFPFME---IKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CchhhHHHHHHHHcccCCCcccc-chhhhh---cccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 34566666666666666666665 666665 4455555666666666666666655544 35566677
Q ss_pred HHHHHHhccCChhh---HHHHHHHHH----hcCCCCCHhhH--------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLD---AMRVFDKMK----EFGCEPTPKSY--------------ITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 90 ~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|..+|...||... ..+.+..+. ..|+.....-+ ...+....-.|-++.+++++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 77777777766543 222111111 11211000000 1112222223333333333332221
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChh
Q 011463 149 IG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVV 227 (485)
Q Consensus 149 ~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 227 (485)
.. ..|. ..++.........+++-..+.+...+ .|++.++..++.+-...|+.+.|..++.+|.+.|++.+..
T Consensus 168 sa~~~p~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 168 SAWNAPF----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred ccccchH----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 10 0011 11133222221223333333333222 4677788888888888888888888888888888777776
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
-|-.++-+ .++...+..++.-|.+.|+.|+..|+.-.+..+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66666554 67777777778888888888887777665555554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-12 Score=102.19 Aligned_cols=230 Identities=15% Similarity=0.087 Sum_probs=164.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
..+.++|.+.|-+.+|.+-++..++. .|.+++|..|..+|.+..+++.|+.++.+-.+. +|-++....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667788888888888888877776 346677777788888888888888888877764 233333345566777778
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
++.+.|.++|+...+.. +.++.....+...+.-. ++++.|+.++++++..|.. ++..|+.+.-+|.-.++++-++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~-~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYD-NNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccC-CChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877654 23344444444455555 7888888888888888766 777888888888888888888888
Q ss_pred HHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 214 FKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 214 ~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
|.+....-..|+ ...|..+.......|++..|.+.|+-....+ ......++.|.-.-.+.|++++|..+++.+.+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777765433232 3456667777777788888888888777664 335667777777777888888888888877665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.9e-10 Score=90.20 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=111.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFC 342 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 342 (485)
+|.-...+.+.|+++.|.+-+..|..+ ....|+.|...+.-.- ..+++.+...-+.-+...+ |....||..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 344444567889999999888887544 2345777776654332 2355666666666666664 455788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhhHHHHHHHH-Hh
Q 011463 343 DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLTYSSLITCF-CK 419 (485)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 419 (485)
+..-++.|-.++.+- |+ .||..+..-.--++.++... .++++++-++.+...- ....-...+..- .+
T Consensus 322 KNeyf~lAADvLAEn------~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 322 KNEYFDLAADVLAEN------AH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEAR 391 (459)
T ss_pred hhHHHhHHHHHHhhC------cc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 999999988887653 33 23332222222445555554 8888887776554320 000001111111 11
Q ss_pred c-CC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 011463 420 K-GD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 420 ~-g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 473 (485)
. ++ ...+++-+++..+. -.....+..+.+++..++..+.+.|.+..+-..
T Consensus 392 ~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 392 HNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred hcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 1 12 12233334433332 122344456678889999999999988776543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=100.42 Aligned_cols=230 Identities=11% Similarity=0.007 Sum_probs=148.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
+.+..+|.+.|-+.+|.+.++..++.. |-+.||..+-..|.+. .+++.|+.++.+-++. ++-++....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 556667777777777777777666543 5556666666666666 6777777777666654 22244444455666666
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
.++.++|.++|+...+.. +.++.....+...|.-.++++-|++.++.+.+.|+. ++..|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 677777777777766652 235555555566666677777777777777777643 666677777777777777777777
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 284 LQMMISKRHRPN--IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
|+++...-..|+ ..+|-.+.......|++..|...|+-....+ ......++.+.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777665533232 3455666666667777777777777666554 335566777766667777777777777766553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-08 Score=89.85 Aligned_cols=411 Identities=13% Similarity=0.120 Sum_probs=268.0
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC-CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKC-DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+..|...+..+.++|+.......|++.+..-+ .....+|...+......|-++.++.++++.++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 44566667778899999999999998877642 224467888888888889999999999999874 5555788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCChH---HHHHHHHhhhhCCCCCC--HHhHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIG------IQPCVASLNVLIKALCKNSGTMD---AAFKIFREMPNRGCTPD--SYTYGTL 197 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l 197 (485)
.++..+++++|.+.+...+... .+.+...|..+...++++ .+.- ....+++.+..+ -+| ...|++|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~-p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN-PDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC-cchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence 8999999999999998876421 234455666666665554 2221 233444444443 233 3578999
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC----------------------CHHHHHHHHHHHHhC
Q 011463 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK----------------------SVEEAMRLFEEMRSK 255 (485)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~ 255 (485)
...|.+.|.++.|..+|++....- .+..-|..+.++|+.-. +++-...-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 999999999999999999987652 24444555555554321 122233334443332
Q ss_pred CC-----------CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHH
Q 011463 256 GV-----------EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN------IVTYSTLLNGLCKEGKLQEAVEI 318 (485)
Q Consensus 256 ~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 318 (485)
+. +-+...|..-+ -...|+..+-...+.++... +.|. ...|..+...|-..|+.+.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 10 11222222222 22356677778888887765 2222 34577888899999999999999
Q ss_pred HHHHhHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccc----------chhhhHHHHHHHHhc
Q 011463 319 LDRMKLQGLKPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS----------LHIRIHNTVVQGLCK 385 (485)
Q Consensus 319 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~ 385 (485)
|++..+...+.- ..+|..-...=.+..+++.|+++.++.....-.|....|. ....++...+...-.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999987654322 2345555555667888999999988876532111111221 133444444444434
Q ss_pred C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHh---cCcHHH
Q 011463 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE-GTWSAVMTALWD---RRKMRQ 460 (485)
Q Consensus 386 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~ 460 (485)
. .++....+|+++.+..+. ++.......-.+-.+.-++++.+++++-+..=-.|.. ..|+..+.-+.+ .-+++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4 778888899999988776 4444444444555667789999999887766223443 467776665543 247999
Q ss_pred HHHHHHHHHHcCC
Q 011463 461 AAELLLLELMNKC 473 (485)
Q Consensus 461 A~~~~~~~~~~~~ 473 (485)
|+.+|+++++..+
T Consensus 569 aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 569 ARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-09 Score=93.05 Aligned_cols=271 Identities=14% Similarity=0.063 Sum_probs=119.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
.++.|+.....+...+...|+.++|+..|+.....++. +..........+...|+.+....+...+.... ..+...|.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 44455555555555555555555555555555544332 22222233333344455555555555444321 12333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
.-+......++++.|+.+-++.++.+ |...--..+-..+..+.++.++|.-.|+...... +.+..+|.-|+.+|...
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhh
Confidence 44444444555555555555555432 2222222221222222255555555555544431 12445555555555555
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHH-HH-HHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHcCCChHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLI-NG-LCQSKSVEEAMRLFEEMRSKGVEPN-VFTYSSLMDGLCKGGCSSQAM 281 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll-~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 281 (485)
|.+.+|.-.-+...+. .+.+..+...+. .. +.....-++|.++++..... .|+ ....+.+...|...|..+.++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence 5555554433332221 112233332221 11 11122234455555544433 222 223344444555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.+++..+.. .||....+.|.+.+...+.+.+|.+.|....+.
T Consensus 459 ~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 459 KLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 555554442 335555555555555555555555555554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-10 Score=102.28 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=159.7
Q ss_pred cCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh
Q 011463 43 ANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 122 (485)
..|+.|+..+|..+|.-|+..|+.+.|- +|..|.....+.+...|+.++..+...++.+.+. .|.+.+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 5789999999999999999999999999 9999988888888999999999999999888776 588999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-CCCCCCHHhHHHHHHHH
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-RGCTPDSYTYGTLINGL 201 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 201 (485)
|..+..+|...|+... ++..++ ....+...+... |.-.....++..+.- .+.-||... .+...
T Consensus 86 yt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~-Gvgs~e~~fl~k~~c~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDH-GVGSPERWFLMKIHCCPHSLPDAEN---AILLL 149 (1088)
T ss_pred HHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhh-ccCcHHHHHHhhcccCcccchhHHH---HHHHH
Confidence 9999999999999765 222222 111122223333 443444444433221 122233222 22233
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHH
Q 011463 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK-SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280 (485)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (485)
...|-++.+++++..+.-..... .+..+++-+.... .+++...+.....+ .|++.+|..++.+-...|+.+.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 34455555555555443221110 0111122222222 12222222222221 35666666666666666666666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC
Q 011463 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (485)
..++..|.+.|++.+..-|..|+-+ .++...++.+++.|.+.|+.|+..|+...+..+..+|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666666666666655555543 5666666666666666666666666666555555533
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-10 Score=96.75 Aligned_cols=225 Identities=13% Similarity=0.018 Sum_probs=141.8
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
....+..+.++..+.+++.............|..+...+...|++++|...|++.++..+. +...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCH
Confidence 4445666778888877773111111112455777778888888888888888888887765 678888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHh
Q 011463 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFRE 181 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 181 (485)
++|...|++..+.+ |.+..+|..+..++...|++++|.+.+++..+.. |+.............. ++.++|...+..
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~-~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESK-LDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 88888888888754 3356677778888888888888888888888754 5433222222222233 778888888866
Q ss_pred hhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC---C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 182 MPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA---C---SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..... .++...+ .......|+...+ +.+..+.+.. + +.....|..+...+.+.|++++|...|+...+.
T Consensus 191 ~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 54332 2222221 2223334555443 2444443210 0 012345667777777777777777777777765
Q ss_pred C
Q 011463 256 G 256 (485)
Q Consensus 256 ~ 256 (485)
+
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6e-10 Score=101.16 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CC--CC
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSK-----G--VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK----RH--RP 294 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~ 294 (485)
+++.|...|...|++++|.++++.+.+. + ..-....++.+...|.+.+.+.+|.++|.+.... |+ +.
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 4455555555555555555555544322 0 1111233444555555555555555555443221 11 11
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMK 323 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 323 (485)
...+|..|...|.+.|+++.|.++.+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23445555555555555555555555443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=84.72 Aligned_cols=197 Identities=11% Similarity=-0.000 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...+.-.|...|++..|..-++++++.++. +..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 444455555666666666666666555544 45555555555556666666666666555543 3344555555555555
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHH
Q 011463 133 ENQLKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (485)
.|++++|.+.|++....- ......++..+.-+..+. |+.+.|...|++..+.... ...+...+.....+.|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 666666666665555431 111122333333333444 5666666666665555322 3344455555555666666666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 212 ELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
..++.....+. ++..+.-..|+.-...|+.+.+.+.=.++..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555433 4555555555555555665555555444444
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-08 Score=90.16 Aligned_cols=415 Identities=12% Similarity=0.087 Sum_probs=232.6
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
.++....||++.|+..|..++ .--|+|...|+.-..+|+..|++++|++--.+..+..|. -...|.....++.-.
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai----~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAI----MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGL 83 (539)
T ss_pred HHhhcccccHHHHHHHHHHHH----ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhc
Confidence 356778999999999999999 344668899999999999999999999988888887654 456899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHH---HHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCCh
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKL---AFRFYRHMREI---GIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
|++++|+..|.+-++.. +.+...+..+..++........ --.++..+... ........|..++..+-+...++
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999998874 4456677777777621110000 00011111100 00001112222222221110000
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHH-------HHHcCC--------Hh----HHHHHHHHHHH-CCCCCChhhHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLING-------LCRLGK--------IY----EAKELFKEMET-KACSPTVVTYTSL 232 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~--------~~----~a~~~~~~~~~-~~~~~~~~~~~~l 232 (485)
..= .. +.....++... ....|. +. .......++.+ .....-......+
T Consensus 163 ~~~-----------l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 163 KLY-----------LN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred hcc-----------cc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 000 00 11000000000 000000 00 00000000000 0000011224456
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH-------HHHH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST-------LLNG 305 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~ 305 (485)
.++..+..+++.|++.+....... -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 666777778888888888877764 35555666677777777777777766666655432 2222222 3335
Q ss_pred HHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc
Q 011463 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385 (485)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (485)
|.+.++++.++..|.+.......|+ ...+....+++....+...- +.|....- .- .-...+.+
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e-----~r-~kGne~Fk 370 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAY--INPEKAEE-----ER-EKGNEAFK 370 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHh--hChhHHHH-----HH-HHHHHHHh
Confidence 5556777888888877665432222 12223334444444443332 12322110 00 11222333
Q ss_pred C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHH
Q 011463 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAE 463 (485)
Q Consensus 386 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 463 (485)
. ++..|+..|.++++..+. |...|....-+|.+.|.+..|++-.+..++. .|+ ...|..=+.++....++++|.+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 788888888888877765 7778888888888888888888877777765 333 3334444555666677778888
Q ss_pred HHHHHHHcCCC
Q 011463 464 LLLLELMNKCV 474 (485)
Q Consensus 464 ~~~~~~~~~~~ 474 (485)
.|++.++.+..
T Consensus 448 ay~eale~dp~ 458 (539)
T KOG0548|consen 448 AYQEALELDPS 458 (539)
T ss_pred HHHHHHhcCch
Confidence 88777776643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-08 Score=88.22 Aligned_cols=404 Identities=13% Similarity=0.035 Sum_probs=260.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC-CHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI-TEDIFLSICR 93 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 93 (485)
+..+.-.+...|+++.+.+.||+.. ...--..+.|..+...+...|.-..|..+++........| +...+.....
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~----~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQAL----PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4556677889999999999999998 3444567789999999999999999999999887776444 3334444444
Q ss_pred HHh-ccCChhhHHHHHHHHHhc--CC--CCCHhhHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcCC-CCCHH
Q 011463 94 GYG-RVHRPLDAMRVFDKMKEF--GC--EPTPKSYITVLAILVE-----------ENQLKLAFRFYRHMREIGI-QPCVA 156 (485)
Q Consensus 94 ~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~-~~~~~ 156 (485)
.|. +.+..+++++.-.++... +. ...+..|..+.-+|.. .....++.+.+++..+.+. .|+..
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 444 457778887777776652 11 1234455555555542 1235678888888887652 23332
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011463 157 SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL 236 (485)
Q Consensus 157 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 236 (485)
.| .-+ .++.. ++++.|.+..++..+.+...+...|..|.-.+...+++.+|+.+.+...+.- ..|......-+..-
T Consensus 482 f~-lal-q~A~~-R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 482 FY-LAL-QYAEQ-RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIE 557 (799)
T ss_pred HH-HHH-HHHHH-HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhh
Confidence 22 222 34455 8999999999999998667789999999999999999999999998766531 11111111122222
Q ss_pred HccCCHHHHHHHHHHHHhC-----CCCC---CHhhHHHHHHHHHcCCChHHHHHHHHHH-----------------HhCC
Q 011463 237 CQSKSVEEAMRLFEEMRSK-----GVEP---NVFTYSSLMDGLCKGGCSSQAMELLQMM-----------------ISKR 291 (485)
Q Consensus 237 ~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~ 291 (485)
...++.+++......+... ++.. .......-.......++..++.+....+ ....
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 3345666655544443221 0000 0000000000000011111111111111 1111
Q ss_pred CCC--C------hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011463 292 HRP--N------IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGIT 363 (485)
Q Consensus 292 ~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 363 (485)
..| + ...|......+.+.++.++|...+.+..... +.....|......+...|..++|.+.|..... +.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 111 2 1234455667788899999988888777653 55677888888889999999999999999887 45
Q ss_pred CCcccccchhhhHHHHHHHHhcC-ChhHHHH--HHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 364 PNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQ--VYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
|+...- ..++...+... +..-|.. ++..+.+.++. +...|-.+...+-+.|+.+.|.+.|....+.
T Consensus 715 P~hv~s------~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 715 PDHVPS------MTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred CCCcHH------HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 664322 22566666655 5555555 99999998877 8999999999999999999999999998875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-09 Score=97.77 Aligned_cols=246 Identities=17% Similarity=0.102 Sum_probs=163.9
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-----CC-CCCh-hhHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-----AC-SPTV-VTYTSLINGLCQSKSVEEAMRLFEEMRSK-----G- 256 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~- 256 (485)
-..+...+...|...|+++.|+.+++..... |. .|.. ...+.+...|...+++++|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667899999999999999999887653 21 1222 23344667888889999999998887643 2
Q ss_pred -CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC--
Q 011463 257 -VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-----RH-RPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQG-- 326 (485)
Q Consensus 257 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 326 (485)
.+.-..+++.|..+|.+.|++++|..+++.+.+. +. .|. ...++.+...|...+++++|..+++...+.-
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1112355677777889999999888888776542 11 112 2234556667778888888888887654321
Q ss_pred -CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011463 327 -LKP----DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401 (485)
Q Consensus 327 -~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 401 (485)
+.+ -..+++.+...|...|++++|.++++++....-.- ...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~----------------------------------~~~ 403 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL----------------------------------LGK 403 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc----------------------------------ccC
Confidence 111 23578888888888888888888888876421000 000
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----G--CLPDEGTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
...-....++.+...|.+.+.+.+|.++|.+...- | .+-...+|..|...|.+.|+++.|.++.++++
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 00112345677778888888888888887775432 2 11223467778888889999999998888876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.1e-09 Score=82.70 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=137.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
.+...+.-.|...|++..|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|..-..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 345566667777788888887777777764 4456677777777777788888888887777754 22345666666667
Q ss_pred HhcCCChHHHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHH
Q 011463 166 CKNSGTMDAAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
|.. |.+++|...|++....- ...-..+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++..
T Consensus 114 C~q-g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 114 CAQ-GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HhC-CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 776 77888887777777652 1223456777777777778888888777777765322 34556666777777777777
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
|...++.....+. ++..+....|+.-...|+-+.+.++=.++...
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 7777777776653 67777777777777777777777766666554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-09 Score=93.56 Aligned_cols=194 Identities=15% Similarity=-0.017 Sum_probs=144.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+.....++...|++++|+..|++++ ...|.++..|..+...+...|++++|.+.|+++++..+. +..++..+..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al----~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQAL----ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 5566778899999999999999999 344667899999999999999999999999999998766 67788889999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+...|++++|++.|++..+.+ |+..........+...++.++|...+.+..... .|+...+ .+... .. |+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~l-g~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YL-GKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--Hc-cCCCH
Confidence 999999999999999998864 443322222333456788999999997765432 2333222 22222 22 55544
Q ss_pred HHHHHHhhhh---CCC---CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 175 AFKIFREMPN---RGC---TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 175 a~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
+ ..++.+.+ ..+ +.....|..+...+.+.|++++|...|++.....
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 24444432 111 1134678999999999999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=74.76 Aligned_cols=50 Identities=28% Similarity=0.592 Sum_probs=48.2
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD 454 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 454 (485)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-07 Score=86.16 Aligned_cols=306 Identities=12% Similarity=-0.001 Sum_probs=167.2
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCH-HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
.+..|..+...+...|+.+.+.+.+.......+. ++. .........+...|++++|.+.+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 3556666666677777777766666665554332 121 222223344556778888888887777653 334434332
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHH
Q 011463 127 LAILVE----ENQLKLAFRFYRHMREIGIQPCVASLN-VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201 (485)
Q Consensus 127 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (485)
...+.. .+....+.+.+.. .....|+..... .+...+... |++++|...+++..+.... +...+..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA-GQYDRAEEAARRALELNPD-DAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 222222 3444444444443 111223333222 333344444 8888888888888776433 556677777788
Q ss_pred HHcCCHhHHHHHHHHHHHCCCC-CCh--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHhhH-H--HHHHHHHcC
Q 011463 202 CRLGKIYEAKELFKEMETKACS-PTV--VTYTSLINGLCQSKSVEEAMRLFEEMRSKGV-EPNVFTY-S--SLMDGLCKG 274 (485)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~ 274 (485)
...|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 8888888888888877664221 222 2344566777888888888888888754322 1111111 1 223333334
Q ss_pred CChHHHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC------C--CHHhHHHHHHHHH
Q 011463 275 GCSSQAMEL--L-QMMISKRH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK------P--DAGLYGKIISCFC 342 (485)
Q Consensus 275 ~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~ 342 (485)
|....+.++ + ........ ............++...|+.+.|..++..+...... . ..........++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 433333333 2 11111100 111122224566677889999999999887653211 0 1112222233456
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011463 343 DIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~ 360 (485)
..|++++|.+.+.+....
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-07 Score=76.73 Aligned_cols=299 Identities=11% Similarity=0.063 Sum_probs=220.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-DIFLSICRG 94 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 94 (485)
..+...+...|++.+|+.-|..++ .+.|.+-.++..-...|...|+...|+.-+.++++..+ |- ..-..-...
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKp--DF~~ARiQRg~v 115 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKP--DFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCc--cHHHHHHHhchh
Confidence 346677888999999999999999 56566666777778899999999999999999998754 33 233445567
Q ss_pred HhccCChhhHHHHHHHHHhcCCCC--CHhh----------H--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEP--TPKS----------Y--ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~----------~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+.+.|.++.|..-|+.++...... .... | ...+..+...|+...|++....+++.. +.+...+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 889999999999999998764211 1111 1 223445667889999999999999854 356666666
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhh----HHHH----
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVT----YTSL---- 232 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l---- 232 (485)
-..+|... |++..|+.-++...+..-. +..++..+-..+...|+.+.++...++.++. .||... |..+
T Consensus 195 Rakc~i~~-~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAE-GEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 77777777 9999999888887776433 6667777888899999999999999998875 444322 2111
Q ss_pred -----HHHHHccCCHHHHHHHHHHHHhCCCCCCHh---hHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 233 -----INGLCQSKSVEEAMRLFEEMRSKGVEPNVF---TYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 233 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
+....+.++|.+++.-.+...+........ .+..+-.++...|++.+|++.-.+++... +.|+.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 223445677888888888877764332222 34456667778899999999999988763 225788888888
Q ss_pred HHHhcCCHHHHHHHHHHHhHCC
Q 011463 305 GLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
+|.-...++.|+.-|+...+.+
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcC
Confidence 8988889999999998888764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=73.36 Aligned_cols=47 Identities=47% Similarity=1.006 Sum_probs=20.2
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL 271 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (485)
|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-07 Score=78.91 Aligned_cols=416 Identities=11% Similarity=0.090 Sum_probs=240.9
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
+..|.|..+|+.+++-+-.+ ..+++.+.++++...-+. ++..|..-+..-.+.++++....+|.+.+.. ..+...|
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~-s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS-SPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 35577888888888876555 888888999888877554 6778888888888888999999999887764 3467777
Q ss_pred HHHHHHHHH-cCCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---------hcCCChHHHHHHHHhhhhCCC
Q 011463 124 ITVLAILVE-ENQLKL----AFRFYRHMR-EIGIQPCV-ASLNVLIKALC---------KNSGTMDAAFKIFREMPNRGC 187 (485)
Q Consensus 124 ~~l~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~~~---------~~~~~~~~a~~~~~~~~~~~~ 187 (485)
...+.--.+ .++... ..+.|+-.. +.|+.+-. ..|+..+..+- .+ .+++...++++++...-+
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~-QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEEN-QRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHH-HHHHHHHHHHHHHhcCcc
Confidence 766653332 233333 233333333 34543322 23444443321 22 345556666777665422
Q ss_pred CCCHHhHHHHHHH-------------HHHcCCHhHHHHHHHHHHHC--CCCCChhh---------------HHHHHHHHH
Q 011463 188 TPDSYTYGTLING-------------LCRLGKIYEAKELFKEMETK--ACSPTVVT---------------YTSLINGLC 237 (485)
Q Consensus 188 ~~~~~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~ll~~~~ 237 (485)
.-=...|+-.... --+...+-.|.++++++... |......+ |..+|..=.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEk 248 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEK 248 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 2112233322110 01222355566666665421 22111111 222222111
Q ss_pred ccC------C--HHHHHHHHHHHH-hCCCCCCHhhHH-----HHHHHHHcCCC-------hHHHHHHHHHHHhCCCCCCh
Q 011463 238 QSK------S--VEEAMRLFEEMR-SKGVEPNVFTYS-----SLMDGLCKGGC-------SSQAMELLQMMISKRHRPNI 296 (485)
Q Consensus 238 ~~~------~--~~~a~~~~~~~~-~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~ 296 (485)
..+ . -....-.+++.. -.+..|+..... ...+.+...|+ -+++..+++..+..-..-+.
T Consensus 249 sNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~ 328 (656)
T KOG1914|consen 249 SNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENK 328 (656)
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 0 011111222221 112233221110 11112223333 34555566655544222233
Q ss_pred hhHHHHHHHHHhcC---CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchh
Q 011463 297 VTYSTLLNGLCKEG---KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373 (485)
Q Consensus 297 ~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.+|..+...--..- ..+....+++++...-..--.-+|...+..-.+..-...|..+|.++.+.+..+- ++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h------hV 402 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH------HV 402 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc------hh
Confidence 34433333211111 2555566666665542222234677788888888889999999999988765551 23
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 011463 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD--EGTWSAVMTA 451 (485)
Q Consensus 374 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~ 451 (485)
-+.++++..+|..+.+-|.++|+--.+.-.+ ++......++-+...|+-..+..+|++....++.|+ ...|..++.-
T Consensus 403 fVa~A~mEy~cskD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 403 FVAAALMEYYCSKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 3556999999999999999999988765433 556667788888999999999999999998866655 4689999988
Q ss_pred HHhcCcHHHHHHHHHHHHHc
Q 011463 452 LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~ 471 (485)
=..-|+...++++-++....
T Consensus 482 ES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 88999999999888877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-08 Score=80.62 Aligned_cols=390 Identities=15% Similarity=0.087 Sum_probs=243.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH-HHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS-ICR 93 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 93 (485)
+..++..+.+..++.+|++++..-. +..+.+....+.+..+|....++..|-+.++++....| ....|.. -.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~----Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQ 86 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSEL----ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQ 86 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHH
Confidence 4566777889999999999998777 34455788899999999999999999999999987643 3333332 234
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA--ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+-+.+.+..|+.+...|... ++...-..-+. .....+++..+..++++....| +..+.+.......+. |+
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke-gq 159 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE-GQ 159 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc-cc
Confidence 566789999999999888753 22222222222 2335788888888888776433 344444444455676 99
Q ss_pred hHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-------------Chh----------
Q 011463 172 MDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-------------TVV---------- 227 (485)
Q Consensus 172 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------- 227 (485)
++.|.+-|+...+- |.. ....|+ +.-++.+.+++..|++...++.++|++. |..
T Consensus 160 yEaAvqkFqaAlqvsGyq-pllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQ-PLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCC-chhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 99999999998886 444 445665 4456678899999999999998876432 111
Q ss_pred -----hHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 228 -----TYTSLINGLCQSKSVEEAMRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 228 -----~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
.+|.-...+.+.++++.|.+.+-+|.-+ ....|+.|...+.-. --.+++.+..+-++-++..++- ...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence 1233333466788999998888877532 235577777665432 2245566777777777776553 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCC-CCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHH
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGL-KPDAGLYGKIISCFC-DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTV 379 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 379 (485)
++-.|++..-++.|-+++.+-...-. -.+...|+ ++.++. ..-..+++.+-++.+...-. + ... ...
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~--~--kLR------klA 384 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLT--E--KLR------KLA 384 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHH--H--HHH------HHH
Confidence 99999999999999888765322110 11233333 333333 33456666665555432100 0 000 011
Q ss_pred HHHHh-cC-----ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 380 VQGLC-KT-----DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 380 ~~~~~-~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+..-. +. ....+++-|++..+. -..+...-.+.|.+..++..+.++|+.-.+-
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111 11 122233333333332 1112233345566788999999999887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=85.71 Aligned_cols=309 Identities=13% Similarity=-0.018 Sum_probs=188.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+..+...+...|+.+.+.+.+........... ............+...|++++|.+.++++.+..|. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA-TERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 344566667777778889998888888774322121 12233334455678899999999999999988654 4444442
Q ss_pred HHHHHh----ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 91 ICRGYG----RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 91 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
...+. ..+....+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 22222 24555555555554211 112233445566678889999999999999999865 233455666666777
Q ss_pred hcCCChHHHHHHHHhhhhCCC-CCCH--HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChhhH-H--HHHHHHHcc
Q 011463 167 KNSGTMDAAFKIFREMPNRGC-TPDS--YTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTY-T--SLINGLCQS 239 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~ 239 (485)
.. |++++|...+++..+... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...
T Consensus 160 ~~-g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 160 MQ-GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred Hc-CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 76 999999999999887632 1222 3455788899999999999999999864322 1111111 1 223333333
Q ss_pred CCHHHHHHH---HHHHHhCCC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC---CC---hhhHHHH--HHHHH
Q 011463 240 KSVEEAMRL---FEEMRSKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR---PN---IVTYSTL--LNGLC 307 (485)
Q Consensus 240 ~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~---~~~~~~l--~~~~~ 307 (485)
|....+.+. ......... ............++...|+.+.|..+++.+...... -. ..+-..+ .-++.
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 432222222 111111100 111122234666778899999999999988664221 01 1112222 23456
Q ss_pred hcCCHHHHHHHHHHHhHC
Q 011463 308 KEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (485)
..|+.++|...+......
T Consensus 319 ~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 319 AEGNYATALELLGPVRDD 336 (355)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 889999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-06 Score=78.08 Aligned_cols=392 Identities=13% Similarity=0.123 Sum_probs=223.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
.=+..+...|++++|.....+++..+++ +...+..-+-+..+.+++++|+.+.+.-... ..+..-+.--..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 3356678899999999999999998865 7788888888999999999999666543321 111111123344556899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..++|+..++-+.. .+..+...-...+++. |++++|.++|+.+.+.+... +...-..++.+-. -..+. +
T Consensus 94 k~Dealk~~~~~~~----~~~~ll~L~AQvlYrl-~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDR----LDDKLLELRAQVLYRL-ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L 163 (652)
T ss_pred cHHHHHHHHhcccc----cchHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H
Confidence 99999999882221 2334666666777888 99999999999998875331 2222222222111 11111 2
Q ss_pred HHHHHHCCCCCChhhHHH---HHHHHHccCCHHHHHHHHHHHHhC-------CCCC------CHh-hHHHHHHHHHcCCC
Q 011463 214 FKEMETKACSPTVVTYTS---LINGLCQSKSVEEAMRLFEEMRSK-------GVEP------NVF-TYSSLMDGLCKGGC 276 (485)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~------~~~-~~~~l~~~~~~~~~ 276 (485)
.+... ..| ..+|.. ..-.+...|++.+|+++++...+. +-.. ... .-..+.-++...|+
T Consensus 164 ~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 164 LQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22222 122 223333 344566789999999999988321 1010 111 12234556678999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhcCCH-----------------HHHHHHH----------------
Q 011463 277 SSQAMELLQMMISKRHRPNIVTY----STLLNGLCKEGKL-----------------QEAVEIL---------------- 319 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-----------------~~a~~~~---------------- 319 (485)
..+|..++...++.... |.... |.++. ...-.++ +....-+
T Consensus 240 t~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA-DEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhcCC-CchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887543 32211 11111 1110000 0000000
Q ss_pred ---------HHHhHC--CCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 320 ---------DRMKLQ--GLKPDAGLYGKIISCFC--DIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 320 ---------~~~~~~--~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
++.... +..|. ..+..++.... +......+..++...-+. .|+.... +.-..+......
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~-----v~L~~aQl~is~ 389 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKV-----VLLLRAQLKISQ 389 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHH-----HHHHHHHHHHhc
Confidence 000000 11121 22333333222 222456666666666543 2333111 111444444555
Q ss_pred -ChhHHHHHHH--------HHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCh----hhHHHHHHH
Q 011463 387 -DPNRAFQVYL--------SMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD--GCLPDE----GTWSAVMTA 451 (485)
Q Consensus 387 -~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~----~~~~~l~~~ 451 (485)
+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++.+.+.. .-.+.. .++..++..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 9999999998 5554443 3455666777788888877777777776643 111222 233334444
Q ss_pred HHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 452 LWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
-.+.|+-++|...++++.+.+..+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCch
Confidence 457799999999999999965433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-06 Score=71.72 Aligned_cols=359 Identities=12% Similarity=0.098 Sum_probs=244.8
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh-hHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK-SYIT 125 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 125 (485)
+.++.-...+...+...|++..|+.-|..+.+.++. +-.++..-...|...|+-..|+.-+.+.++. +||-. +-..
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 345666778889999999999999999999987544 3444445567899999999999999999885 56643 3344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVA----------------SLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP 189 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 189 (485)
-...+.++|.+++|..-|+..+... |+.. .....+..+... |+...|+.....+++.. +.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~-GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGS-GDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHhcC-cc
Confidence 4567889999999999999998865 3211 122233444455 89999999999998874 34
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH----H
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY----S 265 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~ 265 (485)
+...+..-..+|...|++..|+.=++...+... .+...+-.+-..+...|+.+.++...++..+. .||.... .
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 888888889999999999999888877766533 35566667777888889999999888888875 4554321 1
Q ss_pred HH---------HHHHHcCCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh
Q 011463 266 SL---------MDGLCKGGCSSQAMELLQMMISKRHRPNI---VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL 333 (485)
Q Consensus 266 ~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (485)
.+ +......+++.++++-.+...+..+.... ..+..+-.++...+++.+|+....+..+.. +.|..+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11 12233466777777777777766443222 234445556677788889988888887753 344778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSL 413 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 413 (485)
+..-..+|.-...++.|+.-|+...+.+ ++.... +...+.|.++.+...++ | .|-.|
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n--~sn~~~---------------reGle~Akrlkkqs~kR----D--YYKIL 400 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN--ESNTRA---------------REGLERAKRLKKQSGKR----D--YYKIL 400 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC--cccHHH---------------HHHHHHHHHHHHHhccc----h--HHHHh
Confidence 8888888888888999999988887743 322110 11234444443333322 1 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCLPDE 442 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 442 (485)
+--++-.-.+..+.|++|... ..||.
T Consensus 401 --GVkRnAsKqEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 401 --GVKRNASKQEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred --hhcccccHHHHHHHHHHHHHh-cCCcc
Confidence 223444556777777777765 45653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-07 Score=84.41 Aligned_cols=229 Identities=14% Similarity=0.128 Sum_probs=139.5
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC---------CCCCHHHHHHHH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK---------CDITEDIFLSIC 92 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~ 92 (485)
|...|+.+.|.+..+.+. +...|..+.+.|.+.++++-|.-.+..|.... ..++ +.-....
T Consensus 738 yvtiG~MD~AfksI~~Ik---------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK---------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHHh---------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHH
Confidence 456789999988887776 45679999999999988888777665554321 1121 2222333
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
......|..++|+.+|++-+. |..+=..|-..|.+++|.++-+.--+..++ .||......+-.. ++.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear-~Di 874 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEAR-RDI 874 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhh-ccH
Confidence 344567889999999988765 334555677789999998887654443332 2343344333333 788
Q ss_pred HHHHHHHHhhhhCC-------------------CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 173 DAAFKIFREMPNRG-------------------CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 173 ~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+.|++.|++.-... -..|...|.-....+-..|+.+.|+.+|..... |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 88888776542210 112334444455555566777777777776543 33444
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+..+-.|+.++|-++-++-. |......+.+.|...|++.+|..+|.++.
T Consensus 946 rI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555566666655544321 34444456666666677777666666553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-06 Score=89.20 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=206.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCC------CCC--HHhHHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIG--IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGC------TPD--SYTYGTLI 198 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~ 198 (485)
.....|++..+..++..+.... -.|.. .......+... |+++++...+......-. .+. ......+.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l--~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRL--VLLQAWLAQSQ-HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcch--HHHHHHHHHHC-CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3445677777666666542111 11222 22222333444 899999999887754310 111 12223344
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHH
Q 011463 199 NGLCRLGKIYEAKELFKEMETKACSPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMD 269 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~ 269 (485)
..+...|++++|...+++........+. ...+.+...+...|++++|...+++.... +. .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 5567899999999999987763111121 23455666778899999999999887643 11 111234556677
Q ss_pred HHHcCCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC--CCC--CHHhHHHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISK----RHR--P-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG--LKP--DAGLYGKII 338 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~ 338 (485)
.+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998887653 211 1 12234455566777899999999988875431 111 233445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccc---hhhHHHH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVD---SLTYSSL 413 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~---~~~~~~l 413 (485)
..+...|++++|...+.+......... ...+. ..........+... +.+.|.+.+........... ...+..+
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWI--ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh--hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 778889999999999988865311111 11110 00000111222223 77888888766554221111 1113466
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 414 ITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..++...|++++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.++++..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999988754 32222 2345566778889999999999999998865
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-09 Score=88.37 Aligned_cols=249 Identities=14% Similarity=0.062 Sum_probs=94.7
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
+-..-.|+++.++.-.+ .. ....+.+......+.+++...|+++.++ .++.... .|.......+...+...+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~---~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~ 80 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LK---SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPS 80 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CH---TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTST
T ss_pred HHHHHhhhHHHHHHHhh-cc---CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCcc
Confidence 33444566666665555 22 1111122334444556666666544322 2222222 334444433333333323
Q ss_pred ChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
+-+.++.-++........+ +..........+...|++++|++++... .+.......+..+.+. ++++.|.+.
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~-~R~dlA~k~ 153 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKM-NRPDLAEKE 153 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHT-T-HHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHc-CCHHHHHHH
Confidence 3344444333332221111 1111111222333345555555444321 2233333444444444 555555555
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
++.|.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+..+
T Consensus 154 l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 154 LKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55554431 11 122222222211 12345555555554332 233444444444445555555555555444443
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCh-HHHHHHHHHHH
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCS-SQAMELLQMMI 288 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 288 (485)
.+ +-++.++..++-+....|+. +.+.+++.++.
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 32 22333444444444444444 33344444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-09 Score=89.14 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=122.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHH
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLC 307 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 307 (485)
...+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-++........ .+..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334455555556554332 2222222 444444444444443333334444433333222222 12222222223445
Q ss_pred hcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-
Q 011463 308 KEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT- 386 (485)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 386 (485)
..|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+.. .+..+.+......
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~---qLa~awv~l~~g~e 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILT---QLAEAWVNLATGGE 181 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHH---HHHHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHH---HHHHHHHHHHhCch
Confidence 567777776666432 245556666677777777777777777776532 22 2221 2222333333333
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcH-HHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM-RQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 465 (485)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+ +-+..++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 677888888887664 34477778888888888888888888888877653 33555666677777777777 5566777
Q ss_pred HHHHHcCCCcc
Q 011463 466 LLELMNKCVEA 476 (485)
Q Consensus 466 ~~~~~~~~~~~ 476 (485)
.++....+..+
T Consensus 260 ~qL~~~~p~h~ 270 (290)
T PF04733_consen 260 SQLKQSNPNHP 270 (290)
T ss_dssp HHCHHHTTTSH
T ss_pred HHHHHhCCCCh
Confidence 77666554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-06 Score=87.77 Aligned_cols=337 Identities=10% Similarity=-0.010 Sum_probs=156.3
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCCH-HHHHHHHH-HHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI------QPCV-ASLNVLIK-ALC 166 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~ll~-~~~ 166 (485)
....|++..+..+++.+.......++.........+...|+++++..++......-- .+.. .....+.. .+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344556665555555542211111222223333444556666666666665543210 0111 11111111 222
Q ss_pred hcCCChHHHHHHHHhhhhCCCCCC----HHhHHHHHHHHHHcCCHhHHHHHHHHHHHC----CC-CCChhhHHHHHHHHH
Q 011463 167 KNSGTMDAAFKIFREMPNRGCTPD----SYTYGTLINGLCRLGKIYEAKELFKEMETK----AC-SPTVVTYTSLINGLC 237 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~ 237 (485)
.. |+++.|...++...+.-...+ ....+.+...+...|++++|...+.+.... +. .....++..+...+.
T Consensus 464 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 ND-GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hC-CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 33 666776666666554211111 123344555566667777766666665432 10 011223444555566
Q ss_pred ccCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSK----GVE--P-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKR--HRP--NIVTYSTLLNGL 306 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 306 (485)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 667777776666654431 111 1 12233344445555677777766666654421 111 122333344555
Q ss_pred HhcCCHHHHHHHHHHHhHCC--CCCCHH--hH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQG--LKPDAG--LY--GKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVV 380 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 380 (485)
...|+++.|...+....... ...... .. ...+..+...|+.+.|..++........ ... +. .......+.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--~~~-~~-~~~~~~~~a 698 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF--ANN-HF-LQGQWRNIA 698 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--ccc-hh-HHHHHHHHH
Confidence 66677777766666653310 000000 00 1112334446666666666655433111 111 10 111111333
Q ss_pred HHHhcC-ChhHHHHHHHHHHhC----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 381 QGLCKT-DPNRAFQVYLSMRNR----SISV-DSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 381 ~~~~~~-~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
..+... ++++|...+++.... +..+ ...+...+..++...|+.++|...+.++.+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444 666666666665432 2111 1234555666777788888888888877765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-08 Score=86.45 Aligned_cols=97 Identities=16% Similarity=0.088 Sum_probs=52.4
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhhHHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN-VFTYSSL 267 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 267 (485)
+|+.....|.-.|.-.|++++|.+.|+..+... +.|...||.|...++...+..+|+..|.+..+. .|. +.+...|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhh
Confidence 455555555555555666666666666655542 224555666666666666666666666666554 222 2233334
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 011463 268 MDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~ 288 (485)
.-.|...|.+++|.+.|-.++
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 445556666666665555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-06 Score=80.00 Aligned_cols=421 Identities=11% Similarity=0.063 Sum_probs=217.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSIC 92 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 92 (485)
.+..|.+.|+...|..+|.+.|+.+- +--+.+..........|++..+++.|..+.-...+..+. .-...|....
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAF----eLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAF----ELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 34567777777778888888888777 233456667777788888888888888774444333211 1123344455
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCC
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL-CKNSGT 171 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~ 171 (485)
-.|.+.++...|+.-|+...+.+ |.|...|..+..+|.+.|++..|.+.|.+.... .|+...-....... +.. |.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~-Gk 645 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDN-GK 645 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHh-hh
Confidence 66777788888888888877654 446778888888888888888888888887763 35443222222222 233 78
Q ss_pred hHHHHHHHHhhhhCC------CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHc
Q 011463 172 MDAAFKIFREMPNRG------CTPDSYTYGTLINGLCRLGKIYEAKELFKEMET-------KACSPTVVTYTSLINGLCQ 238 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~ 238 (485)
+.++...+..+...- ..--..++-.+...+.-.|-..++..++++-.+ .....+...|..+-.+|
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac-- 723 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC-- 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH--
Confidence 888887777765431 111122333333333333433444444443322 11111222222222222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCh---H---HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS---S---QAMELLQMMISKRHRPNIVTYSTLLNGLCK---- 308 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 308 (485)
.+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++ ...++.+|..++..|.+
T Consensus 724 --------~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 724 --------YIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred --------HHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHH
Confidence 2222221 11 11221111111111111111 1 11111111111 11123344444443332
Q ss_pred c----CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh
Q 011463 309 E----GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC 384 (485)
Q Consensus 309 ~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (485)
. .+...|...+...++.. ..+..+|+.|.-. ...|++.-+.-.|-+-.... +.+..+|. .+...+.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~-------NlgvL~l 861 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWL-------NLGVLVL 861 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhhee-------ccceeEE
Confidence 1 12235666666655442 2345556655543 55566666666655544432 22333443 3444444
Q ss_pred cC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCChhhHHHHHHHHHhcCcHH
Q 011463 385 KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL--V--LDGCLPDEGTWSAVMTALWDRRKMR 459 (485)
Q Consensus 385 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~p~~~~~~~l~~~~~~~g~~~ 459 (485)
.. +++-|...|.+.....|. +...|-.....-...|+.-++..+|..- . ..|-.|+...|.........+|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 55 778888888877776554 6666665555555667777777777652 1 1233456566655555566667666
Q ss_pred HHHHHHHH
Q 011463 460 QAAELLLL 467 (485)
Q Consensus 460 ~A~~~~~~ 467 (485)
+-+...++
T Consensus 941 ~~I~t~~k 948 (1238)
T KOG1127|consen 941 ESINTARK 948 (1238)
T ss_pred HHHHHhhh
Confidence 65554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-07 Score=84.32 Aligned_cols=143 Identities=14% Similarity=0.076 Sum_probs=107.1
Q ss_pred HHHHHHHH-HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 210 AKELFKEM-ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 210 a~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
..++|-++ ...+..+|......|.-.|.-.|++++|...|+.+.... +-|...||.|...++...+.++|+.-|.+++
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 34444444 444545678888888899999999999999999999874 4578889999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---------CCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ---------GLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
+..+. =+.+...|.-+|...|.+++|.+.|-..+.. +..++...|..|=.++...++.|.+.+..
T Consensus 492 qLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 492 QLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 87433 2445556777899999999999988765432 11234567777767777777777555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.8e-05 Score=73.74 Aligned_cols=322 Identities=16% Similarity=0.250 Sum_probs=214.2
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
.|++..+..+.++...+-+.+.+++++++.-.+.. -+...-+.|+-... .-+.....+..+++-.-+ .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------
Confidence 35666777788888888888999999888654311 12233344443333 345566666666665432 122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+...+...+-+++|+.+|++.- .+....+.++.. -++.+.|.++-++.. .+..|+.+..+-.+.|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~----i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN----IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH----hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcC
Confidence 3345566777889999888753 455566666654 377788887766654 4578999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
...+|++-|-+. .|+..|..++....+.|.+++..+.+...++...+|... +.++-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 999998877654 377789999999999999999999998887776566554 478889999998877655542
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
.|+......+.+-|...|.++.|.-++.. ...|..+...+...|++..|...-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 35777777888888888888888777653 345777777788888888877665544 33
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELV 434 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 434 (485)
..+|. .+..+|... .+. +.+|...++-....-...++.-|-..|-+++.+.+++...
T Consensus 1249 ~ktWK-------~VcfaCvd~~EFr-----lAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1249 TKTWK-------EVCFACVDKEEFR-----LAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHHH-------HHHHHHhchhhhh-----HHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 44554 333333332 111 2233333333344445566666666666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-06 Score=75.41 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=102.8
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
.++...++.++|+.+++.++ ...|.+..+|.....++...| +++++++.++.+...+++ +..+|+.....+.+.
T Consensus 45 a~l~~~e~serAL~lt~~aI----~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLTADVI----RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 34455556666666666666 222334445555555555555 456666666666666554 445555554444444
Q ss_pred CCh--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCC---
Q 011463 99 HRP--LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--SGT--- 171 (485)
Q Consensus 99 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~--- 171 (485)
|+. ++++..++++.+.+ +-+..+|....-++...|+++++++.++++++.+. -+...|+.....+... .|.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccc
Confidence 442 45566666665544 33555666666666666666666666666666542 2333333333222211 011
Q ss_pred -hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 172 -MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL----GKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 172 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
.+....+..++....+. +...|+.+...+... +...+|.+.+.+....+ +.+......|+..|+
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 13344444444443222 445555555554442 22234445444443322 123344444444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-05 Score=73.09 Aligned_cols=102 Identities=23% Similarity=0.314 Sum_probs=49.8
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
..|.+|+.+++.+.... .-...|..+...|+..|+++.|.++|.+.- .++-.+..|.+.|+|+.|.++-
T Consensus 746 kew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHH
Confidence 55566666665555442 122344555555666666666666555431 1334455566666666665555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
++... .+.....|-+-..-.-+.|++.+|.+++
T Consensus 815 ~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 815 EECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 44432 2223333433333344444444444444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.8e-06 Score=72.64 Aligned_cols=214 Identities=12% Similarity=0.060 Sum_probs=137.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
+..+-..+...++.++|+.+.+.++..++. +..+|+....++...| ++++++..++++.+.+ +.+..+|+....++.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334444455677888999999999888766 6677777777777777 5788999998888765 445566776665565
Q ss_pred HcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc---CC
Q 011463 132 EENQL--KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL---GK 206 (485)
Q Consensus 132 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 206 (485)
+.|+. +++..+++++.+.. +-+..+|+...-.+... |+++++++.++++++.++. +..+|+....++.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l-~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTL-GGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 66653 56778887887754 23455666666555555 8888888888888887654 666777766655544 22
Q ss_pred H----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 207 I----YEAKELFKEMETKACSPTVVTYTSLINGLCQS----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 207 ~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
. ++.++...++.... +-+...|+.+...+... ++..+|...+.+..+.+ +.+...+..|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 34555555555542 33566676666666552 23445666666655543 2345555666666653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-06 Score=75.62 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
.+....+.|.+|+.+++.++..+. ...-|..+...|+..|+++.|.++|.+. ..++-.+.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 333444555555555555544321 2223444455555555555555555432 11233444555555555
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.|.++-.+... .......|..-..-+-+.|++.+|.+++
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 55554433321 1222333333333344444444444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-05 Score=75.33 Aligned_cols=357 Identities=17% Similarity=0.174 Sum_probs=204.9
Q ss_pred CHHhHHHHH--HHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-C-------C-C
Q 011463 49 DNSTFSLMI--SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-G-------C-E 117 (485)
Q Consensus 49 ~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~ 117 (485)
|+.+-..++ ..|..-|+++.|.+-++.+. +..+|..+...|.+..+.+-|.-.+-.|... | . .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 455555554 34567899999988887765 4568999999999998888887777666432 1 0 1
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 118 PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
++ ..-..+.-.....|..++|+.+|++..+.. +++.+.+..|.+++|.++-+.--+.. -..||...
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 21 222333334567888999999999887632 33444444599999988776533322 23466666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCh
Q 011463 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277 (485)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (485)
..-+-..++.+.|++.|++.... --..+ .|+. .++.....+.+.+. |...|......+...|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~-rmL~-----e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVF-RMLK-----EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHH-HHHH-----hChHHHHHHHHhcc------chHHHHHHHHHHhcccch
Confidence 77777788899999888875321 11111 1111 12222333333322 445566666667778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 278 SQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
+.|+.+|..+.. |-.+++..+-.|+.++|-.+-++- -|....-.+.+.|-..|++.+|..+|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888887654 344556666778888887776542 25555566778888888888888887776
Q ss_pred HHCCCCCCcccccchhhhHHHHHHHHh--cC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH--
Q 011463 358 VLGGITPNRLTWSLHIRIHNTVVQGLC--KT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE-- 432 (485)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-- 432 (485)
.... |.......-..-..+..... .. +.-.|-++|++.-. .+...+..|-+.|.+.+|+++-=+
T Consensus 994 qafs---nAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 994 QAFS---NAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHH---HHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhc
Confidence 4310 00000000000001111111 11 44445555554321 112233456677777777664211
Q ss_pred ------HHhCCCC--CChhhHHHHHHHHHhcCcHHHHHHHHHH
Q 011463 433 ------LVLDGCL--PDEGTWSAVMTALWDRRKMRQAAELLLL 467 (485)
Q Consensus 433 ------~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 467 (485)
++..++. .|....+.....+....++++|+.++-.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1222222 3455566666666667777777665543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-05 Score=71.19 Aligned_cols=387 Identities=12% Similarity=0.022 Sum_probs=194.6
Q ss_pred ccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH
Q 011463 7 FKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86 (485)
Q Consensus 7 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 86 (485)
++.++.+.|+.=..++...|++++|++=-.+.+ .-.|.-+..|+....++.-.|++++|+..|.+-++..+. +..
T Consensus 31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~----~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~ 105 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTR----RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQ 105 (539)
T ss_pred cCCCccchhcchHHHHHHHhhHHHHHHHHHHHH----hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHH
Confidence 344566667777778999999999998887777 222334778999999999999999999999999998765 667
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH-----HHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL-----AILVEENQLKLAFRFYRHMRE-IGIQPCVASLNV 160 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 160 (485)
.+..+..++..... +.+.| .++..|..+. +.+.....+..-++.+.+-.. .+...+......
T Consensus 106 L~~gl~~a~~~~~~---~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 106 LKTGLAQAYLEDYA---ADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhHHHhhhHHHH---hhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 77777777611100 01111 1111111111 111111111111111111000 000000000000
Q ss_pred HHHHHHhcCCChHHHHHHH------------HhhhhCCC-----------CCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 161 LIKALCKNSGTMDAAFKIF------------REMPNRGC-----------TPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~------------~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
.+..+... +. .....- ........ ..-..-...+.++..+..+++.|++.+...
T Consensus 174 a~~~l~~~-~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 174 ADGQLKGV-DE--LLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHhcC-cc--ccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00000000 00 000000 00000000 001123456778888888999999999888
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-------HHHHHHcCCChHHHHHHHHHHHhC
Q 011463 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS-------LMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.+.. -+..-++....+|...|.+..+....+...+.|-. ...-|+. +..+|.+.++++.+...|.+.+..
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7764 35566677778888999888888887777666522 2222333 333566678888999999887765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA-GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW 369 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (485)
...|+. ..+....+++........-.+ |.. .-...-...+.+.|++..|+..|.++++.. |+...+
T Consensus 328 ~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~l 394 (539)
T KOG0548|consen 328 HRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARL 394 (539)
T ss_pred hcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHH
Confidence 444322 122223334443333333221 111 111112344455556666666666655543 333322
Q ss_pred cchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 370 SLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 370 ~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
. +....+|.+. .+..|+.-.+...+..+. ....|.-=..++....++++|.+.|.+.++.
T Consensus 395 Y------sNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 395 Y------SNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred H------HHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1333333333 444444444444444222 2222222233333344555666666555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-07 Score=82.64 Aligned_cols=212 Identities=17% Similarity=0.159 Sum_probs=116.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+. +||+..|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 445555666666666666666543 2445556666666666666666665553 55666666666655555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 011463 275 GCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+.-+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 5566666666554322 11112222233566666666666655543 334556666666666666666666666
Q ss_pred HHHHHCCCCCCc-ccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 355 DEMVLGGITPNR-LTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDE 432 (485)
Q Consensus 355 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 432 (485)
...... .|+. ..|+ .+-.+|.+. ...+|...+++..+.+.. +...|...+....+-|.+++|++.+.+
T Consensus 543 ~rcvtL--~Pd~~eaWn-------Nls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 543 HRCVTL--EPDNAEAWN-------NLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHhhc--CCCchhhhh-------hhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 665542 3432 2233 555555555 555566666665555433 445555555555556666666666655
Q ss_pred HHh
Q 011463 433 LVL 435 (485)
Q Consensus 433 ~~~ 435 (485)
+..
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-06 Score=74.34 Aligned_cols=188 Identities=10% Similarity=0.026 Sum_probs=128.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh---
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK--- 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 121 (485)
+..+..+..++..+...|++++|...++++....+.. ....+..+..++.+.|++++|+..++++.+.. |.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 3456678888888999999999999999988876531 12467778888999999999999999998764 21222
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHh
Q 011463 122 SYITVLAILVEE--------NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYT 193 (485)
Q Consensus 122 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (485)
++..+..++... |+.++|.+.++.+.+.. |+.......+..+... ... . ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~----~~~------~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYL----RNR------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHH----HHH------H--------HHH
Confidence 455555555554 67888888888888754 5433222211111110 000 0 011
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
...+...+.+.|++.+|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22566778889999999999998876532 223467888889999999999999988887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.8e-06 Score=80.82 Aligned_cols=248 Identities=15% Similarity=0.101 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 103 DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI-GIQP---CVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
.|.+ |+++.... |.+...|...|......++.++|.++.++++.. ++.- -...|..+++.-... |.-+...++
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-G~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-GTEESLKKV 1519 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHH
Confidence 3444 44444332 445667888888899999999999999988753 2211 123455565554444 777888899
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE 258 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 258 (485)
|+++.+.. -....|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+.-..
T Consensus 1520 FeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1520 FERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99988863 13456788899999999999999999999876 2346778888889999998889999999888765211
Q ss_pred -CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH--HhHH
Q 011463 259 -PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA--GLYG 335 (485)
Q Consensus 259 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 335 (485)
-......-.+..-.+.|+.+.+..+|+-.+...++ -...|+..++.-.+.|+.+.++.+|+++...++.|.. ..|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 12344555666667889999999999988887443 6678999999999999999999999999888766543 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011463 336 KIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..+..=-..|+-+.+..+-.++
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHH
Confidence 5555444556655544444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-07 Score=69.49 Aligned_cols=116 Identities=9% Similarity=-0.015 Sum_probs=89.6
Q ss_pred HHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 33 VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
.+|++++ ..++..+..+...+...|++++|...|+.+....+. +...+..+..++.+.|++++|+..|++..
T Consensus 14 ~~~~~al-------~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 14 DILKQLL-------SVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHH-------HcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666 233444566778888888999999888888888765 77888888888888899999999998888
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
..+ +.+...+..+..++...|++++|...|+...+.. |+...+.
T Consensus 86 ~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~ 129 (144)
T PRK15359 86 MLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWS 129 (144)
T ss_pred hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence 765 5577888888888888889999988888888754 5544443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-07 Score=73.56 Aligned_cols=119 Identities=8% Similarity=0.094 Sum_probs=82.7
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-HHcCC--HHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL-VEENQ--LKLA 139 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 139 (485)
.++.+++...++..++.++. +...|..+...|...|++++|...|++..+.+ +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56667777777777777665 77778888888888888888888888877764 44666666666653 55566 4788
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 140 FRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
.+++++..+.+ | +...+..+...+... |++++|...|+.+.+..
T Consensus 130 ~~~l~~al~~d--P~~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD--ANEVTALMLLASDAFMQ-ADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC--CCChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Confidence 88888887755 4 334444444455555 88888888888877763
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-06 Score=80.92 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 70 EDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEP---TPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
.+-|++.....|. +...|...|..+...++.++|.+++++.+.. ++.- -...|.++++.-..-|.-+...++|++
T Consensus 1444 aeDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1444 AEDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3445555555554 5678999999999999999999999998753 2111 134577788777778888899999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-
Q 011463 146 MREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP- 224 (485)
Q Consensus 146 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 224 (485)
+.+.. -....|..+...|.+. +.+++|.++++.|.+. +.-....|...+..+.++++-+.|..++.+..+.-.+.
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~-ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKS-EKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHh-hcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 98853 3345677777787777 9999999999999987 22477889999999999999999999999987752211
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC--hhhHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN--IVTYSTL 302 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 302 (485)
........+..-.+.|+.+.+..+|+...... +--...|+..+..-.++|+.+.+..+|+++...++.|. -..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 23334445566678899999999999998763 44677899999999999999999999999999877654 2455666
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011463 303 LNGLCKEGKLQEAVEILDRM 322 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~ 322 (485)
+..=-..|+-+.++.+=.++
T Consensus 1678 LeyEk~~Gde~~vE~VKarA 1697 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARA 1697 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHH
Confidence 65555566655555444333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.0001 Score=65.96 Aligned_cols=428 Identities=11% Similarity=0.133 Sum_probs=252.0
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
....++.+|++-+..+ -.+++++.++++. ..+|..+..|..-++.-....+++....+|.+++..- .+.+.|.
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~----~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLV----NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHh----ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 3445677778777766 9999999999999 5667778899999999999999999999999998874 3677787
Q ss_pred HHHHHHhcc-CChhh----HHHHHHHHH-hcCCCCC-HhhHHHHHHH---------HHHcCCHHHHHHHHHHHHHcCCC-
Q 011463 90 SICRGYGRV-HRPLD----AMRVFDKMK-EFGCEPT-PKSYITVLAI---------LVEENQLKLAFRFYRHMREIGIQ- 152 (485)
Q Consensus 90 ~l~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~- 152 (485)
..+.--.+. |+... ..+.|+-.. +.|+.+- -..|+..+.. +..+.+++...++|+++...-+.
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777544332 33332 233444433 3343332 2345555433 34455677788888888753211
Q ss_pred --------------CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHH---------------hHHHHHHHH
Q 011463 153 --------------PCVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSY---------------TYGTLINGL 201 (485)
Q Consensus 153 --------------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~---------------~~~~l~~~~ 201 (485)
.+..+-..++. .....+..|.++++++... |...... .|..+|.--
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~---e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIG---ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11111122221 1224566777777776542 3221111 133333221
Q ss_pred HHcC------CH--hHHHHHHHHHHH-CCCCCChhhH-H----HHHHHHHccCC-------HHHHHHHHHHHHhCCCCCC
Q 011463 202 CRLG------KI--YEAKELFKEMET-KACSPTVVTY-T----SLINGLCQSKS-------VEEAMRLFEEMRSKGVEPN 260 (485)
Q Consensus 202 ~~~~------~~--~~a~~~~~~~~~-~~~~~~~~~~-~----~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 260 (485)
...+ .. ....-++++... .+..|+.... . ..-+.+.+.|+ -+++..+++.....-..-+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 00 011112222111 1222222110 0 11112223333 4455666665554322223
Q ss_pred HhhHHHHHHHHHc---CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC-CHHhHHH
Q 011463 261 VFTYSSLMDGLCK---GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP-DAGLYGK 336 (485)
Q Consensus 261 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 336 (485)
..+|..+...--. -...+.....++++......--..+|..+++.-.+..-++.|..+|.++.+.+..+ +..+..+
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 3334333332111 12366677777777765433345578888888888889999999999999887666 6677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc--chhhHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV--DSLTYSSL 413 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~--~~~~~~~l 413 (485)
++.-|+ .++.+-|.++|+--++. -+|...|. ...+..+... +-..+..+|++....+..+ ....|..+
T Consensus 408 ~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv------~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 408 LMEYYC-SKDKETAFRIFELGLKK--FGDSPEYV------LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred HHHHHh-cCChhHHHHHHHHHHHh--cCCChHHH------HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 887665 67889999999987664 24444332 1344444444 6777899999999874443 35789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCc
Q 011463 414 ITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAVMTALWDRRK 457 (485)
Q Consensus 414 ~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~ 457 (485)
+.--..-|+...+.++-+++... ++ +....-..+++-|.-.+.
T Consensus 479 l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhccc
Confidence 99889999999999998888754 22 222333444555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.6e-07 Score=75.46 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=128.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE-- 85 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-- 85 (485)
..-.....+..+...|++++|+..|+.+.. ..|.++ .++..+..++...|++++|...++.+.+..+....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 333455667788899999999999999983 223333 56788899999999999999999999988764222
Q ss_pred HHHHHHHHHHhcc--------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011463 86 DIFLSICRGYGRV--------HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157 (485)
Q Consensus 86 ~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (485)
..+..+..++... |++++|.+.|+.+.... +.+...+..+...... .. ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----~~------~~~--------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----RN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----HH------HHH--------HH
Confidence 2455556666554 78899999999998763 2233333322221110 00 000 00
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhCCC--CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGC--TPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+...+.+. |++++|...++...+... +.....+..+..++...|++++|...++.+...
T Consensus 169 ~~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11333445666 999999999999887632 224678889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3e-06 Score=68.54 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=116.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.|... ..+...+...|+-+....+........++ +.......+....+.|++..|...|.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 344555 66667777778777777777776655443 66666677777888888888888888887654 6778888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
..+|.+.|+++.|..-|.+..+... -+...++.+.-.+.-. |+++.|..++......+.. +...-..+..+....|+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~-gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLR-GDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHc-CCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 8888888888888888888777532 2233444444445555 8888888888777765332 66677777777788888
Q ss_pred HhHHHHHHHHHH
Q 011463 207 IYEAKELFKEME 218 (485)
Q Consensus 207 ~~~a~~~~~~~~ 218 (485)
+..|.++...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 888877765543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-05 Score=62.26 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
....|.-+|++|-+. .+|++.+.+....++...|++++|..+++.++.+
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344444444444432 2444444444444444455555555555544444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-05 Score=64.38 Aligned_cols=251 Identities=15% Similarity=0.088 Sum_probs=127.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
++-+.-.|.+..++..-+... +.+.++..-..+.++|...|++.....-.. ... .|.......+......-
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~-----~~~~~~e~d~y~~raylAlg~~~~~~~eI~---~~~-~~~lqAvr~~a~~~~~e 85 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFS-----SSKTDVELDVYMYRAYLALGQYQIVISEIK---EGK-ATPLQAVRLLAEYLELE 85 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHcccccccccccc---ccc-CChHHHHHHHHHHhhCc
Confidence 444455667776666655544 112444445555666666666554333222 111 22233333333333333
Q ss_pred CChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
++.++-+. +.+.+.......+......-...|.+.+++++|++..+... ..+....+.- .+.+. .+++-|.+
T Consensus 86 ~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~Vq--I~lk~-~r~d~A~~ 158 (299)
T KOG3081|consen 86 SNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQ--ILLKM-HRFDLAEK 158 (299)
T ss_pred chhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHH--HHHHH-HHHHHHHH
Confidence 44333333 33333332222222333334455666777777776666521 1222222222 23344 56677777
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.++.|.+.. +..+.+.|..++.+ .+...+|.-+|++|.++ .+|+..+.+-...++...+++++|..+++...
T Consensus 159 ~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 159 ELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 777776642 44555555555543 24566677777777653 45666666666677777777777777777776
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChH-HHHHHHHHHHhC
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSS-QAMELLQMMISK 290 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~ 290 (485)
... .-++.+...++-+-...|... ...+.+.++...
T Consensus 235 ~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 235 DKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 654 224555555554444444443 333444444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-06 Score=79.13 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=153.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+|-...-..+...+.+.|-...|..++++. ..|..++.+|...|+..+|..+..+..++ +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 344444455667777788888888887754 34667777888888888888877777763 6777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
........-+++|+++.+..... .-..+....... ++++++.+.|+...+.+ +....+|..+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~-~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSN-KDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccc-hhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 77766666677777777654432 001111111223 78888888887777653 2256677777777888888
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
++.|.+.|....... +.+...||++-.+|.+.++-.+|...+.+..+.+ .-+...|-..+-...+.|.+++|++.+.+
T Consensus 535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 888888888776642 2356778888888888888888888888887766 44556666667777788888888888877
Q ss_pred HHhC
Q 011463 287 MISK 290 (485)
Q Consensus 287 ~~~~ 290 (485)
+...
T Consensus 613 ll~~ 616 (777)
T KOG1128|consen 613 LLDL 616 (777)
T ss_pred HHHh
Confidence 7653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00028 Score=67.18 Aligned_cols=434 Identities=13% Similarity=0.088 Sum_probs=239.6
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 101 (485)
....+++.+|+....++.+ ..|....+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|...|..
T Consensus 19 ~ld~~qfkkal~~~~kllk----k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK----KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 4567899999999999983 22333332222234467999999999999988777665 888999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--------
Q 011463 102 LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD-------- 173 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-------- 173 (485)
++|..+|++.... -|+......+..+|++.+++.+-.+.--++-+ .++-....+-.+++.+.......+
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 9999999999886 46777777788888888877665544444433 234455666666666654322222
Q ss_pred -HHHHHHHhhhhCC-CCCCHHhHHHHHHHHHHcCCHhHHHHHHHH-HHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 174 -AAFKIFREMPNRG-CTPDSYTYGTLINGLCRLGKIYEAKELFKE-METKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 174 -~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
-|.+.++.+.+.+ .--+..-...-...+...|++++|.+++.. ..+.-...+...-+.-+..+...+++.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 3455566666553 211222222334455678899999999943 3333333344445566778888899999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHH----------------HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hcCC
Q 011463 251 EMRSKGVEPNVFTYSSLMDGL----------------CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC---KEGK 311 (485)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 311 (485)
++...|.. | |......+ ...+..+...+..++....+ ....|-+-+.+.. .-|+
T Consensus 251 ~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 251 RLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCC
Confidence 99887532 2 22222211 11223333333333333331 1222333333333 4577
Q ss_pred HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccc--cchhhhHHHHHHHHhc----
Q 011463 312 LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTW--SLHIRIHNTVVQGLCK---- 385 (485)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---- 385 (485)
.+++...|-+- .|..| .+..=+..|...=..+.-..++...... .++...- ..-..++...+.....
T Consensus 324 ~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred hHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 77766554332 22122 2222222222222222333333332211 0111000 0000001111111111
Q ss_pred CChhHHHHHHHHHH---hCC------Cccchh---------hHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCC-Chh
Q 011463 386 TDPNRAFQVYLSMR---NRS------ISVDSL---------TYSSLITCFCKKGDIH---KSARIVDELVLDGCLP-DEG 443 (485)
Q Consensus 386 ~~~~~a~~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~p-~~~ 443 (485)
-+.+.-..++++.. +.| ..|+.. +.+.|++.|.+.++.. +|+-+++.-... .| +..
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~ 474 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQ 474 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHH
Confidence 13333333333322 111 122222 3456778888888765 344455544443 23 333
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchh
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVD 479 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (485)
+-..++..|.-.|-+..|.+.|+.+--+.+..+++.
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 334577888888988899988887766666655553
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-06 Score=69.54 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=131.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.....+...|+-+.+..+...+. ...+.|.......+...++.|++..|...++++....++ |...|+.+..+|.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~----~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~-d~~~~~~lgaald 145 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSA----IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT-DWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhh----ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCC-ChhhhhHHHHHHH
Confidence 34566777788888888887766 355667777888999999999999999999999988765 9999999999999
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.|+++.|..-|.+..+.. +.++...+.+.-.+.-.|+.+.|..++......+. -+...-..+....... |+++.|.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~-g~~~~A~ 222 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQ-GDFREAE 222 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhc-CChHHHH
Confidence 9999999999999998863 45677889999999999999999999999988652 2555556666666666 9999999
Q ss_pred HHHHhhhh
Q 011463 177 KIFREMPN 184 (485)
Q Consensus 177 ~~~~~~~~ 184 (485)
++-..-..
T Consensus 223 ~i~~~e~~ 230 (257)
T COG5010 223 DIAVQELL 230 (257)
T ss_pred hhcccccc
Confidence 88766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-05 Score=73.22 Aligned_cols=182 Identities=15% Similarity=0.094 Sum_probs=117.5
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
...|...|-+..+..+. -...|..|...|....+...|.+.|+...+.+ +.+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55566666666665443 23567788888887778888888888887764 34567778888888888888888888333
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 146 MREIGI-QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 146 ~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
.-+... ..-...|...--.+... ++...+..-|+...+..+. |...|..++.+|...|++..|.++|.+.... .|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea-~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEA-HNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCc-cchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 322110 00111222222223333 7788888888887776543 7778888888888888888888888887664 33
Q ss_pred ChhhHHHH--HHHHHccCCHHHHHHHHHHHHh
Q 011463 225 TVVTYTSL--INGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 225 ~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~ 254 (485)
+. .|... ...-+..|.+.+|...+.....
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22 22222 2233456788888888777654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.0001 Score=70.89 Aligned_cols=294 Identities=15% Similarity=0.216 Sum_probs=165.5
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+...-++......+-+++|+.+|.+.. .+..+...++. .-+..++|.+.-+++. .+.+|..+.
T Consensus 1049 yDa~~ia~iai~~~LyEEAF~ifkkf~--------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1049 YDAPDIAEIAIENQLYEEAFAIFKKFD--------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHhc--------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHH
Confidence 344456677778888888888887654 23334444332 2345555555555442 344566666
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
.+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+.+...++..-.|... ..++-+|++. ++.
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt-~rl 1182 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT-NRL 1182 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh-chH
Confidence 6666666666666555332 255566666666666666666666665555544333332 3344445554 554
Q ss_pred HHHHHHHHhhhhCCCCCCHH--------------------------hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh
Q 011463 173 DAAFKIFREMPNRGCTPDSY--------------------------TYGTLINGLCRLGKIYEAKELFKEMETKACSPTV 226 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 226 (485)
.+.++++. -|+.. -|..|...+...|++..|.+.-++. .+.
T Consensus 1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 44433321 12222 3444555555555555555443332 255
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 227 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
.+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+... ......|+-|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 5676666666665544332 34434444455567788888999999999998888765442 22455677777666
Q ss_pred HhcCCHHHHHHHHHHHhHC-CCC------CCHHhHHHHHHHHHhcCCHHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQ-GLK------PDAGLYGKIISCFCDIGKYQEAAN 352 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~ 352 (485)
.+- ++++..+.++-...+ +++ -....|+.+.-.|.+-..++.|.-
T Consensus 1324 sky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred Hhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 654 456665555544332 111 123467777777777777776643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=78.21 Aligned_cols=131 Identities=9% Similarity=0.093 Sum_probs=87.0
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--------
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-------- 82 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------- 82 (485)
..-....|+..+...+++++|+++.+... ...|.....|..++..+.+.++++.+.-+ .+...-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l----~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHL----KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 33445567788888899999999988776 33344455555555577777776666555 33222111
Q ss_pred ----------CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 83 ----------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 83 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
-+..++..+..+|.+.|+.++|..+|+++.+.+ +-++.+.|.+...|+.. +.++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 012456666777777788888888888887776 55677777777777777 788888777777653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-05 Score=76.36 Aligned_cols=171 Identities=10% Similarity=0.010 Sum_probs=111.1
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.+...+..++..+...+++++|.++.+...+..+. ....|..+...+...++..++..+ .+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l-------------- 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLI-------------- 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhh--------------
Confidence 445778999999999999999999999988887655 445555555577777776655554 222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
.......++..+..++..+...+ -+...+..+..+|-+. |+.+++..+++++.+..+. ++.+.|.+...|... +
T Consensus 91 -~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 -DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKL-NENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 22223333333333333444422 2333555555555555 8888888888888887633 777888888888888 8
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+++|.+++.+.... +...+++..+..+|..+...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88888887776553 44445566666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.6e-06 Score=79.34 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=112.2
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 44 NGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 44 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
...+.++..+..|..+..+.|++++|..+++.+.+..|. +...+..++.++.+.+++++|+..+++....+ +.+....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 355667888888999999999999999999999988766 77788888899999999999999999998875 4456777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
..+..++.+.|++++|..+|+++...+ +-+...+..+...+-.. |+.++|...|+...+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~-G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRR-GALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 888888889999999999999998844 22355666666666666 9999999999888775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=67.05 Aligned_cols=108 Identities=7% Similarity=-0.054 Sum_probs=91.8
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+......+...|++++|+..|+.++ .-.|.+...|..+..++...|++++|...|+.+...++. +...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al----~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLV----MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 3346778899999999999999999 344678899999999999999999999999999998775 88899999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...|++++|+..|+...+.. +.++..+.....
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~ 134 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS-YADASWSEIRQN 134 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 999999999999999998864 334555544433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-08 Score=52.98 Aligned_cols=32 Identities=31% Similarity=0.683 Sum_probs=21.3
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 402 SISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
|+.||..+|+.++.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-05 Score=64.95 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=79.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--HHHH
Q 011463 239 SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGK--LQEA 315 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 315 (485)
.++.+++...++...+.+ +.+...|..+...|...|++++|...++++.+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666553 446667777777777777777777777777776433 566666666653 45555 4777
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..++++..+.+ +.+...+..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777664 3456667777777777777777777777776643
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=65.78 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+......++..+...|++++|.+.++.+...++. +...+..+...+.+.|++++|...+++....+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 334556667777788888888888888888776654 67777788888888888888888888877664 4566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
..++...|++++|...++...+.. |+...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 123 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC--GENPEYSE 123 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence 778888888888888888877744 55544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.9e-05 Score=74.19 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
+...+..|..+....|++++|..+++...+.. |.+......+...+.+.+++++|...+++..... |+.........
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHH
Confidence 56677777777777777778877777777753 3345666777777777777777777777777754 66555555555
Q ss_pred HHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 164 ALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
.+....|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444477778877777777643 225667777777777777777777777777654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-07 Score=50.93 Aligned_cols=31 Identities=58% Similarity=1.073 Sum_probs=13.9
Q ss_pred CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00021 Score=57.77 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
..+..++.+....|+.+.|...++.+... +|-+...-..-.-.+-..|++++|.++|+.+.+.. +.|..++..-+...
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34555666666777777777777777665 23333333333333455677788888888777765 33344444434333
Q ss_pred HhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC---CH
Q 011463 166 CKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK---SV 242 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~ 242 (485)
-.. |.--+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.. |.++..+..+...+...| +.
T Consensus 131 ka~-GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQ-GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHc-CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 333 6666777766666654 34477888888888888888888888888876642 234444455555444333 45
Q ss_pred HHHHHHHHHHHhCC
Q 011463 243 EEAMRLFEEMRSKG 256 (485)
Q Consensus 243 ~~a~~~~~~~~~~~ 256 (485)
..+.++|.+..+..
T Consensus 208 ~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 208 ELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777777653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-05 Score=70.37 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=56.9
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..|++++|+..++.++ ...|.|+..+......+.+.++.++|.+.++++....|. .......+.+++.+.|++.+
T Consensus 318 ~~~~~d~A~~~l~~L~----~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLI----AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 3455555555555544 233444444445555555555555555555555554333 23444445555555555555
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (485)
|+.++++..... +.++..|..|.++|...|+..++....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555554432 344555555555555555554444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=59.95 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=67.6
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.++.+....+. +......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44555555443 44555566666667777777777777776654 4456666667777777777777777777766644
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+.+...+..+...+... |+++.|...++...+.
T Consensus 82 p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLAL-GEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 22334444444445554 7777777777666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0025 Score=61.11 Aligned_cols=425 Identities=13% Similarity=0.114 Sum_probs=235.0
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.+.|+.++|..+++... ...+.|..+...+-..|.+.|+.++|..+|+++.... |+.+....+..+|.+.++
T Consensus 52 sl~r~gk~~ea~~~Le~~~----~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALY----GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHHHhcCchhHHHHHhhhc----cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHH
Confidence 4578999999998888776 2334488899999999999999999999999999875 558888888889999888
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC-C---------HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN-Q---------LKLAFRFYRHMREIG-IQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~ 169 (485)
+.+-.+.--++.+. ++-++..+-.+++.....- . ..-|.+.++.+.+.+ ---+..-....+..+-..
T Consensus 126 yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~- 203 (932)
T KOG2053|consen 126 YKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ- 203 (932)
T ss_pred HHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc-
Confidence 76655544444332 3445666666666655422 1 234555666666543 111222222233333344
Q ss_pred CChHHHHHHHH-hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHH------------
Q 011463 170 GTMDAAFKIFR-EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGL------------ 236 (485)
Q Consensus 170 ~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~------------ 236 (485)
|.+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...+.. | |...+..+
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a 279 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPA 279 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccc
Confidence 89999999993 3333333335555566778888999999999999888887543 2 32222211
Q ss_pred ----HccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 237 ----CQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGL---CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 237 ----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
...+..+...+...+..... ....|-+-+.++ ..-|+.+++...|-+-.. +-..+..=+..|...
T Consensus 280 ~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~ 351 (932)
T KOG2053|consen 280 EAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGH 351 (932)
T ss_pred hhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhcc
Confidence 11222333333333333221 111222333333 345777776655443322 112233333333333
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHH-------hHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCccc
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAG-------LYGKIISCFCDIGK-----YQEAANFLDEMV---LG------GITPNRLT 368 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~~~a~~~~~~~~---~~------~~~~~~~~ 368 (485)
=..+.-..++....... ++.. .+...+..-.-.|. .+.-..++.+.. +. ++-|....
T Consensus 352 l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~ 429 (932)
T KOG2053|consen 352 LNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYS 429 (932)
T ss_pred CCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccc
Confidence 33444444444443321 1111 12222222222332 222333332221 11 23344444
Q ss_pred cc--chhhhHHHHHHHHhcC-C---hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011463 369 WS--LHIRIHNTVVQGLCKT-D---PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDE 442 (485)
Q Consensus 369 ~~--~~~~~~~~l~~~~~~~-~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 442 (485)
+. ....+-+.++..+.+. + .-+|+-+++.....++. |..+--.+++.|+-.|-+..|.+.|+.+.-..+.-|.
T Consensus 430 ~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 430 FGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 43 1233344556666665 3 34455566666555443 5566667889999999999999999988655555444
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 443 GTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 443 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
.-+. +...+...|++..+...++..+
T Consensus 509 lgh~-~~~~~~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 509 LGHL-IFRRAETSGRSSFASNTFNEHL 534 (932)
T ss_pred chHH-HHHHHHhcccchhHHHHHHHHH
Confidence 3333 2333445566665555554433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00062 Score=60.59 Aligned_cols=111 Identities=20% Similarity=0.170 Sum_probs=50.2
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a 175 (485)
..|.+++|+..++.+... .|.|+..+......+.+.++.++|.+.++++.... |+ ......+..++.+. |++.+|
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~-g~~~ea 393 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKG-GKPQEA 393 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhc-CChHHH
Confidence 345555555555554443 12333344444445555555555555555555432 33 22222233333343 555555
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
..+++...... +-|+..|..|..+|...|+..++..
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH
Confidence 55555544432 2244455555555555555444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00017 Score=58.27 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=146.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCC-CCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 23 RAEKDVNKALVIFDSATAEYANG-FRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
....+.++.+++++.+......+ ..++. ..|..++-+....|+.+.|...++.+...-+. +..+-..-...+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 34678889999998888655555 45554 35667777778899999999999998877644 44444444445667799
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|... |++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~-~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSE-GDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhH-hHHHHHHHHHH
Confidence 999999999999876 566777777777777788888888888777764 457888999999999888 99999999999
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcC---CHhHHHHHHHHHHHC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETK 220 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 220 (485)
++.-..+ .++..+..+...+.-.| +.+.+.+.|.+..+.
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9887642 26666677776665544 567788888888875
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-05 Score=60.55 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=67.4
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--HHHHHHHHHHhcc
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHD---NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE--DIFLSICRGYGRV 98 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 98 (485)
..+++..+...++.+.. ..+.+ ......+...+...|++++|...|+.+....+.++. .....+...+...
T Consensus 23 ~~~~~~~~~~~~~~l~~----~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK----DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 36667777666766662 22223 223344456666677777777777777665533321 2344455666667
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH 145 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 145 (485)
|++++|+..++..... ......+.....++.+.|+.++|...|+.
T Consensus 99 ~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 99 GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776554332 23344555666667777777777776664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=70.80 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=72.4
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
....++..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++.+..+.. +.+..........+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444555555666666666666666653 22 33345555555666666666666665542 334555555556666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCChHHHHHHHHhhhh
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCV-ASLNVLIKALCKNSGTMDAAFKIFREMPN 184 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 184 (485)
..++++.|+++.+++.... |+. .+|..+...|... |+++.|+-.++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~-~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS--PSEFETWYQLAECYIQL-GDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhc-CCHHHHHHHHhcCcC
Confidence 6666666666666666643 433 3566666666665 666666666666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.705 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPD 441 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 441 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688999999999999999999999999888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.5e-05 Score=66.36 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=92.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
...++..+...++++.|..+++++.+.. |+ ....+++.+...++..+|.+++.+.+.... .+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3455666667788888888888888763 44 344567777777788888888888876533 356666666677888
Q ss_pred cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 309 EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
.++++.|..+.+++.+.. |-+..+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888763 4455688888888888888888888887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00014 Score=56.04 Aligned_cols=125 Identities=17% Similarity=0.196 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPN---VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI--VTYSTLL 303 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 303 (485)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......+.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344444 3566777777777776652 212 122223445666777777777777777776422221 2333456
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..+...|++++|+..++..... ......+......+...|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777654332 234455666677777777777777777653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.4e-05 Score=55.82 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRG 94 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 94 (485)
..+..+...|++++|.+.|+.+... ..+.+.....+..++.++.+.|+++.|.+.++.+....+.. ...++..+..+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3445555566666666666666521 00101113344555566666666666666666665543321 13445555555
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
+.+.|++++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 56666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-06 Score=45.62 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLDGCLP 440 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 440 (485)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-05 Score=63.87 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+.+.++|.+|+..|.+++...+. |...|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34444444444444444444333 33344444444444444444444444444432 12234444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 140 FRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
.+.|++.++ +.|+..+|..-+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 444444444 23444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-05 Score=68.09 Aligned_cols=92 Identities=9% Similarity=0.044 Sum_probs=67.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+...|++++|+..|++++ ...+.+...|..+..+|...|++++|+..+++++...+. +...|..+..+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al----~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI----DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 455667778888888888777 233556677777777777888888888888877777654 566777777777777
Q ss_pred CChhhHHHHHHHHHhcC
Q 011463 99 HRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~ 115 (485)
|++++|+..|++..+.+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88888888887777653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5e-05 Score=57.29 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=83.4
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+......+...+...|++++|..+|+.+...++. +..-|..|..++-..|++++|+..|......+ +.++..+..+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455666677778899999999999999888766 77788888888989999999999999988876 467888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 011463 129 ILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00011 Score=65.99 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=88.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
..+..+...|++++|++.|++++...+. +...+..+..+|.+.|++++|+..++++...+ +.+...|..+..+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677899999999999999998776 78888899999999999999999999998875 456778888999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
++++|...|++.++.. |+.......+..+
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 9999999999998854 6666555555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.8e-05 Score=55.99 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
.+..-.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|........ -+...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3445555666667788888888888877654 34566677777777778888888888888777652 344445555555
Q ss_pred HHhcCCChHHHHHHHHhhhhC
Q 011463 165 LCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+... |+.+.|.+.|+.....
T Consensus 113 ~L~l-G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLAC-DNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHc-CCHHHHHHHHHHHHHH
Confidence 5565 8888888888777765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.5e-05 Score=52.77 Aligned_cols=88 Identities=11% Similarity=0.170 Sum_probs=35.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+...|++++|+..++.+. ...+.+...+..+...+...|++++|.+.++......+. +...+..+...+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKAL----ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 334444444444444444444 111222333444444444444444444444444433322 223333344444444
Q ss_pred CChhhHHHHHHHH
Q 011463 99 HRPLDAMRVFDKM 111 (485)
Q Consensus 99 ~~~~~a~~~~~~~ 111 (485)
|+++.|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 4444444444433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0024 Score=55.67 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred HcCCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH---hHHHHHHHHHhcC
Q 011463 272 CKGGCSSQAMELLQMMISKR---HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG---LYGKIISCFCDIG 345 (485)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~ 345 (485)
.+.|.+..|.+.|...+... ..++...|.....+..+.|+.++|+.--+..... |.. .+..-..++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555432 2333444444445555566666666555555432 222 2222233455555
Q ss_pred CHHHHHHHHHHHHH
Q 011463 346 KYQEAANFLDEMVL 359 (485)
Q Consensus 346 ~~~~a~~~~~~~~~ 359 (485)
+|++|.+-+++..+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.5e-05 Score=53.48 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
++..++..+...|++++|...++.+.+..+. +...+..+...+...|++++|.+.++...... +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3566788889999999999999999887654 55778888999999999999999999988764 445578888999999
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 011463 132 EENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~ 150 (485)
..|+++.|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999999887643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00025 Score=63.70 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=90.5
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI--GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
+.+.+......++..+....+.+.+..++.+.+.. ....-..|.+.++..|... |..+.++.+++.=...|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~-~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLEL-GAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhc-CCHHHHHHHHhChhhcccCCChh
Confidence 34556667777777777777788888888877764 2222334556888888887 88888888888888888888888
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 239 (485)
+++.||..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877666555666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=44.20 Aligned_cols=33 Identities=55% Similarity=0.942 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (485)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00025 Score=52.55 Aligned_cols=100 Identities=11% Similarity=0.022 Sum_probs=73.2
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCC--CCHhhHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE--PTPKSYITV 126 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 126 (485)
.++..++..+.+.|++++|.+.|+.+....+.. ....+..+..++.+.|+++.|...|+.+...... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777888888888888888887765431 1346666788888888888888888888764311 124567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 778888888888888888888764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0021 Score=54.12 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHH---HHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDI---FLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+......+...|++++|.+.|+.+....+.. ... ...++.++.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334455556666666666666666654432 221 133445566666666666666666654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.3e-06 Score=55.97 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHhhhhhcCCC-CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 25 EKDVNKALVIFDSATAEYANGF-RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
+|++++|+.+|+++... .. .++...+..++.++.+.|++++|.++++. .+.++. +......+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~---~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL---DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHH---HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777732 11 11344445566777777777777777766 322222 23444445666777777777
Q ss_pred HHHHHHH
Q 011463 104 AMRVFDK 110 (485)
Q Consensus 104 a~~~~~~ 110 (485)
|++.|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7776654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.011 Score=52.27 Aligned_cols=130 Identities=6% Similarity=0.014 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGG-ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYS 411 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 411 (485)
+|...+....+..-.+.|..+|-+..+.+ +.++...++ +++..++..++.-|..+|+.-...-++ +...-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~-------A~~E~~~~~d~~ta~~ifelGl~~f~d-~~~y~~ 470 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYC-------AFIEYYATGDRATAYNIFELGLLKFPD-STLYKE 470 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeH-------HHHHHHhcCCcchHHHHHHHHHHhCCC-chHHHH
Confidence 45556666667778889999999998877 455655555 999999888999999999987765333 334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPD--EGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
-.+.-+..-|+-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++.+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 5666777889999999999976654 2233 457777777767788887777666666553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0082 Score=50.60 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLD--GCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
.+.+-|.+.|.+..|+.-++.+++. +.+........+..+|.+.|..++|.++......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 5667789999999999999999986 3334455566778899999999999988766544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=2e-05 Score=43.07 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=54.23 Aligned_cols=81 Identities=9% Similarity=0.143 Sum_probs=45.5
Q ss_pred cCCcchHHHHHHHHhhcCCC-CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
.|+++.|+.+++++....+. ++...+..+..++.+.|++++|+.++++ ...+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46666777777776666542 1334444566666777777777777766 2221 1223334444666666777777766
Q ss_pred HHHH
Q 011463 142 FYRH 145 (485)
Q Consensus 142 ~~~~ 145 (485)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0026 Score=55.34 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=43.4
Q ss_pred CChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----h-hhHHHHHHHHHc
Q 011463 170 GTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-----V-VTYTSLINGLCQ 238 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~ll~~~~~ 238 (485)
|+++.|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|++........+ . ..+...+-++..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 5666666666665442 100 0123455566667777777777777777655422211 1 112223334555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011463 239 SKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~ 255 (485)
.|++..|...+++....
T Consensus 209 ~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHGTT
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 66666777776666544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00025 Score=63.73 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=63.5
Q ss_pred CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011463 189 PDSYTYGTLINGLCRLGKIYEAKELFKEMETK--ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266 (485)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (485)
.+......++..+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555555555555543 1111223344555666666666666666555555566666666666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 267 LMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 267 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
+|..+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 666666666666666555555554444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-05 Score=48.85 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=41.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
++..+...|++++|+..|+.++ ...|.++..+..+..++...|++++|...|+++.+..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l----~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQAL----KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHH----CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4556677777777777777777 33355667777777777777777777777777766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.8e-05 Score=48.62 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-cHHHHHHHHHHHHHcC
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR-KMRQAAELLLLELMNK 472 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 472 (485)
+...|..+...+...|++++|+..|++.++.+ +.+...|..+..++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999873 445667888999999999 7999999999999864
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00036 Score=58.07 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=66.3
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCCh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTM 172 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~ 172 (485)
-..+.+++.+|+..|.+.++.. |-|++.|..-..+|.+.|.++.|++-.+..+... |. ...|..+-.++... |++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~-gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLAL-GKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHcc-CcH
Confidence 3456777778888787777754 4456667777777777887777777777777643 43 34666666666666 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLI 198 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 198 (485)
++|.+.|++.++. .|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHH
Confidence 7777777777765 44444444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.5e-05 Score=41.60 Aligned_cols=29 Identities=38% Similarity=0.753 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0003 Score=60.77 Aligned_cols=132 Identities=11% Similarity=0.152 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
+|..++....+.+..+.|..+|.+..+.+ ..+|. +-+..+.+..++..+.+.|.++|+...+.-.. +...|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~----~~~~~--vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK----RCTYH--VYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CS-TH--HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC----CCCHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 45666666666666777777777776321 11121 11222334333344666677777776654222 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDE---GTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.++.+...|+.+.|..+|++.+.. +.++. ..|..++..=.+.|+.+.+.++.+++.+.-
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777765 22222 367777776667777777777777776653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.6e-05 Score=47.72 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+...+...|++++|++.|+++++.. +-+...+..+..++.+.|++++|..+++++++..+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567888999999999999999873 3356677788888999999999999999998876543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0015 Score=52.11 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=69.2
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
....+..++..+...|++++|...|+++.+..+.+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677888888899999999999999887654432 3678888889999999999999999988753 3356667777
Q ss_pred HHHHHHcCCHHHHH
Q 011463 127 LAILVEENQLKLAF 140 (485)
Q Consensus 127 ~~~~~~~~~~~~a~ 140 (485)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00057 Score=47.81 Aligned_cols=76 Identities=17% Similarity=0.395 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC-------ChHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNSG-------TMDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
.|..+...+++.....+|+.+++.|+ -|+..+|+.++...++..- ..-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 5666666666666554311 112334444445444455555555554
Q ss_pred HHHH
Q 011463 198 INGL 201 (485)
Q Consensus 198 ~~~~ 201 (485)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00077 Score=53.70 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=71.5
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCC-CC-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGF-RH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
.+..++..+...|++++|+..|++++. ... ++ ....+..++..+.+.|++++|...++++....+. +...+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALK---LEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---HhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455667788899999999999999983 221 22 2467889999999999999999999999998665 56777788
Q ss_pred HHHHhccCChhhHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~ 109 (485)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 888888887655544333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0019 Score=54.15 Aligned_cols=101 Identities=9% Similarity=0.062 Sum_probs=52.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC---ChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH---RPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
|.|...|..|..+|...|+++.|...|.+..+..++ ++..+..+..++.... ...++..+|+++...+ +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 445555555555555555555555555555555443 4555544444433221 2334555555555543 3344445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
..+...+...|++.+|...++.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55555555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0017 Score=47.39 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=54.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSIC 92 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 92 (485)
.....+-..|+.++|+.+|+++. ..+.... ...+-.+...+...|++++|..+++......+.. +......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al---~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRAL---AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 34555666777777777777777 3443332 3355566667777777777777777766654321 112222333
Q ss_pred HHHhccCChhhHHHHHHHHHh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~ 113 (485)
.++...|+.++|+..+-....
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 455566777777766655543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0016 Score=56.61 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHh----CCCCCC--HhhHHHHHHHHHcC-CChHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHh
Q 011463 241 SVEEAMRLFEEMRS----KGVEPN--VFTYSSLMDGLCKG-GCSSQAMELLQMMISK----RHR-PNIVTYSTLLNGLCK 308 (485)
Q Consensus 241 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~ 308 (485)
++++|...+++... .| .++ ...+..+...|... |++++|.+.|+++.+. +.. .-..++..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 66666665555442 22 111 23455666677777 8999999999987653 211 113456677788999
Q ss_pred cCCHHHHHHHHHHHhHCCCCCC-----H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 309 EGKLQEAVEILDRMKLQGLKPD-----A-GLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.|++++|..+|++........+ . ..+...+-++...|++..|...+++....
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999876532221 1 12334455777889999999999998764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00072 Score=53.69 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhH
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 104 (485)
++..+...+..+.. ..+.......|..++..+...|++++|...|+.+....+.+ ...++..+...+...|++++|
T Consensus 14 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 14 TFTIVADILLRILP--TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccchhhhhHhcc--CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555531 11222234556777777777888888888888877654332 224677777778888888888
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHH-------HcCCHHHHHHHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILV-------EENQLKLAFRFYR 144 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 144 (485)
+..+++..... +....++..+...+. ..|+++.|...++
T Consensus 92 ~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 92 LEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 88888777642 333445555555555 4555554443333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0026 Score=48.98 Aligned_cols=159 Identities=10% Similarity=0.082 Sum_probs=114.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...+.....+.=|+++..+-..+.. ..-|++.--..+..++.+.|+..+|...|++...--...+......+.++
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~-----~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEEL-----AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHH-----hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 3455556666667766655554444 23456666677889999999999999999999876666688888889999
Q ss_pred HhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
....+++..|...++.+.+... ..++.....+.+.+...|....|...|+.....- |+...-......+.++ |+.+
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~q-gr~~ 210 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQ-GRLR 210 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHh-cchh
Confidence 9999999999999999877531 1245567778889999999999999999998854 5544433333444555 7666
Q ss_pred HHHHHHHh
Q 011463 174 AAFKIFRE 181 (485)
Q Consensus 174 ~a~~~~~~ 181 (485)
++..-+..
T Consensus 211 ea~aq~~~ 218 (251)
T COG4700 211 EANAQYVA 218 (251)
T ss_pred HHHHHHHH
Confidence 65544333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5e-05 Score=49.64 Aligned_cols=53 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
..|++++|+++|+.+.. ..|.+...+..++.+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ----RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHH----HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45666666666666652 224455555566666666666666666666665553
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0021 Score=46.85 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC----HhhHHHHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT----PKSYITVL 127 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~ 127 (485)
.....++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.+++...... |+ ......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3445666777888888888888877765532 3455666677777788888888887776542 22 22222333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011463 128 AILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKAL 165 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 165 (485)
.++...|+.++|.+.+-.... ++...|..-+..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 455667777777777765554 2333444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00058 Score=54.20 Aligned_cols=92 Identities=10% Similarity=-0.106 Sum_probs=68.7
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCC-C-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFR-H-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+..++..+...|++++|+..|+.++. .... + ...++..+...+...|++++|.+.++.+....+. ....+..+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~---l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMR---LEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---ccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 34566778889999999999999983 2211 1 2457899999999999999999999999987654 456677777
Q ss_pred HHHh-------ccCChhhHHHHHHH
Q 011463 93 RGYG-------RVHRPLDAMRVFDK 110 (485)
Q Consensus 93 ~~~~-------~~~~~~~a~~~~~~ 110 (485)
..+. ..|+++.|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 7776 66676655544443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.029 Score=49.94 Aligned_cols=434 Identities=13% Similarity=0.127 Sum_probs=235.3
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCC-CCCHH-hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH--HHh
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGF-RHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR--GYG 96 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 96 (485)
.+.+++++++|.++|.++..+...+. --..+ .-+.++.+|. ..+.+.....+....+..+. ..|..+.. .+-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~---s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGK---SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCC---chHHHHHHHHHHH
Confidence 46789999999999999985321110 00112 2345556664 45566666666666554332 22333333 244
Q ss_pred ccCChhhHHHHHHHHHhc--CCCC------------CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEF--GCEP------------TPKSYITVLAILVEENQLKLAFRFYRHMREIGI----QPCVASL 158 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 158 (485)
+.+.+.+|++.+....+. +..+ +-..=+..+.++...|++.++..+++++...=+ ..+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988877664 2111 111124566778899999999999998876433 3788888
Q ss_pred HHHHHHHHhc-------CCC-------hHHHHHHHHhhhhC------CCCCCHHhHHHHHHHHHHc--CCHhHHHHHHHH
Q 011463 159 NVLIKALCKN-------SGT-------MDAAFKIFREMPNR------GCTPDSYTYGTLINGLCRL--GKIYEAKELFKE 216 (485)
Q Consensus 159 ~~ll~~~~~~-------~~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~ 216 (485)
+.++-.+.+. ... ++.+.-+.+++... .+.|.......++....-. .+..--.++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8866555543 011 12222222333221 1223333333333322211 112222334444
Q ss_pred HHHCCCCCChhh-HHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 217 METKACSPTVVT-YTSLINGLCQSKSVEEAMRLFEEMRSKGVE----PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 217 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
....-+.|+... ...+...+.. +.+++..+.+.+....+. --..+|..++....+.++...|...+..+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 444444555332 3334444443 556666665555433211 124578888899999999999999988876653
Q ss_pred CCCChhhHHH-------HHHHHHh----cCCHHHHHHHHHHHhHCCCCCCHH-hHHHH---HHHHHhcCC-HHHHHHHHH
Q 011463 292 HRPNIVTYST-------LLNGLCK----EGKLQEAVEILDRMKLQGLKPDAG-LYGKI---ISCFCDIGK-YQEAANFLD 355 (485)
Q Consensus 292 ~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l---~~~~~~~~~-~~~a~~~~~ 355 (485)
+ +...-.. +-+..+. .-+...=+.+|+......+ |.. .-..+ ..-+-+.|. -++|+.+++
T Consensus 329 p--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 329 P--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred C--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2 2222111 1122221 1122333455555554432 221 12222 233445565 788999999
Q ss_pred HHHHCCCCCCcccccchhhhHHHHHHHHhcC----ChhHHHHHHHHHHhCCCccc----hhhHHHHHHH--HHhcCCHHH
Q 011463 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKT----DPNRAFQVYLSMRNRSISVD----SLTYSSLITC--FCKKGDIHK 425 (485)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~ 425 (485)
.+.+- .|.+..-. -.+.-.+-..|... .+.+-+.+-.-+.+.|+.|- ...-|.|.+| +...|++.+
T Consensus 405 ~il~f--t~yD~ec~--n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 405 LILQF--TNYDIECE--NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHh--ccccHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 88763 33222111 11111122222222 33333444444455666553 3344555544 356799998
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 426 SARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.-.-.-+.+ +.|+..++..++-++....++++|..++.+..-
T Consensus 481 c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 481 CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 8776555554 589999999999889999999999999876544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=47.88 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=36.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|++++|++.|+.+....|. +..++..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567777777777777776655 6666667777777777777777777777665
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00088 Score=46.91 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=47.9
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEEN--------QLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554422 2345667777777777888888888887
Q ss_pred HHHHh
Q 011463 163 KALCK 167 (485)
Q Consensus 163 ~~~~~ 167 (485)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0012 Score=57.01 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=72.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG-LCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL 306 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (485)
+|..+++...+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666666666666666432 2233334333333 22244555577777766655 344566666666666
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDA---GLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777766654 22222 3666666666667777777777666665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.04 Score=50.95 Aligned_cols=381 Identities=12% Similarity=0.068 Sum_probs=216.1
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh-ccCCh
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG-RVHRP 101 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 101 (485)
....+.+.+..++..++ ...|--..-|......-.+.|..+.+.++|++....- +.+...|...+..+. ..|+.
T Consensus 56 ~~~~~~~~~r~~y~~fL----~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 56 DSIEDVDALREVYDIFL----SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred CchhHHHHHHHHHHHHH----hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCH
Confidence 33445567777788777 3334444567777777788999999999999988754 357788877776554 45788
Q ss_pred hhHHHHHHHHHhc-CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c-----CCC
Q 011463 102 LDAMRVFDKMKEF-GCE-PTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---N-----SGT 171 (485)
Q Consensus 102 ~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~-----~~~ 171 (485)
+.....|+..... |.. .+...|...+..-..++++.....+|++.++.- ...++.....+.+ . ...
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcC
Confidence 8888888888764 321 245567888888788899999999999988732 1112211111111 0 022
Q ss_pred hHHHHHHHHhhhh--------------------CCCCCC--HHhHHHHHHHH-------HHcCCHhHHHHHHHHHHHC--
Q 011463 172 MDAAFKIFREMPN--------------------RGCTPD--SYTYGTLINGL-------CRLGKIYEAKELFKEMETK-- 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~--------------------~~~~~~--~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~-- 220 (485)
.+++.++-..... .+.+.+ ....+.+...+ ............|+.-...
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY 286 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY 286 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence 3333322222221 000000 01111111111 1111122222223322222
Q ss_pred -CC----CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 011463 221 -AC----SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295 (485)
Q Consensus 221 -~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (485)
.+ +++..+|...+.--...|+++.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+-..+..
T Consensus 287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 11 123456777777788889999999999887632 111223344444444455888888888888776544433
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHH-hHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCcccccc
Q 011463 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAG-LYGKIISCFCDIGKYQEAA---NFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~ 371 (485)
+.+--.-....-..|++..|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++.... ++..+...
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-----~~~~~~~i 438 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-----EGKENNGI 438 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-----ccccCcch
Confidence 3322222233455789999999999998863 4332 2222334456778887777 3333332 22222222
Q ss_pred hhhhHHHHHHH--HhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC
Q 011463 372 HIRIHNTVVQG--LCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421 (485)
Q Consensus 372 ~~~~~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (485)
....+.-.... .++.+.+.|..++..+.+.-+. +...|..+++.+...+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 22222122222 2223889999999999887544 7778888888776655
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0031 Score=59.40 Aligned_cols=70 Identities=11% Similarity=-0.055 Sum_probs=58.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
++..|..+.-.....|++++|...++++.+. .|+...|..+..++...|++++|.+.+++++..++..++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 5567777776677789999999999999987 578888888888999999999999999999988776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00037 Score=60.42 Aligned_cols=265 Identities=15% Similarity=0.074 Sum_probs=163.4
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHH------HhhcCCCCCHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDR------VNKEKCDITEDIF 88 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~------~~~~~~~~~~~~~ 88 (485)
..-+++.|+.+..+.+|+.++ +.|. .| ..+|..+..+|.-.+++++|+++... .+.... -...+.
T Consensus 24 GERLck~gdcraGv~ff~aA~---qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl-GEAKss 98 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAAL---QVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL-GEAKSS 98 (639)
T ss_pred HHHHHhccchhhhHHHHHHHH---Hhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh-cccccc
Confidence 456889999999999999999 4453 33 34678888899999999999887532 111110 012233
Q ss_pred HHHHHHHhccCChhhHHHHHHHHH----hcCC-CCCHhhHHHHHHHHHHcCC--------------------HHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMK----EFGC-EPTPKSYITVLAILVEENQ--------------------LKLAFRFY 143 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 143 (485)
..|...+--.|.+++|+..-.+-+ +.|- .....++-.+...|...|+ ++.|.++|
T Consensus 99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy 178 (639)
T KOG1130|consen 99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY 178 (639)
T ss_pred ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence 345555556678888766443322 2221 1123445556666665543 23344444
Q ss_pred HHHHH----cCCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh----CCCC-CCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 144 RHMRE----IGIQ-PCVASLNVLIKALCKNSGTMDAAFKIFREMPN----RGCT-PDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 144 ~~~~~----~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..=++ .|-. .--..|..+-..|+-. |+++.|+...+.-+. .|-. .....+..+..++.-.|+++.|.+.
T Consensus 179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL-Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 179 MENLELSEKLGDRLAQGRAYGNLGNTYYLL-GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHhhhHHhhcchhcccCceeeee-ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 33221 1100 1112345555555555 899998877655432 2322 2345778899999999999999999
Q ss_pred HHHHHHC----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 214 FKEMETK----A-CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK-----GVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 214 ~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
|+..... | -.....+...|...|.-..+++.|+.++.+-... +..-....+.+|..++...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8875432 1 1123445666777787778888888887653321 1223466788899999999999999888
Q ss_pred HHHHHh
Q 011463 284 LQMMIS 289 (485)
Q Consensus 284 ~~~~~~ 289 (485)
....++
T Consensus 338 ae~hl~ 343 (639)
T KOG1130|consen 338 AELHLR 343 (639)
T ss_pred HHHHHH
Confidence 776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.031 Score=48.68 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=175.3
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHH--HHHhcCCcchHHHHHHHHhhcCCCCCHHH--HHHHHHHHhcc
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMIS--KLVSANQFRPAEDLLDRVNKEKCDITEDI--FLSICRGYGRV 98 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 98 (485)
.-.||-..|++.-.+... -+..|-..+..++. +-.-.|+++.|.+-|+.|... |.... +..|.-.--+.
T Consensus 95 agAGda~lARkmt~~~~~----llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~ 167 (531)
T COG3898 95 AGAGDASLARKMTARASK----LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hccCchHHHHHHHHHHHh----hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhc
Confidence 346788888888776652 23334444444443 335679999999999999863 22222 22333334567
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH--HHHHH--HHHhcCCChH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPCVASL--NVLIK--ALCKNSGTMD 173 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~ll~--~~~~~~~~~~ 173 (485)
|..+.|...-++..... +.-...+...+...+..|+++.|+++++.-+... +.++..-- ..++. +......+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 88888888888877653 3456788888999999999999999998776543 23333211 11221 1111124566
Q ss_pred HHHHHHHhhhhCCCCCCHH-hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSY-TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
.|...-.+..+. .|+.. .-..-..++.+.|+..++-.+++.+-+....|+. + .+..+.+.|+ .++.-++..
T Consensus 247 ~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHH
Confidence 666666666654 33322 2223456788889999999999988876444442 2 2233344454 333333333
Q ss_pred HhC-CCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHhHC
Q 011463 253 RSK-GVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC-KEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 253 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 325 (485)
.+. ..+| +....-.+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221 1222 4555666777777888888887777666553 566777777766554 448888888888887765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00018 Score=47.77 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=51.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhcc
Q 011463 415 TCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQ 481 (485)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 481 (485)
..|.+.+++++|.+.+++++..+ +.+...|.....++.+.|++++|.+.++++++.+..+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46778889999999999988863 4455667777888889999999999999999888776665543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.019 Score=44.46 Aligned_cols=154 Identities=10% Similarity=0.024 Sum_probs=107.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
..+..+.=++++..+-..+-... .|++.--..|..+....|+..+|...|++...--+..|......+.++....+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 33444444555444433333332 3667777788899999999999999999988754556788888899999999999
Q ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHH
Q 011463 137 KLAFRFYRHMREIG---IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL 213 (485)
Q Consensus 137 ~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 213 (485)
..|...++++.+.+ -.|| +...+...+... |.+..|..-|+.....- |+..........+.+.|+..++..-
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~-g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQ-GKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhc-CCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHH
Confidence 99999999988754 2233 333445556666 99999999999998873 4444444445557778876666544
Q ss_pred HHHH
Q 011463 214 FKEM 217 (485)
Q Consensus 214 ~~~~ 217 (485)
+..+
T Consensus 216 ~~~v 219 (251)
T COG4700 216 YVAV 219 (251)
T ss_pred HHHH
Confidence 4443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00012 Score=38.86 Aligned_cols=25 Identities=48% Similarity=0.982 Sum_probs=9.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.029 Score=46.10 Aligned_cols=144 Identities=9% Similarity=0.074 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+...++.++...|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-..+..++.. -+.-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~--~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI--MVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH--HHHh
Confidence 34556666666677777777777777766566777777777777778888888888877665433344444331 0010
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWS 446 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 446 (485)
.....+.-. ++..|...+.++...... ++...|.-.-+..-.|+..+|++..+.|... .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 111122233 788888888888776554 5666665555556678999999999999876 45444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00026 Score=46.36 Aligned_cols=63 Identities=8% Similarity=0.172 Sum_probs=31.1
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHh
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKE 113 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 113 (485)
+.+|..++..+...|++++|+..|++.++.++. +...|..+..++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444555555555555555555555554433 4444455555555555 35555555554443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0097 Score=52.08 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=105.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccch---h---hhHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLH---I---RIHN 377 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~---~~~~ 377 (485)
.++...|+.++|..+--...+.. ..+....-.-..++--.++.+.+...|++.++.+ |+....... . ..+-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 34567788888888777766653 2233333333334556778888888888887744 543332210 0 0000
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhC---CCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---HHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNR---SISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTW---SAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~ 450 (485)
.-.....+. ++..|.+.|.+.+.. +.+|+...|.....+..+.|+..+|+.-.++.... |.... ..-..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHH
Confidence 111122334 788899999988864 34556667777778888999999999999998864 33322 22344
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
++...+++++|++.++++++....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 566789999999999999987543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0073 Score=49.53 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=28.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
..+...|++.+|++.|+.+.... .+.+--..+...++.++.+.|+++.|...++++++..|
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34445555555555555555321 11111233444455555555555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0047 Score=51.92 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=88.8
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc---C-Chh
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---T-DPN 389 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-~~~ 389 (485)
....-++.-...+ +-|...|-.|...|...|+.+.|..-|.+..+. .|+..... ..+...+.. . ...
T Consensus 140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~------~g~aeaL~~~a~~~~ta 210 (287)
T COG4235 140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEIL------LGLAEALYYQAGQQMTA 210 (287)
T ss_pred HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHhcCCcccH
Confidence 3333344433433 668889999999999999999999999998874 34433221 133333222 2 678
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
++..+|+++....+. |..+...|...+...|++.+|...|+.|.+. -|....+..++.
T Consensus 211 ~a~~ll~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 211 KARALLRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 899999999988766 7788888889999999999999999999987 344455555554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0073 Score=56.93 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=27.5
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
|++++|...++++...+ |+...|..+..++...|+.++|.+.|++...
T Consensus 434 g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 434 GKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666655543 3455555555566666666666666655544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.013 Score=48.16 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCcHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDE----GTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 462 (485)
.+.+.|.+.|.+..|..-++.+++. -|+. .....++.++.+.|..+.|.
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3677899999999999999999987 3332 34456788899999888554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.06 Score=47.28 Aligned_cols=283 Identities=14% Similarity=0.169 Sum_probs=156.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
+++..++......|+.+-|..+.+. .|++. .-+..+.+.|+.+.| +.++.+.| +|| -+|..++
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~---------Ep~~~---~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl 63 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL---------EPRAS---KQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLL 63 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc---------CCChH---HHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHH
Confidence 4677888888999999999988863 23332 224455667766666 44555543 112 2444444
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
..--+.. .. +.+ .+... .|.. ..+...|++..+.+.-..+|.+--+. ...-...+...... .+.
T Consensus 64 ~L~~~l~-~s---~f~-~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~-----~~~a~~~l~~~~~~-~~~ 127 (319)
T PF04840_consen 64 HLKRKLS-LS---QFF-KILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF-----QELANLHLQEALSQ-KDV 127 (319)
T ss_pred HHHHhCC-HH---HHH-HHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH-----HHHHHHHHHHHHhC-CCh
Confidence 4332222 11 222 33322 1222 22344455555655555554432110 01111222222222 333
Q ss_pred HHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH---H-HCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 011463 173 DAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEM---E-TKACSPTVVTYTSLINGLCQSKSVEEAMR 247 (485)
Q Consensus 173 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 247 (485)
+.-...+..+.+. +-..+......++ ++-.++++.- . +.+......+.+..+.-+...|+...|.+
T Consensus 128 ~~~~~~L~~a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~k 198 (319)
T PF04840_consen 128 EEKISFLKQAQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEK 198 (319)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHH
Confidence 4333333333321 0011111111111 1112222211 1 11112223455666777788899888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCC
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL 327 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 327 (485)
+-.+.. .|+...|...+.+++..+++++-..+... .-++.-|..++.+|.+.|+..+|..++.++
T Consensus 199 l~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~----- 263 (319)
T PF04840_consen 199 LKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKI----- 263 (319)
T ss_pred HHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----
Confidence 876663 57889999999999999999987776432 226688999999999999999999888762
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
+ +..-+..|.+.|++.+|.+.-.+.
T Consensus 264 ~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 264 P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 1 245677889999999988775443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.083 Score=49.82 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH----------HHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV----------LAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.|.+..|..+.......-.++.|...|-+...- +.......+ ...-+--|++++|.++|-.+-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 467788888887777777777777777655432 111111111 111222467777877776665533
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT 230 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 230 (485)
..+....+. |++-.+.++++.--.. +-..-...|+.+...++....|++|.+.|..-... .
T Consensus 765 --------LAielr~kl-gDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 --------LAIELRKKL-GDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred --------hhHHHHHhh-hhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 122333343 6666665555432111 00112346677777777777777777776654321 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
..+.++.+...+++...+.+.+ +-+....-.+..++...|.-++|.+.+-+... | ...+..|...+
T Consensus 827 ~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELN 892 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHH
Confidence 2345555555555544444333 33445555666667777777766665543311 1 13345566666
Q ss_pred CHHHHHHHHHHH
Q 011463 311 KLQEAVEILDRM 322 (485)
Q Consensus 311 ~~~~a~~~~~~~ 322 (485)
++.+|.++-++.
T Consensus 893 QW~~avelaq~~ 904 (1189)
T KOG2041|consen 893 QWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.025 Score=46.44 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH-----H
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS-----L 267 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 267 (485)
..+.++.++.-.+.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-..+..+++. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44566666777777777777787777766566667777777777778888888888876655422333333332 2
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 268 MDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
...|.-++++..|...+.++...+.. ++...|.-.-+....|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445566777777777777665433 4444444444445567777888887777765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0078 Score=51.17 Aligned_cols=98 Identities=12% Similarity=0.022 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHhcC--CCCCHhhHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--EDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITVLA 128 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 128 (485)
|......+.+.|++++|...|+.+++..|... ..++..+...|...|++++|...|+.+.+.- -+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333556777777777777776654421 3456666677777777777777777776541 0112344444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 011463 129 ILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
++...|+.++|..+|+.+.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666777777777777766643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=56.25 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=76.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh----CCC-CCChh
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMR----SKGV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS----KRH-RPNIV 297 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~ 297 (485)
.|..|...|.-.|+++.|+...+.-. +-|- ......+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555555566677777776654422 1121 11234456667777777888888777766432 221 11233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHC----C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQ----G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+.-+|...|.-..++++|+.++.+-... + .--....+..+..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666666667777777776653221 0 112345666777777777887777777666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0057 Score=48.82 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=62.3
Q ss_pred CCCHHhHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 47 RHDNSTFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
..+-.+|..++..+.+ .|..+-....+..|.+-|+..|..+|+.|++.+-+ |.+- -..+|+.+--
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------- 113 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------- 113 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc--------
Confidence 5577777777777754 35666677777788888887788888888877665 3221 1111111100
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
- .-.+.+-|++++++|...|+-||..++..++..+.+.
T Consensus 114 -------h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 114 -------H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred -------c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 0 0123455666777777777777777777777666444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0083 Score=52.55 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=50.1
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-----------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDN-----------STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
+.+.+.|++..|...|++++.........+. .++..+.-++.+.+++..|++..+.++..++. |+-.+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 4678888888888888887743222211121 13444444455555555555555555554433 44444
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHh
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
..-..++...|+++.|+..|+++.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4445555555555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.16 Score=49.10 Aligned_cols=123 Identities=10% Similarity=0.074 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
..+...-+..+.+..-+.-|+.+-..-. .+++ .......+..+.+.|++++|...|-+.+.. ..| .
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 4456667888888999999998876533 2333 234555567778899999999888776643 122 1
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
.++.-|....+..+-...++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 245555666677777778888888874 466666788889999888887777666544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0076 Score=48.13 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhcc-----CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011463 83 ITEDIFLSICRGYGRV-----HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVAS 157 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 157 (485)
.+-.+|..+++.|.+. |-.+-....+..|.+.|+..|..+|+.|+.++=+ |.+ .|...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH-
Confidence 3677777777777654 5566666777888888888888888888877643 221 12221
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+..+...+ ..+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 108 fQ~~F~hy---p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY---PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC---cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 22222112 24568899999999999999999999999999977665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00087 Score=45.12 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD--GCL---PD-EGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
..+++.+...|...|++++|+..|++..+. ... |+ ..++..+..++...|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457888999999999999999999998854 112 22 45677788899999999999999999876
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.018 Score=44.34 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASL 158 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 158 (485)
.+...++..+...|+++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 356667777778888888888888888765 55677888888888888888888888887753 4777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0028 Score=41.95 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=27.9
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.+.++++.|.++++.+...+|. +...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555555443 4444444555555555555555555555443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0087 Score=50.90 Aligned_cols=97 Identities=10% Similarity=0.037 Sum_probs=74.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVD--SLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD----EGTWSAVMT 450 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~ 450 (485)
.......+. ++++|...|+.+.+..+... +..+-.+..+|...|++++|...|+.+.+. .|+ ...+..++.
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHH
Confidence 444443444 89999999999998755421 356777889999999999999999999976 232 344555667
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
++...|+.++|.+.++++++..+...
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 78899999999999999999765544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.14 Score=45.55 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555666666666666666666666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0091 Score=45.59 Aligned_cols=96 Identities=6% Similarity=-0.044 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.......-+...|++++|..+|+.+...++. +..-|..|..++-..+++++|+..|......+ .-|+..+.....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 3444455667889999999999988887765 67778888888888899999999988876654 346666777888888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 011463 132 EENQLKLAFRFYRHMREI 149 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~ 149 (485)
..|+.+.|...|+.....
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999888873
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.26 Score=46.72 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=122.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH----------HHHhccCChhhHHHHHHHHHhcCC
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC----------RGYGRVHRPLDAMRVFDKMKEFGC 116 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 116 (485)
.|.+..|..+...-...-.++.|...|-+.... +....-..|- ..-+--|++++|.++|-.+-.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 567888999998888888888888888766443 1221111111 12223488999999887776542
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC----VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
..+..+.+.|++-...++++. .|-..| ...++.+...++.. ..+++|.+.+..-...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~~yY~~~~~~------- 825 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAAKYYSYCGDT------- 825 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccch-------
Confidence 345566677777766666543 111111 24566666666665 6777777777654321
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLC 272 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (485)
...+.++.+..++++-+.+-..+. .+....-.+...+...|.-++|.+.+-+.- .| ...+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHH
Confidence 234566666666666555544443 355566677778888888777776664322 11 23455666
Q ss_pred cCCChHHHHHHHHHH
Q 011463 273 KGGCSSQAMELLQMM 287 (485)
Q Consensus 273 ~~~~~~~a~~~~~~~ 287 (485)
..+++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777766553
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.014 Score=42.14 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+++..|+++.|++.|.+.+..-|. ....||.-..++.-.|+.++|++-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444444444332 344444444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0055 Score=47.28 Aligned_cols=104 Identities=22% Similarity=0.374 Sum_probs=72.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCH------------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDN------------------STFSLMISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
......++...+...++.+..-....+-++. .+...++..+...|++++|.++++.+....|
T Consensus 14 ~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP 93 (146)
T PF03704_consen 14 RAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDP 93 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 3445678999999999888853332222221 1234455667789999999999999999987
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHh-----cCCCCCHhhHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKE-----FGCEPTPKSYI 124 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 124 (485)
- +...+..+|.+|...|+...|++.|+++.. .|+.|++.+-.
T Consensus 94 ~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 94 Y-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred C-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 6 889999999999999999999999998853 48888877644
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.013 Score=44.79 Aligned_cols=96 Identities=9% Similarity=-0.121 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011463 374 RIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW 453 (485)
Q Consensus 374 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 453 (485)
.+|......|...++++|..+|+-+...++. +...|..|..+|-..+++++|+..|......+ .-|...+-....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 3444444555555999999999999887655 77788889999999999999999999887664 344555566788999
Q ss_pred hcCcHHHHHHHHHHHHHc
Q 011463 454 DRRKMRQAAELLLLELMN 471 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~ 471 (485)
..|+.+.|...|+.++++
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999999884
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.18 Score=44.83 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=51.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKR---HRPNIVTYSTLLNGLCK---EGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+...++-+|....+++...++.+.+.... ......+-....-++.+ .|+.++|..++..+......+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556788888888888888887652 11122222334445556 7888888888888555555677788877
Q ss_pred HHHHHH
Q 011463 337 IISCFC 342 (485)
Q Consensus 337 l~~~~~ 342 (485)
+++.|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 777664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.38 Score=46.08 Aligned_cols=318 Identities=13% Similarity=0.109 Sum_probs=177.5
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc--chHHHHHHHHhhcCCCCCHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF--RPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
..++...+++-+...+.+..|+++-..+.. +-. .....|......+.+..+. +++.+.+.+=+..... ....|
T Consensus 436 ~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~---p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy 510 (829)
T KOG2280|consen 436 RHLSEEVVIDRLVDRHLYSVAIQVAKLLNL---PES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISY 510 (829)
T ss_pred hhhchhhhhHHHHhcchhHHHHHHHHHhCC---ccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeH
Confidence 445666778888999999999999988771 111 1255677777777776433 2333333333332222 34467
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCC----CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCC
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCE----PTPKSYITVLAILVEENQLKLAFRFYRHMREIG-----------IQP 153 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~ 153 (485)
..+.......|+++-|..+++.=...+.. .+...+...+.-+.+.|+.+....++-.+...- .+.
T Consensus 511 ~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~ 590 (829)
T KOG2280|consen 511 AAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPL 590 (829)
T ss_pred HHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 77777777889999998888754332210 122234555666677777777776666554321 011
Q ss_pred CHHHHHHHHH--------HHHhcCCChHHHHHHH--Hhhhh----CCCCCCHHhHHHHHHHHHHcCCHhHHH--------
Q 011463 154 CVASLNVLIK--------ALCKNSGTMDAAFKIF--REMPN----RGCTPDSYTYGTLINGLCRLGKIYEAK-------- 211 (485)
Q Consensus 154 ~~~~~~~ll~--------~~~~~~~~~~~a~~~~--~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~-------- 211 (485)
....|..++. .+... ++-..+...+ +...+ .+..|+ ......++.+.....-..
T Consensus 591 a~~lY~~~~r~~~~~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred hhHHHHHHHHhhchhhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 1111211111 00111 1111111111 11000 111112 222333444433311111
Q ss_pred --HHHHHHHH-CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 212 --ELFKEMET-KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 212 --~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
++.+.+.. .+......+.+--+.-+...|+-.+|.++-.+.+ -||-..|..-+.+++..+++++-+++-+..
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk- 741 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK- 741 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-
Confidence 11122211 1223344455666666777788888888777665 568888888888888888887766554433
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 289 SKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 289 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
.++.-|..++.+|.+.|+.++|.+.+.+... . .....+|.+.|++.+|.++--+
T Consensus 742 -----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~------l---~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 -----KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG------L---QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred -----CCCCCchhHHHHHHhcccHHHHhhhhhccCC------h---HHHHHHHHHhccHHHHHHHHHH
Confidence 1366788888899999999999888765432 1 1567788888888888776544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.048 Score=40.30 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhh
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLT 409 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 409 (485)
|..++..++.++++.|+.+....+++..- |+.++...-. +. --......|+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~----------------~~--------~~~~spl~Pt~~l 54 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE----------------GD--------YPPSSPLYPTSRL 54 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc----------------Cc--------cCCCCCCCCCHHH
Confidence 45678888999999999998888887654 3333321110 00 0112345789999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhc
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLD-GCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~ 455 (485)
..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-....
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998876 7777888999988765533
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.018 Score=51.85 Aligned_cols=67 Identities=6% Similarity=-0.065 Sum_probs=50.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
|.++..+..+..+|.+.|++++|+..|++.++.++. +. .+|..+..+|.+.|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445667888888888888888888888888877654 23 34777888888888888888888887764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.24 Score=41.05 Aligned_cols=179 Identities=12% Similarity=0.041 Sum_probs=94.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCC--CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH-
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCD--ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE- 132 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 132 (485)
-+..-.+.|++++|.+.|+.+....|. -...+...++.++-+.++++.|+...++....-.......|...|.+++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 344445777777777777777766543 12344555666677777777777777777665322223344444444442
Q ss_pred ------cCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 133 ------ENQLK---LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 133 ------~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+.. .|..-|+.++..- |+.. =...|..-+..+... =...=..+.+.|.+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~--------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k 179 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRY--PNSR--------------YAPDAKARIVKLNDA----LAGHEMAIARYYLK 179 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHC--CCCc--------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 22222 3333344444322 3321 011111111111110 00011235666777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 204 LGKIYEAKELFKEMETKACSPT---VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
.|.+..|..-+++|.+. .+.+ ...+-.+..+|...|-.++|.+.-.-+...
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 78888887777777776 2222 234555667777777777777766555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0033 Score=42.25 Aligned_cols=63 Identities=11% Similarity=0.136 Sum_probs=43.0
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhh
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNK 78 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 78 (485)
+..+..++...|++++|+..|++++.. .....++ ..++..+..++...|++++|++.+++..+
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456777888888888888888887754 2222221 34677777888888888888888877654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.35 Score=45.46 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 358 (485)
+...+..-+.+...+..|.++|..|-. ...+++.....++|++|..+-++..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCc
Confidence 333444444445555566666655432 1234445556666666666655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.4 Score=42.17 Aligned_cols=64 Identities=6% Similarity=0.078 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALW-DRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 471 (485)
+..+.-.+..+-...|++..|..--+...+. .|....|..+...-. ..|+-.++..++-+.++-
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3344444555555666666666555555443 555555555555433 336666666666655543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.072 Score=44.44 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=46.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC---HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHH
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD---NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGY 95 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 95 (485)
.+...|++..|...|...++ +.|.+ +.++..|..++..+|++++|...|..+.+.-++. -++.+..+....
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~----~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIK----KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 34445556666666655552 22222 3344555556666666666666665555543321 234455555555
Q ss_pred hccCChhhHHHHHHHHHhc
Q 011463 96 GRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|+.++|...|+++.+.
T Consensus 226 ~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 226 GRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5556666666666555554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.52 Score=42.41 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC--CHH---------hHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRH--DNS---------TFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
.+.....+-.+.+.+++++|++.+.....+....-+| |.. .=+..++.++..|++.++..+++++...-
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3334444555677788888888777666321111111 111 11344566777888888888777766554
Q ss_pred CC----CCHHHHHHHHHHHhc
Q 011463 81 CD----ITEDIFLSICRGYGR 97 (485)
Q Consensus 81 ~~----~~~~~~~~l~~~~~~ 97 (485)
.+ .+..+|+.++-.+++
T Consensus 159 lkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhH
Confidence 33 567777775555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.043 Score=40.53 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHH---------------HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEME---------------TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..++..++.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++.+.+.+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455556666666666666555554431 1122344455555555555555555555555554433
Q ss_pred -CCCCCHhhHHHHHH
Q 011463 256 -GVEPNVFTYSSLMD 269 (485)
Q Consensus 256 -~~~~~~~~~~~l~~ 269 (485)
+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 34444444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0074 Score=35.01 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
++..+...|...|++++|.++|+++++..|. +...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 3444555555555555555555555555443 44444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.017 Score=52.00 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=40.1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG----TWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+...++.+..+|...|++++|+..|++.++. .|+.. .|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666654 44432 3556666666666666666666666664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.2 Score=36.47 Aligned_cols=91 Identities=19% Similarity=0.128 Sum_probs=50.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH---HHHHHHHHHhc
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED---IFLSICRGYGR 97 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 97 (485)
++...|+.+.|++.|.+++ .-.|..+..|+.-..++.-+|+.++|++-+++..+.....+.. .|..-...|..
T Consensus 52 alaE~g~Ld~AlE~F~qal----~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL----CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHH----HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 4455666666666666666 3344556666666666666666666666666665543222222 23333344555
Q ss_pred cCChhhHHHHHHHHHhcC
Q 011463 98 VHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~ 115 (485)
.|+-+.|..-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 566666666666655544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.81 Score=42.83 Aligned_cols=410 Identities=11% Similarity=0.023 Sum_probs=232.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...|..++.--....+.+.+..++..++..-|- -..-|......-.+.|..+.+.++|++-... ++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 4445666665444444556777788888766432 3456777888888999999999999998874 6778888877776
Q ss_pred HHH-HcCCHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH---
Q 011463 129 ILV-EENQLKLAFRFYRHMREI-GIQ-PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC--- 202 (485)
Q Consensus 129 ~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 202 (485)
.+. ..|+.+.....|+..... |.. .+...|...+..-..+ +++.....+++++++. ....++....-|.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~q-ks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQ-KSWKRVANIYERILEI----PLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhcc-ccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHH
Confidence 654 467888888889888764 321 3445677777776666 9999999999999875 2222222222211
Q ss_pred Hc------CCHhHHHHHHHHHHH--------------------CCCCCCh--hhHHHHHH-------HHHccCCHHHHHH
Q 011463 203 RL------GKIYEAKELFKEMET--------------------KACSPTV--VTYTSLIN-------GLCQSKSVEEAMR 247 (485)
Q Consensus 203 ~~------~~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~ll~-------~~~~~~~~~~a~~ 247 (485)
+. ...+++.++-..... .+.+.+. ...+.+-. .+-......+...
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 223333333222221 0000000 01111111 1112222333333
Q ss_pred HHHHHHhC---CC----CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 248 LFEEMRSK---GV----EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILD 320 (485)
Q Consensus 248 ~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 320 (485)
.|+.-.+. .+ .++..+|...+..-...|+.+.+.-++++..-. ...=...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 34433332 11 224567888888888899999999999887542 11112334444444455699999998888
Q ss_pred HHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHH---HHHH
Q 011463 321 RMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF---QVYL 396 (485)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~---~~~~ 396 (485)
...+..++..+.+.-.-....-..|+++.|..+++...+.- |+...... .-+....+. +.+.+. +++.
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l------~~~~~e~r~~~~~~~~~~~~l~s 427 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVL------RKINWERRKGNLEDANYKNELYS 427 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHH------HHHhHHHHhcchhhhhHHHHHHH
Confidence 77665443333322222223344679999999999998753 55332210 111111122 444444 2333
Q ss_pred HHHhCCCccchhhHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---cHHHHHHHHHHH
Q 011463 397 SMRNRSISVDSLTYSSLIT-----CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRR---KMRQAAELLLLE 468 (485)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 468 (485)
.... +.. +......+.- .+.-.++.+.|..++.++.+. ++++...|..++..+...+ +.+--.-++..+
T Consensus 428 ~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~ 504 (577)
T KOG1258|consen 428 SIYE-GKE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGREYDLLEPIDWKE 504 (577)
T ss_pred Hhcc-ccc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcchhhhhhhhHHHHH
Confidence 2222 111 2222222222 233468999999999999986 5677777888887766554 233333344444
Q ss_pred HHcCCCccc
Q 011463 469 LMNKCVEAE 477 (485)
Q Consensus 469 ~~~~~~~~~ 477 (485)
......+++
T Consensus 505 ~~~~~~~~~ 513 (577)
T KOG1258|consen 505 LKMLIDFDD 513 (577)
T ss_pred Hhhhccccc
Confidence 444444333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.048 Score=47.98 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=75.1
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCC-----C---------CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhh
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKC-----D---------ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS 122 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~-----~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 122 (485)
...+.+.|++..|...|+++...-. + .-..++..+..+|.+.+++..|++.-++.++.+ ++|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 4567788888888888877544210 0 112345556666777777777777777777665 556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh-HHHHHHHHhhhh
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM-DAAFKIFREMPN 184 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~a~~~~~~~~~ 184 (485)
.-.-..++...|+++.|+..|+++.+ +.|+......-+..+.+..... +...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777777777777777777776 3365555554444443321222 233455555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.058 Score=40.32 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+....+.|++++|++.|+.+......| +-...+-..++.++.+.+++++|...+++.++.+|......|...+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 444556677777777777766321111 223445566666777777777777777777766654333334444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.77 Score=43.33 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccch--
Q 011463 331 AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDS-- 407 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~-- 407 (485)
..+...+..-+.+...+.-|-++|.+|-... .++...... +..+|+.+-++..+.- |++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~k----------------siVqlHve~~~W~eAFalAe~hPe~~--~dVy~ 808 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDLK----------------SLVQLHVETQRWDEAFALAEKHPEFK--DDVYM 808 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccHH----------------HHhhheeecccchHhHhhhhhCcccc--ccccc
Confidence 3444444444455556666666666653211 333333344 5566665555444321 111
Q ss_pred ---------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 408 ---------LTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 408 ---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.-|...-.+|.+.|+..+|.++++++..
T Consensus 809 pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 809 PYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1122333455555666666666555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.33 Score=45.65 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHhc---CCChHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG-IQPC-----VASLNVLIKALCKN---SGTMDAA 175 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~ll~~~~~~---~~~~~~a 175 (485)
.-+|.-+... +|| .+..++....-.|+-+.+++.+.+..+.+ +.-. .-.|+.++..++.. ..+.+.+
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555553 233 34455556666778888888777765532 2111 12233333333322 3677888
Q ss_pred HHHHHhhhhCCCCCCHHhHH-HHHHHHHHcCCHhHHHHHHHHHHHCC---CCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYG-TLINGLCRLGKIYEAKELFKEMETKA---CSPTVVTYTSLINGLCQSKSVEEAMRLFEE 251 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 251 (485)
.++++.+.++ -|+...|. .-.+.+...|++++|++.|++..... .+.....+--+..++.-..+|++|...|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888876 34544443 33456677788888888888654321 112334455566677778888888888888
Q ss_pred HHhCCCCCCHhhHHHHHH-HHHcCCCh-------HHHHHHHHHHHhC
Q 011463 252 MRSKGVEPNVFTYSSLMD-GLCKGGCS-------SQAMELLQMMISK 290 (485)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~~ 290 (485)
+.+.+ ..+..+|.-+.. ++...|+. ++|.++|.++...
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 88764 334444444433 33446666 7888888877553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.16 Score=43.99 Aligned_cols=131 Identities=7% Similarity=0.047 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHh----CCCc-----cc
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRN----RSIS-----VD 406 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~----~~~~-----~~ 406 (485)
+..+....+.++++++.|+...+.....++..+ ..++|..+...+... |+++|.-+..+..+ .+++ ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L--Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAML--ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee--eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 444455555556666666555543222222221 233444444445444 55555544443332 1111 00
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLEL 469 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 469 (485)
....-.+.-++...|....|.+..++..+. |-++. ......+.+.|...|+.+.|+.-|+.+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 111223334555566666666665555432 32221 1223345556666777777776666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.38 Score=43.75 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCC-HHhHHHHHHHHHh---------cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 27 DVNKALVIFDSATAEYANGFRHD-NSTFSLMISKLVS---------ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
+.+.|+.+|++++.. +...|+ ...|..+..++.. .....+|.++.++..+.++. |..+...+..+..
T Consensus 273 ~~~~Al~lf~ra~~~--~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNK--SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhc--ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 556788889988832 223333 4555555544332 22334677778888887765 7777777888778
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCChH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA---SLNVLIKALCKNSGTMD 173 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~ 173 (485)
-.++++.|..+|++....+ |....+|......+.-.|+.++|.+.+++..+.. |... .....+..|+. ..++
T Consensus 350 ~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~--~~~~ 424 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP--NPLK 424 (458)
T ss_pred hhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC--Cchh
Confidence 8888999999999988865 3345666666667777899999999998877644 4332 22333334444 4677
Q ss_pred HHHHHHHhhh
Q 011463 174 AAFKIFREMP 183 (485)
Q Consensus 174 ~a~~~~~~~~ 183 (485)
.+.+++-+-.
T Consensus 425 ~~~~~~~~~~ 434 (458)
T PRK11906 425 NNIKLYYKET 434 (458)
T ss_pred hhHHHHhhcc
Confidence 7777775433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.78 Score=41.30 Aligned_cols=421 Identities=12% Similarity=0.146 Sum_probs=219.1
Q ss_pred ccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 9 WSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
.+...++.++++-+..++..++.++.++++. ..+|-=+.+|...+..-....++.....+|.+++.... +...|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~----~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW 112 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLS----SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLW 112 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhc----CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHH
Confidence 4455677888899999999999999999988 44444566777777777778889999999999888743 56677
Q ss_pred HHHHHHHhccCChh------hHHHHHHHHHh-cCCCCC-HhhHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCC
Q 011463 89 LSICRGYGRVHRPL------DAMRVFDKMKE-FGCEPT-PKSYITVLAILV---------EENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 89 ~~l~~~~~~~~~~~------~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~ 151 (485)
...+.-..+.++.- ...+.|+-... .++.|- ...|+..+..+- .+.+++.....|.+++...+
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcc
Confidence 76665544433211 12233333322 234443 333444433221 23334555666666664221
Q ss_pred CCCH------HHHHHHHHHH------HhcCCChHHHHHHHHhhhhC--CCC----CCHHhHHH-----------HHHHHH
Q 011463 152 QPCV------ASLNVLIKAL------CKNSGTMDAAFKIFREMPNR--GCT----PDSYTYGT-----------LINGLC 202 (485)
Q Consensus 152 ~~~~------~~~~~ll~~~------~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~ 202 (485)
..-. ..|..=+... ....--+-.|...++++... |.. .+..+++. .|+.-.
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 1000 0111111100 00112234455555554431 211 12222222 222111
Q ss_pred Hc-----CC-HhH-HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHcC
Q 011463 203 RL-----GK-IYE-AKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLM-DGLCKG 274 (485)
Q Consensus 203 ~~-----~~-~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 274 (485)
.. |+ .++ ..-++++.... +......|----.-+...++-+.|+...+..... .|+ .+..+ ..|.-.
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel~ 346 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYELV 346 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhhc
Confidence 11 11 111 11122222221 2223333433333444455555565555443322 122 11111 111112
Q ss_pred CChHHHHHHHHHHHh--------------CCC---------------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 275 GCSSQAMELLQMMIS--------------KRH---------------RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
.+-+.....|+...+ .+. ..=..+|...+..-.+..-++.|..+|-++.+.
T Consensus 347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~ 426 (660)
T COG5107 347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE 426 (660)
T ss_pred ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 222222221211110 000 012344566677777777889999999999888
Q ss_pred C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCC
Q 011463 326 G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI 403 (485)
Q Consensus 326 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~ 403 (485)
+ +.++..++++++..++ .|+...|..+|+--+.. -||...|. +..+..+... +-+.|..+|+....+--
T Consensus 427 ~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~------~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 427 GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYK------EKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHH------HHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 7 5677788888887665 67888899998876653 35555443 1333344444 77778888885543211
Q ss_pred c-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011463 404 S-VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTAL 452 (485)
Q Consensus 404 ~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 452 (485)
+ --...|..++.--..-|+...+..+-++|.+. -|-..+......-|
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 1 01457888888888899999999888888875 45444444333333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.57 Score=39.74 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
.......|++.+|..+|.......+. +...-..++.+|...|+.+.|..++..+....-.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456777778888877777777655 55666677777778888888888877776532111111112233444444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--CCCCCHHhHHHHHHHHHHcC
Q 011463 137 KLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDAAFKIFREMPNR--GCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 205 (485)
.+...+-.++.. .| |...-..+...+... |+.+.|.+.+-.+.++ |.. |...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~-g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLV-GRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 444444444333 23 333333344444444 6666666665555544 222 3444555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.64 Score=39.45 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=68.6
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|++..|...|+........ +...-..+..+|...|+.+.|..++..+....-.........-+..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 7777777777776665333 345555667777777777777777777654321111111112223333333333333333
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC
Q 011463 250 EEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 310 (485)
...-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 227 ~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333221 22444444555566666666666666555544311 113444444555444444
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.98 Score=41.31 Aligned_cols=417 Identities=13% Similarity=0.143 Sum_probs=214.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-HhccCChhhHHH
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHRPLDAMR 106 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~ 106 (485)
..+...+|+.+. ..++.|+..|...+..+.+.+.+.+...+|..|+..+|. ++..|.....- |-..-+++.|..
T Consensus 87 ~~rIv~lyr~at----~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRa 161 (568)
T KOG2396|consen 87 PNRIVFLYRRAT----NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARA 161 (568)
T ss_pred HHHHHHHHHHHH----HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHH
Confidence 345667777777 456679999999999999999899999999999999876 77777765543 333445999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHH----Hc-------C-C-HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHH----Hhc
Q 011463 107 VFDKMKEFGCEPTPKSYITVLAILV----EE-------N-Q-LKLAFRFYRHMR-EIGIQPCVASLNVLIKAL----CKN 168 (485)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------~-~-~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~----~~~ 168 (485)
+|.+-++.+ +.++..|....+.-. +. | + -++-.++-+.-. .....++........... ...
T Consensus 162 lflrgLR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~ 240 (568)
T KOG2396|consen 162 LFLRGLRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEK 240 (568)
T ss_pred HHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHH
Confidence 999988864 334555544333211 00 0 0 000011100000 000111111110000000 000
Q ss_pred CCCh-HHHHHHHHhhhhCCCCCCHHhHHHHHH----HHHH---------------cCCHhHHHHHHHHHHHCCCCCChhh
Q 011463 169 SGTM-DAAFKIFREMPNRGCTPDSYTYGTLIN----GLCR---------------LGKIYEAKELFKEMETKACSPTVVT 228 (485)
Q Consensus 169 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~ 228 (485)
.... +.-..+.+.+...+ +-++.++..+.. .+.+ ..+-+....+|++..+. -|+...
T Consensus 241 ~d~~kel~k~i~d~~~~~~-~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 241 FDFLKELQKNIIDDLQSKA-PDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 0000 01111222222222 224444433322 1111 01123344666666543 345566
Q ss_pred HHHHHHHHHccC------CHHHHHHHHHHHHhCC-C-CCCHhhHHHHHHHHHcCCChH-HHHHHHHHHHhCCCCCChhhH
Q 011463 229 YTSLINGLCQSK------SVEEAMRLFEEMRSKG-V-EPNVFTYSSLMDGLCKGGCSS-QAMELLQMMISKRHRPNIVTY 299 (485)
Q Consensus 229 ~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~ 299 (485)
|+..|..|...- .+.....+++...+.+ . +.....|..+...+....... -|..+.... +..+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 666666655432 3444455555554432 2 223444555555555544333 233333333 33366666
Q ss_pred HHHHHHHHhcC-CHHH-HHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCC-HHH-HHHHHHHHHHCCCCCCcccccchhhh
Q 011463 300 STLLNGLCKEG-KLQE-AVEILDRMKLQGLKPDAGLYGKIISCFCDIGK-YQE-AANFLDEMVLGGITPNRLTWSLHIRI 375 (485)
Q Consensus 300 ~~l~~~~~~~~-~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
..-+....... +++- -..++..+...-..+....|+... .|+ .+. ...++-.....-..|+..++.
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~----- 463 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLK----- 463 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehh-----
Confidence 65555554321 2221 222233333321112222333222 222 111 111222222222356666655
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh--cCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011463 376 HNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK--KGDIHKSARIVDELVLD-GCLPDEGTWSAVMTA 451 (485)
Q Consensus 376 ~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 451 (485)
+.++..+... ...+|...+..+... ++|+...|..++..-.. .-+...+..+++.|... | .|...|...+.-
T Consensus 464 -s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 464 -SKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 3555555555 889999999999887 34577888877764322 23488889999999876 5 677788888777
Q ss_pred HHhcCcHHHHHHHHHHHHHc
Q 011463 452 LWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~ 471 (485)
=...|+.+.+-.++-++.+.
T Consensus 540 e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred hccCCCcccccHHHHHHHHh
Confidence 77889988888887777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.17 Score=42.26 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=78.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHhCCCc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHH
Q 011463 375 IHNTVVQGLCKTDPNRAFQVYLSMRNRSIS--VDSLTYSSLITCFCKKGDIHKSARIVDELVLD-G-CLPDEGTWSAVMT 450 (485)
Q Consensus 375 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~l~~ 450 (485)
.|+..+..+...++..|...|....+..+. .....+--|..++...|++++|..+|..+.+. + .+--...+.-+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566888888777999999999999986543 12233444889999999999999999999976 1 1112345666788
Q ss_pred HHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 451 ALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
+..+.|+.++|...|+++++.-+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 889999999999999999997543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.6 Score=38.31 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|...+-.+.-..++..|.+.++.--+. .-+-+..+...|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 444455556667777787777774332 1223455666666666 446666655554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.28 Score=36.80 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
+..+..-.....+.|++++|.+.|+.+...-|.. ...+-..++.+|.+.+++++|...+++.++.....-...|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344445666678999999999999998875432 34566778889999999999999999998875322234466566
Q ss_pred HHHHHcC
Q 011463 128 AILVEEN 134 (485)
Q Consensus 128 ~~~~~~~ 134 (485)
.+++...
T Consensus 90 ~gL~~~~ 96 (142)
T PF13512_consen 90 RGLSYYE 96 (142)
T ss_pred HHHHHHH
Confidence 5554433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.52 Score=44.34 Aligned_cols=178 Identities=14% Similarity=0.052 Sum_probs=109.9
Q ss_pred HHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH------HHHHHHHHHhc----cCC
Q 011463 31 ALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED------IFLSICRGYGR----VHR 100 (485)
Q Consensus 31 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~ 100 (485)
-.-+|+-++ +-+||. +..++....=.|+-+.+++.+....+.+--..+. .|+..+..+.. ..+
T Consensus 176 G~G~f~L~l----SlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 176 GFGLFNLVL----SLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHH----HhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 345566666 233444 3556777777889999999888877643111221 23333333332 456
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYI-TVLAILVEENQLKLAFRFYRHMREIG--I-QPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
.+.|.++++.+.+. -|+...|. .-.+.+...|++++|.+.|++..... . +.....+--+.-.+.-. ++|++|.
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~A~ 325 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEEAA 325 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHHHH
Confidence 77888999988876 36655554 34466677899999999999765421 1 11223333344444555 8999999
Q ss_pred HHHHhhhhCCCCCCHHhHHHHH-HHHHHcCCH-------hHHHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLI-NGLCRLGKI-------YEAKELFKEMET 219 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~-------~~a~~~~~~~~~ 219 (485)
..+..+.+.+- .+...|.-+. .++...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999988632 2444444433 344556766 888888888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.91 Score=39.46 Aligned_cols=165 Identities=11% Similarity=0.063 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHhcCCHH---HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchh
Q 011463 297 VTYSTLLNGLCKEGKLQ---EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHI 373 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 373 (485)
.++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++.+++.+.+.+|...-.. ....+.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~--- 159 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD--- 159 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH---
Confidence 34566677777766544 4555666664432 223455555566666678888888888888775321 223333
Q ss_pred hhHHHHHHHH---hcCChhHHHHHHHHHHhCCCccchh-hHHHH----HHHHHhcCC------HHHHHHHHHHHHhC-CC
Q 011463 374 RIHNTVVQGL---CKTDPNRAFQVYLSMRNRSISVDSL-TYSSL----ITCFCKKGD------IHKSARIVDELVLD-GC 438 (485)
Q Consensus 374 ~~~~~l~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~g~------~~~a~~~~~~~~~~-~~ 438 (485)
.++..+ ....+..+...+..+......|... ....+ +....+.++ .+....++....+. +.
T Consensus 160 ----~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~ 235 (278)
T PF08631_consen 160 ----SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK 235 (278)
T ss_pred ----HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence 333333 3335666666666666544444433 11111 111222222 33444445433322 22
Q ss_pred CCChhhHH---HH----HHHHHhcCcHHHHHHHHHHHHH
Q 011463 439 LPDEGTWS---AV----MTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 439 ~p~~~~~~---~l----~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.+..+-. ++ +..+.+.+++++|.++|+-.+.
T Consensus 236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 33333322 22 2346688999999999987664
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.42 Score=34.98 Aligned_cols=65 Identities=23% Similarity=0.321 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGI 362 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 362 (485)
......+..+..+|+-+.-.++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555667777777777777777776533 56777777778888888888888888888777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.77 Score=37.71 Aligned_cols=207 Identities=9% Similarity=0.032 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..|.....+|...+++++|...+.+..+-. ..+...|+. ...++.|.-+.+++.+. +--...|.--...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA--------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA--------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH--------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 345555566777788888888777766421 111111111 13445555555555543 1122344555566
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCCCHhhHHHHHHHHHcCC
Q 011463 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK---G--VEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~ 275 (485)
|..+|.++.|-..+++.-+. .+..+++.|++++.+.... + ...-...+..+...+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777766666554321 1223445555555544321 0 0111233445555666677
Q ss_pred ChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC---CCCCHHhHHHHHHHHHhcCCH
Q 011463 276 CSSQAMELLQMMISK----RHRPN-IVTYSTLLNGLCKEGKLQEAVEILDRMKLQG---LKPDAGLYGKIISCFCDIGKY 347 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 347 (485)
.+++|-..+.+-... ..-++ -..|...+-.+....++..|...++.-...+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 777666555443221 11112 1234555556666778889998888743332 233566788888777 56777
Q ss_pred HHHHHHHH
Q 011463 348 QEAANFLD 355 (485)
Q Consensus 348 ~~a~~~~~ 355 (485)
+++..++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 77766543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.49 Score=43.85 Aligned_cols=155 Identities=15% Similarity=0.185 Sum_probs=85.0
Q ss_pred HhccCChhhHHHHHH--HHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 95 YGRVHRPLDAMRVFD--KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
..-.|+++++.+..+ ++.. .+ .....+.++..+.+.|..+.|+++-..-. .-+.. ..+. |++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFeL----Al~l-g~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------HRFEL----ALQL-GNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHHH----HHHC-T-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhHH----HHhc-CCH
Confidence 344566776665554 2221 11 13446667777777777777777643211 11222 2233 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 77776654433 566788888888888888888877777542 455666677777777777777666
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
...|- ++....++.-.|+.++..+++..
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 65541 34444455556666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.32 Score=44.18 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=53.4
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+..+|.++.++..+.+.. |+.....+..+....|+.+.|...|++.... .|+ ...|......+.-.|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666555 6666666666666666677777777777665 343 334555555566677777777777
Q ss_pred HHHHHcCCC
Q 011463 466 LLELMNKCV 474 (485)
Q Consensus 466 ~~~~~~~~~ 474 (485)
+++++.++.
T Consensus 396 ~~alrLsP~ 404 (458)
T PRK11906 396 DKSLQLEPR 404 (458)
T ss_pred HHHhccCch
Confidence 776665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.27 Score=45.50 Aligned_cols=159 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHccCCHHHHHHHHH--HhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 19 LQLIRAEKDVNKALVIFD--SATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.+...-.+|++++.+..+ .+. +.+| ..-...++..+.+.|..+.|+++-. |+. .-.....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll----~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl 329 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLL----PNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELAL 329 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTG----GG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhc----ccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHH
Confidence 344555777777666665 222 1222 4446777777777887777776643 221 2333445
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
+.|+.+.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..++-.+.-. |+.+...
T Consensus 330 ~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~-g~~~~L~ 393 (443)
T PF04053_consen 330 QLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST-GDREKLS 393 (443)
T ss_dssp HCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC-T-HHHHH
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh-CCHHHHH
Confidence 677777777655433 3566788888888888888888887776543 33343334444 7777777
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
++.+.....| -++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766666553 2444455555667777777666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.56 Score=35.74 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
..++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3445555555666666666666666553 35556666666666543 2233333331 12333344466666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH
Q 011463 134 NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC 202 (485)
Q Consensus 134 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (485)
+-++++.-++.++.. +...+..+....++++.|.+++.+-. +...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHH
Confidence 666666666655421 11122222222255666666555411 4445555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.43 Score=41.05 Aligned_cols=156 Identities=10% Similarity=-0.133 Sum_probs=104.3
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc-C--CCCCHhhHHHHHHHHHHcCC
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-G--CEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~~ 135 (485)
.+...|++.+|-..++++++.-|. |.-.+...=.+|.-.|+...-...++++... + +|-.......+.-++...|-
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 345678888888888888887654 6677777778888889888888888888654 2 22222222334445567888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC---CCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT---PDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
+++|++.-++..+.+ +.|.-..+.....+-.+ |++.++.++..+-...-.. .-..-|=...-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~-~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMN-GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhc-chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999888888765 34555555666655555 8888888887665443111 112233334455667788999999
Q ss_pred HHHHH
Q 011463 213 LFKEM 217 (485)
Q Consensus 213 ~~~~~ 217 (485)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 98763
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.92 Score=37.77 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDE---GTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
.+.+-|.+.|.+-.|..-+++|++. .+-+. ..+..+..+|.+.|-.++|.+.-.-+-.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4567889999999999999999987 33333 3345567788999999988876544433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.74 Score=35.84 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 106 RVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+..+.+.+.+++|....+..++..+.+.|++....+ +...++-+|.......+-.+. +....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 445555566777788888888888888887654433 334444455544444443322 2233344443344332
Q ss_pred CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 186 GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1113455666777778888887777665332 222334455666666665554445544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.89 Score=36.62 Aligned_cols=84 Identities=13% Similarity=-0.016 Sum_probs=41.4
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (485)
.|-+.-|.--|.+.....|+ -+.+||.+.--+...|+++.|.+.|+...+.+. ....+...-.-++.--|++..|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHH
Confidence 33334444444444444443 355666666666666666666666666666431 1122222222222335566666555
Q ss_pred HHHHHH
Q 011463 143 YRHMRE 148 (485)
Q Consensus 143 ~~~~~~ 148 (485)
+.+.-+
T Consensus 156 ~~~fYQ 161 (297)
T COG4785 156 LLAFYQ 161 (297)
T ss_pred HHHHHh
Confidence 555444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.5 Score=38.75 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... ..+...|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGye------- 241 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYE------- 241 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChH-------
Confidence 44555666677788888877766654 46788888888888888888877665432 11224444
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
.++..+... ...+|..+..++ .+..-+..|.+.|++.+|.+..-+.
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 666676666 677777766652 1245566778888888887764443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.49 Score=41.21 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE--EN----QLKLAFRFYRHMREIGI---QPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~ 171 (485)
+++.+.+++.+.+.|+..+..+|.+....... .. ...++..+|+.|++... .++...+..++.. .. ++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~-~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS-ED 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc-cc
Confidence 34566788888998888887776554433333 22 35678889999988752 3455556666544 22 44
Q ss_pred h----HHHHHHHHhhhhCCCCCCH--HhHHHHHHHHHHcCC--HhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 011463 172 M----DAAFKIFREMPNRGCTPDS--YTYGTLINGLCRLGK--IYEAKELFKEMETKACSPTVVTYTSLINGL 236 (485)
Q Consensus 172 ~----~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 236 (485)
. +.+..+|+.+.+.|+..+. ...+.++..+..... ...+.++++.+.+.|+++....|..+.-..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3 4566777777776665432 333333333322222 346777788888887777766666554433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.029 Score=32.47 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
+|..+..+|...|++++|.++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1.3 Score=37.03 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCCccchhcccc
Q 011463 460 QAAELLLLELMNKCVEAEVDIQNQ 483 (485)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
+...++-.++-.+.....++..||
T Consensus 380 dV~~LLV~~ILD~~i~g~Ide~n~ 403 (440)
T KOG1464|consen 380 DVESLLVSCILDDTIDGRIDEVNQ 403 (440)
T ss_pred HHHHHHHHHHhccccccchHHhhh
Confidence 444555555544444444444443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.7 Score=40.64 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.... ..-|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~------- 748 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL------- 748 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch-------
Confidence 34444555566677777776665554 46666676667777777777766655544321 22333
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIV 430 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 430 (485)
..+..|.+. +.++|.+++-+.... .....+|.+.|++.+|.++-
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 555555555 666666665544322 13455666666666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.7 Score=37.72 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=74.2
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHH-----hHHHHHHHHHhcC-CcchHHHHHHHHhhc----C----CCCCH---
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNS-----TFSLMISKLVSAN-QFRPAEDLLDRVNKE----K----CDITE--- 85 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~~--- 85 (485)
.++||.+.|...+.++..... ...|+.. .+..++......+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 468999999999999984322 2233321 2333344455666 888888877766543 1 11222
Q ss_pred --HHHHHHHHHHhccCChh---hHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 86 --DIFLSICRGYGRVHRPL---DAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 86 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.++..++.+|...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34556666776666554 344444445332 2333555556666666677777777777777764
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.9 Score=39.23 Aligned_cols=157 Identities=11% Similarity=-0.046 Sum_probs=109.5
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HH-HHHHHHHHhcCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVA--SL-NVLIKALCKNSG 170 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~ll~~~~~~~~ 170 (485)
...-.|++.+|...++++++. .|.|..++...=.+|.-.|+...-...++++.-. -.++.. .| +-+........|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 344678999999999999875 5677888888888999999999999999988754 113332 22 222222223349
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHccCCHHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS---PTVVTYTSLINGLCQSKSVEEAMR 247 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~ 247 (485)
-+++|++.-++..+.+.. |.....++...+--.|++.++.++..+-...--. .-..-|=-..-.+...+.++.|+.
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999998887533 7777788888888999999999887764322100 011122223334566689999999
Q ss_pred HHHHHH
Q 011463 248 LFEEMR 253 (485)
Q Consensus 248 ~~~~~~ 253 (485)
+|+.-.
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.16 E-value=2.6 Score=38.83 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMISKRHR-PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
..+..++-+.|+.++|.+.++++.+.... ....+...|+.++...+.+.++..++.+..+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44555556677777777777776654222 12335556667777777777777777665543
|
The molecular function of this protein is uncertain. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.9 Score=40.60 Aligned_cols=231 Identities=16% Similarity=0.099 Sum_probs=123.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHH-HHHcCCChHHHHHHHHHHHhC----CCCCChhhHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEPNVF-------TYSSLMD-GLCKGGCSSQAMELLQMMISK----RHRPNIVTYSTLL 303 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 303 (485)
.....++.+|..+..++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678999999888876542222221 2333222 234578999999998888765 1233455666777
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHh---HHHH--HHHHHhcCCHH--HHHHHHHHHHHCCCCCCcccccchhhhH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGL---YGKI--ISCFCDIGKYQ--EAANFLDEMVLGGITPNRLTWSLHIRIH 376 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+...|+.. +....+....... -+....-.+...+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~-l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH-LEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhcccchhHHHHH
Confidence 778889999999998887655421223322 2222 23355666332 2333333332210 01111111112233
Q ss_pred HHHHHHHhcC--ChhHHHHHHHHHHhCCCccchhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CChhhHHHH
Q 011463 377 NTVVQGLCKT--DPNRAFQVYLSMRNRSISVDSLT--YSSLITCFCKKGDIHKSARIVDELVLDGCL----PDEGTWSAV 448 (485)
Q Consensus 377 ~~l~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~l 448 (485)
..+...+.+. ...++..-++-.....+.|-... +..|+......|+.++|...+.++...... ++...-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3444444443 22223322332222222222222 236778888999999999999988765322 333333333
Q ss_pred HHHH--HhcCcHHHHHHHHHH
Q 011463 449 MTAL--WDRRKMRQAAELLLL 467 (485)
Q Consensus 449 ~~~~--~~~g~~~~A~~~~~~ 467 (485)
+... ...|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 3332 367898888877665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.9 Score=33.32 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=78.6
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+ ..|...-.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~---------------- 70 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCG---------------- 70 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S----------------
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhc----------------
Confidence 3456677777777776653 2444455555444444444444555544422 11111100
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
+......-+-. .+ .+....+..++.....|+-+.-.+++..+.+.+ .++......+..||.+.|+..++-+++.
T Consensus 71 NlKrVi~C~~~---~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 71 NLKRVIECYAK---RN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -THHHHHHHHH---TT-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHH---hc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 12222221111 11 145667778888899999999999999987543 6788888889999999999999999999
Q ss_pred HHHHcCCCc
Q 011463 467 LELMNKCVE 475 (485)
Q Consensus 467 ~~~~~~~~~ 475 (485)
++-++|...
T Consensus 145 ~ACekG~kE 153 (161)
T PF09205_consen 145 EACEKGLKE 153 (161)
T ss_dssp HHHHTT-HH
T ss_pred HHHHhchHH
Confidence 999988653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.10 E-value=2.7 Score=38.72 Aligned_cols=149 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
.++.-.-+..+.+.-.+.-++..+ +.|+..+.-.++.. .......++.+++++..+.|-. .+..-- .....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s~-~~~~~ 243 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKSQ-FLQHH 243 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchhh-hhhcc
Confidence 445555567777777777777776 34776655555543 1225578888888887765310 100000 00000
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
|. .++........+-..+-..+..++-+.|+.++|++.++++.+.... ........|+.++...+.+.++..+
T Consensus 244 g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 244 GH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred cc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 00 1111111111111222233445555566666666666666543211 1223444556666666666666666
Q ss_pred HHHHH
Q 011463 284 LQMMI 288 (485)
Q Consensus 284 ~~~~~ 288 (485)
+.+-.
T Consensus 318 L~kYd 322 (539)
T PF04184_consen 318 LAKYD 322 (539)
T ss_pred HHHhc
Confidence 66543
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.29 Score=41.64 Aligned_cols=81 Identities=14% Similarity=0.269 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASLN 159 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 159 (485)
..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567778888888888888888888888765 55778888888888888888888888887764 57888877777
Q ss_pred HHHHHHH
Q 011463 160 VLIKALC 166 (485)
Q Consensus 160 ~ll~~~~ 166 (485)
.......
T Consensus 232 ~y~~~~~ 238 (280)
T COG3629 232 LYEEILR 238 (280)
T ss_pred HHHHHhc
Confidence 7666643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.07 Score=29.19 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+|..+...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888888888888888888553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.58 Score=39.29 Aligned_cols=103 Identities=15% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCHHhHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 47 RHDNSTFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
..|-.+|...+..+.. .+..+-....+..|.+.|+..|..+|+.|+..+-+-.-... .+|++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~----------- 130 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQK----------- 130 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHH-----------
Confidence 4455555555555533 23444455555666666666666666666665543211100 00000
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
..-.| -.+-+-++.++++|...|+.||..+-..++..+.+.
T Consensus 131 ----~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 131 ----VFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred ----HHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 00001 112334566677777777777777666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.78 E-value=1 Score=34.55 Aligned_cols=89 Identities=13% Similarity=-0.085 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 466 (485)
+.+++..++..+.-..+. ....-..-...+...|++.+|+++|+++.+. .|....-..++..|....+-..=..+-+
T Consensus 25 ~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~A~ 101 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRYAD 101 (160)
T ss_pred ChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHHHH
Confidence 888999999988877554 2333333445678899999999999998876 4555545555555544333223344445
Q ss_pred HHHHcCCCccch
Q 011463 467 LELMNKCVEAEV 478 (485)
Q Consensus 467 ~~~~~~~~~~~~ 478 (485)
++++.+..+..+
T Consensus 102 evle~~~d~~a~ 113 (160)
T PF09613_consen 102 EVLESGADPDAR 113 (160)
T ss_pred HHHhcCCChHHH
Confidence 556655444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.044 Score=29.53 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=18.6
Q ss_pred HHHHHhCCCccchhhHHHHHHHHHhcCCHHHHH
Q 011463 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSA 427 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 427 (485)
|++.++..+. ++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444444 5666666666666666666654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.8 Score=39.98 Aligned_cols=231 Identities=10% Similarity=0.081 Sum_probs=122.0
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHH----hhcC-CCCCHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRV----NKEK-CDITEDIFLSICRG 94 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~ 94 (485)
.-+..+.+..+|+..|.+.+.... .......+|..+..+..+.|.+++++..--.. .+.. ...--..|..+.++
T Consensus 14 ~~Ly~s~~~~~al~~w~~~L~~l~-~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 14 LQLYQSNQTEKALQVWTKVLEKLS-DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HhHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999888773211 00112335667777888888887765543221 1110 00012344455555
Q ss_pred HhccCChhhHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEF-GCEP---TPKSYITVLAILVEENQLKLAFRFYRHMREIGI-----QPCVASLNVLIKAL 165 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ll~~~ 165 (485)
+-+.-++.+++.+-..-... |..| --.....+..+....+.++++++.|+...+..- ......+-.+-..+
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 55555555555544433221 2112 112334455666777778888888887664311 11223455555555
Q ss_pred HhcCCChHHHHHHHHhhhhC----CCCCCHH------hHHHHHHHHHHcCCHhHHHHHHHHHHHC----CCCC-ChhhHH
Q 011463 166 CKNSGTMDAAFKIFREMPNR----GCTPDSY------TYGTLINGLCRLGKIYEAKELFKEMETK----ACSP-TVVTYT 230 (485)
Q Consensus 166 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 230 (485)
.+. .|+++|.-+..+..+. ++. |.. ....+.-++...|...+|.+.-++..+. |-.+ -.....
T Consensus 173 ~~l-~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 173 AQL-KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHH-HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 555 7777776655554332 221 111 1223344556667777776666665332 2111 223345
Q ss_pred HHHHHHHccCCHHHHHHHHHHHH
Q 011463 231 SLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 231 ~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.+.+.|...|+.+.|+.-+++..
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHH
Confidence 56667777777777777666543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.46 Score=37.65 Aligned_cols=90 Identities=12% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCC-----HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHD-----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+-+...|++++|..-|..++. ..|+. ...|..-..++.+.+.++.|++-....++.++. ....+..-..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale----~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE----SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH----hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHH
Confidence 345566666666666666662 22221 123555555666666666666666666665543 33344444556
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
|.+...+++|++-|.++.+.
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.8 Score=33.35 Aligned_cols=71 Identities=18% Similarity=0.045 Sum_probs=37.3
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 133 (485)
-.+.++.+++..+++.+.-..|. ....-..-...+...|++.+|+.+|+.+.+.. |....-..|+..|...
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA 90 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence 34556666666666666555443 22333333344556677777777777765542 3333334444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.053 Score=29.20 Aligned_cols=22 Identities=5% Similarity=0.288 Sum_probs=9.4
Q ss_pred CCHHhHHHHHHHHHhcCCcchH
Q 011463 48 HDNSTFSLMISKLVSANQFRPA 69 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a 69 (485)
.++.+|..+...|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3344444444444444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.23 E-value=2.4 Score=34.27 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
|-+.-|..-|.+..... +.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-+ ++.-.|+++.|.+-+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 33444444444444432 2235667777777788888888888888887764443333333222 233457788777766
Q ss_pred HHHhHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHH
Q 011463 320 DRMKLQGLKPDA--GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396 (485)
Q Consensus 320 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~ 396 (485)
...-... +.|+ ..|--+. -..-++.+|..-+.+--+ ..+...|.. .++..|... ..+...+-..
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~------~iV~~yLgkiS~e~l~~~~~ 223 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGW------NIVEFYLGKISEETLMERLK 223 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhH------HHHHHHHhhccHHHHHHHHH
Confidence 6665543 2222 1222221 123345555544333222 233333430 233333333 3333333222
Q ss_pred HHHhCCC---ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 397 SMRNRSI---SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 397 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
.....+- ..=..+|-.+...+...|+.++|..+|+-.+..
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2211100 001346667888889999999999999998865
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.14 E-value=6.5 Score=38.82 Aligned_cols=186 Identities=14% Similarity=0.150 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHH-hcCCcchHHHHHHHHhhcCCCCCHH-----HHHHHHHHHhccCC
Q 011463 29 NKALVIFDSATAEYANGFRHD--NSTFSLMISKLV-SANQFRPAEDLLDRVNKEKCDITED-----IFLSICRGYGRVHR 100 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~ 100 (485)
..|++.++.+.+ ....+|. ..++..++..+. ...+++.|+..+++.....-.++.. .-..++..+.+.+.
T Consensus 38 ~~ai~CL~~~~~--~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 38 ATAIKCLEAVLK--QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 346777777772 1223332 235666677665 7789999999999876554332222 22345666766666
Q ss_pred hhhHHHHHHHHHhcC--CC--CCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc-CCC
Q 011463 101 PLDAMRVFDKMKEFG--CE--PTPKSYITV-LAILVEENQLKLAFRFYRHMREIG---IQPCVASLNVLIKALCKN-SGT 171 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~--~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~-~~~ 171 (485)
.. |....++..+.- .+ +-...+..+ +..+...+++..|.+.++.+.... ..|....+..++.+.... .+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 55 998888876531 11 112223333 233333479999999998886542 234444444444433321 255
Q ss_pred hHHHHHHHHhhhhCC---------CCCCHHhHHHHHHHH--HHcCCHhHHHHHHHHH
Q 011463 172 MDAAFKIFREMPNRG---------CTPDSYTYGTLINGL--CRLGKIYEAKELFKEM 217 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 217 (485)
.+.+.+.++.+.... -.|...+|..+++.+ ...|++..+...++++
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777776663321 123455666666654 4567776776666655
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.14 Score=27.99 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELV 434 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 434 (485)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999955
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.05 E-value=8.4 Score=39.75 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=14.1
Q ss_pred hHHHHHHHHHccC--CHHHHHHHHHHHH
Q 011463 228 TYTSLINGLCQSK--SVEEAMRLFEEMR 253 (485)
Q Consensus 228 ~~~~ll~~~~~~~--~~~~a~~~~~~~~ 253 (485)
....++.+|.+.+ .+++++.......
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666655 4555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.85 Score=38.94 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=76.0
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+..-....++..+. .-..++..++..+...|+.+.+.+.++++.... +-+...|..++..+.+. |+...|+..|+
T Consensus 137 f~~WV~~~R~~l~e---~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~-g~~~~ai~~y~ 211 (280)
T COG3629 137 FDEWVLEQRRALEE---LFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVN-GRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc-CCchHHHHHHH
Confidence 44444444444332 346678889999999999999999999999875 45778899999999998 99999999998
Q ss_pred hhhh-----CCCCCCHHhHHHHHHHH
Q 011463 181 EMPN-----RGCTPDSYTYGTLINGL 201 (485)
Q Consensus 181 ~~~~-----~~~~~~~~~~~~l~~~~ 201 (485)
.+.+ .|+.|...+........
T Consensus 212 ~l~~~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 212 QLKKTLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HHHHHhhhhcCCCccHHHHHHHHHHh
Confidence 8876 48999988888777763
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.97 E-value=2.3 Score=33.03 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHH
Q 011463 195 GTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
..|.-+-.+.|++.+|.++|..+
T Consensus 171 EALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHH
Confidence 33333334444444444444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.2 Score=32.39 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=5.5
Q ss_pred CCHHHHHHHHHHHH
Q 011463 134 NQLKLAFRFYRHMR 147 (485)
Q Consensus 134 ~~~~~a~~~~~~~~ 147 (485)
+.......+++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333334443333
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.79 Score=38.53 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=60.7
Q ss_pred CHHhHHHHHHHHHHc-----CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 011463 190 DSYTYGTLINGLCRL-----GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTY 264 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 264 (485)
|..+|...+..+... +..+-.-..++.|.+.|+.-|..+|+.|++.+-+..- .|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-HH
Confidence 666666666665433 4455555666677777777777777777766543221 1111 11
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGK 311 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 311 (485)
....-.| -.+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 12334567788888888888888888888888876654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.9 Score=32.61 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
+++++..++..+.-..++ ....-..-...+...|++++|.++|++..+.+
T Consensus 25 d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred CHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 889999999998876554 33333334456788999999999999998873
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.5 Score=31.99 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=33.8
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
...++.+++..+++.+.-..|+ ....-..-...+...|++.+|+.+|+.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4477777777777777665544 2333333334456778888888888877765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.54 E-value=3.1 Score=33.11 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=40.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 413 LITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
|.+.....|.+++|+.+++...+.++.+ .....-..++...|+.++|+..|++.++.+..++.-
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~~ 195 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALESDASPAAR 195 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHHH
Confidence 4556667777888887777666443211 122334567777888888888888888776444433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.25 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.|..+..++...|++++|++.++++++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34455666666666666666666666643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.44 E-value=9.1 Score=38.19 Aligned_cols=227 Identities=17% Similarity=0.104 Sum_probs=125.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCCCHHhHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-------VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTPDSYTYGTLI 198 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 198 (485)
.....++.+|..++.++...--.|+ ...++.+-.......|+++.+.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3467889999999998875422222 1244555444444458999999888776653 2334566777888
Q ss_pred HHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH-----HHHHHccCC--HHHHHHHHHHHHhC---CC---CCCHhhHH
Q 011463 199 NGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL-----INGLCQSKS--VEEAMRLFEEMRSK---GV---EPNVFTYS 265 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~~~--~~~a~~~~~~~~~~---~~---~~~~~~~~ 265 (485)
.+..-.|++++|..+..+..+.....+...+... ...+...|. ..+....|...... .. .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8899999999999888877654323344333222 223455663 23333333333222 01 11233444
Q ss_pred HHHHHHHcC-CChHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHhHCCCCC----CHHhHHHHH
Q 011463 266 SLMDGLCKG-GCSSQAMELLQMMISKRHRPNIVTY--STLLNGLCKEGKLQEAVEILDRMKLQGLKP----DAGLYGKII 338 (485)
Q Consensus 266 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 338 (485)
.++.++.+. +...++..-+.........|-.... ..++......|+.++|...+.++......+ +..+-...+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 555555551 1122222222222222222222222 356777888999999999998876643222 222222222
Q ss_pred --HHHHhcCCHHHHHHHHHH
Q 011463 339 --SCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 339 --~~~~~~~~~~~a~~~~~~ 356 (485)
......|+.+.+.....+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 223467888887776655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.39 E-value=8.2 Score=37.51 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=163.1
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHH-----HHHcCCHhHHHHHHHHHHH-------CCCCCChhhHHHHHHHHHcc
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLING-----LCRLGKIYEAKELFKEMET-------KACSPTVVTYTSLINGLCQS 239 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 239 (485)
...+.++++...+.| +......+..+ +....|.+.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 33333333333 3355789999999998866 44 344566677777764
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hc
Q 011463 240 K-----SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC----KE 309 (485)
Q Consensus 240 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 309 (485)
. +.+.|..++...-+.| .|+...+-..+..... ..+...|.++|..+...|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6778999999998887 3444433222222222 24678999999999988753 22333333332 23
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHH-----Hh
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-----LC 384 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~ 384 (485)
.+.+.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|..--...-. .+... ..
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~-------~l~~~~~~~~~~ 448 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAA-------YLLDQSEEDLFS 448 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHH-------HHHHhccccccc
Confidence 47889999999999987 3332222223333433 67777766666665544321111100 11111 11
Q ss_pred c--C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----
Q 011463 385 K--T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKK----GDIHKSARIVDELVLDGCLPDEGTWSAVMTALW---- 453 (485)
Q Consensus 385 ~--~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 453 (485)
. . +...+...+.+....| +......+.+.|..- .+++.|...+.....++ ....|+ +...+-
T Consensus 449 ~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g 521 (552)
T KOG1550|consen 449 RGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEG 521 (552)
T ss_pred cccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcC
Confidence 1 1 4566777777776655 556666666666543 35788888888888764 334444 222111
Q ss_pred hcCcHHHHHHHHHHHHHcC
Q 011463 454 DRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~ 472 (485)
... +..|.+++.++.+.+
T Consensus 522 ~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 522 IKV-LHLAKRYYDQASEED 539 (552)
T ss_pred cch-hHHHHHHHHHHHhcC
Confidence 223 688888888887754
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.26 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.|..++.++...|++++|+..++++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34555555666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.29 E-value=3.1 Score=32.35 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=85.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCChHHHHHHHHhhhhCCCCCCHH-hH--
Q 011463 119 TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK-ALCKNSGTMDAAFKIFREMPNRGCTPDSY-TY-- 194 (485)
Q Consensus 119 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-- 194 (485)
+...|...+. ++..+..++|+.-|..+.+.|...-+..-..-.. ..... |+...|...|+++-.....|-.. -.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445554444 3456677788888888877664332222222222 23344 88888888888887664333322 11
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
..-...+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++..|...|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11223456778888888877777655444445555667777788899999999999887653333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.5 Score=33.71 Aligned_cols=63 Identities=6% Similarity=0.216 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT--PKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
..+..+...|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677777777777777777777766533222 34456677777777777777777666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.2 Score=35.46 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.++......+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888888776533322 234566677777778888777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.06 E-value=10 Score=37.60 Aligned_cols=148 Identities=15% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
...-+..+.+..-++-|..+-..-. .+.. .......-+.+.|++++|...|-+-... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 3444666677777777777655332 1233 3333444455678888888777665532 122 22444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
-|....+...--.+++.+.+.|+ .+...-..++..|.+. ++.++..++.+... .|... .-....+..+.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKl-kd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKL-KDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHh-cchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHH
Confidence 55566666677777777777775 3455556677777777 77777666665544 22111 11233445555555555
Q ss_pred HHHHHHHH
Q 011463 209 EAKELFKE 216 (485)
Q Consensus 209 ~a~~~~~~ 216 (485)
+|..+-.+
T Consensus 481 ~a~~LA~k 488 (933)
T KOG2114|consen 481 EAELLATK 488 (933)
T ss_pred HHHHHHHH
Confidence 55554444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.25 Score=26.38 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=14.3
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+|..++..+...|++++|++.|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3445555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=5.2 Score=33.36 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=81.2
Q ss_pred CCcchHHHHHHHHhhcCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-CCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 64 NQFRPAEDLLDRVNKEKCDI-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-GCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 64 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444444444444443221 2344555555556666666666666555431 113344445555555555555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHhcCCChHHHHHHHHhhhhCCC--CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIK-ALCKNSGTMDAAFKIFREMPNRGC--TPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
.+.........+.. ....... .+... |+++.+...+........ ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDL-AEALLALGALYEL-GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcch-HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 66665553321111 1111111 23333 556666666555533211 0112222222222344445555555555444
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 219 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
..........+..+...+...++++.+...+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 431110123333333444444444444444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.43 E-value=8.2 Score=34.97 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLP---DEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
...+|..++..+.+.|.++.|...+.++...+..+ ........+..+...|+..+|+..++..++.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55678889999999999999999999988753221 3344455677888999999999999998883
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.8 Score=39.61 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=41.8
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
...|.++|.+++|++.|.......+. ++..+..-..+|.+..++..|..--+.....+ ..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 34455555555555555554444321 44444444445555555554444444333321 11233344444444445555
Q ss_pred HHHHHHHHHHHH
Q 011463 137 KLAFRFYRHMRE 148 (485)
Q Consensus 137 ~~a~~~~~~~~~ 148 (485)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.15 E-value=2.7 Score=36.13 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCc
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG---ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 404 (485)
+....+...++..-....+++.+...+-+++... ..|+...+ ..+..+.+.++++++.++..=++-|+-
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~--------~~irlllky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH--------TWIRLLLKYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH--------HHHHHHHccChHHHHHHHhCcchhccc
Confidence 3333444444444444556666666665554320 11111111 344444444677777766666667777
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
||..+++.+++.+.+.+++.+|.++...|+..
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777777777766665544
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.8 Score=33.88 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc----------chHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF----------RPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
++.|++.++... ...|.|...++.-..++....++ ++|..-|++++..+|. ...++..+..+|..
T Consensus 7 FE~ark~aea~y----~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAY----AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH----HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 456666666655 23366666665555555443222 3444455555555544 34555556655544
Q ss_pred c
Q 011463 98 V 98 (485)
Q Consensus 98 ~ 98 (485)
.
T Consensus 82 ~ 82 (186)
T PF06552_consen 82 L 82 (186)
T ss_dssp H
T ss_pred H
Confidence 3
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.93 E-value=5 Score=31.39 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=10.2
Q ss_pred hCCCCCCHHhHHHHHHHHHHcCC
Q 011463 184 NRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+.+++|+...+..++..+.+.|.
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.79 E-value=14 Score=36.45 Aligned_cols=50 Identities=10% Similarity=-0.043 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CC-----ChhhHHHHHHH--HHhcCcHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELVLDGC-LP-----DEGTWSAVMTA--LWDRRKMRQAAELLL 466 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~~~--~~~~g~~~~A~~~~~ 466 (485)
.+-.|++..|....+.+.+..- .| ....+..++.+ +...|+.+.|...|.
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456888889888888876411 11 12233344443 336689999999997
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.4 Score=25.50 Aligned_cols=27 Identities=4% Similarity=0.114 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+..+...+...|++++|++.|++....
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444444555555555555444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.72 E-value=6.9 Score=32.57 Aligned_cols=198 Identities=23% Similarity=0.181 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHH-H
Q 011463 158 LNVLIKALCKNSGTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLIN-G 235 (485)
Q Consensus 158 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~-~ 235 (485)
.......+... +.+..+...+...... ........+......+...+++..+.+.+.........+ ......... +
T Consensus 62 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 62 LLLLALALLKL-GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHc-ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 33333333343 5555555555554431 112234444445555555555566666665555432221 111122222 4
Q ss_pred HHccCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGV--EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 5566666666666666544211 01222233333334556667777777766666522213455556666666666777
Q ss_pred HHHHHHHHHhHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 314 EAVEILDRMKLQGLKPD-AGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
.|...+....... |+ ...+......+...+..+.+...+.+...
T Consensus 220 ~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 220 EALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777666542 22 33334444444455567777777666655
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=14 Score=35.98 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=142.4
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHH----H-HhccCChhhHHHHHHHHHh-------cCCCCCHhhHHHHHHHHHHc
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICR----G-YGRVHRPLDAMRVFDKMKE-------FGCEPTPKSYITVLAILVEE 133 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 133 (485)
...|.++++...+.+. ......+.. + +....+.+.|+..|....+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4578888888888753 333322222 2 4466789999999999876 44 444666777777764
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHH----Hc
Q 011463 134 N-----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLC----RL 204 (485)
Q Consensus 134 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 204 (485)
. +.+.|..++.+..+.|. |+.......+........+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 67789999999988873 444433333322222114578999999999988733 33333333332 23
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HH---Hc----CCC
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD-GL---CK----GGC 276 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~----~~~ 276 (485)
.+.+.|..++++.-+.| .|....-...+..+.. ++++.+.-.+..+.+.+.+ ...+-...+. .. .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 46889999999998886 3332333333444544 7777777777777666533 2222121111 11 11 124
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhHCC
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 326 (485)
...+...+.+....| +......+...|.. ..+++.|...+......+
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 455556666555543 34444444444432 234667777776666553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=1.2 Score=38.51 Aligned_cols=92 Identities=11% Similarity=-0.020 Sum_probs=49.3
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
-..-|.+.|.+++|++.|....... +.+++++..-..+|.+...+..|..-....+..+ ..-...|..-..+-... |
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L-g 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL-G 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH-h
Confidence 3445666777777777776665542 2266666666666666666666655555544322 01122333333332233 5
Q ss_pred ChHHHHHHHHhhhhC
Q 011463 171 TMDAAFKIFREMPNR 185 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~ 185 (485)
...+|.+-++..++.
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 666666666665554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.57 Score=26.35 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 443 GTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 443 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.+++.+..+|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777776653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.4 Score=29.21 Aligned_cols=60 Identities=7% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+..+-+..+......|++.+..+.+++|.+.+|+.-|+++|+-...+ +..+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 44555566666777889999999999999999999999999877744 2223445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.56 E-value=3.6 Score=32.88 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=56.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHH
Q 011463 339 SCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417 (485)
Q Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (485)
.-+...|++++|..-|.+.+.. -|...+-...+ +|..-..++.+. ..+.|+.-..+.++.++. ....+.--..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsI-ly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSI-LYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHH-HHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHH
Confidence 3456788999999999888874 23322211001 111222233333 556666666666666443 223333334567
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChh
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPDEG 443 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~~~ 443 (485)
.+...+++|++-|+++.+. .|...
T Consensus 179 ek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHh--CcchH
Confidence 7777888888888888875 45544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=14 Score=34.01 Aligned_cols=128 Identities=12% Similarity=0.059 Sum_probs=86.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.-+..-...||...|-+-...++ ...+.++.........+...|+++.+...+..+...-. ....+...+++...
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~l----r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~ 368 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAAL----RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHH----HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhh
Confidence 33455556788887766666555 23344444445555667889999999998877655422 25567888888889
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+.|++++|..+-+-|....+. ++..........-..|-++++...++++...+
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999888876543 33333333333445677888888888887654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=32.47 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HhHCCCCCC
Q 011463 257 VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHRPNIVTYSTLLNGLCKEGKLQEAVEILDR-----MKLQGLKPD 330 (485)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~ 330 (485)
..++..+...++..++..+++.+-.+++...... ++..|...|..++......|+..-..++.++ +++.+++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 4566667777788888888888888887776665 5556777788888888888887777666654 234455555
Q ss_pred HHhHHHHHHHH
Q 011463 331 AGLYGKIISCF 341 (485)
Q Consensus 331 ~~~~~~l~~~~ 341 (485)
...-..+-..+
T Consensus 278 ~~L~~~L~~LF 288 (292)
T PF13929_consen 278 DELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHHH
Confidence 55444444333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.37 E-value=4.8 Score=32.10 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHH---hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH--
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS---TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF-- 88 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 88 (485)
.|..++.... .+.+ +.....+++.. .++.+.+ .-..+...+...|+++.|..-++..+... ..+.+
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~----~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~ 126 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQ----ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKA 126 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHh----hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHH
Confidence 3555555554 3444 66666666662 2233433 33445678899999999999999888652 23333
Q ss_pred ---HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 89 ---LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 89 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..|.+.....|.+++|+..++.....+. .......-..++...|+-++|..-|++....+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455678889999999999998776431 23334556688999999999999999999875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.86 Score=24.19 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+|..+...+...|++++|.+.++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45667777888888888888888887754
|
... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.9 Score=37.44 Aligned_cols=117 Identities=15% Similarity=0.013 Sum_probs=69.9
Q ss_pred CChHHHHHHHHhhhhC-CCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNR-GCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
|++..|.+-+....++ .-.|+ ........+...|+++.+...+....+. +.....+...+++.....|++++|...
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 6766665544444443 22233 3333334466678888887777665443 333556677777777888888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
-+-|....++ ++..........-..|-++++...++++...
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7777765444 3333333333344566677777777776554
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.68 E-value=41 Score=38.11 Aligned_cols=318 Identities=14% Similarity=0.059 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
.+..+-.+.+.+.+|+..+|.-.. ...-.. ....|..+...|...++++...-+...-.. +.. +..-+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~--~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRS--TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHH
Confidence 455677889999999999998431 111111 223344444599999999998888775221 222 33344456
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCChHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVL-IKALCKNSGTMDA 174 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~ 174 (485)
...|++..|...|+++.+.+ ++....++.++......|.+....-..+-.... ..+....++.+ +.+..+. ++++.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l-~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRL-SQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhh-cchhh
Confidence 67899999999999999875 445778888888888888888777765555433 23334444433 3333455 88887
Q ss_pred HHHHHHhhhhCCCCCCHHhHHH--HHHHHHHcC--CHhHHHHHHHHHHHCCCCC---------ChhhHHHHHHHHHccCC
Q 011463 175 AFKIFREMPNRGCTPDSYTYGT--LINGLCRLG--KIYEAKELFKEMETKACSP---------TVVTYTSLINGLCQSKS 241 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~ 241 (485)
....+. .. +..+|.. +.....+.. |.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-- 1607 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-- 1607 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH--
Confidence 777765 22 2223322 222222222 2111112333332221111 001222222221111
Q ss_pred HHHHHHHHHHHHhCCCCCCH------hhHHHHHHHHHcCCChHHHHHHHHH-HHhCCCC-----CChhhHHHHHHHHHhc
Q 011463 242 VEEAMRLFEEMRSKGVEPNV------FTYSSLMDGLCKGGCSSQAMELLQM-MISKRHR-----PNIVTYSTLLNGLCKE 309 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~ 309 (485)
+-....+... ++.++. .-|..-+..-....+..+-+--+++ +...... --..+|-...+.....
T Consensus 1608 --el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~a 1683 (2382)
T KOG0890|consen 1608 --ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLA 1683 (2382)
T ss_pred --HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhc
Confidence 1111111111 112211 1121122211111122222222222 1111111 1345677777778889
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
|.++.|...+-...+.+ -+..+...+...-..|+...|+.++++..+..
T Consensus 1684 G~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1684 GHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 99999988877777664 34556667777888999999999999988654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.61 E-value=1.9 Score=29.67 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
|.=++.+-++.+...++.|+.....+.++||.+.+++.-|+++++-+..+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 444667777788888889999999999999999999999999999777554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.51 E-value=7 Score=33.75 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=78.7
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHH----------CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHhh
Q 011463 197 LINGLCRLGKIYEAKELFKEMET----------KACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG---VEPNVFT 263 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 263 (485)
|.++|.....|+.-....-++-. .|.+....+...++..-....+++.+...+-+++... ..++. +
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-T 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-c
Confidence 45566666666554433322221 2344455566666666666677888888777776431 11111 1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 326 (485)
-.+.++.+.+ -++++++.++..=++-|+-||.++++.+++.+.+.+++.+|..+...|....
T Consensus 104 ~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1223333332 3566888888777788888888888888888888888888888777766543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.46 E-value=23 Score=34.94 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCC---CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRH---DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.-+.+.+.+++|+..-+... +..+ -.......+..+...|++++|-...-.|... +...|...+..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~-----~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI-----GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc-----CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHh
Confidence 344778889999999887765 4444 3446777788889999999999999888864 667788888777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...+..... +.-++......++..|..++..+..
T Consensus 434 ~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 434 AELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccccccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 777765443 3333433223467778888877766
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.29 E-value=15 Score=35.10 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=32.4
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 55555554443322 334455555555555555555555544332 233444444444444444444
Q ss_pred HHHHhC
Q 011463 250 EEMRSK 255 (485)
Q Consensus 250 ~~~~~~ 255 (485)
....+.
T Consensus 716 ~~~~~~ 721 (794)
T KOG0276|consen 716 SLAKKQ 721 (794)
T ss_pred HHHHhh
Confidence 433333
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.28 E-value=1 Score=25.25 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788899999999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.27 E-value=30 Score=36.04 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=41.6
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHh--HHHHHHHHHhcCCH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGL--YGKIISCFCDIGKY 347 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~ 347 (485)
.+...+.+++|.-.|+..-+. ...+.+|...|++.+|..+..++... .+... -..|..-+...+++
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 334455566665555543221 23455666667777777666655421 12221 14455566666777
Q ss_pred HHHHHHHHHHH
Q 011463 348 QEAANFLDEMV 358 (485)
Q Consensus 348 ~~a~~~~~~~~ 358 (485)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 66666666654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.12 E-value=1 Score=23.54 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=14.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 448 VMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..++.+.|++++|.+.++++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445555566666666666666654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.03 E-value=0.7 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=18.7
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 447 AVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 447 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
.+..+|...|+.+.|++++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777777777777654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.88 E-value=14 Score=31.54 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=74.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCC--CCCCHH--------hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHH
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANG--FRHDNS--------TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIF 88 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 88 (485)
++.+.-..|+..|++..++..+..... ...+.. ....-|.+++..+++.++..+.-+--...-+....+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 455666788888888888777433110 111111 1222367778888888877766555444333455666
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH-----HHcCCHHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL-----VEENQLKLAFRFY 143 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~ 143 (485)
..-|-.|.|.+.+..+.++-......--..+...|..++..| .-.|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 666777888888888888777776531112233355555444 3467777777776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.76 E-value=6.4 Score=27.55 Aligned_cols=39 Identities=8% Similarity=0.074 Sum_probs=14.9
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 249 FEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+..+...++.|++....+.+++|.+.+++..|.++++-+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333344444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.18 E-value=7 Score=27.34 Aligned_cols=63 Identities=8% Similarity=0.110 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+.-+..+-+..+......|++.+..+.+++|.+.+++..|+++|+-...+ +.+....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33445556666667778889999999999999999999999999888765 2333336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.12 E-value=12 Score=30.14 Aligned_cols=80 Identities=11% Similarity=0.058 Sum_probs=62.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCcH
Q 011463 382 GLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD---GCLPDEGTWSAVMTALWDRRKM 458 (485)
Q Consensus 382 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 458 (485)
.+.+.+-+.|.+.|-.+...+.--++...-.|...|. ..+.++++.++-+..+. +-.+|...+..|+..+.+.|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 3344478899999999987765546666666665554 67999999999998875 3367888999999999999999
Q ss_pred HHHH
Q 011463 459 RQAA 462 (485)
Q Consensus 459 ~~A~ 462 (485)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.04 E-value=16 Score=31.39 Aligned_cols=136 Identities=11% Similarity=0.078 Sum_probs=77.8
Q ss_pred CChHHHHHHHHhhhh-CCCCCCHHhHHHHHHHHHH-cCC-HhHHHHHHHHHH-HCCCCCChhhHHHHHHHHHccCCHHHH
Q 011463 170 GTMDAAFKIFREMPN-RGCTPDSYTYGTLINGLCR-LGK-IYEAKELFKEME-TKACSPTVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a 245 (485)
..+.+|+++|+.... ..+-.|..+...+++.... .+. ...--++.+-+. ..+..++..+...++..+++.+++...
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 455667777763322 1233466666666666655 221 111122222222 223456666777777888888888888
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHHHcCCChHHHHHHHHH-----HHhCCCCCChhhHHHHHHH
Q 011463 246 MRLFEEMRSK-GVEPNVFTYSSLMDGLCKGGCSSQAMELLQM-----MISKRHRPNIVTYSTLLNG 305 (485)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~ 305 (485)
.++++..... +...|...|..++......|+..-..++... +.+.++..+...-..+-..
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 8877776654 4555777788888888888877766666554 2233454454444444333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.97 E-value=0.7 Score=24.24 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=10.0
Q ss_pred HHHHHhcCCcchHHHHHHHHhhc
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+.++.+.|++++|.+.|+++++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33444444444444444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.73 E-value=15 Score=30.48 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011463 336 KIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNR 401 (485)
Q Consensus 336 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 401 (485)
.+...-+..+++.+|+++|+++....+..+..-|..--.++.+.+..+++.+.-.+...+++..+.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 334444567888899999998877655555444443333333444445544444445555555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.61 E-value=9.7 Score=30.73 Aligned_cols=72 Identities=13% Similarity=-0.039 Sum_probs=38.0
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK---ACSPTVVTYTSLINGLCQSKSVEEA 245 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~~~~~~a 245 (485)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+..|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555555443334444444444443 45556666665555433 2244556666666666666666555
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.47 E-value=32 Score=34.09 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011463 417 FCKKGDIHKSARIVDELV 434 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~ 434 (485)
+...|++++|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 356788888888777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.56 Score=40.59 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=36.3
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcCCHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT-PKSYITVLAILVEENQLKLAF 140 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 140 (485)
..|.++.|++.|-..++.++. ....+..-..++.+.+++..|+.=++...+.+ || ...|-.--.+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 344444444444444444322 33333444444444444444444444444421 22 122222222233344455555
Q ss_pred HHHHHHHHcCC
Q 011463 141 RFYRHMREIGI 151 (485)
Q Consensus 141 ~~~~~~~~~~~ 151 (485)
..++...+.++
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 55555444443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.20 E-value=18 Score=31.04 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+++...+.|..+|.+.+|.++.++.+..+ +.+...+..++..+...|+--.|.+.++++-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 45566778889999999999999988763 45666677788888999998888877776643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.88 E-value=10 Score=36.06 Aligned_cols=132 Identities=11% Similarity=0.091 Sum_probs=91.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++.-+.++|-.++|+++ .+|+.- -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 618 t~va~Fle~~g~~e~AL~~------------s~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALEL------------STDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhHHhHhhhccchHhhhhc------------CCChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3455556666666655543 233322 2344568899999998877653 566799999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
.+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|. +...+ .++... |+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~--~N~AF----~~~~l~-g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK--NNLAF----LAYFLS-GDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc--cchHH----HHHHHc-CCHHHH
Confidence 999999999999987764 45677777888888877777777777762 22222 233344 999999
Q ss_pred HHHHHhhhh
Q 011463 176 FKIFREMPN 184 (485)
Q Consensus 176 ~~~~~~~~~ 184 (485)
.+++..-.+
T Consensus 741 ~~lLi~t~r 749 (794)
T KOG0276|consen 741 LELLISTQR 749 (794)
T ss_pred HHHHHhcCc
Confidence 988876543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.50 E-value=0.61 Score=35.68 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 011463 162 IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 162 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 241 (485)
+..+.+. +.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 14 i~~~~~~-~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 14 ISAFEER-NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp HHHCTTT-T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHhC-CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 3333343 666666677777766554456667777777777776666666665521 11233445556666666
Q ss_pred HHHHHHHHHHH
Q 011463 242 VEEAMRLFEEM 252 (485)
Q Consensus 242 ~~~a~~~~~~~ 252 (485)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=4.6 Score=32.85 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC--CCCCHhhHHHHHHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG--CEPTPKSYITVLAI 129 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 129 (485)
...++.+.+.++..+|+...+.-.+.+|. +...-..+++.++-.|++++|..-++-.-+.. ..+....|..++.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667777777777777777666554 55666677777777788877776666554431 12334455555544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.30 E-value=24 Score=31.52 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=69.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCC------------cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQ------------FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
..|.|+.+|..++...-..-. .+.-+.+++++++.++. +...+...+..+.+..+.++..+.++++.
T Consensus 14 ~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 14 ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 447788888888765543322 24556778888888664 77788888888888888888888888888
Q ss_pred hcCCCCCHhhHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 011463 113 EFGCEPTPKSYITVLAILVE---ENQLKLAFRFYRHMRE 148 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 148 (485)
... +-+...|...+..... .-.+.....+|.+..+
T Consensus 93 ~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 93 FKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 763 3467777777766544 2245566666665543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.4 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011463 408 LTYSSLITCFCKKGDIHKSARIVDELVLD 436 (485)
Q Consensus 408 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 436 (485)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35778889999999999999999998864
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.87 E-value=27 Score=31.63 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=45.6
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP---TVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
...+|..+++.+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677888888888888888888888877643211 233344445566667888888888877776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=24 Score=30.75 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTA 451 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 451 (485)
..+.++...|+. +|+..+.++.+. .||..+-...+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 344555555553 455555555543 3344444443333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.50 E-value=1.6 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=9.9
Q ss_pred HHHHHHhcCcHHHHHHHHH
Q 011463 448 VMTALWDRRKMRQAAELLL 466 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~ 466 (485)
+..++...|++++|...++
T Consensus 7 la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 4445555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.05 E-value=0.45 Score=36.40 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=52.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 35556667777777777777776655556777777888888777767776666511 11333455566666666
Q ss_pred HHHHHHHHHHH
Q 011463 136 LKLAFRFYRHM 146 (485)
Q Consensus 136 ~~~a~~~~~~~ 146 (485)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.05 E-value=24 Score=30.37 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=46.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..+...|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34555677888888888888888888764 55777788888888888887777777766543
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.05 E-value=2.2 Score=39.01 Aligned_cols=107 Identities=9% Similarity=-0.030 Sum_probs=73.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.-+..+...++++.|+.++.+++ .--+.....|..-..++.+.+++..|+.=+..+++..+. ....|..-..++.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI----~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAI----ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVM 83 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHH----hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHH
Confidence 34555677888888888888888 222334555666667788888888888888888887643 3444555556666
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
+.+.+.+|+..|+..... .|+..-....+.-|
T Consensus 84 ~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred hHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 677777888888777663 57766666666554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.97 E-value=23 Score=30.01 Aligned_cols=89 Identities=10% Similarity=0.022 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIH-KSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+..+-++.+.++.+.+++ |-.+|..-=......|++. .-+++.+.|.... ..+...|..--+++...+.++.-..+.
T Consensus 93 dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~ 170 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYA 170 (318)
T ss_pred HHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHH
Confidence 445555566666655554 5555544333333445554 5556666666532 345556666666666666666666666
Q ss_pred HHHHHcCCCccc
Q 011463 466 LLELMNKCVEAE 477 (485)
Q Consensus 466 ~~~~~~~~~~~~ 477 (485)
.++++.+..+.+
T Consensus 171 ~~Lle~Di~NNS 182 (318)
T KOG0530|consen 171 DELLEEDIRNNS 182 (318)
T ss_pred HHHHHHhhhccc
Confidence 666666554443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.93 E-value=29 Score=30.47 Aligned_cols=20 Identities=20% Similarity=0.597 Sum_probs=9.4
Q ss_pred HHHHHHhhhhCCCCCCHHhH
Q 011463 175 AFKIFREMPNRGCTPDSYTY 194 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~ 194 (485)
...+++.+.+.|+.-+..+|
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred HHHHHHHHHHhccCccChHH
Confidence 34444555555554444333
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.86 E-value=24 Score=29.41 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=67.2
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTP-KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
|....++..|+..|.+.+.. .|+. .-|..-+.++.+.++++.+.+--.+.++ +.|+..--...+.........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 34445667777777666654 3555 4446666677777777777776666666 44666666666655554446777
Q ss_pred HHHHHHHhhhhC----CCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 174 AAFKIFREMPNR----GCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 174 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
.|+..+.+.... .+++.......|..+--+.-...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 777777766332 233344445555544333333344444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.57 E-value=2.8 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.570 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
.+..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36789999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.47 E-value=14 Score=29.19 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=57.1
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc---cCC-------hhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcC
Q 011463 66 FRPAEDLLDRVNKEKCDITEDIFLSICRGYGR---VHR-------PLDAMRVFDKMKEFGCEPT-PKSYITVLAILVEEN 134 (485)
Q Consensus 66 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-------~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 134 (485)
++.|.+.++.....+|. |...++.-..++.. ... +++|+.-|++.+.. .|+ ..++..+..++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 45667777776666554 56655544443332 222 34555555555554 354 466666666665433
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 135 ----Q-------LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 135 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+ +++|.+.|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-------hhHHHHHHHHHH
Confidence 2 45566666666653 488888888777642 244455555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.27 E-value=27 Score=29.88 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhh-------HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKS-------YITVLAILVEENQLKLAFRFYRHMREI----GIQPCVASLN 159 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 159 (485)
+.+-..+.+++++|+..+.++...|+..+..+ ...+...|...|+.....+......+. .-+-......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhH-----HHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 160 VLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY-----GTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 160 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+++..+......++..+.+.....+....-..... ..++..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.71 E-value=35 Score=30.49 Aligned_cols=121 Identities=10% Similarity=0.068 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh---cCC
Q 011463 347 YQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---KGD 422 (485)
Q Consensus 347 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 422 (485)
.+.-+.+++++++. .|+..... -.++..+.+. +.+...+.++++....+. +...|...+..... .-.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~------l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~ 117 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLL------LGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFT 117 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCc
Confidence 45567788888776 34443322 2555555555 888888899999987655 78888888876654 235
Q ss_pred HHHHHHHHHHHHhC------CC------CCC--h---hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 423 IHKSARIVDELVLD------GC------LPD--E---GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 423 ~~~a~~~~~~~~~~------~~------~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+++...+|.+.++. +. .++ . ..+..+...+.+.|-.+.|+..++-+++.+...|
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCc
Confidence 67777777666543 11 011 1 1222334445689999999999999999987443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.06 E-value=29 Score=29.00 Aligned_cols=82 Identities=11% Similarity=0.069 Sum_probs=39.7
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCH-HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDN-STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
....+..|+.-|.+++ ...|++ .-|..-+..+.+..+++.+..--.+.++..+. .+-....+.........++
T Consensus 22 ~~k~y~~ai~~y~raI-----~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAI-----CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred chhhhchHHHHHHHHH-----hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhcccc
Confidence 3445555555555555 122332 34455555555555555555555555544322 2223333444444555555
Q ss_pred hHHHHHHHH
Q 011463 103 DAMRVFDKM 111 (485)
Q Consensus 103 ~a~~~~~~~ 111 (485)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555555554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.64 E-value=11 Score=32.45 Aligned_cols=71 Identities=8% Similarity=-0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhcc
Q 011463 410 YSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDIQ 481 (485)
Q Consensus 410 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 481 (485)
.+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--+-.|.+.|.+..|..-++.-++..+.++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3455667788889999999988888752 3344456666777888899999988888888888777776553
|
|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=81.63 E-value=4.2 Score=25.61 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
++..++.+.+... +=|......++.+|...|++++|.++++++.+.
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444444332 234444555677777777777777777766553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.91 E-value=3.8 Score=20.54 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 445 WSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 445 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+..+...+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444555555566666655555554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=80.88 E-value=11 Score=26.17 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=15.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 448 VMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 448 l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+.......|++++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667777777777776654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.79 E-value=17 Score=29.78 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhh
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
++.+.+.++..+++...+.-++.+ +.+...-..++..++-. |++++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcva-Gdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVA-GDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhc-chHHHHHHHHHHH
Confidence 344444555555555555444433 12333334444444444 5555555444433
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.64 E-value=30 Score=29.62 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=45.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC----- 307 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 307 (485)
|.++++.++|.++....-+--+..-+..+.....-|-.|.+.+.+..+.++-...++..-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 456666666666655443333221122233344445556666777666666666655432223333555554443
Q ss_pred hcCCHHHHHHHH
Q 011463 308 KEGKLQEAVEIL 319 (485)
Q Consensus 308 ~~~~~~~a~~~~ 319 (485)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356677776665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 485 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 95.7 bits (236), Expect = 7e-21
Identities = 28/252 (11%), Positives = 78/252 (30%), Gaps = 5/252 (1%)
Query: 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169
K++ K+ L + ++A R+ P L L++
Sbjct: 47 KLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQE-APGK 105
Query: 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKEL---FKEMETKACSPTV 226
++D + + ++ A L K T+
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL 165
Query: 227 VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAME-LLQ 285
Y +++ G + + +E + + ++ G+ P++ +Y++ + + + + +E L+
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLE 225
Query: 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG 345
M + + + + LL+ + L+ ++ L P K++
Sbjct: 226 QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 346 KYQEAANFLDEM 357
+
Sbjct: 286 GRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 3e-13
Identities = 29/225 (12%), Positives = 67/225 (29%), Gaps = 12/225 (5%)
Query: 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304
A L + R P + L+ +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 305 GLCKEGKLQEAVEILDRMKLQGLK---PDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361
+L A +L Q K +Y ++ + G ++E L + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 362 ITPNRLTWSLHIRIHNTVVQGLCKTDPN-RAFQVYLS-MRNRSISVDSLTYSSLITCFCK 419
+TP+ L+ + +Q + + D + + L M + + +L + L++ +
Sbjct: 196 LTPDLLS-------YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464
+ ++ L LP S ++ ++ + +L
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.1 bits (162), Expect = 6e-12
Identities = 18/166 (10%), Positives = 48/166 (28%)
Query: 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147
F C ++ + V ++ T Y V+ + K ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 148 EIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKI 207
+ G+ P + S ++ + + + +M G + L++ R +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 208 YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253
++ P V + L+ + +L ++
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 5e-10
Identities = 42/325 (12%), Positives = 98/325 (30%), Gaps = 13/325 (4%)
Query: 8 KWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR 67
+ Q+ +L++ V + + +Q
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 68 PAEDLLDRV---NKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124
A LL +++ +T D++ ++ G+ R + + V +K+ G P SY
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 125 TVLAILV-EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183
L + ++ R M + G++ VL+ + + A K+
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-TVLKAVHKVKPTFS 263
Query: 184 NRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVE 243
P L+ + +L ++T C + L + +C SVE
Sbjct: 264 LPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCV-VSVE 322
Query: 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLL 303
+ +E++ +A+ + + + + L
Sbjct: 323 KPTLPSKEVKHARKTLKTLRDQWEK-------ALCRALRETKNRLEREVYEGRFSLYPFL 375
Query: 304 NGLCKEGKLQEAVEILDRMKLQGLK 328
L + ++ +++L + QG
Sbjct: 376 CLLDEREVVRMLLQVLQALPAQGES 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-10
Identities = 64/486 (13%), Positives = 149/486 (30%), Gaps = 123/486 (25%)
Query: 13 ITSAQVLQLIRAEKDVNKALVIFD-------SATAEYANGFRHDNSTFSLMISKLVSANQ 65
++ ++ +I ++ V+ L +F ++ N F L+S +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIK 99
Query: 66 FRPAEDLLDRVN----KEKCDITEDIF--LSICRG--YGRVHRPLDAMR-----VFDKMK 112
+ + +++ +F ++ R Y ++ + L +R + D +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 113 EFGCEPTPKSYITVLAILV---EENQLKLAFR-FYRHMREIGIQPCVASLNVLIKALCKN 168
G K+ +A+ V + Q K+ F+ F+ ++ ++ +++ L
Sbjct: 160 GSG-----KT---WVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQKLLYQ 208
Query: 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--GKIYEA----------KELFKE 216
+D + + ++ L RL K YE + +
Sbjct: 209 ---ID---PNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 217 METKACSPTVVT--YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274
C ++T + + + L S + + S T + L K
Sbjct: 262 FNLS-C-KILLTTRFKQVTDFL----SAATTTHISLDHHSMT-----LTPDEVKSLLLKY 310
Query: 275 -GCS-----SQAME---LLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325
C + + +I++ R + T+ + C KL +E L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD--KLTTIIE----SSLN 364
Query: 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLT--WSLHIR------IHN 377
L+P + F + + +A+ I L+ W I+ ++
Sbjct: 365 VLEPA-----EYRKMFDRLSVFPPSAH---------IPTILLSLIWFDVIKSDVMVVVNK 410
Query: 378 TVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437
L + P +IS+ S+ + + +H+ IVD +
Sbjct: 411 LHKYSLVEKQPK----------ESTISIPSIYLELKVKLE-NEYALHR--SIVDHYNIPK 457
Query: 438 CLPDEG 443
+
Sbjct: 458 TFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 43/249 (17%), Positives = 72/249 (28%), Gaps = 72/249 (28%)
Query: 5 TMFKWSTKITSAQVLQLI-----------RAEKDVNKALVIFDSATAEYANGFRHDNSTF 53
++F S I + +L LI K +LV ST
Sbjct: 379 SVFPPSAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP-----------KESTI 426
Query: 54 SL----MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY-----GRVHRPLDA 104
S+ + K+ N++ ++D N K ++D+ Y G H L
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-H--LKN 483
Query: 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRH-MREIGIQPCVAS--LNVL 161
+ ++M F + L FRF +R + LN L
Sbjct: 484 IEHPERMTLF-----RMVF--------------LDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 162 I------KALCKNSGTMDA---AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212
+C N + A F YT L R+ + E +
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT------DLLRIALMAEDEA 578
Query: 213 LFKEMETKA 221
+F+E +
Sbjct: 579 IFEEAHKQV 587
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 28/175 (16%), Positives = 51/175 (29%), Gaps = 11/175 (6%)
Query: 187 CTPDSYTYGTLINGLCRLGKIYEA-KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEA 245
P+ L + EL +EM + ++ + A
Sbjct: 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120
Query: 246 MRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305
+R + ++ + + L K A + L+ M + +T
Sbjct: 121 LRTLHQGD------SLECMAMTVQILLKLDRLDLARKELKKMQ-DQDEDATLTQLATAWV 173
Query: 306 LCKEG--KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMV 358
G KLQ+A I M P L +C G+++ A L E +
Sbjct: 174 SLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 8e-04
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 24/176 (13%)
Query: 205 GKIYEAKELFKEMETKACS----------PTVVTYTSLINGLCQSKSVEEAMRLFE---E 251
KI EA E + E + Y +K +E+A + E
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 252 MRSKGVEPNVF--TYSSLMDGLCKGGCSSQAMELLQMMIS----KRHRPNIVTYSTLLNG 305
+ + L +A++ ++
Sbjct: 65 AHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124
Query: 306 LCKEGKLQEAVEI----LDRMKLQGLKPDAG-LYGKIISCFCDIGKYQEAANFLDE 356
L + L +AV + + + A L GK K+ EAA L +
Sbjct: 125 LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.74 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.3 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.1 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.96 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.77 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.73 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.73 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.7 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.65 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.58 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.57 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.56 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.51 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.51 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.43 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.36 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.34 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.3 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.25 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.12 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.07 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.96 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.96 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.75 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.38 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.33 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.9 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.9 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.69 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.69 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.61 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.5 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.87 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.76 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.7 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.56 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.39 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.82 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.61 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.37 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.79 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.98 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.57 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.82 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.64 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.57 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.12 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.03 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.02 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.75 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 81.18 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.52 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=314.82 Aligned_cols=439 Identities=9% Similarity=-0.001 Sum_probs=378.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.++.+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD-----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh-----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 46788889999999999999999982 3568788999999999999999999999998654 4588999999999
Q ss_pred HhccCChhhHHHHHHHHHhc---------------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEF---------------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV-ASL 158 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 158 (485)
|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ |+. ..+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHH
Confidence 99999999999999954321 223468899999999999999999999999999865 432 222
Q ss_pred HHH--------------------------------------HHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 159 NVL--------------------------------------IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 159 ~~l--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..+ +..+.+. |++++|.++|+++.+. +++..+++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE-DELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH-HHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc-chHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 222 3333455 8899999999999876 5799999999999
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHH
Q 011463 201 LCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQA 280 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 280 (485)
|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999987653 478889999999999999999999999998764 55788999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 281 MELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.++|+++.+... .+..+|..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999988643 378899999999999999999999999999875 558889999999999999999999999999875
Q ss_pred CCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhC----CCccc--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 361 GITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNR----SISVD--SLTYSSLITCFCKKGDIHKSARIVDEL 433 (485)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 433 (485)
. +.+... ++.+...+... ++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++
T Consensus 471 ~-~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 471 F-QYDPLL-------LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp C-CCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-CCChHH-------HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3 123333 34888888888 999999999999875 55666 689999999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 434 VLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 434 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.+.+ +.+..+|..++.+|.+.|++++|.++++++++.++..+..
T Consensus 543 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 543 LLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp HHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 9874 5578899999999999999999999999999987655443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=299.20 Aligned_cols=425 Identities=11% Similarity=0.042 Sum_probs=354.0
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhh
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLD 103 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (485)
..|.+..+...+.... .+++..|..++..+.+.|++++|..+|+++.... |+..++..++.+|.+.|++++
T Consensus 65 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS-------LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccCccCCCCCccccch-------HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHH
Confidence 3444555555544333 4678899999999999999999999999998654 577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhc
Q 011463 104 AMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI---------------GIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 104 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~ 168 (485)
|..+|+++... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+++.++..+.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999998653 688999999999999999999999999953211 2233578899999999998
Q ss_pred CCChHHHHHHHHhhhhCCCCCCHHhHHHH--------------------------------------HHHHHHcCCHhHH
Q 011463 169 SGTMDAAFKIFREMPNRGCTPDSYTYGTL--------------------------------------INGLCRLGKIYEA 210 (485)
Q Consensus 169 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a 210 (485)
|++++|.++|+++.+.+.. +...+..+ +..|.+.|++++|
T Consensus 214 -g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 214 -SNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp -TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 9999999999999987533 34443333 4456678899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.++|+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+...
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999999875 5799999999999999999999999999999875 447888999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccccc
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWS 370 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (485)
. +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...|.
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 445 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYL 445 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence 4 4478899999999999999999999999998764 4568899999999999999999999999999864 22344444
Q ss_pred chhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hh
Q 011463 371 LHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD--EG 443 (485)
Q Consensus 371 ~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~ 443 (485)
.+...+... ++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..
T Consensus 446 -------~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 446 -------FLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp -------HHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 788888888 999999999999987655 7889999999999999999999999999876 66787 67
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 444 TWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 444 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+|..++.+|.+.|++++|.+.++++++.+...
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999987443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-30 Score=234.21 Aligned_cols=382 Identities=14% Similarity=0.113 Sum_probs=271.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
++..+.+.|++++|++.++.+.. ..|.++..+..+...+...|++++|...++.+.+..+. +...|..+...+.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 45667888889999888888872 33556777778888888888888888888888887654 77888888888888
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.|++++|+..|+++.+.. |.+..+|..+..++...|++++|.+.|+++.+.. |+.......+..+....|++++|.+
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888888764 4456678888888888888888888888888754 5544444333333333388888888
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 257 (485)
.|+++.+..+. +..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 157 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 88888776422 56777788888888888888888888877653 2245667777777777777777777777776653
Q ss_pred CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHH
Q 011463 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337 (485)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (485)
+.+..++..+..++.+.|++++|.+.++++.+..+. ++.++..+..++.+.|++++|...++++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 234666677777777777777777777777765332 45666777777777777777777777776653 4566667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHH
Q 011463 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417 (485)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (485)
...+...|++++|...++++.+. .|+ +..++..++.+|
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------------~~~~~~~l~~~~ 349 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEV--FPE----------------------------------------FAAAHSNLASVL 349 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCC----------------------------------------cHHHHHHHHHHH
Confidence 77777777777777777766542 222 445667777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcC
Q 011463 418 CKKGDIHKSARIVDELVLDGCLP-DEGTWSAVMTALWDRR 456 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 456 (485)
.+.|++++|.+.|+++.+. .| +...+..+...+...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 8888888888888887764 34 3445555555555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-28 Score=225.97 Aligned_cols=367 Identities=16% Similarity=0.121 Sum_probs=283.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
+...+.+.|++++|.+.++.+.+..|. +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 355677888888888888888887655 66777778888888888888888888887764 5577888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
+++|.+.|+++.+.. +.+...+..+...+... |++++|.+.++++.+.++. +...+..+...+...|++++|.+.|+
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888888888888754 22344677777777777 8888888888888776432 45567777778888888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 011463 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295 (485)
Q Consensus 216 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (485)
++.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++....+. +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 887653 2356777788888888888888888888887764 335667777777888888888888888877775332 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhh
Q 011463 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375 (485)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
..++..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...++++.+.. |+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------- 303 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PT---------- 303 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cc----------
Confidence 6677777778888888888888888877764 3456677777777778888888877777776521 21
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 376 HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 376 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 455 (485)
+..++..+...+...|++++|.+.++++.+. .+.+..++..++.++.+.
T Consensus 304 ------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 304 ------------------------------HADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp ------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTT
T ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHc
Confidence 5667888999999999999999999999976 244567888999999999
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 011463 456 RKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~ 474 (485)
|++++|.+.++++++..+.
T Consensus 353 g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHHhhCCC
Confidence 9999999999999986543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-30 Score=238.75 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=143.9
Q ss_pred HHHHHHHHhhcCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC---------HHH
Q 011463 69 AEDLLDRVNKEKCDITE-DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ---------LKL 138 (485)
Q Consensus 69 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 138 (485)
+..+.+.+.+.+....+ ..++.+|.+|++.|++++|+++|++|.+.|++||..+|+.+|.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555444333 34677777777777777777777777777777777777777777766543 567
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 139 AFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
|.++|++|.+.|+.||..+|+.++..+++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777 7777777777777777777777777777777777777777777777777
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 219 TKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 219 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
+.|+.||..+|+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=237.72 Aligned_cols=206 Identities=17% Similarity=0.216 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhcCCCCCHh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC---------h
Q 011463 103 DAMRVFDKMKEFGCEPTPK-SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT---------M 172 (485)
Q Consensus 103 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---------~ 172 (485)
.+..+.+++.+.+..+.+. .++.+|..|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++. +. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~-~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA-EAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-CCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-CchhhhhhcchH
Confidence 4455666676666655544 57888999999999999999999999999999999999999998765 43 6
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+.|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 253 RSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
.+.|+.||..||+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-27 Score=223.05 Aligned_cols=440 Identities=10% Similarity=-0.013 Sum_probs=244.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+...+..+.+.|++++|+..|++++.. .|++.+|..++.++...|++++|.+.++++.+.++. +..++..++.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 345678889999999999999999932 268999999999999999999999999999998765 77899999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHH
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 174 (485)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+......-....... .....
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ-ENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-cCCch
Confidence 999999999999999998875 4455555555555554444444444333222211111111111000000000 01111
Q ss_pred HHHHHHhhhhCC---------CCCCHHhHHHHHHHHHH---cCCHhHHHHHHHHHHH-----CCC--------CCChhhH
Q 011463 175 AFKIFREMPNRG---------CTPDSYTYGTLINGLCR---LGKIYEAKELFKEMET-----KAC--------SPTVVTY 229 (485)
Q Consensus 175 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 229 (485)
...+...+.... .+.+...+......+.. .|++++|...|+++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 111111110000 01123333333333333 5666666666666554 210 1123445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 230 TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE 309 (485)
Q Consensus 230 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (485)
..+...+...|++++|...++.+.+... +...+..+..++...|++++|...++.+..... .+..++..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHh
Confidence 5555556666666666666666655432 255555556666666666666666666655432 2445555566666666
Q ss_pred CCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 310 GKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. |+.. .++..+...+... ++
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~------~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAP------EVPNFFAEILTDKNDF 388 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCS------HHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCH------HHHHHHHHHHHHCCCH
Confidence 66666666666665543 2344555556666666666666666666655432 2211 1122444444444 66
Q ss_pred hHHHHHHHHHHhCCCcc-c----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHH
Q 011463 389 NRAFQVYLSMRNRSISV-D----SLTYSSLITCFCK---KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQ 460 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 460 (485)
++|...++++....+.. + ...+..+..++.. .|++++|...++++.+.. +.+...+..+..++.+.|++++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 66666666655432210 1 2255566666666 666666666666666542 2334455556666666666666
Q ss_pred HHHHHHHHHHcCCCc
Q 011463 461 AAELLLLELMNKCVE 475 (485)
Q Consensus 461 A~~~~~~~~~~~~~~ 475 (485)
|.+.++++++.+...
T Consensus 468 A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 468 AITLFEESADLARTM 482 (514)
T ss_dssp HHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcccc
Confidence 666666666655433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-25 Score=209.48 Aligned_cols=329 Identities=16% Similarity=0.105 Sum_probs=186.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+.+.|++++|+..|+.++. ..|.++.++..++.++...|++++|.+.++++...++. +...+..+..+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh----hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 45567788889999999999999883 33567888999999999999999999999999888765 78888889999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHH------
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI------GIQPCVASLNVLI------ 162 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~ll------ 162 (485)
+...|++++|+..|+.+ .. .|+. ....+..+...+....|...++.+... ...|+.......+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 22 1221 222233445555567778887777542 1123322222111
Q ss_pred -----------------------HHHHhc--------CCChHHHHHHHHhhhhCCCCCC-------HHhHHHHHHHHHHc
Q 011463 163 -----------------------KALCKN--------SGTMDAAFKIFREMPNRGCTPD-------SYTYGTLINGLCRL 204 (485)
Q Consensus 163 -----------------------~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 204 (485)
..+... .|++++|..+++.+.+.... + ..++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhc
Confidence 111110 02445555555555544221 1 11334444455555
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
|++++|...|++..+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5555555555555543 2334455555555555555555555555555442 224445555555555555555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 285 QMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+++.+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 334 ~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 334 QKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555554222 34445555555555555555555555555442 23344555555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-24 Score=198.90 Aligned_cols=321 Identities=11% Similarity=0.046 Sum_probs=250.1
Q ss_pred HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 011463 30 KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 30 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 109 (485)
.+...+..+. ...|.++..+..++..+.+.|++++|..+|+.+....+. +...+..++.++...|++++|+..|+
T Consensus 10 ~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 10 GVDLGTENLY----FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccc----cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444555555 233566778888899999999999999999999887654 78888899999999999999999999
Q ss_pred HHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCCChH
Q 011463 110 KMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVL------------IKALCKNSGTMD 173 (485)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l------------l~~~~~~~~~~~ 173 (485)
++.+.+ +.+..++..+..++...|++++|.+.|+++.+.. |+. ..+..+ ...+... |+++
T Consensus 85 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~ 160 (450)
T 2y4t_A 85 KVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYT 160 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHH
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHH
Confidence 998875 4567888889999999999999999999998754 544 333333 3336666 9999
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+|...++.+.+... .+...+..+..+|.+.|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+.+.
T Consensus 161 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999887643 378889999999999999999999999988753 3467888999999999999999999999998
Q ss_pred hCCCCCCHhhHHHH------------HHHHHcCCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHH
Q 011463 254 SKGVEPNVFTYSSL------------MDGLCKGGCSSQAMELLQMMISKRHRPN----IVTYSTLLNGLCKEGKLQEAVE 317 (485)
Q Consensus 254 ~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 317 (485)
+.. +.+...+..+ ...+.+.|++++|...++.+.+..+. + ...+..+..++.+.|++++|..
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 763 2244444444 77888899999999999998885332 2 3467788888999999999999
Q ss_pred HHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
.++++.... +.+..++..+..+|...|++++|...++++.+. .|+.
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 362 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NEND 362 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccch
Confidence 999987753 457888999999999999999999999999873 4554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-23 Score=192.96 Aligned_cols=313 Identities=12% Similarity=0.078 Sum_probs=262.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+.+.|++++|+..|+.++. ..|.+..++..++.++...|++++|.+.|+++.+.++. +...+..++.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 456678889999999999999999983 34667899999999999999999999999999998765 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCH---hhHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTP---KSYITV------------LAILVEENQLKLAFRFYRHMREIGIQPCVASL 158 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (485)
+|.+.|++++|...|+++.+.+ +.+. ..+..+ ...+...|++++|...|+++.+.. +.+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 9999999999999999999864 3334 555555 444889999999999999999865 3466778
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH------
Q 011463 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL------ 232 (485)
Q Consensus 159 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 232 (485)
..+...+... |++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.... +.+...+..+
T Consensus 181 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 181 ELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 8888888887 99999999999998864 3378899999999999999999999999998753 2244444444
Q ss_pred ------HHHHHccCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 233 ------INGLCQSKSVEEAMRLFEEMRSKGVEPN-----VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 233 ------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
...+...|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...++.+.+.. +.+..++..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998863 33 3478888999999999999999999998864 337889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHH
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (485)
+..+|...|++++|...++++.+.. +-+...+..+..+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 9999999999999999999998864 3356666666533
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-23 Score=198.07 Aligned_cols=411 Identities=10% Similarity=-0.025 Sum_probs=296.3
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
....+...+..+.+.|++++|+..|+++...+ |+...+..++.++.+.|++++|+..++++.+.+ |.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34567888899999999999999999999986 578999999999999999999999999999875 557789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
++...|++++|...|+++.+.+ +++.......+..+... .....+.+.+..+...+..|+......-...........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNK-QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHH-HHHHHHTTC---------------------------CCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999999999876 33444444444444433 233333333322222211111111111111111111111
Q ss_pred HHHHHHHHHHHCCC---------CCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCC--------CCCHhh
Q 011463 209 EAKELFKEMETKAC---------SPTVVTYTSLINGLCQ---SKSVEEAMRLFEEMRS-----KGV--------EPNVFT 263 (485)
Q Consensus 209 ~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~ 263 (485)
....+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 11111111111111 1124444445555554 8999999999999987 311 223567
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
+..+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.... +.+..++..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 788888999999999999999999987544 8888899999999999999999999998874 4577889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCC
Q 011463 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGD 422 (485)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (485)
.|++++|...++++.+.. |+.. .++..+...+... ++++|...++++.+..+. +...+..+...+...|+
T Consensus 317 ~~~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD--PENI------FPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKND 387 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC--SSCS------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHHHhC--hhhH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCC
Confidence 999999999999998854 4321 1233666777777 999999999999886554 67889999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHh---cCcHHHHHHHHHHHHHcCCCcc
Q 011463 423 IHKSARIVDELVLDGC-LPD----EGTWSAVMTALWD---RRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 423 ~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+++|...++++.+..- .++ ...+..++.++.. .|++++|.+.++++++.....+
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 9999999999987521 111 2378888999999 9999999999999999765433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=192.93 Aligned_cols=403 Identities=12% Similarity=0.065 Sum_probs=285.8
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
....+..++..+.+.|++++|.+.|+++....+. +...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3467888899999999999999999999998865 88999999999999999999999999999875 557889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC------CCCCHHh---------
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG------CTPDSYT--------- 193 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~--------- 193 (485)
++...|++++|...|+ ..... |+... ..+..+... +....+...++.+.... ..|+...
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~--~~~~~--~~~~~~~~~-~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLN--GDFDG--ASIEPMLER-NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHH-HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHH-HHhcC--CCCCh--HHHHHHHHH-HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 9999999999999996 43322 33221 112223333 55567787887775531 1122211
Q ss_pred ---------------------HHHHHHHHHHc--------CCHhHHHHHHHHHHHCCCCCC-------hhhHHHHHHHHH
Q 011463 194 ---------------------YGTLINGLCRL--------GKIYEAKELFKEMETKACSPT-------VVTYTSLINGLC 237 (485)
Q Consensus 194 ---------------------~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~ 237 (485)
...+...+... |++++|..+|+++.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 12222222111 3678888888888765322 2 224666667788
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVE 317 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 317 (485)
..|++++|...++.+.+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 888999999999988876 445777888888888999999999999988876433 67788888888889999999999
Q ss_pred HHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHH
Q 011463 318 ILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYL 396 (485)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~ 396 (485)
.++++.+.. +.+...+..+..++...|++++|...++++.+.. |+.. .++..+...+... ++++|...|+
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLP------EVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh------HHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999888764 4456788888888999999999999999888743 4322 1223666666666 8899999998
Q ss_pred HHHhCCCcc-----chhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----Cc
Q 011463 397 SMRNRSISV-----DSLTYSSLITCFCKK----------GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR----RK 457 (485)
Q Consensus 397 ~~~~~~~~~-----~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~ 457 (485)
++.+..+.. ....+.....++... |++++|...|+++.+. .|+.. .....+... |+
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~---~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSE---QAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCH---HHHHHHHHHHHHTTC
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCH---HHHHHHHHHHHHhcc
Confidence 887643221 112234445667777 8999999999998875 34432 233333344 78
Q ss_pred HHHHHHHHHHHHHcCCCccc
Q 011463 458 MRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~ 477 (485)
+++|.+.++++++.....++
T Consensus 478 ~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 478 IDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 88999999999887654443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-20 Score=169.84 Aligned_cols=298 Identities=11% Similarity=0.054 Sum_probs=181.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+..|+.++. ..|.++.++..++..+...|++++|...++++....+. +...+..+...+
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 4566777888888888888888872 33556778888888888888888888888888877654 667788888888
Q ss_pred hccCChhhHHHHHHHHHhcCCC---CCHhhHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCE---PTPKSYITV------------LAILVEENQLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 88888888888888887753 2 234444444 355666667777777766666543 234445555
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHH----------
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYT---------- 230 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 230 (485)
+...+... |++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+... .+...+.
T Consensus 160 ~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 55555555 66666666666666553 22556666666666666666666666666655421 1222221
Q ss_pred --HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 231 --SLINGLCQSKSVEEAMRLFEEMRSKGVEPNV----FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 231 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
.+...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...++.+.+.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1234455556666666666555544211 12 112334455555556666666555555542 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHhHC
Q 011463 305 GLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~ 325 (485)
++...|++++|...++++.+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhc
Confidence 555555666665555555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-20 Score=167.96 Aligned_cols=306 Identities=12% Similarity=0.055 Sum_probs=257.1
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++..+..++..+...|++++|.+.|+++....+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 4567888999999999999999999999998765 78899999999999999999999999998874 457789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHH------------HHHHHhcCCChHHHHHHHHhhhhCCCCCCHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQP---CV-ASLNVL------------IKALCKNSGTMDAAFKIFREMPNRGCTPDSY 192 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~-~~~~~l------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 192 (485)
++...|++++|...++++.+.. | +. ..+..+ ...+... |++++|...++.+.+... .+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEVCV-WDAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC-CchH
Confidence 9999999999999999999854 5 33 333333 3555666 999999999999988753 3788
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHH-------
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYS------- 265 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 265 (485)
.+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHH
Confidence 99999999999999999999999998863 4477889999999999999999999999998763 22333333
Q ss_pred -----HHHHHHHcCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 266 -----SLMDGLCKGGCSSQAMELLQMMISKRHRPNI----VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 266 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
.+...+.+.|++++|...++.+.+.... +. ..+..+..++...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 2366788999999999999999886433 33 234557788999999999999999998864 557889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCc
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNR 366 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 366 (485)
+..++...|++++|...++++.+. .|+.
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 999999999999999999999974 4553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-18 Score=164.33 Aligned_cols=397 Identities=13% Similarity=0.078 Sum_probs=312.6
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCC
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVS----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHR 100 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 100 (485)
..++..++... . +.++.++..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .++
T Consensus 24 ~~~~~~~~~~a---~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 94 (490)
T 2xm6_A 24 NVNLEQLKQKA---E---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQD 94 (490)
T ss_dssp -CCHHHHHHHH---H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred hHHHHHHHHHH---H---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 33456666555 2 3478888888999988 899999999999998863 67788889999988 899
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCCh
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTM 172 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~ 172 (485)
+++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...+.. . +++
T Consensus 95 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~d~ 167 (490)
T 2xm6_A 95 YAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVT-RDY 167 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCH
Confidence 999999999998865 77888888888888 889999999999999876 45556666666655 4 899
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEE 244 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 244 (485)
++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999998875 67888899999988 899999999999998864 56677788888876 789999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHH
Q 011463 245 AMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKE-----GKLQEA 315 (485)
Q Consensus 245 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a 315 (485)
|...|++..+.+ +...+..+...|.. .++.++|..+|++..+.+ ++..+..+...|... +++++|
T Consensus 242 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A 315 (490)
T 2xm6_A 242 SRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQA 315 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHH
Confidence 999999998865 45666777777777 899999999999998764 566777788888877 899999
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc----C-C
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCDIG---KYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----T-D 387 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-~ 387 (485)
...+++..+.+ +...+..+...|...| ++++|.++|++..+.+ +.. ++..+...+.. . +
T Consensus 316 ~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~-------a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 316 ISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKA-------AQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHH-------HHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHH-------HHHHHHHHHHcCCCCCCC
Confidence 99999999875 5667788888887766 7899999999998864 222 22266666666 4 9
Q ss_pred hhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCcHHHH
Q 011463 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCK----KGDIHKSARIVDELVLDGCL-P-DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A 461 (485)
+++|.+.|++..+.+ ++..+..+...|.. .++.++|...|++..+.+.. | +......+...+. .+.++|
T Consensus 383 ~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a 457 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQA 457 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHH
T ss_pred HHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHH
Confidence 999999999999875 56788889999988 89999999999999987532 2 2233333333222 234444
Q ss_pred HHHHHHHHHc
Q 011463 462 AELLLLELMN 471 (485)
Q Consensus 462 ~~~~~~~~~~ 471 (485)
.+...+.+++
T Consensus 458 ~~~a~~~~~~ 467 (490)
T 2xm6_A 458 ELLSQQYIEK 467 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-18 Score=161.48 Aligned_cols=367 Identities=12% Similarity=0.055 Sum_probs=302.5
Q ss_pred chHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHH
Q 011463 67 RPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKL 138 (485)
Q Consensus 67 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 138 (485)
..+.+.+....+. .+...+..+...|.. .+++++|+..|++..+.| ++..+..+...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3445666666554 377888888888888 899999999999998864 77888889999998 999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHH
Q 011463 139 AFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEA 210 (485)
Q Consensus 139 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 210 (485)
|.++|++..+.| +...+..+...+.. . +++++|...|++..+.| +...+..|...|.. .+++++|
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999999876 45556666666665 5 89999999999998875 67788888888887 7899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHH
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAME 282 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 282 (485)
.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999998864 67788888888887 899999999999999875 56677778888875 889999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhc-----CCHHHHHHH
Q 011463 283 LLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDI-----GKYQEAANF 353 (485)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~ 353 (485)
+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|... +++++|..+
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 999998864 56677777778877 899999999999998765 566778888888877 899999999
Q ss_pred HHHHHHCCCCCCcccccchhhhHHHHHHHHhc---C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----cCCHHH
Q 011463 354 LDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK---T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK----KGDIHK 425 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 425 (485)
+++..+.+.. ..+ ..+...+.. . ++++|.+.|++..+.+ ++..+..+...|.. .+++++
T Consensus 319 ~~~a~~~~~~---~a~-------~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 319 YTKSAEQGDA---TAQ-------ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHTTCH---HHH-------HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHhcCCH---HHH-------HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999886521 111 144444443 2 7899999999999874 67888899999988 899999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCC
Q 011463 426 SARIVDELVLDGCLPDEGTWSAVMTALWD----RRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 474 (485)
|.+.|++..+.| +...+..+...|.. .+++++|.++++++++.+..
T Consensus 386 A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999999875 46677778888887 89999999999999998744
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-19 Score=168.28 Aligned_cols=412 Identities=11% Similarity=0.067 Sum_probs=254.3
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+..+|..++.. .+.|++++|..+|++++...|. +...|..++..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 3455555555552 4555566666666665555433 45555555555555566666666666555532 454455444
Q ss_pred HHHH-HHcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCChHHHHHHHHhhhhCCCCCC
Q 011463 127 LAIL-VEENQLKLAFR----FYRHMREI-GIQP-CVASLNVLIKALCK---------NSGTMDAAFKIFREMPNRGCTPD 190 (485)
Q Consensus 127 ~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 190 (485)
+... ...|+.+.|.+ +|++.... |..| +...|...+..... . |+++.|..+|++..+......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN-QRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH-HHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH-hHHHHHHHHHHHHHhchhhhH
Confidence 4322 23344444333 44444332 3222 23333333333222 2 555666666666555211111
Q ss_pred HHhHHHHHHHH-------------HHcCCHhHHHHHHHHHH------HCC---CCCC--------hhhHHHHHHHHHcc-
Q 011463 191 SYTYGTLINGL-------------CRLGKIYEAKELFKEME------TKA---CSPT--------VVTYTSLINGLCQS- 239 (485)
Q Consensus 191 ~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~- 239 (485)
...|....... .+.+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 12222211110 12345666666666532 111 2333 13444444322221
Q ss_pred ---CCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-------CCChH-------HHHHHHHHHHhCCCCCChhh
Q 011463 240 ---KSV----EEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-------GGCSS-------QAMELLQMMISKRHRPNIVT 298 (485)
Q Consensus 240 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 298 (485)
++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++.++.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 46778888888763 4467788888887775 79987 89999999987323346888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC-H-HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhH
Q 011463 299 YSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD-A-GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIH 376 (485)
Q Consensus 299 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (485)
+..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|.++|++..+. .|..... .+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~----~~~ 395 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHV----YVT 395 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHH----HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHH----HHH
Confidence 899999999999999999999999986 443 3 58888888889999999999999999874 3332111 011
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHH
Q 011463 377 NTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPD--EGTWSAVMTALW 453 (485)
Q Consensus 377 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~ 453 (485)
...+......++++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1222222233899999999999886544 67899999999999999999999999999873 2232 337878888888
Q ss_pred hcCcHHHHHHHHHHHHHcCC
Q 011463 454 DRRKMRQAAELLLLELMNKC 473 (485)
Q Consensus 454 ~~g~~~~A~~~~~~~~~~~~ 473 (485)
..|+.+.+..+.+++++.-+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 89999999999999988654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-20 Score=164.42 Aligned_cols=296 Identities=11% Similarity=0.024 Sum_probs=218.5
Q ss_pred CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 45 GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 45 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
..+.++..+..++..+...|++++|.++++++....+. +...+..++..+...|++++|...++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 44566677777788888888888888888888877654 55667777777788888888888888887764 44677778
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 125 TVLAILVEEN-QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 125 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
.+...+...| ++++|.+.|+++.+.. +.+...+..+...+... |++++|...++++.+.... +...+..+...+..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHH
Confidence 8888888888 8888888888887754 23355666666677776 8888888888888776433 45566668888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHcCC
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG--------VEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~ 275 (485)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+..++...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 888888888888887753 3356777888888888888888888888876531 1334567788888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHH-HhcCCHH
Q 011463 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF-CDIGKYQ 348 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 348 (485)
++++|...++.+.+.... +...+..+..++...|++++|...+++..+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888888888888876433 67778888888888899999998888887764 44667777777776 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=162.17 Aligned_cols=290 Identities=13% Similarity=0.039 Sum_probs=243.4
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
-.....+..+...|++++|+++|+.+.. ..|.+...+..++..+...|++++|...++++.+..+. +...+..+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 3455678888999999999999999983 33556777888889999999999999999999998765 778899999
Q ss_pred HHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 93 RGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 93 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
..+...| ++++|...|++..+.. +.+...|..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT-NN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT-TC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH-hh
Confidence 9999999 9999999999998865 4567889999999999999999999999999865 22345566677777777 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC--------CCCChhhHHHHHHHHHccCCHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA--------CSPTVVTYTSLINGLCQSKSVE 243 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~ 243 (485)
+++|...++++.+... .+...+..+...+...|++++|...+++..+.. .+.....+..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999998753 378899999999999999999999999987642 1334678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCCHH
Q 011463 244 EAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGL-CKEGKLQ 313 (485)
Q Consensus 244 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 313 (485)
+|...+++..+.. +.+...+..+..++.+.|++++|.+.++++.+..+ .+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCchh
Confidence 9999999998874 44678889999999999999999999999988643 3677777777777 4555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-20 Score=168.29 Aligned_cols=310 Identities=13% Similarity=0.029 Sum_probs=171.0
Q ss_pred HHccCCHHHHHH-HHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 22 IRAEKDVNKALV-IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 22 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
+...|++++|+. .|+++..........+...+..++..+...|++++|...|+++.+..+. +...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 334566666666 6665552101111112345666666677777777777777777666544 56666666677777777
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+..|+++.+.+ +.+..++..+..++...|++++|.+.++++.+.. |+........ +....
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~------ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAG------ 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhh------
Confidence 777777777766654 3456666666667777777777777777766643 3221111000 00000
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
. .. ....+..+.. +...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 0000111222 226666667777666666542211 35566666666667777777777776666542 33
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC----------C
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK----------P 329 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 329 (485)
+..++..+...+...|++++|...++++.+..+ .+..++..+..+|...|++++|...++++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 456666666777777777777777777666532 25566666777777777777777777766553211 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 330 DAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
...+|..+..++...|++++|..++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1566777777777777777777666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=164.88 Aligned_cols=273 Identities=12% Similarity=0.012 Sum_probs=175.4
Q ss_pred hcCCcchHHH-HHHHHhhcCCC---CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH
Q 011463 62 SANQFRPAED-LLDRVNKEKCD---ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137 (485)
Q Consensus 62 ~~g~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (485)
..|++++|.+ .+++.....+. .+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66655443322 123445566666666677777777776666653 345556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+|...++++.+.. +.+...+..+...+... |++++|...++++.+.... +...+..+... .. .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 6666666666543 22444455555555554 6666666666665554221 11111111000 00 0
Q ss_pred HHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCCh
Q 011463 218 ETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNI 296 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 296 (485)
..+. ..+.. +..+...|++++|...++++.+..... +..++..+...+...|++++|...++++....+ .+.
T Consensus 179 ----~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~ 251 (368)
T 1fch_A 179 ----AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDY 251 (368)
T ss_dssp ------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred ----hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCH
Confidence 0000 01112 233338899999999999998864221 578899999999999999999999999988743 367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999998864 557889999999999999999999999999874
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-17 Score=159.18 Aligned_cols=390 Identities=10% Similarity=0.033 Sum_probs=278.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 011463 73 LDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ 152 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 152 (485)
+++.++.+|. +...|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~P~-~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhCCC-CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 5566666655 88899999984 78899999999999999863 6678899999999999999999999999999854
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHH----HHHhhhhC-CCCC-CHHhHHHHHHHHHH---------cCCHhHHHHHHHHH
Q 011463 153 PCVASLNVLIKALCKNSGTMDAAFK----IFREMPNR-GCTP-DSYTYGTLINGLCR---------LGKIYEAKELFKEM 217 (485)
Q Consensus 153 ~~~~~~~~ll~~~~~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 217 (485)
|+...|...+.......|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7877777777544333377777665 67766543 4333 56778777776655 68899999999999
Q ss_pred HHCCCCCChhhHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------HhhHHHH
Q 011463 218 ETKACSPTVVTYTSLINGL-------------CQSKSVEEAMRLFEEMR------SKG---VEPN--------VFTYSSL 267 (485)
Q Consensus 218 ~~~~~~~~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l 267 (485)
.+.........|....... ...+++..|..++..+. +.. ++|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8731111122333222210 12455777777776532 211 2333 2345444
Q ss_pred HHHHHc----CCCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhHC
Q 011463 268 MDGLCK----GGCS----SQAMELLQMMISKRHRPNIVTYSTLLNGLCK-------EGKLQ-------EAVEILDRMKLQ 325 (485)
Q Consensus 268 ~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 325 (485)
+..... .++. ..+..+|++++... +.++..|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 433322 1233 37788999988863 3377888888888775 78887 899999999863
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCc
Q 011463 326 GLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSIS 404 (485)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~ 404 (485)
-.+.+...|..++..+.+.|++++|..+|+++.+. .|+..+ .++...+..+.+. +.++|.++|++..+..+.
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPT-----LVYIQYMKFARRAEGIKSGRMIFKKAREDART 388 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCch-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 23556889999999999999999999999999984 454321 1223555555556 899999999999986433
Q ss_pred cchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccc
Q 011463 405 VDSLTYSSLITC-FCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAE 477 (485)
Q Consensus 405 ~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (485)
+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|+++++.+..+++
T Consensus 389 -~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 389 -RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp -CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred -chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 33333333322 346899999999999999862 345778889999999999999999999999998655443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=158.31 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=143.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...+..++..+.+.|++++|.+.|+++....+. +..++..+...+...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445777788888888888888888888877655 67788888888888888888888888887764 445777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHhcCCChHHHHHHHHhhhhCCCC-CCHHhHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVAS-----------LNVLIKALCKNSGTMDAAFKIFREMPNRGCT-PDSYTYGT 196 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 196 (485)
++...|++++|...++++.+.. |+... +..+...+... |++++|...++++.+.... .+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CC-HHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 8888888888888888887643 32211 11223333343 6666666666666554322 13555555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGC 276 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 276 (485)
+..++...|++++|.+.|++..+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 6666666666666666666555442 2244455555555555555555555555555442 2234455555555555555
Q ss_pred hHHHHHHHHHHHh
Q 011463 277 SSQAMELLQMMIS 289 (485)
Q Consensus 277 ~~~a~~~~~~~~~ 289 (485)
+++|...++++.+
T Consensus 297 ~~~A~~~~~~al~ 309 (365)
T 4eqf_A 297 YREAVSNFLTALS 309 (365)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-17 Score=154.08 Aligned_cols=390 Identities=15% Similarity=0.025 Sum_probs=224.4
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhc-------CCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-----C
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKE-------KCDI-TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-----G 115 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 115 (485)
....|+.+..++...|++++|++.|++..+. ...| ...+|..+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567889999999999999999999887553 1112 4567888999999999999999999887642 1
Q ss_pred --CCCCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH---HHhcCCChHHHHHHHHhhhhCCC
Q 011463 116 --CEPTPKSYITVLAILVEE--NQLKLAFRFYRHMREIGIQPCVA-SLNVLIKA---LCKNSGTMDAAFKIFREMPNRGC 187 (485)
Q Consensus 116 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~---~~~~~~~~~~a~~~~~~~~~~~~ 187 (485)
......++.....++... +++++|.+.|++..+.. |+.. .+..+... +... ++.++|++.+++..+.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~-~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNW-PPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHS-CCCCCTHHHHHHHHHHCS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhhcCC
Confidence 012345566555555544 46889999999988854 5433 22222222 2334 777888888888877643
Q ss_pred CCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhh
Q 011463 188 TPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263 (485)
Q Consensus 188 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 263 (485)
. +...+..+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+.. +.+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3 56666666555544 456788899988887653 3466778888889999999999999999888763 335556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
+..+..+|...+.. ..... ...........+.++.|...++...+.. +.+..++..+...+..
T Consensus 284 ~~~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 66665554321100 00000 0000001111223566666676666543 3445566667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHH-HhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC
Q 011463 344 IGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQG-LCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG 421 (485)
Q Consensus 344 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (485)
.|++++|...|++..+....|.... .++..+... .... +.++|+..|++..+..+. ..... +
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~---------~ 410 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQ-----LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKE---------K 410 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHH---------H
T ss_pred hccHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHH---------H
Confidence 7777777777777766443322211 011111111 1122 677777777777765332 21111 1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
....+.+++++..+.+ +.+..+|..++.+|...|++++|++.|+++++.+...|+.
T Consensus 411 ~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 2234455555555542 4456677778888888888888888888888877665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-19 Score=158.67 Aligned_cols=266 Identities=11% Similarity=-0.031 Sum_probs=212.7
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
...+..++..+.+.|++++|+..|++++. ..|.+..++..++..+...|++++|.+.|+++....+. +..++..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL----QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMAL 139 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 34477889999999999999999999993 34667899999999999999999999999999998765 78899999
Q ss_pred HHHHhccCChhhHHHHHHHHHhcCCCCCHhhH----------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY----------ITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNV 160 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 160 (485)
...|...|++++|+..|+++.+.. +.+...+ ..+...+...|++++|.+.++++.+.... ++...+..
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 999999999999999999998753 2222233 34578889999999999999999987521 15778888
Q ss_pred HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 011463 161 LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240 (485)
Q Consensus 161 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 240 (485)
+...+... |++++|...++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|
T Consensus 219 l~~~~~~~-g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLS-GEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHH-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 88888888 999999999999998743 378899999999999999999999999998863 335788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCC-----------CCHhhHHHHHHHHHcCCChHHHHHHHHH
Q 011463 241 SVEEAMRLFEEMRSKGVE-----------PNVFTYSSLMDGLCKGGCSSQAMELLQM 286 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 286 (485)
++++|...|+++.+.... .+...|..+..++...|+.+.+......
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998764211 0245566666667777776666655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-17 Score=155.33 Aligned_cols=351 Identities=9% Similarity=-0.094 Sum_probs=226.1
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhc--------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF--------GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG----- 150 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 150 (485)
....|+.+...+...|++++|++.|++..+. .-+....+|..+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567899999999999999999999887542 112345678899999999999999999999876531
Q ss_pred -CCC-CHHHHHHHHHHHHhc-CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH---HHHcCCHhHHHHHHHHHHHCCCCC
Q 011463 151 -IQP-CVASLNVLIKALCKN-SGTMDAAFKIFREMPNRGCTPDSYTYGTLING---LCRLGKIYEAKELFKEMETKACSP 224 (485)
Q Consensus 151 -~~~-~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 224 (485)
..+ ...++.....++... .+++++|...|++..+..+. ++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 233444433333322 25789999999998887433 55566555554 345577788888888887653 22
Q ss_pred ChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHH
Q 011463 225 TVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYS 300 (485)
Q Consensus 225 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 300 (485)
+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...++++.+..+. +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 45555555544443 456778888888887764 446777888888899999999999999998876433 566666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cccccchhhhHHHH
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN-RLTWSLHIRIHNTV 379 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 379 (485)
.+..+|...+... .... ...........+.++.|...+++..+.. |+ ...+. .+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~-------~l 340 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCS-------IL 340 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHH-------HH
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--Cchhhhhh-------hH
Confidence 6665553321111 1100 0001111112334678999999888743 33 33333 66
Q ss_pred HHHHhcC-ChhHHHHHHHHHHhCCCccchh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 380 VQGLCKT-DPNRAFQVYLSMRNRSISVDSL--TYSSLIT-CFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 380 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 455 (485)
...+... ++++|...|++..+..+.+... .+..+.. .....|++++|+..|++..+. .|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~-------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK-------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH--------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH--------
Confidence 6777777 9999999999999876554322 2333332 345789999999999999985 565433322
Q ss_pred CcHHHHHHHHHHHHHcCCC
Q 011463 456 RKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~ 474 (485)
....+.+++++.++.++.
T Consensus 411 -~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp -HHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHHHHHHHHhCCC
Confidence 233445556666665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=153.91 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=126.2
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..++..+...|++++|..+|+++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344566666677777777777777777666544 56666677777777777777777777776653 3456666777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--------------HH--HHhcCCChHHHHHHHHhhhhCCCCCCHHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLI--------------KA--LCKNSGTMDAAFKIFREMPNRGCTPDSYT 193 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--------------~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 193 (485)
+...|++++|.+.++++.+.. |+.......+ .. +... |++++|...++++.+.... +...
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~ 174 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP-NEYRECRTLLHAALEMNPN-DAQL 174 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSH-HHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc-ccHHHHHHHHHHHHhhCCC-CHHH
Confidence 777777777777777776643 3222111111 11 2233 5555555555555544322 4455
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK 273 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 273 (485)
+..+..++...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5555555555555555555555554432 1233444444455555555555555555544432 2233444444444444
Q ss_pred CCChHHHHHHHHHHHh
Q 011463 274 GGCSSQAMELLQMMIS 289 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~ 289 (485)
.|++++|...++++..
T Consensus 253 ~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-18 Score=153.05 Aligned_cols=288 Identities=13% Similarity=0.143 Sum_probs=138.5
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
.++.+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++..+...|
T Consensus 11 ~ll~~~~~ld~A~~fae~~~---------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC
Confidence 44567889999999999876 2358999999999999999999999753 36678999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIF 179 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 179 (485)
++++|+..++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..++..+...|... |.+++|..+|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~-g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDE-KMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC-----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 999999988877764 4567889999999999999999998885 37778999999999998 9999999999
Q ss_pred HhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011463 180 REMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEP 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 259 (485)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VV 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TT
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----Hh
Confidence 977 37999999999999999999999998 27889999999999999999996655442 23
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH-CCCCC------CHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL-QGLKP------DAG 332 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~ 332 (485)
.+.....++..|.+.|.+++|..+++..+... +.....|+-+..+|++- ++++..+.++.... .+++| +..
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44445678899999999999999999998775 44677788887777764 45555555544332 23333 456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 011463 333 LYGKIISCFCDIGKYQEAANFL 354 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~ 354 (485)
.|..+...|...++++.|....
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHH
Confidence 7899999999999999887743
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-18 Score=151.17 Aligned_cols=267 Identities=8% Similarity=-0.070 Sum_probs=219.9
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....+...+..+...|++++|+.+|+.+.. ..+.+..++..++..+...|++++|.+.++++....+. +...+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQ----AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHH
Confidence 445566788899999999999999999983 33567889999999999999999999999999998765 7889999
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV--------------LA-ILVEENQLKLAFRFYRHMREIGIQPCV 155 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ 155 (485)
+...+...|++++|+..++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.. +.+.
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 172 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDA 172 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCH
Confidence 9999999999999999999998864 3334444443 22 3777899999999999999865 3356
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 011463 156 ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLING 235 (485)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 235 (485)
..+..+...+... |++++|...++++.+... .+..++..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus 173 ~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLS-NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 7777788888887 999999999999988743 368889999999999999999999999998763 3467889999999
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHcCCChHHHHHHHHHH
Q 011463 236 LCQSKSVEEAMRLFEEMRSKGVEP-----------NVFTYSSLMDGLCKGGCSSQAMELLQMM 287 (485)
Q Consensus 236 ~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 287 (485)
+...|++++|...++++.+..... +...+..+..++.+.|++++|..+++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999988753221 4667788888888889988888887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-15 Score=149.96 Aligned_cols=397 Identities=12% Similarity=0.141 Sum_probs=225.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
.+...+.|...|++.+|+++++++.-+ ...+..+...-+.++.+.++. +..+..++.++.... + ...+...
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 345678889999999999999999932 111223444444455444433 233333333333211 0 1223333
Q ss_pred HhccCChhhHHHHHHHHHhcC---------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFG---------------------CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (485)
+...|.+++|..+|++..... -.-++.+|..+..++...|++++|...|.+. -
T Consensus 1059 ai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 334444444444444321000 0023555666666666666666666666442 2
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 154 CVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 154 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+...|..+...+.+. |++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++...+..+.
T Consensus 1133 D~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 444555555555555 66666666666555442 22222334566666666655433221 1 23444555566
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
..|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 6666666666666666653 24666666666666666666666655 14566666666666666666
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHH
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 393 (485)
.|......+ ..++..+..++..|.+.|.+++|+.+++..+... +.. +.++.-+...+.+..+++-.+
T Consensus 1268 LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH------~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1268 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAH------MGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhH------hHHHHHHHHHHHhCCHHHHHH
Confidence 666654432 3356677788999999999999999998876532 221 223335666666666655555
Q ss_pred HHHHHHhCC-Ccc------chhhHHHHHHHHHhcCCHHHHHHH-------------HHHHHhCCCCCChhhHHHHHHHHH
Q 011463 394 VYLSMRNRS-ISV------DSLTYSSLITCFCKKGDIHKSARI-------------VDELVLDGCLPDEGTWSAVMTALW 453 (485)
Q Consensus 394 ~~~~~~~~~-~~~------~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~~~~~~~~p~~~~~~~l~~~~~ 453 (485)
.++....+. +++ +...|..+...|.+.|+++.|... |+..+.. ..+...|...+..|.
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHH
Confidence 544443321 111 567799999999999999999832 2222222 345556666666666
Q ss_pred hcC---------------cHHHHHHHHH
Q 011463 454 DRR---------------KMRQAAELLL 466 (485)
Q Consensus 454 ~~g---------------~~~~A~~~~~ 466 (485)
..+ +++.+++++.
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 555 6666666665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=143.79 Aligned_cols=249 Identities=13% Similarity=0.081 Sum_probs=107.8
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
-....|+++.|+..++.+. ...|+ ......+.++|...|+++.|+..++.. ..|+..++..+...+...
T Consensus 8 ~~~~~g~y~~ai~~~~~~~-----~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVK-----PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSC-----CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence 3344555555555555444 11121 123344455555555555555444321 122344444455555555
Q ss_pred CChhhHHHHHHHHHhcCC-CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGC-EPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
|+.++|++.++++...+. |.+...+..+..++...|++++|.+.+++ +.+...+..+...+.+. |++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~-g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL-DRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 555555555555544332 22333444444555555555555555544 23334444444444444 55555555
Q ss_pred HHHhhhhCCCCCCHH-h--HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 178 IFREMPNRGCTPDSY-T--YGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
.++.+.+.. |+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544432 1111 0 011112222234444444444444443 222344444444444444444444444444444
Q ss_pred CCCCCCHhhHHHHHHHHHcCCChHH-HHHHHHHHHh
Q 011463 255 KGVEPNVFTYSSLMDGLCKGGCSSQ-AMELLQMMIS 289 (485)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 289 (485)
.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 229 ~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 229 KD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 32 2233444444444444444432 2344444443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.7e-17 Score=140.36 Aligned_cols=254 Identities=13% Similarity=0.107 Sum_probs=153.5
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
++.....|++..|+..++......+.........+.++|...|+++.|+..++.. -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 4555667777777777776655433222334455667777777777777655431 245566666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNV-LIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
++|.+.++++...+..|+...+.. +...+... |++++|++.+++ +.+...+..++.++.+.|++++|.+.|+
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777776554454433333 33444444 777777777766 2366677777777777777777777777
Q ss_pred HHHHCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCC
Q 011463 216 EMETKACSPTVVTY---TSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRH 292 (485)
Q Consensus 216 ~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 292 (485)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 776652 332211 112233334466666776666666652 44566666666666666666666666666666533
Q ss_pred CCChhhHHHHHHHHHhcCCHHH-HHHHHHHHhHC
Q 011463 293 RPNIVTYSTLLNGLCKEGKLQE-AVEILDRMKLQ 325 (485)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 325 (485)
. ++.++..++..+...|+.++ +..+++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2 55566666666666666644 45566666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=148.07 Aligned_cols=239 Identities=13% Similarity=0.124 Sum_probs=75.4
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFR 141 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 141 (485)
+.|++++|.+.++++ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 556677777777766 23346777777777777777777777542 455567777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
+++..++. .++..+...++.++.+. |+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 66655553 24455566666666666 77776665553 245556777777777777777777777655
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 222 CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYST 301 (485)
Q Consensus 222 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 301 (485)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 24666666666777777766666665 15666666666666666666664433321 123333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh
Q 011463 302 LLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 302 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 343 (485)
++..|.+.|.+++|..+++...... +.....|+.+..+|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5566666666666666666665443 3344555555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-14 Score=143.05 Aligned_cols=357 Identities=16% Similarity=0.242 Sum_probs=261.0
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC--DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
.++.-....+++|...|.+.+|+++++++...+. .-+....+.++....+. +..+..+...++... + ...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence 3555567788999999999999999999985422 12446666677766666 556666666665422 1 334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+...+...|.+++|..+|++.. -.....+.++. .. +++++|.++.++.. +..+|..+..++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i-~nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI-GNLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH-hhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 7788889999999999999863 12223344443 33 89999999998762 5788999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
++++|++.|.+. .|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999764 377889999999999999999999999888764 33333445888999999888644442
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011463 286 MMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPN 365 (485)
Q Consensus 286 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 365 (485)
. .++...+..+...|...|++++|...|... ..|..++.++.+.|++++|.+.+++.. +
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------S 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------C
Confidence 2 235667778999999999999999999884 479999999999999999999998872 3
Q ss_pred cccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011463 366 RLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGT 444 (485)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 444 (485)
..+|. .+..+|... ++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....
T Consensus 1250 ~~aWk-------ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1250 TRTWK-------EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred HHHHH-------HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 34554 555566555 66666665443 22256677788888999999999999998887543 223335
Q ss_pred HHHHHHHHH--hcCcHHHHHHHHHHHHH
Q 011463 445 WSAVMTALW--DRRKMRQAAELLLLELM 470 (485)
Q Consensus 445 ~~~l~~~~~--~~g~~~~A~~~~~~~~~ 470 (485)
|..+...+. +-++..++.++|..-++
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 544544444 44566666666654443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-15 Score=138.34 Aligned_cols=311 Identities=13% Similarity=0.030 Sum_probs=150.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc---chHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF---RPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
..+...+.+.|++++|++.|+++. ..+ ++.++..+...|...|+. ++|.++|++..+. ++..+..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa---~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg 76 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLA---ELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHT---CCTGGGTCC--------------------------------CHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---HCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 456777788888888888888877 233 344555666667777777 7888888877754 445566666
Q ss_pred HHHhccC-----ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 93 RGYGRVH-----RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL---KLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 93 ~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
..+...+ ++++|+..|++..+.| +...+..+...|...+.. .++.+.+......|. ......+...
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~ 150 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLL 150 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 6444444 6677888888777755 233666666666654432 234444444444442 2223333333
Q ss_pred HHhcCCChHH----HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 165 LCKNSGTMDA----AFKIFREMPNRGCTPDSYTYGTLINGLCRLG---KIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 165 ~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
+... +.++. +..+++..... ++..+..|...|...| +.++|++.|++..+.+. ++...+..+...|.
T Consensus 151 y~~~-~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 151 YRTQ-GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHH-TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHcC-CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 3333 43333 33333333222 2235566666666666 66666666666665542 23333344555554
Q ss_pred cc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011463 238 QS----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDG-L--CKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 238 ~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 310 (485)
.. +++++|...|+... .| ++..+..+... + ...+++++|.++|++..+.| ++..+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 43 46666666666655 22 33444444444 2 34556666666666665544 4444555555554 33
Q ss_pred -----CHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 011463 311 -----KLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLG 360 (485)
Q Consensus 311 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 360 (485)
++++|...|++.. . -+...+..+...|.. ..++++|..+|++..+.
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 5666666665554 2 244444445544443 22555555555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-16 Score=142.51 Aligned_cols=379 Identities=12% Similarity=0.068 Sum_probs=254.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh---hhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP---LDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+...+.+.|++++|.++|++..+.+ +...+..+...|...|+. ++|+.+|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35777889999999999999998875 445566677777778888 9999999999863 6667777777555
Q ss_pred HcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh---HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 132 EEN-----QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM---DAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 132 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+ ++++|...|++..+.|.. + .+..+...+... +.. ..+.+.+....+.| +......|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~-~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQY-PHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHC-GGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 555 788999999999997732 2 444444444443 332 44566666665554 45567778888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC----CC
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSK---SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG----GC 276 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 276 (485)
.+.++++......+.+.-...+...+..+...|...| +.++|+..|+...+.| +++...+..+...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 8866665555433333222234558888999999999 9999999999999987 45666556677777654 79
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcC-----CHH
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNG-L--CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIG-----KYQ 348 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 348 (485)
+++|..+|++.. . -++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 999999999987 3 366677777776 4 56899999999999999876 6778888888887 55 999
Q ss_pred HHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc----C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----
Q 011463 349 EAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK----T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK---- 419 (485)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 419 (485)
+|..+|++.. .|. ..... .+...|.. . ++++|..+|++..+.| +......|...|..
T Consensus 305 ~A~~~~~~Aa-~g~---~~A~~-------~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 305 AAEAHFEKAV-GRE---VAADY-------YLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp HHHHHHHTTT-TTC---HHHHH-------HHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTB
T ss_pred HHHHHHHHHh-CCC---HHHHH-------HHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCC
Confidence 9999999987 432 22222 34444443 3 9999999999999876 45567777877764
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 420 KGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
..+..+|...|+...+.|. ++.......+......++..+|.+..++..+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4589999999999998873 33333333333334556788888888877665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-16 Score=127.42 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=101.6
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|+++..+..+...+...|++++|...|+++++..|. +...+..+...+.+.|++++|+..|++..+.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456667777777777777777777777777777655 67777777777777777777777777777654 3456666777
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhH
Q 011463 127 LAILVEE-----------NQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTY 194 (485)
Q Consensus 127 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 194 (485)
..++... |++++|...+++..+.. |+ ...+..+...+... |++++|...|++..+.. .+...+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALL-GERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcc--cchHHH
Confidence 7666665 44444444444444432 22 22333333333333 44444444444444443 244444
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...++
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444444331 1133334444444444444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-16 Score=127.61 Aligned_cols=196 Identities=11% Similarity=0.032 Sum_probs=161.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+.+.|++++|+..|++++ ...|.++..+..+..++.+.|++++|...++++.+..|. +...+..+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERAL----KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 45667888999999999999999999 455778999999999999999999999999999999876 7889999999
Q ss_pred HHhcc-----------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 94 GYGRV-----------HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 94 ~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
++... |++++|+..|++..+.. |.+...+..+..++...|++++|...|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 99999 99999999999999875 4568889999999999999999999999999987 6778888888
Q ss_pred HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
..+... |++++|...+++..+..+. +...+..+..++...|++++|...|++...
T Consensus 159 ~~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSM-GRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 888888 9999999999999987533 788899999999999999999999988654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-15 Score=128.66 Aligned_cols=226 Identities=15% Similarity=0.044 Sum_probs=143.5
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCC--CC----HhhH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE--PT----PKSY 123 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 123 (485)
...+..++..+...|++++|.+.|+++.... .+...+..+...+...|++++|+..+++..+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776665 46666777777777777777777777776654210 11 4566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
..+..++...|++++|...++++.+.. |+.. .+... |++++|...++.+..... .+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------ILTKL-RNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------HHHHH-HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------HHHHH-hHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 677777777777777777777776643 4422 23333 666777777777666521 245566666677777
Q ss_pred cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHH
Q 011463 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMEL 283 (485)
Q Consensus 204 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 283 (485)
.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777777777777766543 2245566666666667777777777776666553 33455566666666666666666666
Q ss_pred HHHHHhC
Q 011463 284 LQMMISK 290 (485)
Q Consensus 284 ~~~~~~~ 290 (485)
++.+.+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-13 Score=128.05 Aligned_cols=441 Identities=8% Similarity=0.016 Sum_probs=301.9
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---hhh
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR---PLD 103 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~ 103 (485)
...+.+..|+..+ ...|.|...|..++..+.+.+.++.+..+|+++...-|. ....|...+..-.+.|+ ++.
T Consensus 47 ~~~d~i~~lE~~l----~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E~~~~~~~~~~~ 121 (679)
T 4e6h_A 47 DESDVIGKLNDMI----EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLEFDKMEELDAAV 121 (679)
T ss_dssp CCSCHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC--CCCHHH
T ss_pred CCHHHHHHHHHHH----HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhhCCcchHHH
Confidence 3455666777777 234779999999999999999999999999999998665 78899999999888898 999
Q ss_pred HHHHHHHHHhcC-CCCCHhhHHHHHHHHHHcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHhc---
Q 011463 104 AMRVFDKMKEFG-CEPTPKSYITVLAILVEENQL--------KLAFRFYRHMRE-IGI-QPC-VASLNVLIKALCKN--- 168 (485)
Q Consensus 104 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~~--- 168 (485)
+..+|++..... .+|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+......
T Consensus 122 v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 122 IEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 999999998863 138889999888877665543 344577877664 355 454 45677776654321
Q ss_pred -----CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH-------------cCCHhHHHHHHHHHHHC--CC----C-
Q 011463 169 -----SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR-------------LGKIYEAKELFKEMETK--AC----S- 223 (485)
Q Consensus 169 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~- 223 (485)
.++++.+.++|++++......-..+|......-.. ..++..|...+.++... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 14567888999998864222122334322211111 11234444555543221 11 1
Q ss_pred ----------C--C------hhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChH
Q 011463 224 ----------P--T------VVTYTSLINGLCQSK-------SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSS 278 (485)
Q Consensus 224 ----------~--~------~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (485)
| + ...|...+.---..+ ..+.+..+|++.... .+-....|-..+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 122333333222221 134456778888765 3457788888888888889999
Q ss_pred HHH-HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCC---------CCC------------HHhHHH
Q 011463 279 QAM-ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL---------KPD------------AGLYGK 336 (485)
Q Consensus 279 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~ 336 (485)
+|. .+|++.... .+.+...+-..+....+.|+++.|..+|+++..... .|+ ..+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999875 344666677788888899999999999999876310 131 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITC 416 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 416 (485)
.+....+.|+.+.|..+|.++.+.. |. .++.. -+..+.+......+++.|.++|+...+.-+. +...|...+..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~--~~-~~~~l--yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-~~~~w~~y~~f 513 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLK--KL-VTPDI--YLENAYIEYHISKDTKTACKVLELGLKYFAT-DGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTG--GG-SCTHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc--CC-CChHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 8888888999999999999998751 11 11210 0111222222222689999999999886333 66778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccchhc
Q 011463 417 FCKKGDIHKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEVDI 480 (485)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (485)
....|+.+.|..+|++.+.....+ ....|..++..-.+.|+.+.+.++.+++.+..+.++.+.+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 888999999999999999863211 3456777887778899999999999999998877766654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=135.53 Aligned_cols=253 Identities=11% Similarity=-0.040 Sum_probs=174.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+...|++++|+..|+.+........+.+..++..++..+...|++++|.+.|+++....+. +...+..+...+...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccC
Confidence 45667999999999999993100011234678889999999999999999999999998765 78899999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFR 180 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 180 (485)
+++|+..|++..+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+... |++++|...++
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~ 168 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK-LDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 999999999998864 4467888899999999999999999999998854 5555444455555555 88888888887
Q ss_pred hhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011463 181 EMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS---PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 257 (485)
....... ++...+ .++..+...++.++|...+.+....... .+...+..+..++...|++++|...|++..+..
T Consensus 169 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 169 QHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 7766532 233333 3566666777777777777776543211 013455566666666666666666666666542
Q ss_pred CCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 258 EPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
|+. +.....++...|++++|++.+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 211 112233444455555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-15 Score=131.54 Aligned_cols=216 Identities=7% Similarity=-0.015 Sum_probs=94.1
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR-PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+|..+..++...|++++|++.+++++..++. +..+|..+..++...|+ +++|+..|+++.+.+ +.+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 34444444444444455555555444444433 44444444444444443 445555444444432 2234444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH-cCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR-LGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 208 (485)
+...|++++|+..|+++++.. +-+...|..+...+... |++++|+..++++++.... +...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 444444555555544444432 11233333333333333 4445555555444444322 44444444444444 33324
Q ss_pred HH-----HHHHHHHHHCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 209 EA-----KELFKEMETKACSPTVVTYTSLINGLCQSK--SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 209 ~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
+| +..|++..... +-+...|..+..++...| ++++|+..+..+ +. .+.+...+..+..+|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 44 24444444331 113344444444444444 344444444444 22 122334444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-15 Score=126.60 Aligned_cols=232 Identities=8% Similarity=-0.020 Sum_probs=149.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--CHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--TEDIFLSICR 93 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 93 (485)
...+..+...|++++|+..|+.++. ..|.+...+..++..+...|++++|.+.++++......+ ....+..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEA----KKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH----TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3456677778888888888887772 234455677777777888888888888888777732111 2234677777
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
.+...|++++|+..|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+... ++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHHH
Confidence 7777788888888887777654 3456677777777777777777777777776643 22333343333144444 6777
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC---HhHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHccCCHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK---IYEAKELFKEMETKA-CSPT------VVTYTSLINGLCQSKSVE 243 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~~~~~ 243 (485)
+|.+.++++.+.... +...+..+..++...|+ +++|...|++..+.. ..|+ ...+..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 777777777765322 45666666777776676 666777776665431 1122 134555666666666666
Q ss_pred HHHHHHHHHHhC
Q 011463 244 EAMRLFEEMRSK 255 (485)
Q Consensus 244 ~a~~~~~~~~~~ 255 (485)
+|...+++..+.
T Consensus 239 ~A~~~~~~al~~ 250 (272)
T 3u4t_A 239 KADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 666666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=124.37 Aligned_cols=223 Identities=16% Similarity=0.137 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC--CC----HHhHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT--PD----SYTYG 195 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 195 (485)
.+..+...+...|++++|...|+++.+.. .+...+..+...+... |++++|...++++.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 34444444444455555555554444443 3344444444444444 5555555555444433111 01 35556
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCC
Q 011463 196 TLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGG 275 (485)
Q Consensus 196 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (485)
.+..++...|++++|...|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6666666666666666666666553 2221 33445566677777777766652 234555666777777777
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (485)
++++|...++.+.+.... +..++..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777765332 56677777777777777777777777777653 4456677777777888888888888777
Q ss_pred HHHH
Q 011463 356 EMVL 359 (485)
Q Consensus 356 ~~~~ 359 (485)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=152.82 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHH---hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMK---EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
.+|+.+|.+|++.|++++|.++|++|. ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999998875 45789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC-hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC------hhhHHHHHHH
Q 011463 163 KALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT------VVTYTSLING 235 (485)
Q Consensus 163 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~~ 235 (485)
..+++. |+ .+.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..+..|+ ..+...|.+.
T Consensus 208 ~glcK~-G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 208 QCMGRQ-DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHH-TCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999998 77 478999999999999999999999988765543 334444444 2233333 4455566677
Q ss_pred HHccC---------CHHHHHHHHHH
Q 011463 236 LCQSK---------SVEEAMRLFEE 251 (485)
Q Consensus 236 ~~~~~---------~~~~a~~~~~~ 251 (485)
|.+.+ ..++-...|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 77655 24555555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=125.64 Aligned_cols=234 Identities=10% Similarity=0.037 Sum_probs=142.5
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCH----hhHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP----KSYIT 125 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 125 (485)
+..+...+..+...|++++|...++++.+..+. +...+..+...+...|++++|+..+++..+.. ++. .+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 344566677777888888888888887777654 55577777777778888888888888777632 222 23677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 126 VLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 126 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+..++...|++++|.+.|++..+.. +.+...+..+...+... |++++|...+++..+.. +.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 7777777777777777777777654 22345555666666665 77777777777776653 225556666663333445
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHcCC
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS---VEEAMRLFEEMRSKG-VEPN------VFTYSSLMDGLCKGG 275 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~ 275 (485)
++++|.+.|++..+.. +.+...+..+..++...++ +++|...+++..+.. ..|+ ..++..+...|...|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7777777777766542 2234455555555555555 555555555554321 0112 134444555555555
Q ss_pred ChHHHHHHHHHHHhC
Q 011463 276 CSSQAMELLQMMISK 290 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~ 290 (485)
++++|.+.++++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 555555555555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-17 Score=155.82 Aligned_cols=113 Identities=13% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHhhhh---CCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH
Q 011463 156 ASLNVLIKALCKNSGTMDAAFKIFREMPN---RGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232 (485)
Q Consensus 156 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (485)
.+|+++|..|++. |++++|.++|++|.+ .|..||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 128 ~TynaLIdglcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3455555555555 555555555544332 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHccCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 233 INGLCQSKS-VEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 233 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 555555554 2445555555555555555555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=129.35 Aligned_cols=251 Identities=9% Similarity=0.004 Sum_probs=175.7
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ-LKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
+..+|..+..++.+.|++++|+..|+++++.+ +.+..+|..+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567777777788888888888888887764 4457778888888888886 888888888888755 22455666666
Q ss_pred HHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-cCC
Q 011463 163 KALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ-SKS 241 (485)
Q Consensus 163 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~ 241 (485)
..+... |++++|+..|+++++.... +...|..+..++...|++++|+..|+++++... .+...|+.+..++.. .|.
T Consensus 174 ~~~~~~-g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWL-RDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHH-TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHc-cCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 666666 8888888888888876543 677888888888888888888888888877643 266777777777777 555
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHcCC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----
Q 011463 242 VEEA-----MRLFEEMRSKGVEPNVFTYSSLMDGLCKGG--CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEG---- 310 (485)
Q Consensus 242 ~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 310 (485)
.++| +..+++..+.. +-+...|..+..++...| ++++|.+.+..+ +. .+.+...+..+..+|...|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 4666 47777777653 335667777777777777 577888877776 33 2335667777777777653
Q ss_pred -----CHHHHHHHHHHH-hHCCCCCCHHhHHHHHHHHHh
Q 011463 311 -----KLQEAVEILDRM-KLQGLKPDAGLYGKIISCFCD 343 (485)
Q Consensus 311 -----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 343 (485)
..++|..+++++ .+.. +.....|..+...+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 247788888887 5542 3344556666555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-13 Score=117.22 Aligned_cols=224 Identities=11% Similarity=0.026 Sum_probs=140.3
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
.++.++..+...+...|++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35566666667777777777777777776662 245566666666666 777777777777776653 56666
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHH
Q 011463 124 ITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYG 195 (485)
Q Consensus 124 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 195 (485)
..+...+.. .+++++|.+.|++..+.+ +...+..+...+.. . +++++|...+++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhcC---cHHHHH
Confidence 666666666 677777777777666654 44455555555555 4 66677777776666654 445555
Q ss_pred HHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 011463 196 TLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSL 267 (485)
Q Consensus 196 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 267 (485)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 66666666 666666666666666542 34555556666666 666666666666666553 24445555
Q ss_pred HHHHHc----CCChHHHHHHHHHHHhC
Q 011463 268 MDGLCK----GGCSSQAMELLQMMISK 290 (485)
Q Consensus 268 ~~~~~~----~~~~~~a~~~~~~~~~~ 290 (485)
...|.. .+++++|.+.+++..+.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 556665 66666666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-15 Score=126.93 Aligned_cols=244 Identities=11% Similarity=-0.062 Sum_probs=127.4
Q ss_pred CCHhHHHHHHHHHHHCCC---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHH
Q 011463 205 GKIYEAKELFKEMETKAC---SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 281 (485)
|++++|+..|+++.+... +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344444444444443311 1123334444444445555555555555544432 223444555555555555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..++++.+..+. +..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555544221 34455555555555555555555555555432 222222223333344566666666665555432
Q ss_pred CCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011463 362 ITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV---DSLTYSSLITCFCKKGDIHKSARIVDELVLDG 437 (485)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 437 (485)
|+..... .+...+... +.++|...+++.....+.. +...+..+..+|...|++++|...|+++.+.
T Consensus 175 --~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 244 (275)
T 1xnf_A 175 --DKEQWGW-------NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN- 244 (275)
T ss_dssp --CCCSTHH-------HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred --CcchHHH-------HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Confidence 2211111 233333333 5566666666655442211 2577888999999999999999999999976
Q ss_pred CCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 438 CLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 438 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
.|+. +.....++...|++++|++.+
T Consensus 245 -~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 -NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred -Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 4533 333455778889999998876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=123.38 Aligned_cols=194 Identities=16% Similarity=0.135 Sum_probs=90.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+++. ...+.+...+..++..+...|++++|.+.++++....+. +...+..+...+.
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAI----EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp --------------CCTTHHHHH----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 34444555555555555555555 222334555555555555555555555555555554433 4455555555555
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+... |++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE-GMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-CCHHHHH
Confidence 5555555555555555442 2344455555555555555555555555555432 12333444444444444 5555555
Q ss_pred HHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 177 KIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
..++.+.+... .+..++..+..++...|++++|.+.++++.+
T Consensus 180 ~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 180 SQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555544321 1344455555555555555555555555544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-13 Score=117.37 Aligned_cols=201 Identities=8% Similarity=-0.012 Sum_probs=102.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
+..+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 344555556666666666666666666555433 45555556666666666666666666655543 2344555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
+...|++++|.+.++++.+.+..|+ ...+..+...+... |++++|...++++.+.... +...+..+..++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555554212232 22333333344443 5555555555555444211 3444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555544431 123334444444455555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-13 Score=114.77 Aligned_cols=224 Identities=10% Similarity=0.017 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
+..++..+...+...|++++|+..|++..+. .+..++..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555542 234445555555555 555555555555555443 333344
Q ss_pred HHHHHHHh----cCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHH
Q 011463 160 VLIKALCK----NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTS 231 (485)
Q Consensus 160 ~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 231 (485)
.+...+.. . +++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++
T Consensus 79 ~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~--------------- 139 (273)
T 1ouv_A 79 LLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK--------------- 139 (273)
T ss_dssp HHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH---------------
T ss_pred HHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH---------------
Confidence 44444433 3 55555555555544432 34444444444444 4445555544444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011463 232 LINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307 (485)
Q Consensus 232 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (485)
..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 140 --------------------a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 140 --------------------ACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp --------------------HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred --------------------HHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 44432 23334444444444 455555555555554442 3344444555555
Q ss_pred h----cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011463 308 K----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 308 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 361 (485)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5 555555555555555543 24444455555555 555555555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-14 Score=115.96 Aligned_cols=205 Identities=10% Similarity=0.016 Sum_probs=135.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.++..+..++..+...|++++|.+.++.+....+. +...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 345666777777777777777887777777776544 56677777777777777777777777777653 3456677777
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 127 LAILVEE-NQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 127 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
...+... |++++|...++++.+.+..|+ ...+..+...+... |++++|...++++.+.... +...+..+..++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHc
Confidence 7777777 777777777777776222233 34445555555555 7777777777776665322 466666677777777
Q ss_pred CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 205 GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
|++++|...++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665422134555555666666667777777776666543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=118.19 Aligned_cols=200 Identities=8% Similarity=-0.040 Sum_probs=172.1
Q ss_pred CChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHH
Q 011463 13 ITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSIC 92 (485)
Q Consensus 13 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 92 (485)
..+..++..+...|++++|++.|+++.. ..+.+..++..++..+...|++++|.+.++++....+. +...+..+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 112 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHH
Confidence 3455677888999999999999999983 23567889999999999999999999999999988765 788999999
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
..+...|++++|.+.++++.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+... |+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE-RE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-CC
Confidence 99999999999999999998732234 56788889999999999999999999998865 23466777777888887 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
+++|...++.+.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 191 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988643 47788889999999999999999999999876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-14 Score=120.44 Aligned_cols=201 Identities=12% Similarity=0.097 Sum_probs=125.6
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
.+..|..++..+...|++++|...|+++....+. +...+..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4456777777888888888888888888876554 67777778888888888888888888877764 446677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
.+...|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.+... .+...+..+..++...|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL-EQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 7888888888888888777654 23455555566666665 777777777777766532 25666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 209 EAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 209 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+|...|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777766542 224555666666666666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-13 Score=113.24 Aligned_cols=200 Identities=14% Similarity=0.045 Sum_probs=170.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..++..+...|++++|++.|+.+.. ..+.+...+..++..+...|++++|.+.++++....+. +...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALK----SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 345678889999999999999999983 33567889999999999999999999999999988765 7888999999
Q ss_pred HHhcc-CChhhHHHHHHHHHhcCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRV-HRPLDAMRVFDKMKEFGCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+... |+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA-GQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc-CC
Confidence 99999 99999999999998832223 36788899999999999999999999998865 23467777777788887 99
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
+++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999988754247778888888899999999999999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=129.44 Aligned_cols=297 Identities=14% Similarity=0.076 Sum_probs=177.7
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHhc----CCC-CC
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT----EDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCE-PT 119 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 119 (485)
....+......+...|++++|...|+++....+. + ..++..+...+...|++++|...+++.... +-+ ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555566666666666666666666665433 2 234555666666666666666666655332 101 12
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCC--------------------hHH
Q 011463 120 PKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PC----VASLNVLIKALCKNSGT--------------------MDA 174 (485)
Q Consensus 120 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~--------------------~~~ 174 (485)
..++..+...+...|++++|...+++..+.... ++ ...+..+...+... |+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHH
Confidence 344555666666666666666666665542100 01 22444444455554 66 667
Q ss_pred HHHHHHhhhhC----CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHccCCHHH
Q 011463 175 AFKIFREMPNR----GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-PT----VVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 175 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~ 244 (485)
|...+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 76666665432 11 112346777788888888888888888877643111 11 2367777888888888888
Q ss_pred HHHHHHHHHhC----CCCC-CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHH
Q 011463 245 AMRLFEEMRSK----GVEP-NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-PN----IVTYSTLLNGLCKEGKLQE 314 (485)
Q Consensus 245 a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~ 314 (485)
|...+++..+. +..+ ...++..+...|...|++++|...++........ .+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888877643 1111 1456677788888889999998888887653111 11 4567777888888899999
Q ss_pred HHHHHHHHhHC----CCC-CCHHhHHHHHHHHHhcCCH
Q 011463 315 AVEILDRMKLQ----GLK-PDAGLYGKIISCFCDIGKY 347 (485)
Q Consensus 315 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 347 (485)
|...+++..+. +.. ....++..+...+...|+.
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 98888876543 111 1133455556666655544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-14 Score=129.59 Aligned_cols=138 Identities=11% Similarity=0.010 Sum_probs=87.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCC-----ccc
Q 011463 333 LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSI-----SVD 406 (485)
Q Consensus 333 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~-----~~~ 406 (485)
++..+...+...|++++|...+++..+.. ++.........++..+...+... ++++|...+++...... ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55556666666666666666666665421 11111011112333455555555 66666666666554211 112
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
..++..+...|...|++++|...+++..+. +..+ ...++..+..+|.+.|++++|.++++++++..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788899999999999999999998764 1111 13466778888999999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-13 Score=116.13 Aligned_cols=218 Identities=11% Similarity=0.104 Sum_probs=155.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHh-------cCCc-------chHHHHHHHHhh-cCCCCCHHHHHHHHH
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVS-------ANQF-------RPAEDLLDRVNK-EKCDITEDIFLSICR 93 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 93 (485)
++|+.+|++++. ..|.++..|..++..+.. .|++ ++|..+|++++. ..+. +...|..++.
T Consensus 33 ~~a~~~~~~al~----~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLL----VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 788899999983 346778888888887763 5776 889999999888 4544 6778888888
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCC-Hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPT-PK-SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT 171 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 171 (485)
.+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...+...........|+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC
Confidence 888889999999999998875 343 33 78888888888888888888888888754 22333333222221121278
Q ss_pred hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHccCCHHHHHHH
Q 011463 172 MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSP--TVVTYTSLINGLCQSKSVEEAMRL 248 (485)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~ 248 (485)
+++|..+|+...+... .+...|..++..+.+.|++++|..+|++..... .+| ....|..++....+.|+.+.|..+
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 185 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887776532 256777777777777788888888888777652 233 345666667777777777777777
Q ss_pred HHHHHhC
Q 011463 249 FEEMRSK 255 (485)
Q Consensus 249 ~~~~~~~ 255 (485)
++++.+.
T Consensus 264 ~~~a~~~ 270 (308)
T 2ond_A 264 EKRRFTA 270 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-11 Score=116.81 Aligned_cols=420 Identities=11% Similarity=0.084 Sum_probs=279.6
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC---cchHHHHHHHHhhcCC-CCCHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ---FRPAEDLLDRVNKEKC-DITEDIFLS 90 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~~~ 90 (485)
...+++.+.+.++++.+..+|+.++ ..+|.....|...+..-.+.|+ ++.+.++|++.+...+ .|++..|..
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEraL----~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~ 144 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDKLH----DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS 144 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 3455666788899999999999999 4567788899999999899999 9999999999998752 368889988
Q ss_pred HHHHHhccCCh--------hhHHHHHHHHHhc-CC-CC-CHhhHHHHHHHHH---------HcCCHHHHHHHHHHHHHcC
Q 011463 91 ICRGYGRVHRP--------LDAMRVFDKMKEF-GC-EP-TPKSYITVLAILV---------EENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 91 l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~ 150 (485)
.+....+.++. +...++|+..... |. .+ +...|...+.... ..++++.+..+|++++...
T Consensus 145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP 224 (679)
T 4e6h_A 145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224 (679)
T ss_dssp HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence 88766555543 3345788876643 55 34 4567888876543 3445788899999988531
Q ss_pred CCCCHHHHHHHHHHHHh-c-----------CCChHHHHHHHHhhhhC--CC----C-----------C-----C---HHh
Q 011463 151 IQPCVASLNVLIKALCK-N-----------SGTMDAAFKIFREMPNR--GC----T-----------P-----D---SYT 193 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~-~-----------~~~~~~a~~~~~~~~~~--~~----~-----------~-----~---~~~ 193 (485)
...-..+|......--. . ..+++.|...+.++... ++ + | + ...
T Consensus 225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence 11112222211111000 0 02234444455442211 11 1 1 0 134
Q ss_pred HHHHHHHHHHcC-------CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHhhHH
Q 011463 194 YGTLINGLCRLG-------KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM-RLFEEMRSKGVEPNVFTYS 265 (485)
Q Consensus 194 ~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~ 265 (485)
|...+..--..+ ..+.+..+|++.... .+.....|...+..+...|+.++|. .+++..... ++.+...+-
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl 382 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAF 382 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 444444322222 123456678888765 4457778888888888889988996 999999875 345666677
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhCC---------CCC------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 266 SLMDGLCKGGCSSQAMELLQMMISKR---------HRP------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+....+.|+++.|.++|+.++... ..| ...+|...+....+.|+.+.|..+|.+..+
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888889999999999999988641 012 123577777777888999999999999987
Q ss_pred CCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCC
Q 011463 325 QGLKPDAGLYGKIISCFCDI-GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRS 402 (485)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~ 402 (485)
.........|...+..-.+. ++.+.|.++|+..++. .|+...+ +...+...... +.+.|..+|++.....
T Consensus 463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~------w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEY------INKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHH------HHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHH------HHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 61122334444433333344 4589999999999885 3443332 12444444444 8999999999999875
Q ss_pred Cc--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 403 IS--VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 403 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+. -....|...+..-.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 52 24567888888888999999999999999987 455444444444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.7e-14 Score=128.39 Aligned_cols=276 Identities=15% Similarity=0.062 Sum_probs=148.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHhc----C-CCCCHh
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----G-CEPTPK 121 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 121 (485)
..+..+...+...|++++|...|+++....+. +. .++..+...|...|++++|+..+++..+. + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556677788888888888888888887544 33 46777778888888888888888877553 1 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCC-----------------hHHHHHHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIG----IQP-CVASLNVLIKALCKNSGT-----------------MDAAFKIF 179 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~-----------------~~~a~~~~ 179 (485)
++..+...+...|++++|...+++..+.. -.+ ....+..+...+... |+ +++|...+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHH
Confidence 66777777788888888888887766531 011 122344444444444 66 55565555
Q ss_pred HhhhhC----CC-CCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 180 REMPNR----GC-TPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-PTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 180 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
++..+. +. .....++..+...+...|++++|...+++..+.... .+..
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------- 260 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA-------------------------- 260 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH--------------------------
Confidence 554332 10 011234445555555555555555555554332100 0000
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHR-----PNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ--- 325 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 325 (485)
.....+..+...|...|++++|...++++...... ....++..+...+...|++++|...+++....
T Consensus 261 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 261 -----AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp -----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 00113344444444455555555544444332100 01234444555555555555555555554332
Q ss_pred -C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 326 -G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 326 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+ ......++..+..+|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 001133555566666666666666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-13 Score=125.27 Aligned_cols=276 Identities=14% Similarity=0.055 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHhh
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKACSPT----VVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEP-NVFT 263 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 263 (485)
.+......+...|++++|...|++..+.... + ...+..+...+...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344444455555555555555554443111 1 123444445555555555555555443321 1011 1233
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHR-PN----IVTYSTLLNGLCKEGK--------------------LQEAVEI 318 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 318 (485)
+..+...+...|++++|...++++.+.... ++ ..++..+...+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 444555555556666655555554432100 01 2345555555666666 6666666
Q ss_pred HHHHhHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHH
Q 011463 319 LDRMKLQ----GL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAF 392 (485)
Q Consensus 319 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~ 392 (485)
+.+.... +. +....++..+...+...|++++|...+++..+.. ++...-.....++..+...+... ++++|.
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 6554321 10 1112355666666777777777777777665421 11110011122333555555555 777777
Q ss_pred HHHHHHHhCCCc-----cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHH
Q 011463 393 QVYLSMRNRSIS-----VDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 393 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
..+++....... ....++..+...|...|++++|...++++.+. +-.+ ...++..+..++...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766532111 11456777888888888888888888887653 1111 1345667777888888888888
Q ss_pred HHHHHHHHc
Q 011463 463 ELLLLELMN 471 (485)
Q Consensus 463 ~~~~~~~~~ 471 (485)
++++++++.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=122.49 Aligned_cols=208 Identities=14% Similarity=0.027 Sum_probs=119.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC--------------------HHHHHH
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISKRH-RPN----IVTYSTLLNGLCKEGK--------------------LQEAVE 317 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 317 (485)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 344444455555555555555555433210 001 2244445555555555 555555
Q ss_pred HHHHHhHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHH
Q 011463 318 ILDRMKLQ----GL-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRA 391 (485)
Q Consensus 318 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a 391 (485)
.+++.... +. +....++..+...+...|++++|...+++..+.. +..........++..+...+... ++++|
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55554321 10 1112355666666777777777777777665421 11100001112233445555555 77777
Q ss_pred HHHHHHHHhCCC-----ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHH
Q 011463 392 FQVYLSMRNRSI-----SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 392 ~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A 461 (485)
...+++...... .....++..+...|...|++++|...++++.+. +-.+ ...++..+..++.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 777776654211 112557788889999999999999999998764 1111 134667788899999999999
Q ss_pred HHHHHHHHHcC
Q 011463 462 AELLLLELMNK 472 (485)
Q Consensus 462 ~~~~~~~~~~~ 472 (485)
.++++++++..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=104.34 Aligned_cols=166 Identities=14% Similarity=0.102 Sum_probs=95.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
++.+|..++..+...|++++|++.|+++++.+|. +..++..+..+|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666666554 55666666666666666666666666665543 334455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHh
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIY 208 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (485)
.+...++++.+.+.+.+..... +.+...+..+...+... |++++|++.|++..+..+. +..++..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSM-GEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHh-CCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 5666666666666666655543 12333444444444444 6666666666655554322 4555555566666666666
Q ss_pred HHHHHHHHHHH
Q 011463 209 EAKELFKEMET 219 (485)
Q Consensus 209 ~a~~~~~~~~~ 219 (485)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666655554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=121.15 Aligned_cols=247 Identities=13% Similarity=0.036 Sum_probs=151.4
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETK-------ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------G 256 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 256 (485)
...++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777888888888888888877652 22334556777777888888888888888777653 1
Q ss_pred -CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC---
Q 011463 257 -VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK------RH-RPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ--- 325 (485)
Q Consensus 257 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 325 (485)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223556777888888888888888888887764 11 223456777888888999999999998887664
Q ss_pred ---C-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCcccccchhhhHHHHHHHHhcCChhHHHHH
Q 011463 326 ---G-LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG-------ITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQV 394 (485)
Q Consensus 326 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 394 (485)
+ .+....++..+..+|...|++++|...++++.+.. ..+...... .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~---------------- 242 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW-------M---------------- 242 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH-------H----------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH-------H----------------
Confidence 1 12234577888889999999999999999887531 111111110 0
Q ss_pred HHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 395 YLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
....+..+...+...+.+.++...++...... +....++..+..+|.+.|++++|.++++++++.
T Consensus 243 -----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 -----------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----------HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11122223333444555555666665555431 223345556666666777777777777766653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-12 Score=109.67 Aligned_cols=220 Identities=10% Similarity=0.062 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-------cCCCh-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011463 243 EEAMRLFEEMRSKGVEPNVFTYSSLMDGLC-------KGGCS-------SQAMELLQMMISKRHRPNIVTYSTLLNGLCK 308 (485)
Q Consensus 243 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 308 (485)
++|..+|+++.+.. +.+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666666542 335555655555544 34665 7777777777763122255567777777777
Q ss_pred cCCHHHHHHHHHHHhHCCCCC-CHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHh--
Q 011463 309 EGKLQEAVEILDRMKLQGLKP-DAG-LYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLC-- 384 (485)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 384 (485)
.|++++|..+|+++.+. .| +.. +|..++..+.+.|++++|..+|++..+.. |+... ++........
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~------~~~~~a~~~~~~ 181 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHH------VYVTAALMEYYC 181 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTH------HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHH------HHHHHHHHHHHH
Confidence 77788888887777764 33 233 67777777777788888888888777643 32211 1112211111
Q ss_pred cCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHhcCcHHHH
Q 011463 385 KTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDG-CLPD--EGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 385 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A 461 (485)
..++++|..+|+++.+..+. +...|..++..+.+.|++++|..+|+++++.. ++|+ ...|..++..+.+.|+.++|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 23777888888877765444 66778888888888888888888888888752 3443 45677777777888888888
Q ss_pred HHHHHHHHHcCCC
Q 011463 462 AELLLLELMNKCV 474 (485)
Q Consensus 462 ~~~~~~~~~~~~~ 474 (485)
..+++++++..+.
T Consensus 261 ~~~~~~a~~~~p~ 273 (308)
T 2ond_A 261 LKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHccc
Confidence 8888888886654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=118.75 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=120.5
Q ss_pred HHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIGIQ-PCVASLNVLIKA 164 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~ 164 (485)
....+...|++++|+..|++..+. +-++ ...++..+..++...|++++|...+.+..+.... ++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----------
Confidence 344455566666666666665442 1001 1234555555555566666665555554432100 00
Q ss_pred HHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-----CChhhHHHHHHHHHcc
Q 011463 165 LCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACS-----PTVVTYTSLINGLCQS 239 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ll~~~~~~ 239 (485)
. ......+++.+..+|...|++++|...|++..+.... ....++..+..+|...
T Consensus 179 -------~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 179 -------Y--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp -------T--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -------c--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 0 0001234455555555555555555555554432100 0112455555666666
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHhcC
Q 011463 240 KSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR----HRPNIVTYSTLLNGLCKEG 310 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~ 310 (485)
|++++|...+++..+. +. +....++..+..++.+.|++++|...+++..+.. .+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 6666666666655541 11 2234455566666666666666666666654421 1111222455666666666
Q ss_pred C---HHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 311 K---LQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 311 ~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+ +++|..++++... .+.....+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 5566666555421 112234566677777778888888877777764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=121.54 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCC----C-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQG----L-KPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
++..+...+...|++++|...+++..... . .....++..+...|...|++++|...+++..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444445555555555555554443220 0 00123455555566666666666666666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=118.81 Aligned_cols=192 Identities=12% Similarity=0.016 Sum_probs=139.9
Q ss_pred HHhcCCChHHHHHHHHhhhhC----CCCC-CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC------CCChhhHHHHH
Q 011463 165 LCKNSGTMDAAFKIFREMPNR----GCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMETKAC------SPTVVTYTSLI 233 (485)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~ll 233 (485)
+... |++++|...+++..+. +..+ ...++..+..+|...|++++|...+.+..+... +....+++.+.
T Consensus 113 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 113 ELDQ-REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3344 7777777777776553 1111 345777888888888888888888887765311 11235788899
Q ss_pred HHHHccCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHh-----CCCCCChhhHHHHH
Q 011463 234 NGLCQSKSVEEAMRLFEEMRSK----GV-EPNVFTYSSLMDGLCKGGCSSQAMELLQMMIS-----KRHRPNIVTYSTLL 303 (485)
Q Consensus 234 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 303 (485)
.+|...|++++|...+++..+. +. .....++..+..+|...|++++|...+++..+ ...+....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999999999988753 11 11124788899999999999999999999887 32133467788899
Q ss_pred HHHHhcCCHHHHHHHHHHHhHC----CCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQ----GLKPDAGLYGKIISCFCDIGK---YQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~ 357 (485)
..+...|++++|...+++..+. +.+.....+..+...+...|+ +++|+.++++.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999987653 112223346678888889999 77777777765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-12 Score=104.42 Aligned_cols=172 Identities=14% Similarity=0.061 Sum_probs=136.7
Q ss_pred CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 190 DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
+...|..+..+|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56778888888888888888888888887763 2366778888888888888888888888887764 335666777777
Q ss_pred HHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 011463 270 GLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQE 349 (485)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (485)
.+...++++.+...+.......+. +...+..+..++...|++++|+..|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 888888888888888888776433 67778888888888999999999998888764 4567788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCcc
Q 011463 350 AANFLDEMVLGGITPNRL 367 (485)
Q Consensus 350 a~~~~~~~~~~~~~~~~~ 367 (485)
|...|++..+. .|+..
T Consensus 160 A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHHHHT--THHHH
T ss_pred HHHHHHHHHhC--CccCH
Confidence 99999988874 35443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.2e-13 Score=123.54 Aligned_cols=216 Identities=9% Similarity=-0.049 Sum_probs=154.9
Q ss_pred CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh-hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 011463 65 QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP-LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFY 143 (485)
Q Consensus 65 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 143 (485)
+++++...++......+. +...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356667777766655443 677777777788888888 88888888877764 345777777888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC---------CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc--------CC
Q 011463 144 RHMREIGIQPCVASLNVLIKALCKNS---------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL--------GK 206 (485)
Q Consensus 144 ~~~~~~~~~~~~~~~~~ll~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 206 (485)
++..+.. |+...+..+... .... |++++|...+++..+.... +...|..+..+|... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMV-LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHH-HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHH-HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 8877754 665444444433 3445 7788888888888776433 677788888888877 88
Q ss_pred HhHHHHHHHHHHHCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHH
Q 011463 207 IYEAKELFKEMETKACS--PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELL 284 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 284 (485)
+++|+..|++..+.... .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888775321 367778888888888888888888888887764 335666777777888888888887766
Q ss_pred HHH
Q 011463 285 QMM 287 (485)
Q Consensus 285 ~~~ 287 (485)
..+
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-12 Score=118.52 Aligned_cols=217 Identities=11% Similarity=-0.011 Sum_probs=182.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL-KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
.+++++..++...... +.+...+..+...+...|++ ++|.+.|++..+.. +.+...+..+...+... |++++|...
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~-g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK-GDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 3577777888776643 45788899999999999999 99999999999865 23467788888888887 999999999
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHHc---------CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--------CC
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCRL---------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--------KS 241 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 241 (485)
|++..+.. |+...+..+..++... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99999874 5678899999999999 99999999999998864 33678889999999988 99
Q ss_pred HHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 242 VEEAMRLFEEMRSKGVE--PNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
+++|+..|++..+.... .+...+..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986321 47888999999999999999999999999887543 6778888899999999999999877
Q ss_pred HHHh
Q 011463 320 DRMK 323 (485)
Q Consensus 320 ~~~~ 323 (485)
.++.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 6553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=118.31 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=115.9
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhc-------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc------C
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKE-------KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF------G 115 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 115 (485)
+..++..++..+...|++++|..+++++.+. .......++..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888888888888888888888763 22224566777888888888888888888887653 1
Q ss_pred -CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC--
Q 011463 116 -CEPTPKSYITVLAILVEENQLKLAFRFYRHMREI------GIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNR-- 185 (485)
Q Consensus 116 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-- 185 (485)
.+....++..+...+...|++++|...++++.+. +..|. ...+..+...+... |++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 1223556777778888888888888888887653 21222 23444555555555 7788877777776653
Q ss_pred ----CCCC-CHHhHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011463 186 ----GCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMET 219 (485)
Q Consensus 186 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 219 (485)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 344566777777777777777777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-11 Score=107.40 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=171.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhhHHHH
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSKGV-EPN----VFTYSSL 267 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 267 (485)
....+...|++++|...+++........+. ..+..+...+...|++++|...+++..+... ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 344455667777777776666554221111 1344555566667777777777766554210 011 1234556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCC----CCHHhHHH
Q 011463 268 MDGLCKGGCSSQAMELLQMMISK----RHR--P-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLK----PDAGLYGK 336 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 336 (485)
...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 66777788888888888776653 111 1 2334556777788888888888888887654211 12346777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-cccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc---chhhHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRL-TWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV---DSLTYS 411 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~ 411 (485)
+...+...|++++|...+++.......++.. .+. ..........+... ++++|...+++.......+ ....+.
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI--SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH--HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 8888889999999999999887642222211 111 00000122224455 9999999999887654321 123466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 412 SLITCFCKKGDIHKSARIVDELVLD----GCLPDE-GTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 412 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
.+...+...|++++|...++++... |..++. ..+..+..++...|+.++|...++++++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7788999999999999999988653 222222 25556777888999999999999998764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.3e-11 Score=107.00 Aligned_cols=231 Identities=9% Similarity=0.016 Sum_probs=159.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC----C-CC-CHHh
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIGI-QPC----VASLNVLIKALCKNSGTMDAAFKIFREMPNRG----C-TP-DSYT 193 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~-~~-~~~~ 193 (485)
.....+...|++++|...|++..+... .++ ...+..+...+... |+++.|...+++..+.. . .+ ...+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 344556678888888888888775311 122 23455555566666 88888888887776531 1 11 2456
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK----ACS-PTVVTYTSLINGLCQSKSVEEAMRLFEEMRS-----KGVEPNVFT 263 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 263 (485)
++.+..+|...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 778888889999999999888887653 111 1234677788888899999999999988876 43 223667
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHHhHCCCCCCHHhHHH
Q 011463 264 YSSLMDGLCKGGCSSQAMELLQMMISKRH----RPNIVTYSTLLNGLCKEGK---LQEAVEILDRMKLQGLKPDAGLYGK 336 (485)
Q Consensus 264 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (485)
+..+..++.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++.... .+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHH
Confidence 78888899999999999999999877422 1123345555666667777 7777777765221 1122346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+...|...|++++|...+++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-11 Score=120.42 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=130.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.++.+|+.+..++.+.|++++|++.|+++++..+. +..++..+..+|.+.|++++|+..|++..+.+ +.+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445678888888888888888888888888887765 67788888888888888888888888887764 4457788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
..++...|++++|.+.|++..+.. +-+...++.+...+... |++++|+..|++..+.... +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDS-GNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 888888888888888888888754 22355666666666666 8888888888888876433 67778888888888888
Q ss_pred HhHHHHHHHHHHH
Q 011463 207 IYEAKELFKEMET 219 (485)
Q Consensus 207 ~~~a~~~~~~~~~ 219 (485)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-11 Score=108.10 Aligned_cols=296 Identities=10% Similarity=0.015 Sum_probs=204.1
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHH--HHhcCCcchHH---------HHHHHHhhcCCCCCH----
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISK--LVSANQFRPAE---------DLLDRVNKEKCDITE---- 85 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~g~~~~a~---------~~~~~~~~~~~~~~~---- 85 (485)
...+++++|.++++.+.... .....| ...|..++.. ..-.+.+..+. +.++.+.....+.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~-~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDI-QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHG-GGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 67999999999999887432 222233 3334444332 22234444444 777766543211111
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCC-CC----CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-C
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EP----TPKSYITVLAILVEENQLKLAFRFYRHMREIG--I---QP-C 154 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~---~~-~ 154 (485)
..+......+...|++++|+..|++..+... .+ ...++..+..++...|+++.|...+++..+.. . .+ .
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 1233455667889999999999999875411 12 24567888999999999999999999987531 1 11 1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHH-----CCCCC
Q 011463 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRLGKIYEAKELFKEMET-----KACSP 224 (485)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 224 (485)
..+++.+...+... |++++|...+++..+. +.. ....++..+..+|...|++++|.+.|++... .. +.
T Consensus 182 ~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~ 259 (378)
T 3q15_A 182 IQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DL 259 (378)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GG
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hh
Confidence 34556666677776 9999999999888763 111 1245778899999999999999999999876 32 23
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHcCCC---hHHHHHHHHHHHhCCCCC-Ch
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----VEPNVFTYSSLMDGLCKGGC---SSQAMELLQMMISKRHRP-NI 296 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~ 296 (485)
...++..+..++.+.|++++|...+++..+.. .+.....+..+...+...++ ..+|+..++. .+..+ ..
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~ 336 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE 336 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence 36778889999999999999999999987642 12223445666667778888 7777777765 22222 23
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 297 VTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 297 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 337 ACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566788899999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-10 Score=104.85 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHhcCC-CCC----HhhHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITED----IFLSICRGYGRVHRPLDAMRVFDKMKEFGC-EPT----PKSYI 124 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 124 (485)
......+...|++++|...+++.....+..+.. ++..+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445556677777777777666554322221 344555566666777777777666544210 011 12244
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCC----CCHHh
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI----GIQ--PC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCT----PDSYT 193 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 193 (485)
.+...+...|++++|...+++..+. +.. |. ...+..+...+... |++++|...+++..+.... ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5555666667777777666665542 111 11 12233333444444 6666666666665543211 12234
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh-hhHH-----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhhH
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETKACSPTV-VTYT-----SLINGLCQSKSVEEAMRLFEEMRSKGVEPN---VFTY 264 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 264 (485)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666666666666666665432111110 1111 122234455666666666655543321110 1123
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHH
Q 011463 265 SSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 265 ~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
..+...+...|++++|...++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=96.60 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=91.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444555555555555555555555544332 44555555555555566666666665555442 334555555555566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHH
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAK 211 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 211 (485)
..|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.+... .+...+..+..++...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNL-GRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655543 22344444444555554 666666666666655432 24556666666666666666666
Q ss_pred HHHHHHHHC
Q 011463 212 ELFKEMETK 220 (485)
Q Consensus 212 ~~~~~~~~~ 220 (485)
+.+++..+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-11 Score=95.46 Aligned_cols=161 Identities=11% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.+. ...+.+..++..++..+...|++++|.+.++++....+. +...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 87 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVY----DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTC----CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH----HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 44555556666666666666665 223345555666666666666666666666666555433 4555556666666
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAF 176 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 176 (485)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+... |++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQM-GRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHc-CCHHHHH
Confidence 6666666666666665543 3345555556666666666666666666665543 22344455555555554 6666666
Q ss_pred HHHHhhhhC
Q 011463 177 KIFREMPNR 185 (485)
Q Consensus 177 ~~~~~~~~~ 185 (485)
..++.+.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-11 Score=118.17 Aligned_cols=163 Identities=10% Similarity=0.100 Sum_probs=143.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
++..+..++.++|++++|++.|+++++ -.|.+..+|..+..+|.+.|++++|++.|+++++.++. +...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALE----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 467789999999999999999999993 33567899999999999999999999999999999876 7899999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
++.+.|++++|++.|++..+.+ +.+..+|..+..++...|++++|++.|++.++.. +-+...+..+...+... |+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~-g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIV-CDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT-TCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhc-ccHH
Confidence 9999999999999999999875 4568899999999999999999999999999865 22456677777777777 9999
Q ss_pred HHHHHHHhhhh
Q 011463 174 AAFKIFREMPN 184 (485)
Q Consensus 174 ~a~~~~~~~~~ 184 (485)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-10 Score=94.76 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=120.3
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
.|+..+...+..+...|++++|.+.|+++....+.++...+..+..++...|++++|+..|++..+.+ +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45566777777777777777777777777776653466666667777777777777777777777653 33456677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC---HHhHHH
Q 011463 128 AILVEENQLKLAFRFYRHMREIGIQPC-V-------ASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD---SYTYGT 196 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 196 (485)
.++...|++++|...+++..+.. |+ . ..+..+...+... |++++|...++++.+. .|+ ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQA-GNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHh-ccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 77777777777777777777644 33 2 2344444455555 7778888877777765 232 455666
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
+..+|...| ...++++...+. .+...+.... ....+.+++|...+++..+.
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666665433 233444433321 1223332222 22345577788888877765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-10 Score=95.66 Aligned_cols=201 Identities=16% Similarity=0.077 Sum_probs=138.2
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHH
Q 011463 153 PCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSL 232 (485)
Q Consensus 153 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (485)
.++..+......+... |++++|...|+...+...+++...+..+..++...|++++|++.|++..+... .+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3456666666677776 88888888888888875535777777788888888888888888888887632 256677888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCC--ChhhHHHHH
Q 011463 233 INGLCQSKSVEEAMRLFEEMRSKGVEPNV-------FTYSSLMDGLCKGGCSSQAMELLQMMISKRHRP--NIVTYSTLL 303 (485)
Q Consensus 233 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 303 (485)
..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.++++++.. +. +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 888888888888888888888763 2234 446677777788888888888888887752 12 245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRL 367 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 367 (485)
.+|...| ...++.+...+ ..+...+.... ....+.+++|...+++..+. .|+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 6665433 33445554443 22344444333 23456679999999999874 45543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=107.55 Aligned_cols=98 Identities=21% Similarity=0.171 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC------C-C
Q 011463 262 FTYSSLMDGLCKGGCSSQAMELLQMMISK------R-HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ------G-L 327 (485)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 327 (485)
.++..+...|...|++++|...++++... . .+....++..+...+...|++++|...+++..+. + .
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445555555555555555555554432 0 1112445556666666667777776666665543 1 1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
+....++..+..+|...|++++|...++++.+
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345677777778888888888888877765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-09 Score=96.21 Aligned_cols=377 Identities=10% Similarity=0.028 Sum_probs=202.5
Q ss_pred cC-CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-hh
Q 011463 25 EK-DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR-PL 102 (485)
Q Consensus 25 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 102 (485)
.| ++..|+.+|+.++... |. |+++.+..+|++.... -|+...|...+....+.+. .+
T Consensus 7 ~~~~i~~aR~vyer~l~~~-----P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~ 65 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY-----MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKF 65 (493)
T ss_dssp -----CCHHHHHHHHHHHH-----HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----
T ss_pred cCcchHHHHHHHHHHHHHC-----CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHH
Confidence 45 3667777777776321 11 6778888888887775 3477777777766655553 35
Q ss_pred hHHHHHHHHHhc-CC-CCCHhhHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCCChHH
Q 011463 103 DAMRVFDKMKEF-GC-EPTPKSYITVLAILV----EENQLKLAFRFYRHMREIGIQPC-V-ASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 103 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~~ 174 (485)
....+|+..... |. +.+...|...+..+. ..++.+.+..+|++.+.. ++. . ..|..... +... .....
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~-~~~~~ 141 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELE-LNKIT 141 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHH-HCHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHH-hcccc
Confidence 566677766543 32 235566776666543 345677777788877762 221 1 11111111 1111 11222
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc--C-----CHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQS--K-----SVEEAMR 247 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~-----~~~~a~~ 247 (485)
+.+++.+.. +.+..|..+++.+...-...+...|...+.--... + ..+.+..
T Consensus 142 ~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 142 GKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 222222211 11222222222222110000122333333221111 0 0334556
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC-
Q 011463 248 LFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG- 326 (485)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 326 (485)
+|+++.... +.+...|...+..+.+.|+.+.|..++++++.. +.+...+. .|....+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~ 270 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHH
Confidence 777766642 445666766777777777888888888877776 22322222 12211111111 22221110
Q ss_pred --------C---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHH
Q 011463 327 --------L---KPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVY 395 (485)
Q Consensus 327 --------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 395 (485)
. .....+|...+....+.++.+.|..+|+++ + .|. .++. .-+..+.+......+++.|..+|
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~---~~~-~~~~--v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G---NEG-VGPH--VFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T---TSC-CCHH--HHHHHHHHHHHHHCCSHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h---CCC-CChH--HHHHHHHHHHHHCCChHHHHHHH
Confidence 0 011245666666666788899999999998 3 122 1221 11111233333333789999999
Q ss_pred HHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 396 LSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+...+..+. ++..|...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++++
T Consensus 344 e~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 998875433 45566777887888999999999999973 2466788877766788999999999998875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=102.43 Aligned_cols=227 Identities=13% Similarity=0.007 Sum_probs=154.0
Q ss_pred HHcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC------CC-CCCHHhHHH
Q 011463 131 VEENQLKLAFRFYRHMREI-------GIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR------GC-TPDSYTYGT 196 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 196 (485)
...|++++|..++++..+. ..+.....+..+...+... |++++|...++++.+. +. +....++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3467777777777776652 1122345566677777776 9999999999998764 22 224567888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCC-------CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHh
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKA-------CSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK------G-VEPNVF 262 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~ 262 (485)
+..++...|++++|.+.|++..... .+....++..+...+...|++++|...+++..+. + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999987641 1234567888889999999999999999998764 1 122356
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHhC-------CCCCC-hhhHHHHHHHHHhcCCHH------HHHHHHHHHhHCCCC
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMISK-------RHRPN-IVTYSTLLNGLCKEGKLQ------EAVEILDRMKLQGLK 328 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~ 328 (485)
++..+..+|...|++++|...++++.+. ...+. ...+..+...+...+... .+...+..... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7788889999999999999999998763 11222 233333333333333322 22222222111 112
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 329 PDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 329 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
....++..+..+|...|++++|..++++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788899999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=99.60 Aligned_cols=213 Identities=12% Similarity=-0.011 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 011463 241 SVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK----RHRP-NIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 241 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 315 (485)
++++|...+.+. ...|...|++++|...|.+.... +.++ ...++..+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 23455667777777777666543 1111 145667777777777888877
Q ss_pred HHHHHHHhHCCC---CC--CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-Ch
Q 011463 316 VEILDRMKLQGL---KP--DAGLYGKIISCFCDI-GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DP 388 (485)
Q Consensus 316 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 388 (485)
...+++..+... .+ ...++..+..+|... |++++|+..+++..+. .|+.........++..+...+... ++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 777777654310 01 134678888899986 9999999999998863 232111111123444677777777 99
Q ss_pred hHHHHHHHHHHhCCCccchh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHH--h
Q 011463 389 NRAFQVYLSMRNRSISVDSL------TYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEG------TWSAVMTALW--D 454 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~ 454 (485)
++|...|+++.+..+..... .|..+..++...|++++|+..|++..+. .|+.. .+..++.++. .
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCC
Confidence 99999999999875543221 5677888899999999999999999864 34322 2344555554 4
Q ss_pred cCcHHHHHHHHHHHHHcC
Q 011463 455 RRKMRQAAELLLLELMNK 472 (485)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~ 472 (485)
.+++++|++.++++++.+
T Consensus 253 ~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHhccCCccH
Confidence 577999999988776643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-11 Score=91.55 Aligned_cols=142 Identities=10% Similarity=0.070 Sum_probs=112.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
|..++...|++++|+..++.+. ...|.++..+..+...|.+.|++++|++.|+++++.++. +..+|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~----~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST----PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS----CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhc----ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4566788899999999999988 333445667888999999999999999999999999876 88999999999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF-YRHMREIGIQPCV-ASLNVLIKALCK 167 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~-~~~~~ll~~~~~ 167 (485)
.|++++|+..|++..+.+ |.+..++..+..++.+.|+++++.+. +++..+.. |+. ..+......+..
T Consensus 78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHH
Confidence 999999999999999875 45688899999999999998776654 58888754 544 444444444333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-08 Score=86.59 Aligned_cols=244 Identities=12% Similarity=0.068 Sum_probs=149.2
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH 99 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 99 (485)
+-..-.|+++.++.-...+. . .........+.++++..|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~-----~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~ 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS-----K-VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS-----C-CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT
T ss_pred HHHHHhhHHHHHHHHHHhcC-----c-cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc
Confidence 33445788888887443332 1 11223344456888888887742 11223333444443333 222
Q ss_pred ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 100 RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 100 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|+..|+++.+.+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+. |+.+.|.+.
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~ 158 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTI 158 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHH
Confidence 677777777654 45566666777888888888888888888766552 12445566666777776 888888888
Q ss_pred HHhhhhCCCCC-----CHHhHHHHHHH--HHHcC--CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 179 FREMPNRGCTP-----DSYTYGTLING--LCRLG--KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 179 ~~~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
++.|.+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|...+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 8888765 34 24455555555 33334 788888888887654 334233344445777888888888888
Q ss_pred HHHHhCC---------CCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 250 EEMRSKG---------VEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 250 ~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+.+.+.. -+-++.++..++......|+ +|.++++++.+..
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 7665420 02355566455555555665 7778888887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-10 Score=92.32 Aligned_cols=159 Identities=9% Similarity=-0.017 Sum_probs=84.8
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHH----------------HHHHHHhcCCcchHHHHHHHHhhcCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSL----------------MISKLVSANQFRPAEDLLDRVNKEKC 81 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~ 81 (485)
.+..+...|++++|+..|++++. ..|.++..|.. +..++.+.|++++|...|+++++..|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 34556678888888888888772 22334555555 56666666666666666666666654
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 82 DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ--LKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
. +...+..+..++...|++++|+..|++..+.+ |.+..++..+..++...|+ ...+...+..... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 4 55666666666666666666666666666553 3345555555555544332 2233333433321 111111111
Q ss_pred HHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 160 VLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 160 ~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
.....+... |++++|...|++..+.
T Consensus 162 ~~g~~~~~~-~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 162 RDGLSKLFT-TRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHH-HTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence 122222333 5566666666665554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-09 Score=88.87 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 175 AFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKAC-SPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 175 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 22333444555555555555555555555544322 1133444455555555555555555555555
Q ss_pred hCCCCC-----CHhhHHHHHHHHH----cCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 254 SKGVEP-----NVFTYSSLMDGLC----KGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 254 ~~~~~~-----~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
+. .| +..+...++.++. ..+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 1233333333321 122556666666665443 12222222333355566666666666654433
Q ss_pred CC---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 325 QG---------LKPDAGLYGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 325 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
.. -+.++.++..++......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 10 02244445444444444454 55566666655
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=94.72 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCC---CC--CHHHHHHHHHHHhccCCh
Q 011463 27 DVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKC---DI--TEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 27 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~ 101 (485)
++++|...|+++. ..|...|++++|.+.|++...... .+ ...++..+..+|.+.|++
T Consensus 32 ~~~~A~~~~~~a~------------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQAA------------------TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHH------------------HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 4777888777663 245677888888888877765421 11 145777888888888888
Q ss_pred hhHHHHHHHHHhcCC---CC--CHhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC
Q 011463 102 LDAMRVFDKMKEFGC---EP--TPKSYITVLAILVEE-NQLKLAFRFYRHMREIGIQ-PC----VASLNVLIKALCKNSG 170 (485)
Q Consensus 102 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~ 170 (485)
++|+..|++..+... .+ -..++..+..+|... |++++|...|++..+.... .+ ..++..+...+... |
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g 172 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD-G 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh-C
Confidence 888888887765310 01 134677778888885 8888888888887763210 01 24566667777776 8
Q ss_pred ChHHHHHHHHhhhhCCCCCCH------HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-C---hhhHHHHHHHHH--c
Q 011463 171 TMDAAFKIFREMPNRGCTPDS------YTYGTLINGLCRLGKIYEAKELFKEMETKACSP-T---VVTYTSLINGLC--Q 238 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~ll~~~~--~ 238 (485)
++++|...|++..+....... ..+..+..++...|++++|...|++..+..... + ...+..++.++. .
T Consensus 173 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~ 252 (292)
T 1qqe_A 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (292)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence 888888888888776432221 156677778888888888888888876532110 1 112344555554 4
Q ss_pred cCCHHHHHHHHHHHHh
Q 011463 239 SKSVEEAMRLFEEMRS 254 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~ 254 (485)
.+++++|+..|+.+..
T Consensus 253 ~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 253 SEQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhccCCc
Confidence 5668888888766654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-10 Score=110.04 Aligned_cols=175 Identities=11% Similarity=0.011 Sum_probs=84.2
Q ss_pred HccCCHHHHHHHHHHhhh----hhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 23 RAEKDVNKALVIFDSATA----EYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
...|++++|++.|++++. ......+.+...+..+...+...|++++|.+.|+++.+.++. +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 445555555555555540 000122334445555555555555555555555555555443 445555555555555
Q ss_pred CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKI 178 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 178 (485)
|++++|+..|++..+.+ +.+...+..+..++...|++++ .+.|++..+.+ +.+...+..+...+... |++++|...
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~-g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAE-GDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 55555555555555543 2234455555555555555555 55555555433 12233444444444444 555555555
Q ss_pred HHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 179 FREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
|+++.+.+.. +...+..+..++..
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHc
Confidence 5555544211 23344444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=82.85 Aligned_cols=128 Identities=9% Similarity=0.140 Sum_probs=90.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+.+|+.+.. ..+.+...+..++..+...|++++|...++++....+. +...+..+...+
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 79 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALE----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH----cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 3456667777788888888877762 22445667777777777777778888777777766543 566677777777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777776653 345666777777777777777777777777654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-09 Score=91.95 Aligned_cols=103 Identities=9% Similarity=0.056 Sum_probs=73.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCCHh
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPTPK 121 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 121 (485)
+.++..+..++..+.+.|++++|.+.|+.++...+. + ...+..+..+|.+.|++++|+..|++..+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 445667777777788888888888888888777554 3 56677777788888888888888888777531 11244
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHcC
Q 011463 122 SYITVLAILVE--------ENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 122 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 150 (485)
++..+..++.. .|++++|...|+++.+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 56666777777 778888888888877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-09 Score=88.18 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=97.5
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH----------------HHHHHhccCChhhHHHHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS----------------ICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
++..+...+..+...|++++|...|+++....|. +...+.. +..++.+.|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555677788899999999999998887544 4555655 6666777777777777777776
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC--hHHHHHHHHhhhhCCCCCC
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT--MDAAFKIFREMPNRGCTPD 190 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 190 (485)
+.+ |.+...+..+..++...|++++|...|++..+.. +.+...+..+...+... |+ ...+...++.... ..|.
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT-AEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-HHHHHHHHHHHHC---C--CCHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhC--CCch
Confidence 654 3456666777777777777777777777776644 12333444444443332 22 2333444433322 1222
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+.....++...|++++|...|++..+.
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 223333444555566666666666666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-08 Score=85.03 Aligned_cols=221 Identities=10% Similarity=0.077 Sum_probs=156.6
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC--CcchHHHHHHHHhhcCCCCCHHHHHHHHHHH----hcc
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN--QFRPAEDLLDRVNKEKCDITEDIFLSICRGY----GRV 98 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 98 (485)
....++|+.+++.++ .-.|.+..+|+....++...| +++++++.++.++..+|+ +..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L----~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 46 EEYSERALHITELGI----NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 334468888888888 233556677888888888888 888888888888888776 666776655555 444
Q ss_pred ---CChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC--
Q 011463 99 ---HRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK--LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-- 171 (485)
Q Consensus 99 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-- 171 (485)
+++++++.+++++.+.. +.+..+|+...-++.+.|.++ ++++.++++.+... -+...|+.-...+... +.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l-~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK-KHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS-GGGC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc-cccc
Confidence 67888888888888765 557778887777777788877 88888888887652 3555666555544444 54
Q ss_pred ----hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHH
Q 011463 172 ----MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE-AKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEE 244 (485)
Q Consensus 172 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~ 244 (485)
++++++.++.+....+. |...|+.+...+.+.|+... +..+..++...+ -+.+...+..+..++.+.|+.++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 77788888877776544 77788877777777777443 445555554432 13356677777777777788888
Q ss_pred HHHHHHHHHh
Q 011463 245 AMRLFEEMRS 254 (485)
Q Consensus 245 a~~~~~~~~~ 254 (485)
|.++++.+.+
T Consensus 277 A~~~~~~l~~ 286 (306)
T 3dra_A 277 SRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887775
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-09 Score=89.48 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccc
Q 011463 295 NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPD---AGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (485)
+...+..+...+...|++++|...|+++.+.. +.+ ...+..+..+|...|++++|...|++..+.. |+....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~-- 88 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRV-- 88 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTH--
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchh--
Confidence 45556666677777888888888888877753 223 5667777778888888888888888887742 332111
Q ss_pred hhhhHHHHHHHHhc--------C-ChhHHHHHHHHHHhCCCccchhhH-----------------HHHHHHHHhcCCHHH
Q 011463 372 HIRIHNTVVQGLCK--------T-DPNRAFQVYLSMRNRSISVDSLTY-----------------SSLITCFCKKGDIHK 425 (485)
Q Consensus 372 ~~~~~~~l~~~~~~--------~-~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~ 425 (485)
..++..+...+.. . ++++|...|+++.+..+. +.... ..+...|...|++++
T Consensus 89 -~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 -PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp -HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 1222245555555 5 899999999999886544 33333 456888999999999
Q ss_pred HHHHHHHHHhCCCCCC----hhhHHHHHHHHHhc----------CcHHHHHHHHHHHHHcCCCcc
Q 011463 426 SARIVDELVLDGCLPD----EGTWSAVMTALWDR----------RKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 426 a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 476 (485)
|+..|+++++. .|+ ...+..+..+|... |++++|+..++++++..+..+
T Consensus 167 A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 167 AAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 99999999986 343 34566777788766 999999999999999876554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-09 Score=106.98 Aligned_cols=172 Identities=12% Similarity=-0.013 Sum_probs=98.2
Q ss_pred HhcCCcchHHHHHHHHh--------hcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 61 VSANQFRPAEDLLDRVN--------KEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...|++++|++.++++. ...+. +...+..+...+...|++++|+..|++..+.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666666 43333 45566666666666666666666666666543 3355666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKE 212 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 212 (485)
.|++++|.+.|++..+.. +-+...+..+...+... |++++ ...|+++.+.+.. +...+..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~-g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA-GNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH-TCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc-CChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666643 11333444444445554 66666 6666666655322 45566666666666666666666
Q ss_pred HHHHHHHCCCCCC-hhhHHHHHHHHHccC
Q 011463 213 LFKEMETKACSPT-VVTYTSLINGLCQSK 240 (485)
Q Consensus 213 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~~ 240 (485)
.|++..+. .|+ ...+..+..++...+
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccC
Confidence 66665543 222 344444455544433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.6e-09 Score=78.73 Aligned_cols=127 Identities=11% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..++..+...|++++|..+++++....+. +...+..+...+...|++++|...++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 344444555555555555555555444332 34444444455555555555555555544432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhh
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMP 183 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 183 (485)
.|++++|.+.++++.+.. +.+...+..+...+... |++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ-GDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHH-ccHHHHHHHHHHHH
Confidence 444444444444444432 11223333333333333 44444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=86.15 Aligned_cols=158 Identities=9% Similarity=0.071 Sum_probs=77.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-H
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-Y 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 95 (485)
..+..+...|++++|+..|++++. ..|.++..+..+..++...|++++|...++.+....+ +...+..+... +
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD----ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH----HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 445556666666666666666552 2244555666666666666666666666666655433 33222221111 1
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCChHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQP-CVASLNVLIKALCKNSGTMDA 174 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~ 174 (485)
...+....|+..+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+...+... |+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~-g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL-GQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH-CSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh-CCCCc
Confidence 11122233455555555442 2234555555555555555555555555555533111 122344444444444 55555
Q ss_pred HHHHHHhh
Q 011463 175 AFKIFREM 182 (485)
Q Consensus 175 a~~~~~~~ 182 (485)
|...|++.
T Consensus 163 A~~~y~~a 170 (176)
T 2r5s_A 163 IASKYRRQ 170 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-09 Score=85.93 Aligned_cols=162 Identities=10% Similarity=0.060 Sum_probs=105.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI- 129 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 129 (485)
..+......+...|++++|...|+++....|. +...+..+..++...|++++|+..|++..... |++..+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 34556677778888888888888888777655 67778888888888888888888888877653 344333322212
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcCCH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLGKI 207 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 207 (485)
+...+....+...+++..+.. |+ ...+..+...+... |++++|...|+++.+..+.+ +...+..+..++...|+.
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN--PDNFELACELAVQYNQV-GRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 122223334566777766643 43 45555555555555 77777777777777664332 245666777777777777
Q ss_pred hHHHHHHHHHH
Q 011463 208 YEAKELFKEME 218 (485)
Q Consensus 208 ~~a~~~~~~~~ 218 (485)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777776654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-09 Score=90.19 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH-H
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT-V 126 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 126 (485)
.+...+..+...+...|++++|.+.|+++....+. +...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34445555555566666666666666666655544 45555556666666666666666666555432 33322221 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC-CHHhHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP-DSYTYGTLINGLCRLG 205 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 205 (485)
...+...++.+.|...+++..... +.+...+..+...+... |++++|...+.++.+..... +...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~-g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQV-GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222444455555555555555543 12233344444444444 56666666665555543221 1344555555555555
Q ss_pred CHhHHHHHHHHH
Q 011463 206 KIYEAKELFKEM 217 (485)
Q Consensus 206 ~~~~a~~~~~~~ 217 (485)
+.++|...|++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-07 Score=81.43 Aligned_cols=232 Identities=10% Similarity=0.033 Sum_probs=125.9
Q ss_pred HHHHhcCCc-chHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH----
Q 011463 58 SKLVSANQF-RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH--RPLDAMRVFDKMKEFGCEPTPKSYITVLAIL---- 130 (485)
Q Consensus 58 ~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 130 (485)
++..+.|.+ ++|+++++.++..+|. +..+|+.-..++...| +++++++.++.+...+ |-+..+|+.-..++
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 333445544 5888888888888776 7778888888887777 8888888888888764 34555665554444
Q ss_pred HHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 131 VEE---NQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD--AAFKIFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 131 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
... +++++++++++++.+.. +-+...|+.-.-.+... |.++ ++++.++.+.+.++. |...|+.-..++...+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l-~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTF-DLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 333 55666666666666544 22344444444333343 5555 666666666655433 5555555444444444
Q ss_pred CHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHH-HHHHH
Q 011463 206 KIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQ-AMELL 284 (485)
Q Consensus 206 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 284 (485)
... ....++++++.++.+.... +-|...|+.....+.+.|+... +..+.
T Consensus 195 ~~~-----------------------------~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 195 HLA-----------------------------TDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp GGC-----------------------------CHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ccc-----------------------------hhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 300 0000444444444444432 2244444444444444444222 33333
Q ss_pred HHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhH
Q 011463 285 QMMISKR--HRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKL 324 (485)
Q Consensus 285 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 324 (485)
..+...+ ...+...+..+...+.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3333221 122445555555555555666666666666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-08 Score=81.78 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011463 85 EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN----QLKLAFRFYRHMREIGIQPCVASLNV 160 (485)
Q Consensus 85 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 160 (485)
+..+..+...|...+++++|+..|++..+.| ++.++..+...|.. + ++++|.++|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444444444444444444332 33333333333333 3 4444444444444332 2222222
Q ss_pred HHHHHHh----cCCChHHHHHHHHhhhhCCCC-CCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHH
Q 011463 161 LIKALCK----NSGTMDAAFKIFREMPNRGCT-PDSYTYGTLINGLCR----LGKIYEAKELFKEMET 219 (485)
Q Consensus 161 ll~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 219 (485)
+-..+.. . +++++|..+|++..+.|.. .....+..|..+|.. .+++++|..+|++..+
T Consensus 91 Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 91 LARVLVNRQAGA-TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHTCGGGSS-CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCc-cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 3222222 2 4444555555444444311 013344444444444 4444555555554444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=83.61 Aligned_cols=176 Identities=12% Similarity=0.048 Sum_probs=141.9
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC----ChhhH
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH----RPLDA 104 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 104 (485)
.+|++.|+++. .. -++.++..+...|...+++++|.++|++..+.+ +...+..+...|.. + ++++|
T Consensus 3 ~eA~~~~~~aa---~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQA---EA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHH---HT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred chHHHHHHHHH---HC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 35778888887 33 478888999999999999999999999998864 67888888888887 6 89999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh----cCCChH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPC---VASLNVLIKALCK----NSGTMD 173 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~----~~~~~~ 173 (485)
+.+|++..+.| ++.++..+...|.. .+++++|.++|++..+.+ |+ ...+..+-..+.. . ++++
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~-~d~~ 146 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGP-EDDV 146 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSS-CCHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCC-CCHH
Confidence 99999998764 77888888888877 889999999999999876 42 5666666666666 5 7899
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc-C-----CHhHHHHHHHHHHHCCC
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRL-G-----KIYEAKELFKEMETKAC 222 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 222 (485)
+|...|++..+. ..+...+..|..+|... | ++++|..+|++..+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999886 22445677788887754 3 89999999999887753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.8e-08 Score=83.76 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=94.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH--HHHHHHHHHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE--DIFLSICRGY 95 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 95 (485)
++..+...|++++|+..|+.++.. ....+.....+..++.++.+.|++++|++.|+++.+..|.... ..+..+..++
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 445556666666666666666621 0010111245555566666666666666666666655443111 1233333333
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
...|.. .+ ..|..+...+...|++++|...|+++++.. |+..........+..
T Consensus 89 ~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~-------- 141 (225)
T 2yhc_A 89 MALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF-------- 141 (225)
T ss_dssp HHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH--------
T ss_pred Hhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH--------
Confidence 322110 00 001111122223456666666666666543 332211111000000
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP--TVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
+...+ ......+...|.+.|++++|...|+++.+..... ....+..+..++.+.|++++|...++.+.
T Consensus 142 --~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 142 --LKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp --HHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 00000 0111345666777777777777777776652111 12456667777777777777777777776
Q ss_pred hCC
Q 011463 254 SKG 256 (485)
Q Consensus 254 ~~~ 256 (485)
..+
T Consensus 212 ~~~ 214 (225)
T 2yhc_A 212 ANS 214 (225)
T ss_dssp HCC
T ss_pred hhC
Confidence 653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=84.01 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=96.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
....++.++...|++++|+..|++++.. .|.++ .++..+..++...|.. . ...+..
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~~~~~~~a~~~~g~~~~~~~~~-----~------------~~~~~~ 101 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRL----NPTHPNIDYVMYMRGLTNMALDDS-----A------------LQGFFG 101 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCTTHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCCcHHHHHHHHHHHHHhhhhh-----h------------hhhhhc
Confidence 4566788999999999999999999942 12222 3566666666654421 1 112233
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG 170 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 170 (485)
+...+...|++++|+..|+++.+.. |.+...+....... .+...+.. ....+...+.+. |
T Consensus 102 ~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~~--------~~~~~a~~~~~~-~ 161 (225)
T 2yhc_A 102 VDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLAK--------YEYSVAEYYTER-G 161 (225)
T ss_dssp ------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHH-T
T ss_pred cchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHHH--------HHHHHHHHHHHc-C
Confidence 4444556778888888888887753 22333332221110 00011100 112233445565 8
Q ss_pred ChHHHHHHHHhhhhCCCCC--CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 011463 171 TMDAAFKIFREMPNRGCTP--DSYTYGTLINGLCRLGKIYEAKELFKEMETKA 221 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 221 (485)
++++|...|+.+.+..+.. ....+..+..++.+.|++++|.+.++.+...+
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 8888888888887763221 12467778888888888888888888877663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.3e-09 Score=90.45 Aligned_cols=160 Identities=14% Similarity=0.030 Sum_probs=130.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+.+.|++++|+..|++++. ..|.++..+..++..+...|++++|...++++....+. ...........+
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~~~~l 195 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQ----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHHHHHH
Confidence 4566778899999999999999993 34667889999999999999999999999999887653 223333334456
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCCh
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC---VASLNVLIKALCKNSGTM 172 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 172 (485)
...++.+.|+..+++..... |.+...+..+...+...|++++|...|.++.+.. |+ ...+..+...+... |+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~~-g~~ 271 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAAL-GTG 271 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHHH-CTT
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHHc-CCC
Confidence 77888999999999998875 5678899999999999999999999999999865 44 45677777777777 999
Q ss_pred HHHHHHHHhhhh
Q 011463 173 DAAFKIFREMPN 184 (485)
Q Consensus 173 ~~a~~~~~~~~~ 184 (485)
+.|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999988887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-10 Score=84.67 Aligned_cols=143 Identities=15% Similarity=0.004 Sum_probs=73.9
Q ss_pred HHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH
Q 011463 58 SKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK 137 (485)
Q Consensus 58 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 137 (485)
..+...|++++|++.++......+. +...+..+...|.+.|++++|++.|++..+.+ |.+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 3444555666666666665544322 33344455666666666666666666665543 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH-HHHhhhhCCCCCCHHhHHHHHHHHHHcC
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK-IFREMPNRGCTPDSYTYGTLINGLCRLG 205 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 205 (485)
+|...|++..+.. +-+...+..+...+.+. |+++++.+ ++++..+..+. ++.+|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKN-DVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-CSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666543 11234444444455554 55544433 33555544222 4445554444444444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-06 Score=81.56 Aligned_cols=312 Identities=11% Similarity=0.007 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC-cchHHHHHHHHhhc-CCC-CCHHHHHHHHHHHhc----c
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ-FRPAEDLLDRVNKE-KCD-ITEDIFLSICRGYGR----V 98 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~ 98 (485)
|+++.+..+|++++ . ..|++..|...+....+.+. .+....+|+.+... |.. .+...|...+..+.. .
T Consensus 28 ~~~e~~~~iferal----~-~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCL----K-KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHS----T-TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHh----c-cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 89999999999999 2 34699999999888877763 46678888887764 322 367888888876542 4
Q ss_pred CChhhHHHHHHHHHhcCCCCC--HhhHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 99 HRPLDAMRVFDKMKEFGCEPT--PKSYITVLAILVE-------------ENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
|+.+.+..+|++.+.. |+. ...|......-.. .+.+..|..+++.+...--..+...|...+.
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID 180 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 6788899999999873 322 2223322221111 1122233333333332100012234444443
Q ss_pred HHHhcC-CC-----hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 011463 164 ALCKNS-GT-----MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLC 237 (485)
Q Consensus 164 ~~~~~~-~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 237 (485)
.--... +- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++.... +.+...+.. |.
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~ 253 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YG 253 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HH
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HH
Confidence 321110 00 234556677766643 235666777777777777777777777777765 222222211 11
Q ss_pred ccCCHHHHHHHHHHHHhCC---------C---CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 238 QSKSVEEAMRLFEEMRSKG---------V---EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305 (485)
Q Consensus 238 ~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (485)
.....++. ++.+.+.- . ......|...+....+.++.+.|..+|+.+ .. ...+...|......
T Consensus 254 ~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~l 328 (493)
T 2uy1_A 254 LVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFI 328 (493)
T ss_dssp HHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHH
T ss_pred hhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHH
Confidence 11110111 11111100 0 001133444444444555566666666666 21 11222333221111
Q ss_pred HHh-cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 306 LCK-EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 306 ~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
-.. .++.+.|..+|+...+.. +.++..+...+......|+.+.|..+|+++
T Consensus 329 E~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 329 EYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 224666666666655532 223334444455555566666666666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=100.08 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=112.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
.|++++|++.|+++. ...+.+...+..+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAV----RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 478899999999988 334567888999999999999999999999999988765 788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC---CChHHHHHHHH
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNS---GTMDAAFKIFR 180 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~---~~~~~a~~~~~ 180 (485)
.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. |+ ...+..+...+.. . |++++|.+.++
T Consensus 77 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~-~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 77 AVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRR-LCDWRALDVLSAQVR 152 (568)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-hhccccHHHHHHHHH
Confidence 99999998875 4567889999999999999999999999998865 44 4445555544443 5 88999999999
Q ss_pred hhhhCCC
Q 011463 181 EMPNRGC 187 (485)
Q Consensus 181 ~~~~~~~ 187 (485)
+..+.+.
T Consensus 153 ~al~~~p 159 (568)
T 2vsy_A 153 AAVAQGV 159 (568)
T ss_dssp HHHHHTC
T ss_pred HHHhcCC
Confidence 9887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-08 Score=82.09 Aligned_cols=127 Identities=10% Similarity=-0.033 Sum_probs=109.5
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+...|++++|+..|++++ +|++.++..++..+...|++++|.+.++++....+. +...+..+..+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~ 80 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 3456778889999999999999886 568889999999999999999999999999988765 78889999999
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCC----------------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPT----------------PKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+...|++++|+..|++..+.. +.+ ...+..+..++...|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998753 222 2678888899999999999999999998854
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-08 Score=95.84 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=117.6
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRF 142 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 142 (485)
.|++++|.+.++++.+..+. +...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999999888765 78899999999999999999999999999875 45688899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc---CCHhHHHHHHHHHHH
Q 011463 143 YRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL---GKIYEAKELFKEMET 219 (485)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 219 (485)
+++..+.. +.+...+..+...+... |++++|.+.+++..+.... +...+..+..++... |++++|.+.+++..+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDA-GQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999865 23456777777777777 9999999999999887533 678899999999999 999999999999987
Q ss_pred CC
Q 011463 220 KA 221 (485)
Q Consensus 220 ~~ 221 (485)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=81.80 Aligned_cols=106 Identities=7% Similarity=-0.046 Sum_probs=90.8
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+...+..+...+.+.|++++|...|+++...+|. +...|..+..++...|++++|+..|++..+.+ |.++..|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 345667888889999999999999999999998776 78889999999999999999999999998875 4567888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVA 156 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 156 (485)
..++...|++++|...|++..+.. |+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999999998865 5553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-08 Score=75.89 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=79.3
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+...+..+.+.|++++|++.|+++++..+. +...|..+..++.+.|++++|+..|++..+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 456777777888888888888888888777655 67777778888888888888888888877764 4457777788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
+...|++++|.+.|++..+.. |+.....
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~--P~~~~a~ 118 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD--PSNEEAR 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--cCCHHHH
Confidence 888888888888888887754 5544333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=75.54 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=70.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
......+.+.|++++|++.|++++. ..|.++.+|..+..++.+.|++++|++.++++++.++. +...|..+..++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVK----RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 3456667777777777777777772 23556677777777777777777777777777776654 566777777777
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
...|++++|++.|++..+.. |.+...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 77777777777777777653 2344444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-08 Score=85.62 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=41.6
Q ss_pred CChHHHHHHHHhhhhCCC----C-CCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC----CCCC-hhhHHHHHHHHHcc
Q 011463 170 GTMDAAFKIFREMPNRGC----T-PDSYTYGTLINGLCRLGKIYEAKELFKEMETKA----CSPT-VVTYTSLINGLCQS 239 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~ll~~~~~~ 239 (485)
|++++|+..+++..+... . ....++..+..+|.+.|++++|+..|++..... ..+. ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 555555555554443210 0 013445555666666666666666666554321 1011 12344455555555
Q ss_pred CCHHHHHHHHHHHH
Q 011463 240 KSVEEAMRLFEEMR 253 (485)
Q Consensus 240 ~~~~~a~~~~~~~~ 253 (485)
|++++|...|++..
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.6e-07 Score=77.42 Aligned_cols=178 Identities=8% Similarity=0.018 Sum_probs=120.4
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
..+...+..++|+++++.++ .-.|.+..+|+....++...| .+++++++++.++..+++ +..+|+.-..++.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L----~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIV----RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHH----HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33444556677888888888 233556677777777777777 488888888888888776 777787777666665
Q ss_pred -C-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011463 99 -H-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLK--------LAFRFYRHMREIGIQPCVASLNVLIKALCKN 168 (485)
Q Consensus 99 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 168 (485)
+ ++++++++++++.+.+ +.+..+|+...-++.+.+.++ ++++.++++.+.. +-+...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 7788888888888765 456777766666655555555 7777777777765 23555666655555444
Q ss_pred CCC-------hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 169 SGT-------MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 169 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
+. ++++++.++++....+. |...|+.+-..+.+.|.
T Consensus 215 -~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 -PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp -TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred -cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 44 56677777776665433 66677666666655554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=78.55 Aligned_cols=112 Identities=8% Similarity=-0.024 Sum_probs=92.3
Q ss_pred HHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 011463 33 VIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 112 (485)
..|+.++ ...|.+...+..+...+...|++++|...|+.+....+. +...|..+..++...|++++|+..|++..
T Consensus 8 ~~~~~al----~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 8 GTIAMLN----EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp CSHHHHT----TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHH----cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455555 222445677888889999999999999999999888765 78888999999999999999999999998
Q ss_pred hcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 113 EFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..+ |.++..+..+..++...|++++|...|++..+..
T Consensus 83 ~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 83 VMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 865 4567888889999999999999999999988753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-08 Score=81.24 Aligned_cols=123 Identities=6% Similarity=0.141 Sum_probs=97.7
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH-HhccCC
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG-YGRVHR 100 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 100 (485)
+...|++++|+..|+.++. ..+.+...+..+...+...|++++|...|+++....+. +...+..+..+ +...|+
T Consensus 20 ~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR----ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQ 94 (177)
T ss_dssp CC-----CCCCHHHHHHHH----HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred hhhccCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCC
Confidence 4567889999999998883 33567888889999999999999999999998887665 67788888888 778888
Q ss_pred h--hhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 101 P--LDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 101 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+ ++|+..|++..+.+ +.+...+..+..++...|++++|...|+++.+..
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8 99999999988764 4467788888888999999999999999988854
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.2e-08 Score=76.45 Aligned_cols=124 Identities=9% Similarity=-0.007 Sum_probs=61.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.++. ..+.+..++..++..+...|++++|.+.++++....+. +...+..+..++.
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 344455555555555555555552 12334555555555555555555555555555555433 4455555555555
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHH--HHHHHHHcCCHHHHHHHHHHH
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYIT--VLAILVEENQLKLAFRFYRHM 146 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~ 146 (485)
..|++++|...|++..+.. +.+...+.. ....+...|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555442 223333322 222244445555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=73.88 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=71.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.+...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 344566777777777777777777777777766544 56677777777777777777777777776653 3456667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++...|++++|.+.+++..+..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC
Confidence 777777777777777777776643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-06 Score=72.73 Aligned_cols=167 Identities=8% Similarity=0.009 Sum_probs=109.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhHCCC-CCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH
Q 011463 303 LNGLCKEGKLQEAVEILDRMKLQGL-KPDA----GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN 377 (485)
Q Consensus 303 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (485)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..+++..+.....+ .+.....+++
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~~~~~~~~~~ 159 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQNLYIEN 159 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--CTTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 4556667777777777777665321 1111 1233455566666777777777777776322211 1112233455
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHh----C-CC-ccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhH
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRN----R-SI-SVDSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTW 445 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~----~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 445 (485)
.+...+... ++++|...|+++.+ . +. .....++..+..+|.+.|++++|+..+++..+. +..+. ...+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666666666 77777777777763 1 11 112347888999999999999999999988753 22222 4577
Q ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHc
Q 011463 446 SAVMTALWDRR-KMRQAAELLLLELMN 471 (485)
Q Consensus 446 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 471 (485)
..++.++.+.| ++++|.+.++++++.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88889999999 569999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-06 Score=74.41 Aligned_cols=176 Identities=8% Similarity=-0.037 Sum_probs=117.3
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHc-C-C
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEE-N-Q 135 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 135 (485)
...+.+..++|+++++.++..++. +..+|+.-..++...| .+++++..++.+...+ +-+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334445556899999999998877 7788888888887788 5899999999998875 45677888777777766 6 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH--------HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC-
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD--------AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK- 206 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 206 (485)
+++++++++++.+.. +-+...|+.-.-.+... |.++ ++++.++++.+..+. |...|+....++.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 888888888888754 23445555433333333 4444 677777777776544 66777776666666654
Q ss_pred ------HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccC
Q 011463 207 ------IYEAKELFKEMETKACSPTVVTYTSLINGLCQSK 240 (485)
Q Consensus 207 ------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 240 (485)
++++++.+++..... +-|...|+.+-..+.+.|
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 456666666665542 225555555444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.1e-07 Score=77.85 Aligned_cols=208 Identities=9% Similarity=0.103 Sum_probs=138.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHH---hHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 142 FYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY---TYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
.+.++......|+..+...+...+... ++. ++..-. ..+.. .+...+..+...|++++|.+.+++..
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~~---~~~~~~----~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l 102 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIP---IIH---FYEVLI----YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL 102 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCC---THH---HHHTTT----SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcC---HHH---HhCCCC----CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344444333457777766666654322 221 222111 11222 23334667888899999999999887
Q ss_pred HCCC-CCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHcCCChHHHHHHHHHHH
Q 011463 219 TKAC-SPTV----VTYTSLINGLCQSKSVEEAMRLFEEMRSKGVE-PN----VFTYSSLMDGLCKGGCSSQAMELLQMMI 288 (485)
Q Consensus 219 ~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 288 (485)
+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+..+|...|++++|...+++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 103 KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6422 1221 12334666677778999999999998874222 22 2368888899999999999999999987
Q ss_pred hC-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC----CCCCC-HHhHHHHHHHHHhcCC-HHHHHHHHHH
Q 011463 289 SK-----RHRP-NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ----GLKPD-AGLYGKIISCFCDIGK-YQEAANFLDE 356 (485)
Q Consensus 289 ~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~ 356 (485)
+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..+|..+..+|...|+ +++|...+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 42 1111 2346788888999999999999999887643 21222 5688889999999994 6999999998
Q ss_pred HHH
Q 011463 357 MVL 359 (485)
Q Consensus 357 ~~~ 359 (485)
...
T Consensus 263 Al~ 265 (293)
T 3u3w_A 263 ASF 265 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=87.31 Aligned_cols=93 Identities=6% Similarity=-0.076 Sum_probs=56.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|+..|+.++. ..+.+...|..+..++.+.|++++|...++++.+..+. +...+..+..++.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 445556666666666666666662 22345566666666666666666666666666665543 5556666666666
Q ss_pred ccCChhhHHHHHHHHHhc
Q 011463 97 RVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~ 114 (485)
..|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-07 Score=81.08 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=79.9
Q ss_pred HHHhcCCcchHHHHHHHHhhcCCCC-----CHHHHHHHHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHH
Q 011463 59 KLVSANQFRPAEDLLDRVNKEKCDI-----TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLA 128 (485)
Q Consensus 59 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 128 (485)
.|...|++++|.+.|.++....... -..++..+...|.+.|++++|+..|++..+. |-+. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566666666555544432110 1234555556666666666666666655432 1000 1234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCCC-HHhHHHHH
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQ---P--CVASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTPD-SYTYGTLI 198 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 198 (485)
+|.. |++++|++.|++..+.... + ...++..+...+... |++++|...|++..+. +..+. ...+..+.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 5555 6666666666665542100 0 023444555555555 6666666666665543 11111 12455555
Q ss_pred HHHHHcCCHhHHHHHHHHHH
Q 011463 199 NGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 199 ~~~~~~~~~~~a~~~~~~~~ 218 (485)
.++...|++++|...|++..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-07 Score=75.37 Aligned_cols=187 Identities=8% Similarity=-0.067 Sum_probs=113.9
Q ss_pred hcCCcchHHHHHHHHhhcCCCCCHHHHHHH-------HHHHhccCChhhHHHHHHHHHhcCCCCC---------------
Q 011463 62 SANQFRPAEDLLDRVNKEKCDITEDIFLSI-------CRGYGRVHRPLDAMRVFDKMKEFGCEPT--------------- 119 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 119 (485)
..++...|.+.|.++....|. ....|..+ ..++...++..+++..+.+-... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 467777777777777777665 56667666 45555555555555555554441 111
Q ss_pred -------HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCC--
Q 011463 120 -------PKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPD-- 190 (485)
Q Consensus 120 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 190 (485)
......+...+...|++++|.++|+.+...+ |+......+...+.+. +++++|+..|+...+.. .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccH
Confidence 2233445666777777777777777766544 4433333333344455 77888887777555431 111
Q ss_pred HHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 191 SYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT--VVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777777888888887777764332132 234555666777777777777777777765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=70.87 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=56.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
+...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3445555555555666666666666665555433 45555555556666666666666666655542 234555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 011463 129 ILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 666666666666666665554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-07 Score=69.23 Aligned_cols=99 Identities=8% Similarity=0.178 Sum_probs=62.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..++..+...|++++|.+.++++....+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 445666666666666666666666666665443 45566666666666666666666666666543 3455566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcC
Q 011463 130 LVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+...|++++|...++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 666677777777766666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=6.3e-08 Score=73.74 Aligned_cols=102 Identities=9% Similarity=0.020 Sum_probs=85.2
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
|.+...+..+...+...|++++|...|+.+...++. +...|..+..++...|++++|+..|++....+ +.++..+..+
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 92 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 334566777888888999999999999999888765 78888888899999999999999999988875 4567788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..++...|++++|...|++..+..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999887753
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.9e-08 Score=74.28 Aligned_cols=101 Identities=14% Similarity=0.022 Sum_probs=89.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+.+.|++++|+..|++++. ..|.++..|..+..++...|++++|++.|+++....|. ++..+..+..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 345677889999999999999999993 34678999999999999999999999999999999876 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHh
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPK 121 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 121 (485)
+|.+.|++++|+..|++..+.. |+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 9999999999999999999864 5543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=79.51 Aligned_cols=195 Identities=13% Similarity=0.037 Sum_probs=126.8
Q ss_pred CHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHH
Q 011463 260 NVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS 339 (485)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (485)
+...+..+...+.+.|++++|...|+.++..... +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556677777888888888888888888876433 67778888888888899999999988888764 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcc-cccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHH
Q 011463 340 CFCDIGKYQEAANFLDEMVLGGITPNRL-TWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFC 418 (485)
Q Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (485)
++...|++++|...|++..+.. |+.. .+. ..+..... ...+.. +..........+......+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~-------~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFG-------DDIPSALR--IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCC-------SHHHHHHH--HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHH-------HHHHHHHH--HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 8999999999999998887642 3321 111 11111111 111111 1222222333344444444332
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhc-CcHHHHHHHHHHHHHcC
Q 011463 419 KKGDIHKSARIVDELVLDGCLPDEGTWSA-VMTALWDR-RKMRQAAELLLLELMNK 472 (485)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~-g~~~~A~~~~~~~~~~~ 472 (485)
..|+.++|++.+++..+. .|+...... +...+.+. +.+++|.++|.++.+..
T Consensus 147 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 147 IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 368999999999888865 565544333 33334444 67888999998887643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.4e-07 Score=76.64 Aligned_cols=171 Identities=8% Similarity=-0.013 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCH------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccc
Q 011463 298 TYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDA------GLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSL 371 (485)
Q Consensus 298 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (485)
.+...+..+...|++++|...+....+.... .. ..+..+...+...|++++|...+++..+...... ....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~ 153 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQ 153 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHH
Confidence 3445566777888888888888777665321 21 2234455667778888999988888876432211 1111
Q ss_pred hhhhHHHHHHHHhcC-ChhHHHHHHHHHHh---CCC-cc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 011463 372 HIRIHNTVVQGLCKT-DPNRAFQVYLSMRN---RSI-SV--DSLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP 440 (485)
Q Consensus 372 ~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p 440 (485)
...+++.+...+... ++++|...|+++.+ ... .+ ...++..+..+|...|++++|+..+++..+. +...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 234555777777777 88899998888762 211 11 2258889999999999999999999998754 1111
Q ss_pred -ChhhHHHHHHHHHhcCcHHHH-HHHHHHHHHc
Q 011463 441 -DEGTWSAVMTALWDRRKMRQA-AELLLLELMN 471 (485)
Q Consensus 441 -~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 471 (485)
-..++..+..++.+.|++++| ..++++++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 145677888999999999999 7878887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=6.9e-07 Score=73.35 Aligned_cols=126 Identities=11% Similarity=-0.049 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcC
Q 011463 195 GTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKG 274 (485)
Q Consensus 195 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (485)
..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 344555555666666666665542 3355555666666666666666666666655543 23455555666666666
Q ss_pred CChHHHHHHHHHHHhCCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC
Q 011463 275 GCSSQAMELLQMMISKRHRP---------------NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ 325 (485)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 325 (485)
|++++|...++.+.+..... ....+..+..++...|++++|...+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666665542210 1255666777777777888887777777765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.8e-07 Score=71.39 Aligned_cols=128 Identities=11% Similarity=0.026 Sum_probs=79.4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+..++..+...|++++|...|+++....+. +...+..+...+...|++++|+..+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44666667777777777777777777776544 56667777777777777777777777776653 34566666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCChHHHHHHHHhh
Q 011463 131 VEENQLKLAFRFYRHMREIGIQPCVASL--NVLIKALCKNSGTMDAAFKIFREM 182 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~ 182 (485)
...|++++|...+++..+... .+...+ ......+... |++++|...+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQ-KAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHH-HHHHHHHHcccch
Confidence 777777777777777666431 122222 1122223343 5666666555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-07 Score=68.31 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=83.4
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
.....+..++..+...|++++|+..|+++. ...+.+...+..+...+...|++++|.+.++++....+. +...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI----KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHH----TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHH
Confidence 344445566777777888888888888877 233456777777788888888888888888887777654 667777
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
.+..++...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77778888888888888888777653 234455555555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-06 Score=73.35 Aligned_cols=168 Identities=8% Similarity=0.094 Sum_probs=120.4
Q ss_pred HhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--H
Q 011463 192 YTYGTLINGLCRLGKIYEAKELFKEMETKACSPT-----VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV---EPN--V 261 (485)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 261 (485)
..+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567778888999999998888776532211 12234455667788899999999988875421 111 4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCC----CCC-C
Q 011463 262 FTYSSLMDGLCKGGCSSQAMELLQMMIS---KRHR-P--NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQG----LKP-D 330 (485)
Q Consensus 262 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 330 (485)
.+++.+...|...|++++|...++++.+ .... + ...++..+..+|...|++++|...+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888899999999999999998873 2111 1 12578888889999999999999998876531 111 1
Q ss_pred HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011463 331 AGLYGKIISCFCDIGKYQEA-ANFLDEMVL 359 (485)
Q Consensus 331 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 359 (485)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777877653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-07 Score=82.75 Aligned_cols=127 Identities=9% Similarity=-0.010 Sum_probs=96.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC---------------HHhHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD---------------NSTFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+..+...+.+.|++++|+..|++++.. .+.+ ..+|..+..++.+.|++++|+..+++++..
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677788889999999999888832 2223 467888888888888888888888888887
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 011463 80 KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA-FRFYRHMR 147 (485)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 147 (485)
.+. +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|+.+++ ...|+.|.
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 77788888888888888888888888887764 44667777788888888887777 44555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-07 Score=68.39 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+..+...+.+.|++++|.+.|++.+...+. +...+..+..++.+.|++++|+..|++..+.+ +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34555555555666666666666665555443 45555556666666666666666666655543 33455555555566
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 011463 131 VEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 131 ~~~~~~~~a~~~~~~~~~ 148 (485)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=76.43 Aligned_cols=122 Identities=10% Similarity=-0.033 Sum_probs=71.7
Q ss_pred HccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC-----CCCCHHHHHHHHHHHhc
Q 011463 23 RAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-----CDITEDIFLSICRGYGR 97 (485)
Q Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~ 97 (485)
...|++++|.++++.+. ........++..+...+...|++++|.+.+++....- ......++..+...+..
T Consensus 3 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL----AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHH----TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45678888888555554 1212345667777777788888888888877766521 01123456666667777
Q ss_pred cCChhhHHHHHHHHHhc----CCC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEF----GCE--PTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|++++|...+++..+. +-. .....+..+...+...|++++|...+++..+
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777766543 101 1123455566666666777777666666543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4e-07 Score=67.88 Aligned_cols=115 Identities=7% Similarity=-0.011 Sum_probs=65.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+..++..+...|++++|+..|+++.. ..+.+...+..++..+...|++++|.+.++.+....+. +...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 34455556666666666666666652 12344555666666666666666666666666655433 45556666666
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665543 2344555555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.8e-07 Score=65.05 Aligned_cols=93 Identities=9% Similarity=0.120 Sum_probs=45.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYG 96 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (485)
.++..+...|++++|++.|+++.. ..+.+..++..++..+...|++++|...++++....+. +...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 88 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 344445555555555555555541 11233444455555555555555555555555444332 3444445555555
Q ss_pred ccCChhhHHHHHHHHHhc
Q 011463 97 RVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~ 114 (485)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.2e-08 Score=80.91 Aligned_cols=189 Identities=12% Similarity=-0.044 Sum_probs=142.5
Q ss_pred ccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHH-------HHHHHhcCCcchHHHHHHHHhhcCCC-----CC-------
Q 011463 24 AEKDVNKALVIFDSATAEYANGFRHDNSTFSLM-------ISKLVSANQFRPAEDLLDRVNKEKCD-----IT------- 84 (485)
Q Consensus 24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~------- 84 (485)
..++++.|++.|.++. ...|.....|..+ ..++.+.++..++...+.......+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~----~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT----NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHH----HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 5899999999999999 3345668889888 68888888888888888877763211 01
Q ss_pred --------HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 011463 85 --------EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-- 154 (485)
Q Consensus 85 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 154 (485)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH
Confidence 2344556778889999999999999998754 444466667778999999999999998654421 111
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCC--CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 155 VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTP--DSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
...+..+-..+... |++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANL-ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22444555555666 99999999999998543314 3446677888899999999999999999886
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=88.11 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--------------HHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--------------EDIFLS 90 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ 90 (485)
.+++++|+..|+..... .+.+...+..+...+.+.|++++|...|++++...+... ..++..
T Consensus 126 L~~~~~A~~~~~~a~~~----~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHH----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 34455555555544411 122455666667777777777777777777766654421 344555
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
+..+|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555554443 23444455555555555555555555555544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-07 Score=72.34 Aligned_cols=121 Identities=7% Similarity=0.087 Sum_probs=78.4
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH-HHHcCCH--H
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI-LVEENQL--K 137 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 137 (485)
...|++++|...++......+. +...+..+...|...|++++|+..|++..+.+ +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4567777777777777776654 66777777777777788888888777776653 3456666666666 6667776 7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 138 LAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 138 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+|...++++.+.. +.+...+..+...+... |++++|...++.+.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQ-ANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhh
Confidence 7777777777654 12344455555555555 7777777777777665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=70.68 Aligned_cols=96 Identities=9% Similarity=-0.120 Sum_probs=85.3
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
...+...+...|++++|+..|+.++. ..|.++..|..+..++...|++++|...|+++...++. +...+..+..+
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCM----LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 34567788999999999999999983 34668889999999999999999999999999999876 77889999999
Q ss_pred HhccCChhhHHHHHHHHHhcC
Q 011463 95 YGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+...|++++|+..|++..+..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-07 Score=66.84 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=85.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
+......+...|++++|+..|++++. ..|.++..|..+..++.+.|++++|+..++++++.++. +...+..+..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 34567788999999999999999993 34667899999999999999999999999999998776 78899999999
Q ss_pred HhccCChhhHHHHHHHHHhc
Q 011463 95 YGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~ 114 (485)
+...|++++|+..|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-07 Score=66.19 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=57.9
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPT----PKSYI 124 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 124 (485)
.++..++..+.+.|++++|++.|+++++..|. +...|..+..+|.+.|++++|++.+++..+.+. .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666666544 556666666666666666666666666654320 001 12455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.+..++...|++++|++.|++.+..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=68.27 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC--C----HHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI--T----EDI 87 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~ 87 (485)
.+..+...+.+.|++++|++.|++++. -.|.++.+|..+..+|...|++++|++.++++++..+.. + ..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 355688899999999999999999993 346678899999999999999999999999998764321 1 246
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYIT 125 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 125 (485)
+..+..++...|++++|++.|++.++. .|++.....
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777888999999999999999998875 467655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=7.3e-07 Score=65.00 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+..++..+...|++++|.+.++.+....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444444444555555555555555444332 34444444455555555555555555544432 223444444555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 011463 132 EENQLKLAFRFYRHMRE 148 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~ 148 (485)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=63.46 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=64.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..++..+...|++++|+..|+.+.. ..+.++..+..++..+...|++++|...++++....+. +...+..+..++
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3456666777777777777777762 22445666777777777777777777777777766544 566667777777
Q ss_pred hccCChhhHHHHHHHHHhcC
Q 011463 96 GRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~ 115 (485)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-07 Score=73.98 Aligned_cols=117 Identities=11% Similarity=0.007 Sum_probs=61.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH----------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN----------------STFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
.+...+...|++++|+..|++++.. .+.++ .++..+..++...|++++|+..++.+....
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566666666666666666621 11122 455555555556666666666666555554
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 81 CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+. +...+..+..++...|++++|+..|++..+.. +.+...+..+..++...++..++
T Consensus 119 p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 33 45555555555555666666666665555542 22344444444444444444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-07 Score=73.84 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=88.3
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHHcCC
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----GC-EPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 135 (485)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456788888885554433 22235567777777888888888888888777652 11 1224456667777777777
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCC-CCHHhHHHHHHHHHHc
Q 011463 136 LKLAFRFYRHMREI----GIQP--CVASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCT-PDSYTYGTLINGLCRL 204 (485)
Q Consensus 136 ~~~a~~~~~~~~~~----~~~~--~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 204 (485)
+++|.+.+++..+. +-.+ ....+..+...+... |++++|...+++..+. +.. ....++..+..++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 77777777776543 1011 122344444455555 7777777666665532 100 0122345555666666
Q ss_pred CCHhHHHHHHHHHH
Q 011463 205 GKIYEAKELFKEME 218 (485)
Q Consensus 205 ~~~~~a~~~~~~~~ 218 (485)
|++++|.+.+++..
T Consensus 161 g~~~~A~~~~~~al 174 (203)
T 3gw4_A 161 KNLLEAQQHWLRAR 174 (203)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 66666666665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.5e-05 Score=64.64 Aligned_cols=139 Identities=6% Similarity=-0.002 Sum_probs=82.8
Q ss_pred HhcCCcc-hHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 61 VSANQFR-PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR----------PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 61 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+.|.++ +|+++++.++..+|. +..+|+.--..+...+. +++++.+++.+...+ |-+..+|+.-.-+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4556655 678888888777665 56666654444433332 456677777776654 4466666666666
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC-hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc
Q 011463 130 LVEEN--QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT-MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL 204 (485)
Q Consensus 130 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 204 (485)
+...+ .+++++.+++++.+.. +-+...|+.-.-.+... |. ++++++.++.+.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 66666 3667777777777654 23444555444444444 55 46677777777666443 666666655555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-07 Score=68.64 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 011463 72 LLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGI 151 (485)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 151 (485)
.++++....+. +...+..+...+...|++++|+..|++....+ +.+...|..+..++...|++++|...|++.....
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 34555544332 45566667777777777777777777777654 4466677777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhC
Q 011463 152 QPCVASLNVLIKALCKNSGTMDAAFKIFREMPNR 185 (485)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 185 (485)
+.+...+..+...+... |++++|...|+...+.
T Consensus 86 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQX-GELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 22344455555555555 7777777777777664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=68.31 Aligned_cols=101 Identities=10% Similarity=-0.006 Sum_probs=78.8
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
.+...+..+...+...|++++|++.|++++...+. +...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34567777788888888888888888888877655 67778888888888888888888888887764 44577788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 011463 128 AILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.++...|++++|...|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888888888888888877653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=65.69 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=78.0
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
+.++..+..+...+...|++++|...|+.+....+. +...+..+..++...|++++|+..+++..+.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 456777778888888888888888888888777654 67777888888888888888888888887764 4456777778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 011463 127 LAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
..++...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00014 Score=63.03 Aligned_cols=174 Identities=7% Similarity=-0.026 Sum_probs=127.6
Q ss_pred HHccCCHH-HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC----------cchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 22 IRAEKDVN-KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ----------FRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 22 ~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
..+.|++. +|+.+++.++ ...|.+..+|+.-..++...+. +++++.+++.++..+|+ +..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L----~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQIL----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 34556555 7999999999 4445667778777776665554 68899999999999887 8899998
Q ss_pred HHHHHhccCC--hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011463 91 ICRGYGRVHR--PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ-LKLAFRFYRHMREIGIQPCVASLNVLIKALCK 167 (485)
Q Consensus 91 l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 167 (485)
-..++.+.|+ +++++.+++++.+.+ +.|..+|+.-.-++...|. ++++++.+.++++.. +-+...|+.....+..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 8888888884 899999999999886 5688899888888888888 699999999999876 3456666655444433
Q ss_pred cC-------------CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH
Q 011463 168 NS-------------GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR 203 (485)
Q Consensus 168 ~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (485)
.. +.++++++.+.......+. |...|+-+-..+.+
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 20 2356677777776665433 66666654444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-07 Score=66.31 Aligned_cols=94 Identities=9% Similarity=-0.016 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..+...+.+.|++++|...|+++++..+. +...|..+..++...|++++|+..|++..+.+ |.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344445555555555665555555555443 45555555555555566666665555555543 2344555555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMRE 148 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~ 148 (485)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555666555555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.4e-08 Score=79.03 Aligned_cols=123 Identities=9% Similarity=-0.071 Sum_probs=72.8
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---------------HH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---------------ED 86 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~ 86 (485)
....|+++++.+.|+.... ........+..+...+...|++++|.+.|+++....+... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDE----EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp --------CCCSGGGCCHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHH----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 4456666666666654431 1122345567777777888888888888888777544311 15
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56666666666777777777777666653 345566666666666677777777776666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.1e-07 Score=64.74 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CCHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-ITEDIFLSICRG 94 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 94 (485)
..++..+...|++++|+..|+++.. ..+.+...+..+...+...|++++|.+.++++.+..+. .+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQ----LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3344444445555555555554441 11233444444444444455555555555444443221 023444444444
Q ss_pred Hhcc-CChhhHHHHHHHHHh
Q 011463 95 YGRV-HRPLDAMRVFDKMKE 113 (485)
Q Consensus 95 ~~~~-~~~~~a~~~~~~~~~ 113 (485)
+... |++++|.+.+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 444444444444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-07 Score=69.84 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=87.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+...|++++|+..|++++. ..+.+...|..+..++...|++++|+..|++++...+. +...|..+..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS----IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 355678889999999999999999993 33567889999999999999999999999999999866 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhcC
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
++...|++++|+..|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=67.37 Aligned_cols=96 Identities=6% Similarity=-0.052 Sum_probs=85.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
....+...+.+.|++++|+..|++++. ..|.+...|..+..++...|++++|+..|+++.+..+. +...+..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 455677889999999999999999993 34668899999999999999999999999999999876 7889999999
Q ss_pred HHhccCChhhHHHHHHHHHhc
Q 011463 94 GYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~ 114 (485)
++...|++++|+..|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=66.71 Aligned_cols=112 Identities=9% Similarity=-0.062 Sum_probs=76.7
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
+.+...+..+...+...|++++|.+.|++.....+. + ...+..+...+...|++++|+..+++..+.. +.+...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 445667777777777777777777777777766432 2 5667777777777788888887777776653 3456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLI 162 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 162 (485)
..+..++...|++++|...|++..+.. |+.......+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 777777777888888888887777644 4433333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.6e-06 Score=63.34 Aligned_cols=94 Identities=10% Similarity=0.015 Sum_probs=57.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC---HHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---STFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT---EDIFL 89 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~ 89 (485)
..++..+...|++++|+..|+.++.. .|.++ ..+..+..++...|++++|...|+.+....+. + ...+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 80 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHH
Confidence 34455666667777777777766621 12222 45566666666677777777777666665543 2 45556
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+..++...|++++|...|+++.+.
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-06 Score=63.75 Aligned_cols=95 Identities=8% Similarity=-0.002 Sum_probs=62.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
.+..+...+...|++++|++.|+.+. . . .|+ ...+..+...+...|++++|.+.++.+....+. +...+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~---~-~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQAL---G-L-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHH---T-S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---H-H-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34445666667777777777777776 1 1 233 556666677777777777777777777666543 566666
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6777777777777777777777664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.3e-06 Score=62.75 Aligned_cols=102 Identities=8% Similarity=-0.056 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC---HhhHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITE---DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT---PKSYITV 126 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 126 (485)
+..++..+...|++++|.+.|+.+....+. +. ..+..+..++.+.|++++|+..|++..+.. +.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 455677888899999999999998887654 33 577788888999999999999999988764 333 5667888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASL 158 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 158 (485)
..++...|++++|...|+++.+.. |+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 112 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY--PGSDAA 112 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCChHH
Confidence 888889999999999999888754 554433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=9.7e-07 Score=66.54 Aligned_cols=98 Identities=6% Similarity=-0.089 Sum_probs=87.1
Q ss_pred CCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 12 KITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
...+..+...+...|++++|+..|+.++. ..+.++..+..+..++...|++++|...++.+....+. +...+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 34456778899999999999999999983 33567889999999999999999999999999998766 78899999
Q ss_pred HHHHhccCChhhHHHHHHHHHhc
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
..++...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999998775
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-06 Score=63.87 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCC--CCC----HhhHH
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC--EPT----PKSYI 124 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 124 (485)
..+..++..+...|++++|...++++....+. +...+..+...+...|++++|...+++...... +++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555555556666666666666665555433 455555555666666666666666665554320 011 44555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.+..++...|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555666666666666666666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8e-07 Score=66.21 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=90.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC--CC----HHHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD--IT----EDIF 88 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~ 88 (485)
+..++..+...|++++|+..|+.+.. ..+.++..+..++..+...|++++|...++.+....+. ++ ..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45577889999999999999999983 23567888999999999999999999999999887542 12 6788
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
..+...+...|++++|.+.|++..+.. |+......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 889999999999999999999998864 5666655554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-07 Score=67.07 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHhhhhhcCC--CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChh
Q 011463 25 EKDVNKALVIFDSATAEYANG--FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPL 102 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (485)
.|++++|+..|++++ ..+ .|.+..++..+..++...|++++|++.|+++.+..+. +...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 566777777777776 221 1334556666677777777777777777777766554 5666666667777777777
Q ss_pred hHHHHHHHHHhc
Q 011463 103 DAMRVFDKMKEF 114 (485)
Q Consensus 103 ~a~~~~~~~~~~ 114 (485)
+|+..|++..+.
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-05 Score=72.71 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=83.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH---------------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDN---------------STFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
-+..+...|++++|++.|..++...+. ..+. .++..++..|...|++++|.+.+..+......
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSS--QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCC--SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888742111 1110 13556667777777777777777666543211
Q ss_pred CCH-----HHHHHHHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 011463 83 ITE-----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREIG-- 150 (485)
Q Consensus 83 ~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 150 (485)
.+. .+.+.+...+...|+++.|..+++..... +..+ -..++..+...+...|++++|..+++++...-
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12222333334456666666666655432 1111 13345556666666666666666666554321
Q ss_pred C--CC-CHHHHHHHHHHHHhcCCChHHHHHHHHhhh
Q 011463 151 I--QP-CVASLNVLIKALCKNSGTMDAAFKIFREMP 183 (485)
Q Consensus 151 ~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 183 (485)
. .+ ....+......+... |++++|..+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAAR 202 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence 0 01 112333344444444 55555555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=59.89 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=58.8
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCC--CHHhHHHHH
Q 011463 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKP--DAGLYGKII 338 (485)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 338 (485)
...+..+...+...|++++|...++++.+... .+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34445555556666666666666666655432 245555566666666666666666666666553 23 455666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHC
Q 011463 339 SCFCDI-GKYQEAANFLDEMVLG 360 (485)
Q Consensus 339 ~~~~~~-~~~~~a~~~~~~~~~~ 360 (485)
.++... |++++|.+.+++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666676666666653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.4e-07 Score=83.73 Aligned_cols=118 Identities=8% Similarity=-0.010 Sum_probs=89.2
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
.+.+.|++++|++.|+++++ ..+.+..+|..+..++.+.|++++|.+.++++.+..+. +...+..+..+|...|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 36778899999999998883 23556888888889999999999999999998888765 67888888888888999
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHH
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAI--LVEENQLKLAFRFYR 144 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 144 (485)
+++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998888764 3344555555555 777788888888877
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-05 Score=70.38 Aligned_cols=167 Identities=9% Similarity=-0.044 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHHHhcCCChHHHHHHHHhhhhC----CCCC-CHHh
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMREIG-IQPC---VASLNVLIKALCKNSGTMDAAFKIFREMPNR----GCTP-DSYT 193 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 193 (485)
+..+...|...|++++|.+.+..+...- ..++ .......+..+....|+++.+..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 0011 1223334444444457888888887776542 2222 2456
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHC--CCC---CChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--Hh
Q 011463 194 YGTLINGLCRLGKIYEAKELFKEMETK--ACS---PTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK----GVEPN--VF 262 (485)
Q Consensus 194 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 262 (485)
+..+...+...|++++|..++++.... +.. .....+..++..|...|++++|...+++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888899999999999988887543 111 12356778888899999999999998877542 11111 24
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011463 263 TYSSLMDGLCKGGCSSQAMELLQMMIS 289 (485)
Q Consensus 263 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 289 (485)
.+..+...+...|++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666777888999999888877754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.9e-06 Score=64.29 Aligned_cols=99 Identities=10% Similarity=0.038 Sum_probs=59.0
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhc--------CC---------CCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKE--------KC---------DITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
..+...+..+.+.|++++|+..|..++.. .+ +.+...+..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455555555666666666666555543 00 01234566666666667777777777766666
Q ss_pred cCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 114 FGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 114 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.+ +.+...|..+..++...|++++|...|++..+..
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 53 3456666666666777777777777777666643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-06 Score=65.70 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=84.2
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcC----C----------CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYAN----G----------FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK 80 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 80 (485)
+......+.+.|++++|+..|+.++..... . .+.+...|..+..++.+.|++++|+..++.++..+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 345678899999999999999999842000 0 12334688999999999999999999999999987
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 81 CDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+. +...|..+..+|...|++++|...|++..+..
T Consensus 94 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Cc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 66 78899999999999999999999999999864
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=77.88 Aligned_cols=120 Identities=8% Similarity=-0.004 Sum_probs=79.9
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC---------------HHhHHHHHHHHHhcCCcchHHHHHHHHhhc
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD---------------NSTFSLMISKLVSANQFRPAEDLLDRVNKE 79 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 79 (485)
+......+.+.|++++|+..|++++.. .+.+ ..+|..+..++.+.|++++|+..+++++..
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 445667778888888888888888732 1222 456777777777777777777777777776
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHH
Q 011463 80 KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAF 140 (485)
Q Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 140 (485)
.+. +...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 654 66677777777777777777777777776653 334556666666666666665554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.1e-06 Score=75.69 Aligned_cols=123 Identities=8% Similarity=-0.034 Sum_probs=78.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcC------------CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYAN------------GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
+..+...+.+.|++++|+..|++++..... ..+.+..+|..+..++.+.|++++|++.++++++..+.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 445677788888999999998888831000 11223456666677777777777777777777766544
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 83 ITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 306 -~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 306 -NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777777766653 23455555555555555554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-06 Score=63.18 Aligned_cols=88 Identities=6% Similarity=-0.049 Sum_probs=69.5
Q ss_pred hcCCcchHHHHHHHHhhcCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHH
Q 011463 62 SANQFRPAEDLLDRVNKEKC--DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLA 139 (485)
Q Consensus 62 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 139 (485)
..|++++|+..|+++++.++ +.+...+..+..+|...|++++|+..|++..+.. |.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46889999999999988741 1255778888899999999999999999998875 45678888899999999999999
Q ss_pred HHHHHHHHHcC
Q 011463 140 FRFYRHMREIG 150 (485)
Q Consensus 140 ~~~~~~~~~~~ 150 (485)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999988754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.3e-06 Score=63.24 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC----CH-----HhHHHHHHHHHhcCCcchHHHHHHHHhhc-------
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRH----DN-----STFSLMISKLVSANQFRPAEDLLDRVNKE------- 79 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 79 (485)
......+...|++++|+..|++++.-.. ..+. +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p-~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCC-CCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3455667778888888888888774311 1100 11 15555566666666666666666655554
Q ss_pred CCCCCHHHH----HHHHHHHhccCChhhHHHHHHHHHh
Q 011463 80 KCDITEDIF----LSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 80 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
++. +...| .....++...|++++|+..|++..+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 332 33444 4455555555555555555555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-06 Score=78.82 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+..+...+.+.|++++|.+.++++.+..+. +...+..+..+|.+.|++++|++.+++..+.. +.+..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344455677899999999999999998765 78899999999999999999999999999875 4568889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH--HHhcCCChHHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPC-VASLNVLIKA--LCKNSGTMDAAFKIFR 180 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~--~~~~~~~~~~a~~~~~ 180 (485)
.|++++|.+.|++..+.. |+ ...+..+... +.+. |++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~-g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQ-KAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHH-HHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHHHHhcccc
Confidence 999999999999998864 33 2233333333 5666 89999999988
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=62.71 Aligned_cols=65 Identities=12% Similarity=-0.102 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 407 SLTYSSLITCFCKKGDIHKSARIVDELVLD----GCLP-DEGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 407 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
...+..+..++...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.++++++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456777888899999999999999988754 1111 1345667788889999999999999998875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.1e-06 Score=76.01 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=53.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..+...+.+.|++++|+..|++++.. .|+... +...|+++++...+ ....|..+..+|
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566677788888888888887721 222210 01111111111111 011444455555
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554432 23444555555555555555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-05 Score=60.32 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=76.4
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC------CH-----HHHHHHHHHHhccCChhhHHHHHHHHHhc-----
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDI------TE-----DIFLSICRGYGRVHRPLDAMRVFDKMKEF----- 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 114 (485)
..+......+.+.|++++|++.|+++++..+.. +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456677888899999999999999999886551 22 27888888888888888888888888775
Q ss_pred --CCCCCHhhH----HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 115 --GCEPTPKSY----ITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 115 --~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
+ |.+...| .....++...|++++|+..|++..+.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 2345677 77888888888888888888887763
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-06 Score=63.61 Aligned_cols=134 Identities=8% Similarity=-0.026 Sum_probs=72.4
Q ss_pred hHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC--HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC-CC----HHH
Q 011463 15 SAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHD--NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD-IT----EDI 87 (485)
Q Consensus 15 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~ 87 (485)
+..+...+...|++++|+..++++.........+. ..++..+...+...|++++|.+.+++....... .+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34556666677777777777776663211110010 135566666667777777777777665543211 01 234
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEF----GCE-PTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
+..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666666666665432 100 1123445555556666666666666665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.6e-06 Score=75.19 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=88.6
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhc-----CCC-C-CHHHHH
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKE-----KCD-I-TEDIFL 89 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 89 (485)
.+..+|++++|+.++++++........++ ..+++.++.+|..+|++++|..++++++.. |+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678899999988888876544444333 346888888888889998888888876543 222 1 234677
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhc-----CCC-C-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEF-----GCE-P-TPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.|...|...|++++|+.++++..+. |.. | ...+...+..++...+.+++|+.+|.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888877542 311 1 233445566667777788888888887765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-05 Score=72.04 Aligned_cols=88 Identities=7% Similarity=-0.041 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH
Q 011463 121 KSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING 200 (485)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (485)
..|..+..++.+.|++++|+..++++++.. +.+...+..+..++... |++++|...|+++.+.... +...+..+..+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLM-NEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455555556666666666666666655543 12344444445555554 6666666666666554322 44455555555
Q ss_pred HHHcCCHhHHH
Q 011463 201 LCRLGKIYEAK 211 (485)
Q Consensus 201 ~~~~~~~~~a~ 211 (485)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=70.98 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=58.7
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhc----------------CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKE----------------KCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
..+..+...+.+.|++++|++.|+++++. .+. +..+|..+..+|.+.|++++|+..+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV-ALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 34677788888889999999888888762 111 2344555555555556666666655555554
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
. +.+...+..+..++...|++++|...|++..+.
T Consensus 303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 234455555555555555555555555555553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00047 Score=65.26 Aligned_cols=175 Identities=6% Similarity=-0.008 Sum_probs=124.9
Q ss_pred HhcCCc-chHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------hhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 61 VSANQF-RPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR----------PLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 61 ~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
.+.|.+ ++|++.++.++..+++ +..+|+.-..++...|+ ++++++.++.+.+.+ +-+..+|..-.-+
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344544 5778999999988876 77788877777777766 888999999888875 4577788888888
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHc--
Q 011463 130 LVEEN--QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSG-TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRL-- 204 (485)
Q Consensus 130 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 204 (485)
+.+.+ +++++++.++++.+.. +-+...|+.-...+... | .++++++.++++.+..+. +...|+....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l-~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-CCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcc
Confidence 88888 6689999999988865 23566666666555565 6 788888888888887544 778888777776663
Q ss_pred ------------CCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 011463 205 ------------GKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 205 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 241 (485)
+.++++++.+++..... +-+...|...-..+.+.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34566666666666543 2255566665555555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=7e-05 Score=70.92 Aligned_cols=177 Identities=7% Similarity=-0.056 Sum_probs=141.7
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCC----------cchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQ----------FRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
....++|++.++.++ ...|.+..+|+....++...|+ ++++++.++.+.+.+++ +..+|..-..+
T Consensus 42 ~~~~eeal~~~~~~l----~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQIL----GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344567899999999 3446677889888888888887 89999999999999887 89999999999
Q ss_pred HhccC--ChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 011463 95 YGRVH--RPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN-QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN--- 168 (485)
Q Consensus 95 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--- 168 (485)
+.+.| +++++++.++++.+.+ +.+..+|+....++.+.| .++++++.++++++.. +-+...|+.....+...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence 99999 6699999999999986 568889999888888888 8999999999998865 34566676665555441
Q ss_pred ----------CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhH
Q 011463 169 ----------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYE 209 (485)
Q Consensus 169 ----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 209 (485)
.+.++++.+.++.+....+. +...|..+-..+.+.++.++
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 04468899999888877543 77888888777777776444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-05 Score=55.99 Aligned_cols=83 Identities=8% Similarity=-0.019 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 011463 389 NRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 389 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
+.+...|++..+..+. +...+..+..+|...|++++|+..|++.++.. +.+...|..+..++...|++++|...++++
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3577888888887665 77889999999999999999999999999863 445667888999999999999999999999
Q ss_pred HHcCC
Q 011463 469 LMNKC 473 (485)
Q Consensus 469 ~~~~~ 473 (485)
++...
T Consensus 80 l~~~~ 84 (115)
T 2kat_A 80 LAAAQ 84 (115)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 88643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=7.5e-05 Score=56.02 Aligned_cols=112 Identities=12% Similarity=0.034 Sum_probs=79.9
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCC
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHR 100 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 100 (485)
.+|+++|++.|+++. ..+ .++. . +...|...+.+++|.++|++..+.+ +...+..+...|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa---~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKAC---ELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHH---HTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHH---cCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 356778888888877 334 2222 2 6666666677777888888877763 56677777777776 677
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 150 (485)
+++|+.+|++..+.| ++..+..+...|.. .++.++|.++|++..+.|
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888888877764 66677777777777 777888888887777765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=7.1e-06 Score=61.90 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=66.9
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcc----------hHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFR----------PAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
..+.+.+++|++.++.++ .-.|.++..|..+..++...++++ +|+..|+++++.++. +..+|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai----~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTY----KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence 456778889999999888 234667888888888888887765 777777777777665 66777777
Q ss_pred HHHHhccC-----------ChhhHHHHHHHHHhcCCCCCHhhH
Q 011463 92 CRGYGRVH-----------RPLDAMRVFDKMKEFGCEPTPKSY 123 (485)
Q Consensus 92 ~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 123 (485)
..+|...| ++++|++.|++..+. .|+...|
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 77776654 566666666666554 3444333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.7e-05 Score=70.13 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHH-
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLING- 200 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 200 (485)
.|..+..++.+.|++++|...+++.++.. +.+...+..+..++... |++++|...|+++.+.... +...+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYAPD-DKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 78889999999999999999999999865 23566777777788777 9999999999999876432 45566666655
Q ss_pred HHHcCCHhHHHHHHHHHHHC
Q 011463 201 LCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 201 ~~~~~~~~~a~~~~~~~~~~ 220 (485)
....+..+.+...|..|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 33456778888899988765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=4e-06 Score=60.30 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=51.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC------HHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT------EDIFL 89 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~ 89 (485)
..+...+...|++++|++.|++++. ..|.++..+..+..++...|++++|++.++++....+. + ...+.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~ 82 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLIT----AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHH
Confidence 3455566666666666666666662 22445666666666666666666666666666665433 2 34444
Q ss_pred HHHHHHhccCChhhHHHHHH
Q 011463 90 SICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~ 109 (485)
.+..++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 55555555555555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00047 Score=51.61 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHH
Q 011463 240 KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEA 315 (485)
Q Consensus 240 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 315 (485)
+++++|...|++..+.| .++.. +...|...+..++|.++|++..+.+ ++.....+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666665 22222 5555555566666777777766653 45566666666665 6677777
Q ss_pred HHHHHHHhHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 011463 316 VEILDRMKLQGLKPDAGLYGKIISCFCD----IGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 361 (485)
...|++..+.| +...+..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777776654 45566666666666 667777777777776655
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.7e-05 Score=51.36 Aligned_cols=81 Identities=6% Similarity=0.082 Sum_probs=50.8
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
...+..+...+...|++++|...+++.....+. +...+..+..++.+.|++++|...|++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455666666677777777777777777666543 55666666667777777777777777766653 3345555555544
Q ss_pred HHH
Q 011463 130 LVE 132 (485)
Q Consensus 130 ~~~ 132 (485)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.96 E-value=9.9e-05 Score=53.29 Aligned_cols=79 Identities=6% Similarity=-0.120 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 011463 30 KALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFD 109 (485)
Q Consensus 30 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 109 (485)
+|+..|+.++ ...|.++..+..+...+...|++++|...|+++....+. +...+..+..++...|++++|...|+
T Consensus 3 ~a~~~~~~al----~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAML----AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHH----TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHH----HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555 222344555555555555555555555555555555433 44455555555555555555555555
Q ss_pred HHHh
Q 011463 110 KMKE 113 (485)
Q Consensus 110 ~~~~ 113 (485)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=58.59 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=82.5
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh----------hhHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP----------LDAMRVFDKMKEFGCEPTPKSYITVLAIL 130 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (485)
.+.+.+++|.+.++...+.++. +...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 4567789999999999999876 889999999998888775 49999999999875 44678899999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 131 VEEN-----------QLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 131 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
...| ++++|.+.|++.++.. |+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 8774 8999999999999854 877766666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.3e-05 Score=55.32 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+...+..+...+...|++++|.+.|+++....+. +...+..+..++.+.|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777776554 5666777777777777777777777777664
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.86 E-value=9.1e-05 Score=50.66 Aligned_cols=80 Identities=5% Similarity=0.012 Sum_probs=66.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+...+...|++++|+..|++++. ..+.+...+..+..++...|++++|...++++....+. +...+..+..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 455678889999999999999999983 23567888999999999999999999999999998765 6777777777
Q ss_pred HHhcc
Q 011463 94 GYGRV 98 (485)
Q Consensus 94 ~~~~~ 98 (485)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=5.8e-05 Score=69.68 Aligned_cols=126 Identities=11% Similarity=0.032 Sum_probs=93.6
Q ss_pred HHHccCCHHHHHHHHHHHHhC---CCCC----CHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-----CC-CC-ChhhHH
Q 011463 235 GLCQSKSVEEAMRLFEEMRSK---GVEP----NVFTYSSLMDGLCKGGCSSQAMELLQMMISK-----RH-RP-NIVTYS 300 (485)
Q Consensus 235 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 300 (485)
.+...|++++|+.++++..+. -+.+ ...+++.+..+|...|++++|..++++.+.. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887643 1111 2467888999999999999999999887653 22 12 245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhHC-----CC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011463 301 TLLNGLCKEGKLQEAVEILDRMKLQ-----GL-KP-DAGLYGKIISCFCDIGKYQEAANFLDEMVLG 360 (485)
Q Consensus 301 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 360 (485)
.|...|...|++++|+.++++..+. |. +| ...+...+..++...+.+++|..++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999886542 31 22 2335566777888899999999999998763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00013 Score=51.14 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=46.9
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
|.++..+..+...+...|++++|++.|+++++.++. +...|..+..+|...|++++|+..|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445667777777777777777777777777777655 556677777777777777777777777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=50.07 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 011463 406 DSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNK 472 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 472 (485)
+...+..+..+|...|++++|++.|+++++.. +.+...|..+..+|...|++++|++.++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56677788888888888888888888888763 3345567778888888888888888888888654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0027 Score=43.37 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=55.1
Q ss_pred CCCHHhHHHHHHHHHhcCC---cchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 47 RHDNSTFSLMISKLVSANQ---FRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
+.++..+..+..++...++ .++|..++++.+..++. ++.....+...+.+.|++++|+..|+++.+.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888765554 68888888888888776 78888888888888899999999888888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=46.52 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 406 DSLTYSSLITCFCKKGD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 406 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
++..+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44555555555543333 466666666666542 223344444555566666666666666666665544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0055 Score=53.35 Aligned_cols=72 Identities=13% Similarity=-0.024 Sum_probs=61.2
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCccch
Q 011463 405 VDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEAEV 478 (485)
Q Consensus 405 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (485)
.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++++..++.+++.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 367788888777777899999999999999874 787777778888899999999999999999988766544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00079 Score=61.08 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCC----HHhHHHHHHHHHhcCCcchHHHHHHHHhhc-----CCC-C-CHHHHHHHHH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHD----NSTFSLMISKLVSANQFRPAEDLLDRVNKE-----KCD-I-TEDIFLSICR 93 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~ 93 (485)
.|++++|+.++++++........|+ ..+++.++.+|..+|++++|..++++++.. |+. | ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3455555555555543322222222 224555555555555555555555544332 111 1 1123444444
Q ss_pred HHhccCChhhHHHHHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKM 111 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~ 111 (485)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 444444444444444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0016 Score=45.16 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHH-hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNS-TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
..+..+...|++++|+..|+.++. ..+.++. .+..+..++...|++++|.+.|+++....+. +...+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ----TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-SPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH----HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHH-----
Confidence 456778889999999999999883 3355677 8888899999999999999999999888765 3333321
Q ss_pred hccCChhhHHHHHHHHH
Q 011463 96 GRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~ 112 (485)
+.+.++...|++..
T Consensus 75 ---~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDM 88 (99)
T ss_dssp ---HHHHHHHHHHCCTT
T ss_pred ---HHHHHHHHHHHHHh
Confidence 34455555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00072 Score=61.47 Aligned_cols=92 Identities=9% Similarity=0.007 Sum_probs=51.3
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcC---CCC----CHHHHHHHHHHHhccCChhhHHHHHHHHHhc-----C-CCC-CHhh
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEK---CDI----TEDIFLSICRGYGRVHRPLDAMRVFDKMKEF-----G-CEP-TPKS 122 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 122 (485)
+..+..+|++++|++++++++... ..+ ...+++.++.+|...|++++|+.++++.++. | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334445666666666666665432 111 1235566666666666666666666665431 1 011 2344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 123 YITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 123 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666667777777777776666553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.01 Score=51.70 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=25.5
Q ss_pred CCCHHhHHHHHHHHH--hcC---CcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 47 RHDNSTFSLMISKLV--SAN---QFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
|.++.+|...+++.. ..+ +..+|.++|+++++..|. ....+..+..+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 455666666554432 222 235677777777776554 444444444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0044 Score=42.83 Aligned_cols=59 Identities=14% Similarity=0.221 Sum_probs=47.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITED-IFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
.+..+...|++++|.+.++.+.+..+. +.. .+..+..++...|++++|++.|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456677888888888888888887655 666 78888888888888888888888888764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0025 Score=57.80 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=65.9
Q ss_pred ChhHHHHHHHHHHh---C--CCc-c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-hhhHHHHHHHH
Q 011463 387 DPNRAFQVYLSMRN---R--SIS-V-DSLTYSSLITCFCKKGDIHKSARIVDELVLD-----G-CLPD-EGTWSAVMTAL 452 (485)
Q Consensus 387 ~~~~a~~~~~~~~~---~--~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~p~-~~~~~~l~~~~ 452 (485)
++++|..++++.+. . |.. | ...+++.+..+|...|++++|+.++++.++. | -.|+ ..+++.+...|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 67888888887764 1 211 1 2467889999999999999999999998743 2 1233 34688899999
Q ss_pred HhcCcHHHHHHHHHHHHHc
Q 011463 453 WDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~ 471 (485)
...|++++|..+++++++-
T Consensus 393 ~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHH
Confidence 9999999999999998763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0077 Score=44.87 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHH
Q 011463 388 PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKG---DIHKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAA 462 (485)
Q Consensus 388 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 462 (485)
...+.+.|.+....+. ++..+.-.+..++++.+ +.++++.++++..+.+ .| ....+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3556667777776665 47778788888999988 6679999999999874 35 2445566778899999999999
Q ss_pred HHHHHHHHcCCCcc
Q 011463 463 ELLLLELMNKCVEA 476 (485)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (485)
++++++++..+...
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999776543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.90 E-value=3.8e-07 Score=80.50 Aligned_cols=259 Identities=14% Similarity=0.081 Sum_probs=117.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
+.++.+....++..+|++.|=++. |+..|..++.+..+.|.+++-+..+..+.+..- ++.+=+.|+.+|
T Consensus 58 s~LgkAqL~~~~v~eAIdsyIkA~---------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 58 SQLAKAQLQKGMVKEAIDSYIKAD---------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp SSHHHHTTTSSSCTTTTTSSCCCS---------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHhCC---------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 344444555555555444442222 333344455555555555555555544433311 223333455555
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAA 175 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 175 (485)
++.++..+-.+.+ . .|+..-...+..-|...|.++.|.-+|..+.. |..+...+.+. |++..|
T Consensus 127 Ak~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L-~~yq~A 189 (624)
T 3lvg_A 127 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHL-GEYQAA 189 (624)
T ss_dssp HTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSC-SGGGSS
T ss_pred HhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHH-HHHHHH
Confidence 5555543322221 1 23444444444445555555444444432211 11111112222 333333
Q ss_pred HHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 176 FKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
.+.- .+ .-++.+|..+-.+|...+.+.-|.-.--.+.-. ......++..|-..|.+++.+.+++.....
T Consensus 190 VdaA---rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGA---RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTT---TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHH---Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 2211 11 125567777777777777776665443333321 112233455566667777777777666533
Q ss_pred CCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHhcCCHHHH
Q 011463 256 GVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK-RHR------PNIVTYSTLLNGLCKEGKLQEA 315 (485)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a 315 (485)
. +.....|+.|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|..-.+++.|
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 2 34556666666666654 244444444432221 111 0233455555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0079 Score=42.12 Aligned_cols=58 Identities=10% Similarity=-0.002 Sum_probs=27.6
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCC------CccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 378 TVVQGLCKT-DPNRAFQVYLSMRNRS------ISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 378 ~l~~~~~~~-~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
.+...+... ++..|...|+.+.+.. ..+...++..+..++.+.|++++|...++++.+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333334443 5555555555544320 011334455555555555555555555555554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0095 Score=41.70 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=48.9
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCC---CCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCC
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANG---FRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCD 82 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 82 (485)
.|..++..+...|++..|..-|+.+....... ..+....+..+..++.+.|+++.|...++++.+..|.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45677888888888888888888877532221 1234566777777888888888888888877776554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.014 Score=52.92 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=67.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhHC-----C-CCC-CHHh
Q 011463 268 MDGLCKGGCSSQAMELLQMMISKR---HRP----NIVTYSTLLNGLCKEGKLQEAVEILDRMKLQ-----G-LKP-DAGL 333 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 333 (485)
+..+.+.|++++|..++++.++.. ..| ...+++.+..+|...|++++|+.++++.... | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788999999998887641 111 2356788888899999999999888876532 2 122 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVL 359 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 359 (485)
++.+...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999999888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.14 Score=39.27 Aligned_cols=130 Identities=8% Similarity=0.013 Sum_probs=78.4
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
.......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456778888888777655 2567788888888888888888888877653 34455556667777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHH
Q 011463 137 KLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKE 216 (485)
Q Consensus 137 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 216 (485)
++...+-+.....| - ++.....+... |+++++.++|.+.-+. |.. . ......|..+.|.++.++
T Consensus 77 e~L~kla~iA~~~g--~----~n~af~~~l~l-Gdv~~~i~lL~~~~r~---~eA-~-----~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE--D----FGSMLLNTFYN-NSTKERSSIFAEGGSL---PLA-Y-----AVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHTT--C----HHHHHHHHHHH-TCHHHHHHHHHHTTCH---HHH-H-----HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc--c----HHHHHHHHHHc-CCHHHHHHHHHHCCCh---HHH-H-----HHHHHcCcHHHHHHHHHH
Confidence 76666655555544 1 23333333334 7888888777665442 111 1 111224556667776665
Q ss_pred H
Q 011463 217 M 217 (485)
Q Consensus 217 ~ 217 (485)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.06 Score=39.58 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=78.3
Q ss_pred CCCHHhHHHHHHHHHhcCCc------chHHHHHHHHhhcCCCCCHHHHHHHHH------HHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQF------RPAEDLLDRVNKEKCDITEDIFLSICR------GYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 114 (485)
+.|+++|-..+..+-+.|+. ++..++|+++...-|+.....|...+. .+...++.++|.++|+.+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56788888888888888888 888888888877543211111222111 123347888999999988765
Q ss_pred CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011463 115 GCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKA 164 (485)
Q Consensus 115 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 164 (485)
. +.-...|......-.++|+...|.+++.+.+..+..| ...+...+..
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 2 3337777777787888999999999999988876433 4444555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.051 Score=39.93 Aligned_cols=118 Identities=11% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCc-ccccchhhhHHHHHHHHhc-CChhHHHHHHHHHH
Q 011463 328 KPDAGLYGKIISCFCDIGKY------QEAANFLDEMVLGGITPNR-LTWSLHIRIHNTVVQGLCK-TDPNRAFQVYLSMR 399 (485)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~~~ 399 (485)
+-|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|...+.++-..... .. .++++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 34666777777777666777 7777888877763 44542 2232222222222211 12 28889999999887
Q ss_pred hCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011463 400 NRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVM 449 (485)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 449 (485)
+.+-+. ...|......-.+.|+...|.+++.+.+..+.+| ...+...+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 654343 6677777777778999999999999998876443 33334333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.036 Score=55.44 Aligned_cols=151 Identities=14% Similarity=0.109 Sum_probs=86.8
Q ss_pred HhccCChhhHHH-HHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 95 YGRVHRPLDAMR-VFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 95 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
....+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. | ..-+. ..... |+++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~f~----~~l~~-~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-DQKFE----LALKV-GQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-HHHHH----HHHHH-TCHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-chhee----hhhhc-CCHH
Confidence 345677777765 44221 1122336666777778888887766531 1 11122 22334 8888
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMR 253 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 253 (485)
.|.++.+.+. +...|..+...+.+.++++.|++.|.++.. |..+...+...++.+...++.+...
T Consensus 670 ~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 8888765542 667888888889999999998888887643 3344455555666665555544444
Q ss_pred hCCCCCCHhhHHHHHHHHHcCCChHHHHHHHH
Q 011463 254 SKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQ 285 (485)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 285 (485)
..|. ++....+|.+.|++++|.+++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4321 1222333444455555544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.075 Score=53.14 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=94.8
Q ss_pred HHHHHccCCHHHHHH-HHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 19 LQLIRAEKDVNKALV-IFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
.......+++++|.+ ++.. + + +......++..+.+.|.++.|.++.+. .. .-......
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~-i-------~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~ 664 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPN-V-------E-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALK 664 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGG-C-------C-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHH
T ss_pred HhHHHHhCCHHHHHHHHHhc-C-------C-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhh
Confidence 344456788888866 4421 1 1 123347777888888888888876531 11 11334556
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. +..+...+... |+.+...+
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~-~~~~~~~~ 728 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSF-NNKEGLVT 728 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHT-TCHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHc-CCHHHHHH
Confidence 78999888876543 3678899999999999999999999987643 22333333334 66666555
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
+-+.....| -++.-..+|.+.|++++|+++|.++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 554444432 1223333455566666666655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.014 Score=43.44 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC---CcchHHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCCh
Q 011463 26 KDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN---QFRPAEDLLDRVNKEK-CDITEDIFLSICRGYGRVHRP 101 (485)
Q Consensus 26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 101 (485)
.....+.+.|+... ..+ +++..+...+..++++.+ +.++++.+|+.+.+.+ +.-+.+.+..+.-+|.+.|++
T Consensus 12 ~~l~~~~~~y~~e~---~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 12 EDLLKFEKKFQSEK---AAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp HHHHHHHHHHHHHH---HTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHH---ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 34455666666655 223 467777777777777777 5557777887777764 211355666666777777888
Q ss_pred hhHHHHHHHHHhc
Q 011463 102 LDAMRVFDKMKEF 114 (485)
Q Consensus 102 ~~a~~~~~~~~~~ 114 (485)
++|.+.++.+++.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 8888888777775
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.015 Score=52.17 Aligned_cols=375 Identities=11% Similarity=0.090 Sum_probs=210.4
Q ss_pred CCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 11 TKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 11 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
.+-.+..++.+..+.|.+++-++.+.-+. +. ..++..=+.++-+|++.++..+..+++. .|+..-...
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaR---k~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMAR---KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTS---TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHH---HH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 45567789999999999999999998877 22 3344455778999999999887655542 356666777
Q ss_pred HHHHHhccCChhhHHHHHHHHHhcC--------------------CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 91 ICRGYGRVHRPLDAMRVFDKMKEFG--------------------CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 91 l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
+.+-|...|.++.|.-+|..+.... -..++.+|..+-.+|...+++..|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh- 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH- 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-
Confidence 7888888888888877776553211 1346788999999999999888776554444421
Q ss_pred CCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCC------
Q 011463 151 IQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK-ACS------ 223 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------ 223 (485)
|+ .+..++..|-.. |.+++.+.+++.-... -......|+.|.-.|++- ++++..+.++..-.+ +++
T Consensus 229 --ad--eL~elv~~YE~~-G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 --AD--ELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp --SS--CCSGGGSSSSTT-CCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred --HH--HHHHHHHHHHhC-CCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 21 123344445455 8888888888776643 223566777777777664 444444444332111 111
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHH-------------HHHHhCCCCCCHhhH---------------HHHHHHHHcCC
Q 011463 224 PTVVTYTSLINGLCQSKSVEEAMRLF-------------EEMRSKGVEPNVFTY---------------SSLMDGLCKGG 275 (485)
Q Consensus 224 ~~~~~~~~ll~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~---------------~~l~~~~~~~~ 275 (485)
-....|..++-.|.+-.+++.|.... .++... ..+...| +-|+.++...=
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prl 379 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRL 379 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTC
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccC
Confidence 12344555566666555555543221 000000 1122333 33444444444
Q ss_pred ChHHHHHHHHHHHhC----------CCCCChhhHHHHHHHHHhcCCHHHHHH------------HHHHHhHCCCCCCHHh
Q 011463 276 CSSQAMELLQMMISK----------RHRPNIVTYSTLLNGLCKEGKLQEAVE------------ILDRMKLQGLKPDAGL 333 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~ 333 (485)
|...+.++|++.-.. ....+..+-.++-..|....|++.-.. +-+++.+ ++-...
T Consensus 380 Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk---HeL~eF 456 (624)
T 3lvg_A 380 DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK---HELIEF 456 (624)
T ss_dssp CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT---CSSHHH
T ss_pred ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh---CchHHH
Confidence 444444444432110 011123334455555666666554332 2222222 122333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCccchhhHHH
Q 011463 334 YGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSS 412 (485)
Q Consensus 334 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 412 (485)
-......|.+.++|++++.+.++ ...|. -.+.....+ +.+-+.++++-..+.| +...|..
T Consensus 457 RrIAA~LYkkn~rw~qsi~l~Kk---------Dklyk-------DAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a 517 (624)
T 3lvg_A 457 RRIAAYLFKGNNRWKQSVELCKK---------DSLYK-------DAMQYASESKDTELAEELLQWFLQEE---KRECFGA 517 (624)
T ss_dssp HHHHHHHHHTTCHHHHHSSCSST---------TCCTT-------GGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHh---------cccHH-------HHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHH
Confidence 33444556677777777655321 12222 222233334 7777787877777654 4566777
Q ss_pred HHHHHHhcCCHHHHHHH
Q 011463 413 LITCFCKKGDIHKSARI 429 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~ 429 (485)
.+..|...=+++-++++
T Consensus 518 ~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 518 CLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHTSSSSSCHHHHHH
T ss_pred HHHHHhhccChHHHHHH
Confidence 77666666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.72 Score=38.60 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-CCChH
Q 011463 208 YEAKELFKEMETKACSPT---VVTYTSLINGLCQS-----KSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK-GGCSS 278 (485)
Q Consensus 208 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 278 (485)
..|...+++..+. .|+ ...|..+...|... |+.++|.+.|++..+.+..-+..++......++. .|+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4555566666553 344 44677777777773 7788888888887776432235666666777766 37778
Q ss_pred HHHHHHHHHHhCCCC
Q 011463 279 QAMELLQMMISKRHR 293 (485)
Q Consensus 279 ~a~~~~~~~~~~~~~ 293 (485)
.+.+.+++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 888888887776544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.035 Score=39.74 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHK---SARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQA 461 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 461 (485)
....+.+-|.+....+. ++..+--.+.+++.+..+..+ ++.+++...+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 44555666666655444 466676777888888887665 899999988763 24 233444567789999999999
Q ss_pred HHHHHHHHHcCCCccc
Q 011463 462 AELLLLELMNKCVEAE 477 (485)
Q Consensus 462 ~~~~~~~~~~~~~~~~ 477 (485)
.++++.+++..+....
T Consensus 94 ~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 9999999997765443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.066 Score=44.74 Aligned_cols=63 Identities=5% Similarity=0.077 Sum_probs=29.3
Q ss_pred hHHHHHHHHHh-----cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CChhhHHHHHHHHHhc
Q 011463 52 TFSLMISKLVS-----ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV-HRPLDAMRVFDKMKEF 114 (485)
Q Consensus 52 ~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 114 (485)
.|..++..|.. .|+.++|.+.|++.++.++.-+..++......++.. |+.+.+.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 44444444444 245555555555555444332344444444444442 4455555555554443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.57 Score=35.88 Aligned_cols=129 Identities=12% Similarity=0.089 Sum_probs=78.6
Q ss_pred HHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM 172 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 172 (485)
......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|... |+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~t-g~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVT-GDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHH-TCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHh-CCH
Confidence 3445678888888877655 2677888888888888888888888876643 22232233334 777
Q ss_pred HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 011463 173 DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM 252 (485)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 252 (485)
+...++-+.....| -++.-..++...|+++++.++|.+.... |.. .......|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~---~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL---PLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---HHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---HHH------HHHHHHcCcHHHHHHHHHHh
Confidence 76666555555443 2444555566778888888887665331 111 11112246667777776655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.49 Score=34.08 Aligned_cols=140 Identities=15% Similarity=0.087 Sum_probs=94.3
Q ss_pred HhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC
Q 011463 307 CKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT 386 (485)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (485)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..++++.+-+ ..|.. .+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis-----------------~C 74 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD-----------------KC 74 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG-----------------GC
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH-----------------hh
Confidence 4467777777777777663 2455566666555555666666666665533 11111 11
Q ss_pred -ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHH
Q 011463 387 -DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELL 465 (485)
Q Consensus 387 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 465 (485)
+......-+-.+ + .+...++..++.+...|.-++..+++..+... -+|+......+..||.+.|+..+|.+++
T Consensus 75 ~NlKrVi~C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 222222222222 1 15677788889999999999999999996543 4788888999999999999999999999
Q ss_pred HHHHHcCCCc
Q 011463 466 LLELMNKCVE 475 (485)
Q Consensus 466 ~~~~~~~~~~ 475 (485)
.++-++|...
T Consensus 149 ~~AC~kG~kE 158 (172)
T 1wy6_A 149 IEACKKGEKE 158 (172)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHhhhHH
Confidence 9999998654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.18 Score=37.97 Aligned_cols=72 Identities=6% Similarity=-0.010 Sum_probs=49.8
Q ss_pred ccccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-------HhHHHHHHHHHhcCCcchHHHHHHHHh
Q 011463 5 TMFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN-------STFSLMISKLVSANQFRPAEDLLDRVN 77 (485)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 77 (485)
..+.-.+.+....-++.+...|.++.|+-+.+.+.... ...++. .++..++.++...|++.+|...|++++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~--~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLS--NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44556677888888899999999999999999877432 122331 256777889999999999999999865
Q ss_pred h
Q 011463 78 K 78 (485)
Q Consensus 78 ~ 78 (485)
.
T Consensus 91 q 91 (167)
T 3ffl_A 91 Q 91 (167)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.54 Score=41.97 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASLNVL 161 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 161 (485)
+...++..+...|++.+++..+..+.... |.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45556777778888888888888877654 55777888888888888888888888887653 4788877655444
Q ss_pred HHH
Q 011463 162 IKA 164 (485)
Q Consensus 162 l~~ 164 (485)
-..
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.14 Score=36.66 Aligned_cols=86 Identities=19% Similarity=0.092 Sum_probs=42.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcch---HHHHHHHHhhcC-CCCCHHHHHHHHHHHhccCC
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRP---AEDLLDRVNKEK-CDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 100 (485)
......+.+-|+... ..+ +++..+--.+..++.+.++... ++.+++.+.+.+ +.-.......+.-++.+.|+
T Consensus 14 ~~~l~~~~~~y~~e~---~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEK---AAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHH---HHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHh---ccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 334444455555444 112 2455555555555555554444 555666555543 11123344445555556666
Q ss_pred hhhHHHHHHHHHhc
Q 011463 101 PLDAMRVFDKMKEF 114 (485)
Q Consensus 101 ~~~a~~~~~~~~~~ 114 (485)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=1.1 Score=32.41 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCC
Q 011463 229 YTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKR 291 (485)
Q Consensus 229 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 291 (485)
+...+......|.-+...+++..+... .+|++...-.+..+|.+.|+..++.+++.++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344444444555555555555543222 24444444455555555555555555555554444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.93 E-value=0.26 Score=35.45 Aligned_cols=73 Identities=5% Similarity=0.004 Sum_probs=54.7
Q ss_pred CCccchhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 402 SISVDSLTYSSLITCFCKKGDI---HKSARIVDELVLDGCLP--DEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
+..|+..+--.+.+++.++.+. .+++.+++.+.+.+ | ....+-.+.-++.+.|++++|.++.+.+++..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 5556666666677788877654 57888999988764 4 234555677789999999999999999999765544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.72 Score=33.65 Aligned_cols=73 Identities=5% Similarity=-0.037 Sum_probs=51.1
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 404 SVDSLTYSSLITCFCKKGD---IHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 404 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
.|+..+--.+.+++.++.+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 4566666667777877765 456888888888753111233444566788999999999999999999765543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.79 E-value=1 Score=46.72 Aligned_cols=192 Identities=8% Similarity=0.034 Sum_probs=109.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC----C-----------
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEK----C----------- 81 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~----------- 81 (485)
.++..+...+.++-|.++..... .++..-..+++++...|++++|.+.|++....- .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~--------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN--------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 34555666677766666544332 344444556777777888888888776652210 0
Q ss_pred -------CCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCH----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 82 -------DITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP----KSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 82 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
..-..-|..++..+.+.|.++.++++-....+..-+.+. ..|..+...+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 001134566777777778888777776666543211111 246777777888888888877777666544
Q ss_pred CCCCHHHHHHHHHHHHhc-----------CCChHHHHHHHHhhhhCC--CCCCHHhHHHHHHHHHHcCCHhHHHH-HHHH
Q 011463 151 IQPCVASLNVLIKALCKN-----------SGTMDAAFKIFREMPNRG--CTPDSYTYGTLINGLCRLGKIYEAKE-LFKE 216 (485)
Q Consensus 151 ~~~~~~~~~~ll~~~~~~-----------~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~ 216 (485)
. -...+..++..++.. .|..++..+++....+.. +...+..|..|-..+...|++..|-. +|+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 2 334455555555533 145566666665433221 11122345555555667777766544 4555
Q ss_pred HH
Q 011463 217 ME 218 (485)
Q Consensus 217 ~~ 218 (485)
+.
T Consensus 1047 ~~ 1048 (1139)
T 4fhn_B 1047 LS 1048 (1139)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.73 Score=44.72 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011463 304 NGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEM 357 (485)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 357 (485)
..|...|+++.|+.+-++..... |-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888888888877753 445678888888888888888888887776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.83 Score=44.34 Aligned_cols=127 Identities=11% Similarity=0.054 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCC-hhhHHHHHHHHHhcCCCCCHhhH--HHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCCC---
Q 011463 88 FLSICRGYGRVHR-PLDAMRVFDKMKEFGCEPTPKSY--ITVLAILVEEN-QLKLAFRFYRHMREI------GIQPC--- 154 (485)
Q Consensus 88 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~--- 154 (485)
-..++..+...++ .+.|..+|+++.+.. |....+ ..++..+...+ +--+|.+++.+..+. ..++.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555666 477999999988764 433332 22333322222 223455555544321 11111
Q ss_pred --------HHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011463 155 --------VASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEME 218 (485)
Q Consensus 155 --------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 218 (485)
....+.-...+... |+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K-~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNR-GDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhcc-CcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11233334444555 99999999999988863 3367899999999999999999999888874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=2.2 Score=37.98 Aligned_cols=78 Identities=10% Similarity=-0.024 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-----CCCCCCHHhHHH
Q 011463 122 SYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-----RGCTPDSYTYGT 196 (485)
Q Consensus 122 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 196 (485)
+...++..+...|++.++...+..+.... +.+...+..++.++.+. |+..+|++.|+...+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~-Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45667788889999999999999988765 45777899999999998 999999999988754 489998876554
Q ss_pred HHHHH
Q 011463 197 LINGL 201 (485)
Q Consensus 197 l~~~~ 201 (485)
.-...
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.98 E-value=6 Score=41.16 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc----C-------------
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF----G------------- 115 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------- 115 (485)
...++..+...+.++-+.++...... ++..--.+..++...|++++|.+.|.+.... +
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 44567788899999988887766543 3444455778899999999999999765210 0
Q ss_pred -----CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 116 -----CEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCV----ASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 116 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
...-..-|..++..+.+.+.++.+.++-...++...+-+. ..|..+...+... |++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l-~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA-GKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH-CCSGGGGHHHHHHHHSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh-CCHHHHHHHHHhCCCHH
Confidence 0112456788999999999999999998887765322221 2567788888888 99999999998877653
Q ss_pred CCCCHHhHHHHHHHHHHc------------CCHhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHccCCHHHH-HHHHHH
Q 011463 187 CTPDSYTYGTLINGLCRL------------GKIYEAKELFKEMETKA--CSPTVVTYTSLINGLCQSKSVEEA-MRLFEE 251 (485)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 251 (485)
. -..+...|+..++.. |..++..+++..-.... +...+.-|..|-.-+...|++.+| .-+|+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 3 345666666655544 44567777765433221 111122244444445566666554 445555
Q ss_pred HHh
Q 011463 252 MRS 254 (485)
Q Consensus 252 ~~~ 254 (485)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=8.7 Score=36.56 Aligned_cols=119 Identities=13% Similarity=0.052 Sum_probs=63.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCC-hhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCH
Q 011463 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTD-PNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDI 423 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 423 (485)
.+.+.|...+....+... .+..... .+...+........ ..++...+......... .....-.+....+.|++
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~---~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~r~Alr~~d~ 301 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQ---ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS--TSLIERRVRMALGTGDR 301 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHH---HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHH---HHHHHHHHHHHHcCCChHHHHHHHhccccCCC--hHHHHHHHHHHHHCCCH
Confidence 367888888877754321 1211111 01112222222223 55666666665543322 22233333444567888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 011463 424 HKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELM 470 (485)
Q Consensus 424 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 470 (485)
+.|...|+.|.... .....-.--+..++.+.|+.++|..+|+++.+
T Consensus 302 ~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 302 RGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888876531 11122222345667788888888888888765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.57 E-value=1.5 Score=29.66 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=47.0
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+.-+..+-+..+......|++.+..+.+++|.+.+++.-|+++|+-...+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 33445566666677788889999999999999999999999999888765 3344455766654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=3.3 Score=30.21 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=44.5
Q ss_pred CCCHHhHHHHHHHHHhcCCcc---hHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 47 RHDNSTFSLMISKLVSANQFR---PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.|++.+--....++.++.+.+ +++.+++.+.+.++.-..+..-.+.-++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 466666556666666666443 56777777776654434455556666777777777777777777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.59 E-value=9.8 Score=34.59 Aligned_cols=50 Identities=8% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCHhHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 205 GKIYEAKELFKEMETK-----ACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 205 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
|+++.|++.+..+.+. ....+......++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5667777666555432 1222344556666777777777776666655543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.20 E-value=4.4 Score=29.18 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSA 447 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 447 (485)
+..+++.+++.+.+.++.-....+-.+.-++.+.|++++|.+..+.+.+. .|+..-...
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~ 116 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 66789999999987664334566677888999999999999999999986 676554443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.82 E-value=8.1 Score=29.10 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHhcC-CCCC-------HhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 88 FLSICRGYGRVHRPLDAMRVFDKMKEFG-CEPT-------PKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 88 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
+..-+..+...|.++.|+-+.+.+.... ..|+ ..++..+..++...+++..|...|++.+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3334445555566666665555543320 1122 1234555566666777777777766654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.64 E-value=12 Score=33.84 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhc--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEF--GCEPTPKSYITVLAILVEENQLKLAFRFYRHMR 147 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 147 (485)
+...+...|.+.|+++.|.+.|.++... +...-...+...++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556666777777777777777776543 222234556666666777777777776666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.57 E-value=18 Score=30.81 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHH
Q 011463 225 TVVTYTSLINGLCQSKSVEEAMRLF 249 (485)
Q Consensus 225 ~~~~~~~ll~~~~~~~~~~~a~~~~ 249 (485)
++.....+...|.+.+++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 3444555555666666666665555
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.12 E-value=8.5 Score=34.80 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC---CCCCCHhh--HH
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEMETKAC--SPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK---GVEPNVFT--YS 265 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 265 (485)
+...+...|.+.|+++.|.+.|.++..... ..-...+-..++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566778888888888888888888876422 223445666777888888888888888776532 22222211 01
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 266 SLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 266 ~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
.-...+...+++..|...|-.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122334578888888887776554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.03 E-value=5.2 Score=32.98 Aligned_cols=53 Identities=15% Similarity=-0.055 Sum_probs=28.4
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+.+.|++++|++....-++..|. |...-..+++.+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555555555555555555443 555555555555555555555555555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.02 E-value=11 Score=27.15 Aligned_cols=60 Identities=8% Similarity=0.112 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 390 RAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+..+-+..+......|++.+....+++|.+.+|+.-|+++|+-...+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34455556666778889999999999999999999999999888765 3444556776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.75 E-value=42 Score=33.69 Aligned_cols=153 Identities=14% Similarity=0.101 Sum_probs=71.8
Q ss_pred HHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHH--HHH
Q 011463 305 GLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIIS--CFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHN--TVV 380 (485)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 380 (485)
.+...|+.+....++..+.+.. +..+...+.. ++...|+.+.+..+++.+... .+.. .+... ++.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~-----vRygaa~alg 567 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESL-----LRYGGAFTIA 567 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHH-----HHHHHHHHHH
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHH-----HHHHHHHHHH
Confidence 3455677776677776665531 3333333333 334567777777777766542 1111 11111 222
Q ss_pred HHHhcC-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcH-
Q 011463 381 QGLCKT-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKM- 458 (485)
Q Consensus 381 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~- 458 (485)
.+|+.. +.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 233344 4444444666665432 1123322233334444566566666665555432 33333333333333334332
Q ss_pred HHHHHHHHHHHH
Q 011463 459 RQAAELLLLELM 470 (485)
Q Consensus 459 ~~A~~~~~~~~~ 470 (485)
.++++.+.++..
T Consensus 646 ~~aid~L~~L~~ 657 (963)
T 4ady_A 646 QSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 466666666654
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.23 E-value=9.3 Score=25.77 Aligned_cols=80 Identities=11% Similarity=0.127 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
....++|..+-+.+. ..+. ...+-..-+..+...|+|++|..+.+... .||...|..+... +.|-.+++
T Consensus 20 ~H~HqEA~tIAdwL~---~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 20 NHYHEEANCIAEWLH---LKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp TTCHHHHHHHHHHHH---HTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHH
T ss_pred chHHHHHHHHHHHHH---hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345666777766666 2221 22222222345566777777776665443 3566666555433 55666666
Q ss_pred HHHHHHHHhcC
Q 011463 105 MRVFDKMKEFG 115 (485)
Q Consensus 105 ~~~~~~~~~~~ 115 (485)
...+.++...|
T Consensus 89 e~rL~~la~sg 99 (116)
T 2p58_C 89 ESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 66666665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.89 E-value=9.8 Score=25.79 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=39.0
Q ss_pred ChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHH
Q 011463 171 TMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLI 233 (485)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 233 (485)
+.=+..+-++.+...+..|++....+.+++|.+.+++..|.++|+.+..+- .+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444566666666666677777777777777777777777777777665542 22233455444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=81.18 E-value=26 Score=30.16 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011463 294 PNIVTYSTLLNGLCKEGKLQEAVEIL 319 (485)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 319 (485)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666677777777888888777766
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.52 E-value=8.7 Score=25.85 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
....++|..+-+.+. ..+. ...+-..-+..+...|+|++|..+.+... .||...|..+... +.|-.+++
T Consensus 19 ~H~HqEA~tIAdwL~---~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 19 QHCHEEALCIAEWLE---RLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp TTCHHHHHHHHHHHH---HTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHH
T ss_pred chHHHHHHHHHHHHH---hCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345667777776666 2221 22222222345567777777776655443 4566666555433 56666666
Q ss_pred HHHHHHHHhcC
Q 011463 105 MRVFDKMKEFG 115 (485)
Q Consensus 105 ~~~~~~~~~~~ 115 (485)
...+.++...|
T Consensus 88 e~rL~~la~sg 98 (115)
T 2uwj_G 88 DRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHTCS
T ss_pred HHHHHHHHhCC
Confidence 66666666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 485 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 9/214 (4%)
Query: 145 HMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSY-TYGTLINGLCR 203
+++ I QP A + + G + A F + P+ Y L N L
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKE 215
Query: 204 LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFT 263
A + + + V + +L + ++ A+ +
Sbjct: 216 ARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDA 273
Query: 264 YSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMK 323
Y +L + L + G ++A + + L N ++G ++EAV + K
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEEAVRLYR--K 330
Query: 324 LQGLKPD-AGLYGKIISCFCDIGKYQEAANFLDE 356
+ P+ A + + S GK QEA E
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.34 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.25 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.76 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.65 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.4 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.33 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.05 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.02 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.99 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.87 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.39 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.04 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.75 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.88 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.75 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.25 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.13 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.33 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.71 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.4e-24 Score=193.12 Aligned_cols=383 Identities=14% Similarity=0.099 Sum_probs=255.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR 97 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (485)
++..+.+.|++++|++.|+++++ ..|.++.++..++.++.+.|++++|...++++++.+|. +..++..+..+|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhh
Confidence 56677888888888888888873 23556778888888888888888888888888887765 67788888888888
Q ss_pred cCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHH
Q 011463 98 VHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFK 177 (485)
Q Consensus 98 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 177 (485)
.|++++|+..+....+.. +.+..............+....+.............. .............. +....+..
T Consensus 80 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 156 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-YCVRSDLGNLLKAL-GRLEEAKA 156 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-THHHHHHHHHHHTT-SCHHHHHH
T ss_pred hccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccccc-chhhhhHH
Confidence 888888888888887764 3445555555555556666666666655555443222 22233333333343 66677776
Q ss_pred HHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011463 178 IFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGV 257 (485)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 257 (485)
.+........ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.....+
T Consensus 157 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 233 (388)
T d1w3ba_ 157 CYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-
Confidence 6666665532 255666777777777777777777777766542 2245566666777777777777777777766653
Q ss_pred CCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHH
Q 011463 258 EPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKI 337 (485)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (485)
+.+...+..+...+.+.|++++|...++++.+..+. +..++..+...+...|++++|...++...... +.+...+..+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 311 (388)
T d1w3ba_ 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHH
Confidence 334555666666677777777777777776665332 45566666666677777777777776665543 4455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHH
Q 011463 338 ISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCF 417 (485)
Q Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 417 (485)
..++...|++++|+..+++..+. .|+ +..++..+..+|
T Consensus 312 ~~~~~~~~~~~~A~~~~~~al~~--~p~----------------------------------------~~~~~~~la~~~ 349 (388)
T d1w3ba_ 312 ANIKREQGNIEEAVRLYRKALEV--FPE----------------------------------------FAAAHSNLASVL 349 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTS--CTT----------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCC----------------------------------------CHHHHHHHHHHH
Confidence 66666666666666666666542 232 445566677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCc
Q 011463 418 CKKGDIHKSARIVDELVLDGCLPD-EGTWSAVMTALWDRRK 457 (485)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 457 (485)
...|++++|++.|+++++. .|+ ...|..++.+|.+.||
T Consensus 350 ~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888887765 443 4567777777776664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-22 Score=181.19 Aligned_cols=369 Identities=16% Similarity=0.113 Sum_probs=275.2
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
+...+.+.|++++|.+.++++.+..|. +...+..+..+|.+.|++++|+..|++..+.+ |.+..++..+..++...|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 456678899999999999999988765 78889999999999999999999999998865 4567888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHH
Q 011463 136 LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFK 215 (485)
Q Consensus 136 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 215 (485)
+++|.+.+....+... .+.............. +....+............. ...............+....+...+.
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccc-ccccccccccccccccccc-cccccccccccccccchhhhhHHHHH
Confidence 9999999999887652 2333333333333333 5555555555554444322 44445555666677777788877777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCC
Q 011463 216 EMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPN 295 (485)
Q Consensus 216 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 295 (485)
...... +.+...+..+...+...|++++|...++...+.. +-+...+..+...+...|++++|...++........ +
T Consensus 160 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 776553 2355667777788888888888888888877653 335667777788888888888888888887776433 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhh
Q 011463 296 IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRI 375 (485)
Q Consensus 296 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (485)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.++...... |
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----------- 302 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--P----------- 302 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--T-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--C-----------
Confidence 6667777777888888888888888877764 3456677777777888888888877777665421 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011463 376 HNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDR 455 (485)
Q Consensus 376 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 455 (485)
.+...+..+...+...|++++|++.|++.++.. +.+...+..++.+|.+.
T Consensus 303 -----------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 352 (388)
T d1w3ba_ 303 -----------------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp -----------------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT
T ss_pred -----------------------------ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 145567778888999999999999999998762 33456788899999999
Q ss_pred CcHHHHHHHHHHHHHcCCCcc
Q 011463 456 RKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~~ 476 (485)
|++++|++.++++++.++..+
T Consensus 353 g~~~~A~~~~~~al~l~P~~~ 373 (388)
T d1w3ba_ 353 GKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp TCCHHHHHHHHHHHTTCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999765433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.2e-14 Score=126.86 Aligned_cols=228 Identities=12% Similarity=0.070 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcC
Q 011463 55 LMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEEN 134 (485)
Q Consensus 55 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (485)
..+..+.+.|++++|+..|+++++..|. +..+|..+..++...|++++|+..|++..+.. |-+...+..+..++...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 4455566666666666666666666554 56666666666666666666666666666543 334556666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH----------------HHHHHHHHhcCCChHHHHHHHHhhhhCCC-CCCHHhHHHH
Q 011463 135 QLKLAFRFYRHMREIGIQPCVASL----------------NVLIKALCKNSGTMDAAFKIFREMPNRGC-TPDSYTYGTL 197 (485)
Q Consensus 135 ~~~~a~~~~~~~~~~~~~~~~~~~----------------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 197 (485)
++++|.+.+++..... |+.... ...+..+... +.+.++...+....+... ..+...+..+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHh-hHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 6666666666665532 221110 0011111122 334445555544443321 1234445555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCCh
Q 011463 198 INGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCS 277 (485)
Q Consensus 198 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (485)
...+...|++++|...|++..... +.+...|..+..++...|++++|...|++..+.. +-+...+..+..+|.+.|++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~ 256 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 256 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCH
Confidence 555555555555555555554432 1234445555555555555555555555555432 22344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 011463 278 SQAMELLQMMIS 289 (485)
Q Consensus 278 ~~a~~~~~~~~~ 289 (485)
++|++.|+++++
T Consensus 257 ~~A~~~~~~al~ 268 (323)
T d1fcha_ 257 REAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.8e-14 Score=125.78 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=187.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
...+..+.+.|++++|+..|+.++ ...|.++.+|..++.++...|++++|...+.++.+..+. +...+..++..|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al----~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 97 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAV----QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF 97 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccc
Confidence 456778999999999999999999 344667899999999999999999999999999998776 788999999999
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhh----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHH
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKS----------------YITVLAILVEENQLKLAFRFYRHMREIGI-QPCVASL 158 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 158 (485)
...|++++|.+.+++..... |+... ....+..+...+.+.++.+.+.+..+... .++...+
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~ 175 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 175 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred cccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999987753 22111 11122334456678889999988877542 2345566
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc
Q 011463 159 NVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ 238 (485)
Q Consensus 159 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 238 (485)
..+...+... |++++|...++........ +...|..+..++...|++++|.+.|++..+.. +-+..++..+..+|.+
T Consensus 176 ~~l~~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 176 CGLGVLFNLS-GEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHH-HHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHH
Confidence 6666677776 9999999999999887433 68889999999999999999999999998763 2357788999999999
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011463 239 SKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 239 ~~~~~~a~~~~~~~~~~ 255 (485)
.|++++|+..|++..+.
T Consensus 253 ~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 253 LGAHREAVEHFLEALNM 269 (323)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998763
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.3e-10 Score=98.12 Aligned_cols=211 Identities=7% Similarity=0.025 Sum_probs=148.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcC-CcchHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSAN-QFRPAEDLLDRVNKEKCDITEDIFLSICRG 94 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (485)
..+..++.+.+.+++|+++++.++ .-.|.+..+|+....++...| ++++|++.++.+++.+++ +..+|..+...
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai----~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAI----ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHH----HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 355667778888888888888888 234566778888888887766 478888888888888776 78888888888
Q ss_pred HhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCC---
Q 011463 95 YGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGT--- 171 (485)
Q Consensus 95 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--- 171 (485)
+.+.|++++|++.++++.+.. +.+..+|..+..++...|++++|++.++++++.+ +-+...|+.....+.+. +.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~-~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNT-TGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHc-cccch
Confidence 888888888888888888765 4567888888888888888888888888888865 23455555554444443 33
Q ss_pred ---hHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 011463 172 ---MDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSP-TVVTYTSLINGL 236 (485)
Q Consensus 172 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~ 236 (485)
+++|+..+..+.+..+. +...|..+...+.. ...+++.+.++...+....+ +...+..+...|
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 56777777777776433 66777766655443 34567777777665542222 233344444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.2e-10 Score=96.53 Aligned_cols=198 Identities=6% Similarity=-0.012 Sum_probs=141.6
Q ss_pred HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccC-ChhhHHHHHHHHHhcCCCCCHhhHHHHHH
Q 011463 50 NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVH-RPLDAMRVFDKMKEFGCEPTPKSYITVLA 128 (485)
Q Consensus 50 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 128 (485)
..++..+...+.+.+.+++|+++++.+++.+|. +..+|+....++...| ++++|+..+++..+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 456777777888888999999999999998876 7888888888888776 4789999999888765 456788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC--
Q 011463 129 ILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK-- 206 (485)
Q Consensus 129 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 206 (485)
++.+.|++++|++.+.++.+.. +-+...|..+...+... |++++|+..++.+.+.++. +...|+.+..++.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~-~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 8888888888888888888754 23466677777777666 8888888888888887543 66777777766666554
Q ss_pred ----HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011463 207 ----IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRS 254 (485)
Q Consensus 207 ----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 254 (485)
+++|++.+.+..+.. +.+...|+.+...+.. ...+++...++...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 456666666665542 2245555555444433 234555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=2.6e-10 Score=97.87 Aligned_cols=221 Identities=10% Similarity=0.055 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhc--------------CCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 28 VNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSA--------------NQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+++..+|++++. ..+.++..|...+..+... +..++|..+|++.....++.+...|...+.
T Consensus 32 ~~Rv~~vyerAl~----~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~ 107 (308)
T d2onda1 32 TKRVMFAYEQCLL----VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4557777888772 3355666666655544322 223556666666665433335556666666
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChH
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMD 173 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 173 (485)
...+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+++.+.+. .+...+...........|+.+
T Consensus 108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHH
Confidence 6666677777777777666543222234566666666666666777777766665441 122222222221112225666
Q ss_pred HHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCC--hhhHHHHHHHHHccCCHHHHHHHHH
Q 011463 174 AAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKA-CSPT--VVTYTSLINGLCQSKSVEEAMRLFE 250 (485)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~ 250 (485)
.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++..... ..|. ...|...+.--...|+.+.+..+++
T Consensus 187 ~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666542 2245566666666666666666666666655542 1221 2244555544455566666666665
Q ss_pred HHHh
Q 011463 251 EMRS 254 (485)
Q Consensus 251 ~~~~ 254 (485)
++.+
T Consensus 266 r~~~ 269 (308)
T d2onda1 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=3.5e-10 Score=97.05 Aligned_cols=192 Identities=10% Similarity=0.087 Sum_probs=142.2
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 011463 276 CSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLD 355 (485)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 355 (485)
..++|..++++.++...+.+...+...+......|+++.|..+++++..........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 35678888888887644556667777888888899999999999998876432334578888888888999999999999
Q ss_pred HHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011463 356 EMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVL 435 (485)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 435 (485)
++.+.+ |+..... +..+.+......+.+.|..+|+.+.+..+. +...|...+..+...|+.+.|..+|++.++
T Consensus 159 ~al~~~--~~~~~~~----~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 159 KAREDA--RTRHHVY----VTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHTST--TCCTHHH----HHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhC--CCcHHHH----HHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 988754 3322211 111222222233888899999999876444 678899999999999999999999999988
Q ss_pred CC-CCCC--hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 011463 436 DG-CLPD--EGTWSAVMTALWDRRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 436 ~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (485)
.. ..|+ ...|...+..-...|+.+.+.++++++.+.-..
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~ 273 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence 63 3443 346788887777889999999999998876543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=3e-11 Score=105.36 Aligned_cols=267 Identities=7% Similarity=-0.012 Sum_probs=167.5
Q ss_pred cCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH----------hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 63 ANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY----------GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 63 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
.+..++|+++++.++..+|. +...|+..-..+ ...|++++|+..++...+.+ |.+...|..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 33447888888888887765 555665433332 22344678888888887764 4467777777777666
Q ss_pred cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHH
Q 011463 133 EN--QLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEA 210 (485)
Q Consensus 133 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 210 (485)
.+ ++++|...+.++.+.. +++...+......+....+.++.|+..++.+.+.++. +...|+.+..++.+.|++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHH
Confidence 55 4788888888888764 2345555444443444348889999999888887544 788888888888888888877
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhC
Q 011463 211 KELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISK 290 (485)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 290 (485)
...+....+. .|+ .......+...+..+++...+....... +++...+..+...+...|+..+|...+......
T Consensus 198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555544332 111 1122233344455556666666665553 334444555555666667777777777776655
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHH
Q 011463 291 RHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCF 341 (485)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 341 (485)
.+. +..++..+..++...|++++|...++.+.+.. |.+...|..+...+
T Consensus 272 ~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~ 320 (334)
T d1dcea1 272 NKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 320 (334)
T ss_dssp CHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHH
Confidence 322 44556666777777777777777777777652 22334455454444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.7e-09 Score=95.04 Aligned_cols=274 Identities=13% Similarity=0.019 Sum_probs=168.5
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhCC----C-CCCHhhHHHH
Q 011463 197 LINGLCRLGKIYEAKELFKEMETKACSPT----VVTYTSLINGLCQSKSVEEAMRLFEEMRSKG----V-EPNVFTYSSL 267 (485)
Q Consensus 197 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l 267 (485)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+.. . ......+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455566666666666666655421111 1234455566666677777776666654321 0 0012334455
Q ss_pred HHHHHcCCChHHHHHHHHHHHhC----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCC----CCCHHhHHH
Q 011463 268 MDGLCKGGCSSQAMELLQMMISK----RHRPN---IVTYSTLLNGLCKEGKLQEAVEILDRMKLQGL----KPDAGLYGK 336 (485)
Q Consensus 268 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~ 336 (485)
...+...|++..+...+...... ..... ...+..+...+...|+++.+...+........ ......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 56667777777777777765432 11111 22444556677788888888888877665321 122345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcC-ChhHHHHHHHHHHhCCCcc---chhhHHH
Q 011463 337 IISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKT-DPNRAFQVYLSMRNRSISV---DSLTYSS 412 (485)
Q Consensus 337 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~~~~~~ 412 (485)
....+...++...+...+.+.......... .......++......+... +++.|...++......... ....+..
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 666777888888888888776542111110 0111122233444455555 8999999999887654332 2344566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 011463 413 LITCFCKKGDIHKSARIVDELVLD----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMN 471 (485)
Q Consensus 413 l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 471 (485)
+..++...|++++|...++++... +..|+ ...+..+..+|.+.|++++|.+.++++++.
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788999999999999999988642 33443 345677888999999999999999998774
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=9e-11 Score=98.23 Aligned_cols=222 Identities=12% Similarity=-0.075 Sum_probs=138.4
Q ss_pred cCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhH
Q 011463 25 EKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDA 104 (485)
Q Consensus 25 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 104 (485)
..+.+.|+..+++++.......+....+|..++.+|.+.|++++|++.|++++...|. ++.+|..+..+|.+.|++++|
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHh
Confidence 4456677777888773211111113457888899999999999999999999998876 889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCChHHHHHHHHhhh
Q 011463 105 MRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPC-VASLNVLIKALCKNSGTMDAAFKIFREMP 183 (485)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 183 (485)
+..|++..+.+ |.+..++..+..++...|++++|...|++..+.. |+ ......+.....+. +..+.+..+.....
T Consensus 91 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 166 (259)
T d1xnfa_ 91 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFE 166 (259)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHh-hhHHHHHHHHHHhh
Confidence 99999999875 4457788889999999999999999999998865 43 32222222222333 44444444444444
Q ss_pred hCCCCCCHHhHHHHHHHHHHcCCH----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 184 NRGCTPDSYTYGTLINGLCRLGKI----YEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
..... ...+. ++..+...... +.+...+...... .+....++..+...+...|++++|...|+.....
T Consensus 167 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 167 KSDKE--QWGWN-IVEFYLGNISEQTLMERLKADATDNTSL-AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HSCCC--STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccchh--hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 43221 11222 22222211111 1111111111110 0011234555666666677777777777766654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.5e-09 Score=95.40 Aligned_cols=164 Identities=12% Similarity=-0.004 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC----HHHHHHHHHHHhccCChhhHHHHHHHHHhcCCC-C----CHhhH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDIT----EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCE-P----TPKSY 123 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~ 123 (485)
.......+...|++++|.+++++.+...+..+ ..++..+..++...|++++|+..|++..+.... + ....+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33344555666666666666666665543322 124445556666666666666666665432100 0 12233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--CH-HHHHHHHHHHHhcCCChHHHHHHHHhhhhCC----CCCCHH
Q 011463 124 ITVLAILVEENQLKLAFRFYRHMREI----GIQP--CV-ASLNVLIKALCKNSGTMDAAFKIFREMPNRG----CTPDSY 192 (485)
Q Consensus 124 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 192 (485)
..+...+...|++..+...+...... +... .. ..+..+...+... |+++.+...+....... ......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh-cchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 44445555666666666665554421 1111 11 1122222333333 55555555555444321 111223
Q ss_pred hHHHHHHHHHHcCCHhHHHHHHHHH
Q 011463 193 TYGTLINGLCRLGKIYEAKELFKEM 217 (485)
Q Consensus 193 ~~~~l~~~~~~~~~~~~a~~~~~~~ 217 (485)
.+..+...+...+++..+...+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a 198 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRL 198 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3334444445555555555544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.25 E-value=4.5e-11 Score=104.17 Aligned_cols=272 Identities=9% Similarity=-0.038 Sum_probs=195.8
Q ss_pred HHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHH----------hcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 20 QLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLV----------SANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 20 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
......+..++|++++++++. ..|.+...|+.....+. ..|++++|+.+++.+.+.+++ +...|.
T Consensus 37 ~~~~~~~~~~~al~~~~~~l~----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~ 111 (334)
T d1dcea1 37 QKRQAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (334)
T ss_dssp HHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHhcccccHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 333444456899999999993 33455666655444433 334578999999999998876 888888
Q ss_pred HHHHHHhccC--ChhhHHHHHHHHHhcCCCCCHhhHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011463 90 SICRGYGRVH--RPLDAMRVFDKMKEFGCEPTPKSYI-TVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALC 166 (485)
Q Consensus 90 ~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 166 (485)
.+..++...+ ++++|+..+.++.+.. +++...+. .....+...+.+++|+..++++.+.+ +-+...++.+...+.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 8888777765 4789999999998875 44566654 44466777899999999999998865 235666777777777
Q ss_pred hcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHH
Q 011463 167 KNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAM 246 (485)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 246 (485)
.. |++++|...++...+. ... ...+...+...+..+++...+....... +++...+..+...+...++..+|.
T Consensus 190 ~~-~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 190 QL-HPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HH-SCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred Hh-cCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 76 8888887666655543 111 1223444566788888888888887663 345666677778888889999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011463 247 RLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLC 307 (485)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 307 (485)
..+.+..+.+ +.+...+..+..++...|++++|.+.++.+++..+. +...|..+...+.
T Consensus 263 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~~ 321 (334)
T d1dcea1 263 KELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHh
Confidence 9999888764 335677788889999999999999999999986321 3445555554444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.5e-10 Score=96.88 Aligned_cols=196 Identities=14% Similarity=-0.065 Sum_probs=139.6
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.+..+..++.+.|++++|++.|++++. -.|.++.+|..++.++.+.|++++|++.|+++++..+. +..++..+..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 113 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALA----IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHH
Confidence 445678889999999999999999993 34667899999999999999999999999999999876 6778999999
Q ss_pred HHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCh-
Q 011463 94 GYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTM- 172 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~- 172 (485)
++...|++++|+..|++..+.. +.+......+...+.+.+..+.+..+........ +....++ ++..+... ...
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~-~~~~ 188 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGN-ISEQ 188 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTS-SCHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHH-HHHH
Confidence 9999999999999999998875 3455555555555566666666666666655533 2222222 22222221 111
Q ss_pred ---HHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 011463 173 ---DAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK 220 (485)
Q Consensus 173 ---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 220 (485)
+.+...+....... +-...+|..+...+...|++++|.+.|++....
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 189 TLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 22222211111110 112346777899999999999999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.2e-08 Score=80.13 Aligned_cols=127 Identities=11% Similarity=-0.008 Sum_probs=103.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
...+...|++++|++.|+.+. +|++.+|..++.++...|++++|++.|+++++.++. ....|..+..+|.+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhh
Confidence 456788999999999998766 678888999999999999999999999999999876 788999999999999
Q ss_pred CChhhHHHHHHHHHhcCC--------------CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 011463 99 HRPLDAMRVFDKMKEFGC--------------EPT-PKSYITVLAILVEENQLKLAFRFYRHMREIGIQP 153 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 153 (485)
|++++|+..|++...... +.+ ..++..+..++...|++++|.+.+....+....+
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999998865310 011 2445667778888999999999988887755333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.6e-08 Score=72.05 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=55.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+...|++++|+..|++++. ..|.++..|..+..++...|++++|+..++.+++.++. +...|..+..++...
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK----LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh----cCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHc
Confidence 4455566666666666666662 23445566666666666666666666666666666554 555666666666666
Q ss_pred CChhhHHHHHHHHHhc
Q 011463 99 HRPLDAMRVFDKMKEF 114 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~ 114 (485)
|++++|+..|++..+.
T Consensus 85 ~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKH 100 (117)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 6666666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.83 E-value=5.3e-06 Score=68.64 Aligned_cols=225 Identities=11% Similarity=0.030 Sum_probs=123.7
Q ss_pred CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHhcCCCCCHhhHH
Q 011463 49 DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGR----VHRPLDAMRVFDKMKEFGCEPTPKSYI 124 (485)
Q Consensus 49 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 124 (485)
||..+..+...+...+++++|++.|++..+.+ +...+..|...|.. ..++..|...+......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45666677777777778888888887777654 55566666666654 456677777777766644 444444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCChHHHHHHHHhhhhCCCCCCHHhHHHH
Q 011463 125 TVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCK---NSGTMDAAFKIFREMPNRGCTPDSYTYGTL 197 (485)
Q Consensus 125 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 197 (485)
.+...+.. ..+.+.|...++...+.|. ....+. +...+.. .......+...+......+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHh-hcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44444433 4566777777777776552 222121 1111111 1144555566665555432 45556666
Q ss_pred HHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011463 198 INGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMD 269 (485)
Q Consensus 198 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 269 (485)
...+.. ..+...+..+++...+.| +......+...|.. ..++++|...|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666654 234455555555555442 34444444444443 345666666666666554 3334444444
Q ss_pred HHHc----CCChHHHHHHHHHHHhCC
Q 011463 270 GLCK----GGCSSQAMELLQMMISKR 291 (485)
Q Consensus 270 ~~~~----~~~~~~a~~~~~~~~~~~ 291 (485)
.|.+ ..+.++|.++|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4443 225556666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.6e-08 Score=67.87 Aligned_cols=105 Identities=15% Similarity=0.000 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+...+..+...|++++|+..|+++++..|. +...|..+..+|.+.|++++|+..+++..+.+ +.++..|..+..++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 344577788899999999999999888776 78889999999999999999999999988875 5678888889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVL 161 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 161 (485)
.|++++|+..|++..+.. |+...+...
T Consensus 84 ~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 110 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE--ANNPQLKEG 110 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC--TTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999999988744 655444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=1.8e-07 Score=78.88 Aligned_cols=133 Identities=15% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCC-CCCC-HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC-----CHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANG-FRHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI-----TEDIF 88 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~ 88 (485)
...+.++...|++++|++.|+++..-.... .+++ ..+|..++.+|.+.|++++|.+.+++........ ...++
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 344455555555555555555554211111 1111 2345555555555555555555555443321110 01233
Q ss_pred HHHHHHHh-ccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 89 LSICRGYG-RVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 89 ~~l~~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
..+...|. ..|++++|++.+++..+. +.++ ...++..+...+...|++++|.+.|+++..
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 33333332 235555555555544321 1000 122344444555555555555555555444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=7.9e-08 Score=72.85 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=57.1
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV 98 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (485)
+..+.+.|++++|+..|++++. -.|.+...|..+..++...|++++|.+.|+.+++.++. +..+|..++.++...
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE----LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHhhhccc----cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 4455666666666666666662 22445666666666666666666666666666666544 556666666666666
Q ss_pred CChhhHHHHHHHHHhc
Q 011463 99 HRPLDAMRVFDKMKEF 114 (485)
Q Consensus 99 ~~~~~a~~~~~~~~~~ 114 (485)
|++++|...+++....
T Consensus 92 g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV 107 (159)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6666666666666654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=3.1e-07 Score=77.41 Aligned_cols=167 Identities=12% Similarity=0.042 Sum_probs=91.4
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHH
Q 011463 89 LSICRGYGRVHRPLDAMRVFDKMKEF----GCEP-TPKSYITVLAILVEENQLKLAFRFYRHMREI----GIQ-PCVASL 158 (485)
Q Consensus 89 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 158 (485)
......|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |.. .....+
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 120 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHH
Confidence 33455677777777777777776542 1111 1345677777777777777777777766542 100 012233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhhhhC----CCCC-CHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCh------h
Q 011463 159 NVLIKALCKNSGTMDAAFKIFREMPNR----GCTP-DSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTV------V 227 (485)
Q Consensus 159 ~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~ 227 (485)
..+...+....|++++|...+++..+. +.++ ...++..+...+...|++++|.+.|++.......... .
T Consensus 121 ~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~ 200 (290)
T d1qqea_ 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (290)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHH
Confidence 333333433237777777777665432 1111 1234566666777777777777777776554222111 1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011463 228 TYTSLINGLCQSKSVEEAMRLFEEMRSK 255 (485)
Q Consensus 228 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 255 (485)
.+...+.++...+++..|...++...+.
T Consensus 201 ~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 201 YFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1233344455566666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.70 E-value=1.3e-05 Score=66.13 Aligned_cols=225 Identities=12% Similarity=0.023 Sum_probs=136.8
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE----ENQLKLAFRFYRHMREIGIQPCVASLN 159 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 159 (485)
|+..+..|...+...+++++|++.|++..+.| +..++..|...|.. ..+...+...+......+. .....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 45567777778888899999999999988865 66677777777766 6678888888888877652 22222
Q ss_pred HHHHHHHh---cCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCCCChhhHHHH
Q 011463 160 VLIKALCK---NSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCR----LGKIYEAKELFKEMETKACSPTVVTYTSL 232 (485)
Q Consensus 160 ~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 232 (485)
.+...+.. ...+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 22222221 12567788888888777653 2333333333332 33455666666665543 245556666
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----CCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 233 INGLCQ----SKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCK----GGCSSQAMELLQMMISKRHRPNIVTYSTLLN 304 (485)
Q Consensus 233 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 304 (485)
...+.. ..+...+...++...+.| +......+...|.. ..++++|..+|....+.| ++..+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 666654 345666666666666654 44444444444443 456677777777776654 3445555555
Q ss_pred HHHh----cCCHHHHHHHHHHHhHCC
Q 011463 305 GLCK----EGKLQEAVEILDRMKLQG 326 (485)
Q Consensus 305 ~~~~----~~~~~~a~~~~~~~~~~~ 326 (485)
.|.. ..+.++|...|++....|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5543 335666777777666655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1e-06 Score=68.71 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=74.5
Q ss_pred HHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCH
Q 011463 57 ISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQL 136 (485)
Q Consensus 57 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 136 (485)
+..+...|+++.|++.|+.+. +++..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 566788999999999998653 3577888889999999999999999999998876 55688899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 011463 137 KLAFRFYRHMREI 149 (485)
Q Consensus 137 ~~a~~~~~~~~~~ 149 (485)
++|...|++....
T Consensus 87 ~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 87 DLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=1.9e-07 Score=74.05 Aligned_cols=99 Identities=10% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHH
Q 011463 48 HDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVL 127 (485)
Q Consensus 48 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 127 (485)
|+...+...+..+.+.|++++|+..|++++...|. +...|..+..+|.+.|++++|+..|++..+.. |-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 45555555566666666666666666666665544 55566666666666666666666666665543 22455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 011463 128 AILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 128 ~~~~~~~~~~~a~~~~~~~~~ 148 (485)
.++...|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.65 E-value=6.9e-08 Score=67.98 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=46.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCC
Q 011463 56 MISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQ 135 (485)
Q Consensus 56 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (485)
.+..+.+.|++++|+..|++++...|. +..+|..+..++.+.|++++|+..|++..+.+ |.+..+|..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 344445555555555555555555443 45555555555555555555555555555443 3344555555555555555
Q ss_pred HHHHHHHHHHH
Q 011463 136 LKLAFRFYRHM 146 (485)
Q Consensus 136 ~~~a~~~~~~~ 146 (485)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.2e-07 Score=68.15 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
+...+..+.+.|++++|+..|+++++.++. +...|..+..+|...|++++|+..|++.++.+ +.+..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHH
Confidence 445566778888888888888888888766 78888888888888888888888888888765 4566788888888888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 011463 133 ENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~ 150 (485)
.|++++|...+++.....
T Consensus 91 ~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK 108 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 888888888888888754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=6.5e-08 Score=76.80 Aligned_cols=94 Identities=6% Similarity=-0.077 Sum_probs=84.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
......+.+.|++++|+..|++++. ..|.++..|..++.+|.+.|++++|+..|+.+++..|. +..+|..+..+|
T Consensus 8 ~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~ 82 (201)
T d2c2la1 8 KEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ 82 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 4567889999999999999999983 34678999999999999999999999999999998766 788999999999
Q ss_pred hccCChhhHHHHHHHHHhc
Q 011463 96 GRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|++++|+..|++..+.
T Consensus 83 ~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.59 E-value=2.6e-07 Score=64.90 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=79.0
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICR 93 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 93 (485)
.....+..+.+.|++++|+..|++++. ..|.++.+|..++.++.+.|++++|+..|+++++.+|. +..++..+..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~ 92 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQ----KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 92 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcc----cccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHH
Confidence 455677888889999999999999883 33557888999999999999999999999999888766 7888888999
Q ss_pred HHhccCChhhHHHHHHHHH
Q 011463 94 GYGRVHRPLDAMRVFDKMK 112 (485)
Q Consensus 94 ~~~~~~~~~~a~~~~~~~~ 112 (485)
.|...|++++|++.+++.+
T Consensus 93 ~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 93 SHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 9999999999999888753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=3.1e-07 Score=65.29 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=55.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc---chHHHHHHHHhhcCCCCC-HHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF---RPAEDLLDRVNKEKCDIT-EDIFLSIC 92 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~ 92 (485)
.+++.+...+++++|.+.|+.++ ...|.++.++..++.++.+.++. ++|+.+|+++...++.|+ ..++..+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL----~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEK----AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 34555666666666666666666 22345566666666666654433 346666666665543332 23555666
Q ss_pred HHHhccCChhhHHHHHHHHHhc
Q 011463 93 RGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 93 ~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+|.+.|++++|++.|+++.+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666666664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=7.2e-07 Score=63.34 Aligned_cols=107 Identities=9% Similarity=0.093 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCCh---hhHHHHHHHHHhcCCCCC-HhhHHHHHHH
Q 011463 54 SLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRP---LDAMRVFDKMKEFGCEPT-PKSYITVLAI 129 (485)
Q Consensus 54 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 129 (485)
..++..+...+++++|.+.|+..+..++. +..++..+..++.+.++. ++|+.+|+++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 45778888999999999999999998876 888888899988876544 569999999887643333 3467888899
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011463 130 LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIK 163 (485)
Q Consensus 130 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 163 (485)
|.+.|++++|.+.|+++++.. |+......+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~--P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE--PQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 999999999999999999854 76655444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.4e-06 Score=64.18 Aligned_cols=97 Identities=10% Similarity=-0.034 Sum_probs=62.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCC-----------HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHD-----------NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITED 86 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 86 (485)
.+..+.+.|++++|+..|++++.......... ..+|..+..+|.+.|++++|+..++.++..+|. ++.
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~ 97 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEK 97 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-chh
Confidence 45678899999999999999884321111111 123455556666666666666666666666554 566
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHhcC
Q 011463 87 IFLSICRGYGRVHRPLDAMRVFDKMKEFG 115 (485)
Q Consensus 87 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 115 (485)
++..+..+|...|++++|+..|++..+.+
T Consensus 98 a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 98 GLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 66666666666666666666666666643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.40 E-value=8.2e-06 Score=61.91 Aligned_cols=97 Identities=9% Similarity=0.027 Sum_probs=58.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCH-----------HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRHDN-----------STFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 85 (485)
..+..+.+.|++.+|+..|+.++.........+. .+|..+..+|.+.|++++|+..++.++..++. +.
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~ 98 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NE 98 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hH
Confidence 3567788999999999999988854333322222 12334455555555666666665555555443 55
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+|..+..++...|++++|+..|++..+.
T Consensus 99 ~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 99 KGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=0.00043 Score=58.04 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=134.7
Q ss_pred cCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHH
Q 011463 10 STKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFL 89 (485)
Q Consensus 10 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (485)
+....-..+++.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k 73 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 73 (336)
T ss_dssp C----------------CTTTHHHHHHHTT------------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHH
Confidence 344555566666777777777777776554 14556666677777777766665441 455666
Q ss_pred HHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011463 90 SICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNS 169 (485)
Q Consensus 90 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 169 (485)
.+...+.+......+ .+.......++.....++..|-..|.+++...+++...... ..+...++.++..+++.
T Consensus 74 ~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~- 146 (336)
T d1b89a_ 74 EVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 146 (336)
T ss_dssp HHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh-
Confidence 666666655544332 11122223344555566677777777777777777654321 34555566666666654
Q ss_pred CChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHC--------CCCCChhhHHHHHHHHHccCC
Q 011463 170 GTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETK--------ACSPTVVTYTSLINGLCQSKS 241 (485)
Q Consensus 170 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~ 241 (485)
+.++..+.++.... ..+ ...++..|.+.+-++++.-++.++... ..+++.......+..+.+..+
T Consensus 147 -~~~kl~e~l~~~s~---~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N 219 (336)
T d1b89a_ 147 -KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN 219 (336)
T ss_dssp -CHHHHHHHHHHHST---TSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSS
T ss_pred -ChHHHHHHHHhccc---cCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCC
Confidence 33444433333211 111 122333444444444444333332110 001122222222333333333
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 242 VEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 242 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
.+. +-.++..|... +++-...++..+... . ....++..+.+.+++......++.
T Consensus 220 ~e~-------------------~~~~i~~yL~~-~p~~i~~lL~~v~~~-~-----d~~r~V~~~~k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 220 VEL-------------------YYRAIQFYLEF-KPLLLNDLLMVLSPR-L-----DHTRAVNYFSKVKQLPLVKPYLRS 273 (336)
T ss_dssp THH-------------------HHHHHHHHHHH-CGGGHHHHHHHHGGG-C-----CHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred hHH-------------------HHHHHHHHHHc-CHHHHHHHHHHhccC-C-----CHHHHHHHHHhcCCcHHHHHHHHH
Confidence 332 22233333221 122222222222111 1 123455666677777777788877
Q ss_pred HhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 322 MKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDE 356 (485)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 356 (485)
....| +..+.+++...|...++++.-.+..+.
T Consensus 274 v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 274 VQNHN---NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence 66654 456888888889888887665555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=0.00047 Score=57.80 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=152.4
Q ss_pred CCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHH
Q 011463 47 RHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITV 126 (485)
Q Consensus 47 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 126 (485)
.||..-...++..|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+. -+..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence 3555566777888999999999999998654 3777888889999999998887654 267789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCC
Q 011463 127 LAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGK 206 (485)
Q Consensus 127 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 206 (485)
...+.+..+...+ .+...+...+......++..+-.. |.++....+++..... -..+...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~-~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~- 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK- 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHc-CChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-
Confidence 9999888776543 222333445666677788888777 9999999999987654 2447778889999888865
Q ss_pred HhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH----------HhCCCCCCHhhHHHHHHHHHcCCC
Q 011463 207 IYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEM----------RSKGVEPNVFTYSSLMDGLCKGGC 276 (485)
Q Consensus 207 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~ 276 (485)
.++..+.++... +......++..|.+.+-++++.-++..+ .+. .++..-...++..+.+.++
T Consensus 148 ~~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N 219 (336)
T d1b89a_ 148 PQKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVAN 219 (336)
T ss_dssp HHHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSS
T ss_pred hHHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCC
Confidence 344444444321 1122233444455555555544444432 222 3445455667778888888
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011463 277 SSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDR 321 (485)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 321 (485)
.+...++....++. ++...+.++......-+..+..+.+++
T Consensus 220 ~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 220 VELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp THHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence 88888887777664 455667788888777888877777754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.33 E-value=3.3e-06 Score=64.54 Aligned_cols=137 Identities=10% Similarity=0.055 Sum_probs=92.8
Q ss_pred cccccCCCChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCH
Q 011463 6 MFKWSTKITSAQVLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITE 85 (485)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 85 (485)
.+++................|++++|.+.|..++.- .+-+.. ......+.+...-..+... ..
T Consensus 5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l----~rG~~l---------~~~~~~~w~~~~r~~l~~~----~~ 67 (179)
T d2ff4a2 5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALRE----WRGPVL---------DDLRDFQFVEPFATALVED----KV 67 (179)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CCSSTT---------GGGTTSTTHHHHHHHHHHH----HH
T ss_pred hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----Cccccc---------ccCcchHHHHHHHHHHHHH----HH
Confidence 344455555666777889999999999999999832 111110 0111112222222222221 34
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 011463 86 DIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMRE-----IGIQPCVASLNV 160 (485)
Q Consensus 86 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 160 (485)
..+..++..+.+.|++++|+..++++.+.. |-+...|..++.++...|+..+|++.|+++.+ .|+.|...+-..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 567788888888999999999999888875 56788888999999999999999988888743 588888765433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=4.6e-06 Score=62.14 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=57.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhhhcCCCCC-CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 011463 17 QVLQLIRAEKDVNKALVIFDSATAEYANGFRH-DNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGY 95 (485)
Q Consensus 17 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (485)
.-+..+.+.|++++|+..|+.++......... +..... .... ....++..+..+|
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhhh----HHHHHHhhHHHHH
Confidence 34567888999999999999888321111111 111000 0000 0112444555555
Q ss_pred hccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 96 GRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 96 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
.+.|++++|++.+++.++.+ |.+..+|..+..++...|++++|...|++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666666555543 334555555566666666666666666655553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.7e-06 Score=61.19 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=46.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC------HHHHHHH
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT------EDIFLSI 91 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l 91 (485)
+...+.+.|++++|++.|+.++. -.|.++.++..+..+|.+.|++++|++.++.++...+... ..+|..+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKE----LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 44555556666666666665552 2234455555556666666666666666655554322100 1233344
Q ss_pred HHHHhccCChhhHHHHHHHHHh
Q 011463 92 CRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 92 ~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
...+...+++++|++.|++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4444555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=8.8e-06 Score=58.41 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=78.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCC-------HhhHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPT-------PKSYI 124 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~ 124 (485)
.+..++..+...|++++|++.|.++++.++. +..++..+..+|.+.|++++|++.++++++.. +.+ ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4566788899999999999999999998876 78889999999999999999999999987642 112 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 125 TVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 125 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.+...+...+++++|.+.|++.....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 66777778888999999998877643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=4.5e-06 Score=63.53 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhhcC------------CCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCC
Q 011463 16 AQVLQLIRAEKDVNKALVIFDSATAEYAN------------GFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDI 83 (485)
Q Consensus 16 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 83 (485)
......+...|++++|++.|++++..... ..+.+...|..+..++.+.|++++|+..+..+++..+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~- 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS- 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-
Confidence 34466777888999998888877621000 00111223333444444444444444444444444333
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 84 TEDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 84 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
+..+|..+..++...|++++|+..|++..+
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.4e-05 Score=60.64 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHhccCChhhHHHHHHHHHhcCC
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT--------------EDIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 116 (485)
..+...+..+.+.|++++|+..|.+++...+... ..++..+..+|.+.|++++|+..++..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 3455667788899999999999988876532211 1223334444444555555555555544433
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
|.++.++..+..++...|++++|...|++..+
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22444444444555555555555555555444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=4.1e-05 Score=56.78 Aligned_cols=127 Identities=11% Similarity=-0.018 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 011463 52 TFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILV 131 (485)
Q Consensus 52 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (485)
.+..-+..+.+.|++.+|+..|..++..-+.. ....... ....... ....+|..+..+|.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~---------------~~~~~~~-~~~~~~~----~~~~~~~Nla~~~~ 78 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHT---------------EEWDDQI-LLDKKKN----IEISCNLNLATCYN 78 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC---------------TTCCCHH-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcch---------------hhhhhHH-HHHhhhh----HHHHHHhhHHHHHH
Confidence 45556677888999999999998887642210 0000000 0111111 13457788999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHH
Q 011463 132 EENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGL 201 (485)
Q Consensus 132 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (485)
+.|++++|++.++++++.. +.+...+..+..++... |++++|...|+...+.++. +..+...+-.+.
T Consensus 79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 145 (153)
T d2fbna1 79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYF-GFLEEAKENLYKAASLNPN-NLDIRNSYELCV 145 (153)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 9999999999999999875 34677888888888888 9999999999999987543 566655554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=2.1e-06 Score=78.11 Aligned_cols=228 Identities=12% Similarity=-0.025 Sum_probs=121.6
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 011463 68 PAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTP-KSYITVLAILVEENQLKLAFRFYRHM 146 (485)
Q Consensus 68 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 146 (485)
+|.+.|+++....+. ....+..+..++...|++++| |++++..+ |+- ..++.. ..+. ...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e-~~Lw-~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE-QDLW-NHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH-HHHH-HHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH-HHHH-HHHHHHHHHHHHHh
Confidence 577888888776543 345666677777777777765 66666532 321 112111 1111 12244566667666
Q ss_pred HHcCCCCCHHHHHHH-HHHHHhcCCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 011463 147 REIGIQPCVASLNVL-IKALCKNSGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPT 225 (485)
Q Consensus 147 ~~~~~~~~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 225 (485)
.+....++....... ...+....+.++.++..+....+.. +++...+..+...+.+.|+.+.|...+....... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 654433333322222 1111111255566665555544432 2255667778888888888888888777665431 2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011463 226 VVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNG 305 (485)
Q Consensus 226 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 305 (485)
..++..+...+...+++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+.+... +|-+.++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3467778888888899999999999888774 4466788888888889999999999998888764 3466777777766
Q ss_pred HHhc
Q 011463 306 LCKE 309 (485)
Q Consensus 306 ~~~~ 309 (485)
+.+.
T Consensus 230 ~~~~ 233 (497)
T d1ya0a1 230 LSKA 233 (497)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.09 E-value=4.9e-06 Score=61.23 Aligned_cols=73 Identities=10% Similarity=0.015 Sum_probs=50.1
Q ss_pred HHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCc----------chHHHHHHHHhhcCCCCCHHHHHHH
Q 011463 22 IRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQF----------RPAEDLLDRVNKEKCDITEDIFLSI 91 (485)
Q Consensus 22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l 91 (485)
+.+.+.+++|++.|+.++ ...|.++.++..+..++...+++ ++|+..|+++++.+|. +..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al----~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTY----KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH----hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhH
Confidence 556777899999999988 33477788888888888755443 5566666666666554 55666666
Q ss_pred HHHHhccC
Q 011463 92 CRGYGRVH 99 (485)
Q Consensus 92 ~~~~~~~~ 99 (485)
..+|...|
T Consensus 82 G~~y~~~g 89 (145)
T d1zu2a1 82 GNAYTSFA 89 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 66655443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.05 E-value=3.2e-06 Score=69.08 Aligned_cols=125 Identities=14% Similarity=0.037 Sum_probs=83.5
Q ss_pred HHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 011463 21 LIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHR 100 (485)
Q Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 100 (485)
-..++|++++|+..+++.+ ...|.|...+..++..++..|++++|.+.++...+..+. +...+..+...+...+.
T Consensus 5 ~aL~~G~l~eAl~~l~~al----~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~ 79 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAI----KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQA 79 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHH----HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccc
Confidence 3567899999999999988 344778889999999999999999999999999887654 44555555555443333
Q ss_pred hhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 011463 101 PLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIG 150 (485)
Q Consensus 101 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 150 (485)
.+++..-.......+-++....+......+...|+.++|.+.++++.+..
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33322221111111212233444555666778899999999988887643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.02 E-value=0.00015 Score=54.98 Aligned_cols=128 Identities=10% Similarity=-0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHH
Q 011463 53 FSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVE 132 (485)
Q Consensus 53 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 132 (485)
...........|++++|.+.|...+..-..+ . +.......-+...-..+.. .....+..+...+..
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~---------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGP-V---------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-T---------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCccc-c---------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3445567889999999999999998763221 0 0111111222222233322 235678889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhh-----CCCCCCHHhHHH
Q 011463 133 ENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPN-----RGCTPDSYTYGT 196 (485)
Q Consensus 133 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 196 (485)
.|++++|...++++.+.. +-+...+..++..+... |+.++|++.|+++.+ .|+.|+..+-..
T Consensus 80 ~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~-Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEH-PYREPLWTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred CCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 999999999999999876 45778899999999998 999999999999754 589998766443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=1.5e-06 Score=79.17 Aligned_cols=229 Identities=8% Similarity=-0.066 Sum_probs=131.7
Q ss_pred HHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 011463 29 NKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVF 108 (485)
Q Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 108 (485)
-+|.+.|+++..- -+..+.++..+..++...|++++| |++++..++. .....+... .+. ...+..+.+.+
T Consensus 3 ~eA~q~~~qA~~l----~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~-~Lw-~~~y~~~ie~~ 72 (497)
T d1ya0a1 3 LQSAQYLRQAEVL----KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQ-DLW-NHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHH----HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHH-HHH-HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHc----CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHH-HHH-HHHHHHHHHHH
Confidence 3789999999832 133356778888899999988876 7777765322 111111111 111 12245677777
Q ss_pred HHHHhcCCCCCHhhHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 109 DKMKEFGCEPTPKSYITVLAI--LVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
+...+....++.......... ....+.++.++..+....+.. +++...+..+...+.+. |+.+.|...+.......
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQ-THTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhC-CCHHHHHHHHHHHhCCC
Confidence 777654333333322222222 223455555555555444322 12334445555555555 88899888877765531
Q ss_pred CCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 011463 187 CTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSS 266 (485)
Q Consensus 187 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 266 (485)
...++..+...+...|++++|...|++..+.. +.+...|+.+...+...|+..+|...|.+..... +|-..++..
T Consensus 151 ---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n 225 (497)
T d1ya0a1 151 ---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN 225 (497)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 23577788999999999999999999998863 3366899999999999999999999999999875 567778888
Q ss_pred HHHHHHcC
Q 011463 267 LMDGLCKG 274 (485)
Q Consensus 267 l~~~~~~~ 274 (485)
|...+.+.
T Consensus 226 L~~~~~~~ 233 (497)
T d1ya0a1 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87776543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.98 E-value=0.00012 Score=55.10 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred HhHHHHHHHHHhcCCcchHHHHHHHHhhcC---CCCCH-----------HHHHHHHHHHhccCChhhHHHHHHHHHhcCC
Q 011463 51 STFSLMISKLVSANQFRPAEDLLDRVNKEK---CDITE-----------DIFLSICRGYGRVHRPLDAMRVFDKMKEFGC 116 (485)
Q Consensus 51 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 116 (485)
..+...+..+.+.|++++|...|..++..- ...+. .+|..+..+|.+.|++++|+..++.....+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 446667788889999999999988766431 11111 123334455555666666666666655543
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 117 EPTPKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 117 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
|.+..+|..+..++...|++++|...|+++.+
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555566666666666666666666555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.00011 Score=55.57 Aligned_cols=81 Identities=9% Similarity=-0.033 Sum_probs=47.1
Q ss_pred HhhHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHH
Q 011463 261 VFTYSSLMDGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISC 340 (485)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (485)
...+..+..++.+.|++++|+..+..+++..+. ++..|..+..++...|++++|...|++..+.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334555556666666666666666666665332 55566666666666666666666666666643 3344445544444
Q ss_pred HHh
Q 011463 341 FCD 343 (485)
Q Consensus 341 ~~~ 343 (485)
..+
T Consensus 155 ~~~ 157 (169)
T d1ihga1 155 KQK 157 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.87 E-value=1.5e-05 Score=58.59 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=87.1
Q ss_pred HHhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhcc----------CChhhHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 011463 60 LVSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRV----------HRPLDAMRVFDKMKEFGCEPTPKSYITVLAI 129 (485)
Q Consensus 60 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (485)
|-+.+.+++|++.|+.+.+..|. +..++..+..++... +.+++|+..|++..+.+ |.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 45667799999999999999876 888898888887754 44578999999998875 5578889888888
Q ss_pred HHHcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCChHHHHHHHHhhhhCC
Q 011463 130 LVEENQ-----------LKLAFRFYRHMREIGIQPCVASLNVLIKALCKNSGTMDAAFKIFREMPNRG 186 (485)
Q Consensus 130 ~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 186 (485)
|...|+ +++|.+.|++..+. .|+...+...+..+ .++.+++.++.+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT-------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH-------HHHHHHHHHHHHHh
Confidence 876543 57888888888884 48777777666543 34555555555543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.81 E-value=1.3e-05 Score=65.47 Aligned_cols=53 Identities=15% Similarity=-0.035 Sum_probs=29.4
Q ss_pred HhcCCcchHHHHHHHHhhcCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHhc
Q 011463 61 VSANQFRPAEDLLDRVNKEKCDITEDIFLSICRGYGRVHRPLDAMRVFDKMKEF 114 (485)
Q Consensus 61 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 114 (485)
.+.|++++|+..+++.++..|. +...+..++..++..|++++|.+.|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555555555555544 5555555555555555555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00011 Score=49.10 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=50.8
Q ss_pred ChHHHHHHHHccCCHHHHHHHHHHhhhhhcCCC--CCC-HHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCCHHHHHH
Q 011463 14 TSAQVLQLIRAEKDVNKALVIFDSATAEYANGF--RHD-NSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDITEDIFLS 90 (485)
Q Consensus 14 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 90 (485)
.+..+...+.+.|++++|+..|++++....... .++ ..++..+..++.+.|++++|++.++++++..|. +..+++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 455677777888888888888877764322221 112 456777777777888888888888877777655 4555554
Q ss_pred H
Q 011463 91 I 91 (485)
Q Consensus 91 l 91 (485)
+
T Consensus 86 l 86 (95)
T d1tjca_ 86 L 86 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.40 E-value=0.0013 Score=48.59 Aligned_cols=95 Identities=16% Similarity=0.029 Sum_probs=60.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhhhhcCCCCC--------CHHhHHHHHHHHHhcCCcchHHHHHHHHhhcC-----CCCC-
Q 011463 19 LQLIRAEKDVNKALVIFDSATAEYANGFRH--------DNSTFSLMISKLVSANQFRPAEDLLDRVNKEK-----CDIT- 84 (485)
Q Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~- 84 (485)
+......|++++|++.|++++...+..... ....|..+..+|...|++++|.+.++..+... ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 556778899999999999998542221110 13457777778888888888887777766431 1111
Q ss_pred ----HHHHHHHHHHHhccCChhhHHHHHHHHHh
Q 011463 85 ----EDIFLSICRGYGRVHRPLDAMRVFDKMKE 113 (485)
Q Consensus 85 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 113 (485)
..++..+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12345556666666666666666666543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.39 E-value=0.0015 Score=48.10 Aligned_cols=98 Identities=9% Similarity=0.060 Sum_probs=65.5
Q ss_pred HhHHHH--HHHHHhcCCcchHHHHHHHHhhcCCCC-C----------HHHHHHHHHHHhccCChhhHHHHHHHHHhc---
Q 011463 51 STFSLM--ISKLVSANQFRPAEDLLDRVNKEKCDI-T----------EDIFLSICRGYGRVHRPLDAMRVFDKMKEF--- 114 (485)
Q Consensus 51 ~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 114 (485)
.+|..+ +..+...|++++|++.|++.+...+.. + ...|+.+..+|.+.|++++|+..+++....
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 556677889999999998887654321 1 245777788888888888888887776542
Q ss_pred --CCCCC-----HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 011463 115 --GCEPT-----PKSYITVLAILVEENQLKLAFRFYRHMRE 148 (485)
Q Consensus 115 --~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 148 (485)
...++ ..++..+..+|...|++++|.+.|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22456667777788888888888777664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.00049 Score=45.76 Aligned_cols=68 Identities=10% Similarity=-0.030 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC-hhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 409 TYSSLITCFCKKGDIHKSARIVDELVLD-----GCLPD-EGTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 409 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
.+-.++..+.+.|++++|+..|++..+. ...++ ..++..+..++.+.|++++|++.++++++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~ 80 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCH
Confidence 3446677788888888888888887654 11122 34567788888888888888888888888765444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.04 E-value=0.017 Score=40.74 Aligned_cols=113 Identities=10% Similarity=-0.010 Sum_probs=79.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHHHHHHHHhCCCccchhhHHHHHHHHHh----c
Q 011463 345 GKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQVYLSMRNRSISVDSLTYSSLITCFCK----K 420 (485)
Q Consensus 345 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 420 (485)
.++++|..+|++..+.|.... .+ .+. .....+.++|++++++..+.+ ++.....|...|.. .
T Consensus 7 kd~~~A~~~~~kaa~~g~~~a--~~--------~l~-~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~ 72 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMFG--CL--------SLV-SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVK 72 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH--HH--------HHH-TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC
T ss_pred cCHHHHHHHHHHHHHCCChhh--hh--------hhc-cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccc
Confidence 367889999999887662211 11 121 111228899999999999876 45666667777764 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCC
Q 011463 421 GDIHKSARIVDELVLDGCLPDEGTWSAVMTALWD----RRKMRQAAELLLLELMNKCV 474 (485)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 474 (485)
.+.++|.++|++..+.|. ......|...|.. ..+.++|.++++++.+.|..
T Consensus 73 ~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 578999999999998762 3334445555554 45899999999999998754
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.75 E-value=0.046 Score=38.42 Aligned_cols=82 Identities=9% Similarity=-0.085 Sum_probs=46.4
Q ss_pred CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHh----cC
Q 011463 274 GGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCK----EGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCD----IG 345 (485)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 345 (485)
..+.++|.+++++..+.| ++.....|...|.. ..+.++|..+|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345566666666665554 33344444444433 345667777777766654 34444445555543 34
Q ss_pred CHHHHHHHHHHHHHCC
Q 011463 346 KYQEAANFLDEMVLGG 361 (485)
Q Consensus 346 ~~~~a~~~~~~~~~~~ 361 (485)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777766655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.88 E-value=0.13 Score=34.64 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhc
Q 011463 306 LCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCK 385 (485)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (485)
+...|..++..+++.+.... .+..-||.++--....-+-+...++++..-+. .|.. .
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls-----------------~ 68 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD-----------------K 68 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG-----------------G
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch-----------------h
Confidence 34467777778877777663 24555666665556666666666666665331 1110 1
Q ss_pred C-ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHH
Q 011463 386 T-DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAEL 464 (485)
Q Consensus 386 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 464 (485)
+ +......-+-.+ + .+...++..++....+|+-+...++++.+.+.+ .|+......+..||.+.|...++-++
T Consensus 69 C~Nlk~vv~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nel 142 (161)
T d1wy6a1 69 CQNLKSVVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTL 142 (161)
T ss_dssp CSCTHHHHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 1 222222222111 1 156677888899999999999999999987754 78888889999999999999999999
Q ss_pred HHHHHHcCCCc
Q 011463 465 LLLELMNKCVE 475 (485)
Q Consensus 465 ~~~~~~~~~~~ 475 (485)
+.++-++|...
T Consensus 143 l~~ACe~G~Ke 153 (161)
T d1wy6a1 143 LIEACKKGEKE 153 (161)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHHhHHH
Confidence 99999998654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.55 Score=40.84 Aligned_cols=400 Identities=9% Similarity=0.000 Sum_probs=210.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhhhcCCCCCCHHhHHHHHHHHHhcCCcchHHHHHHHHhhcCCCCC-HHHHHHHHHHHh
Q 011463 18 VLQLIRAEKDVNKALVIFDSATAEYANGFRHDNSTFSLMISKLVSANQFRPAEDLLDRVNKEKCDIT-EDIFLSICRGYG 96 (485)
Q Consensus 18 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 96 (485)
.+....+.|++.++.++...+. .. | ...|...-..-...++. ...++...+.+..-.|- ...-...+..+.
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~-----dy-p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~ 83 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLK-----DY-P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELA 83 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGT-----TS-T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhc-----CC-C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 4555677889998887777765 22 2 23333332222222222 22233333333211111 122334456677
Q ss_pred ccCChhhHHHHHHHHHhcCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 011463 97 RVHRPLDAMRVFDKMKEFGCEPTPKSYITVLAILVEENQLKLAFRFYRHMREIGIQPCVASLNVLIKALCKN-------- 168 (485)
Q Consensus 97 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 168 (485)
+.+++...+..+. ..+.+...-.....+....|+.+.|...+..+-..|. .....+..+...+...
T Consensus 84 ~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~ 157 (450)
T d1qsaa1 84 RREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAY 157 (450)
T ss_dssp HTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred hccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHH
Confidence 7888766554332 1245666666777888888998888887777655442 2222333344433332
Q ss_pred ---------CCChHHHHHHHHhhhhCCCCCCHHhHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHc-
Q 011463 169 ---------SGTMDAAFKIFREMPNRGCTPDSYTYGTLINGLCRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQ- 238 (485)
Q Consensus 169 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~- 238 (485)
.|++..|..+...+... ........+.... +...+...... . ..+......+..++.+
T Consensus 158 ~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~~---~--~~~~~~~~~~~~~l~rl 225 (450)
T d1qsaa1 158 LERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQMAAVAFASV 225 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHhc---C--CCChhhhHHHHHHHHHH
Confidence 03333333333222111 1122222222221 22222222111 1 1233222333333332
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHcCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011463 239 -SKSVEEAMRLFEEMRSKGVEPNVFTYSSLM----DGLCKGGCSSQAMELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQ 313 (485)
Q Consensus 239 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (485)
..+.+.+..++....... ..+...+..+- ......+..+.+..++......+. +.......+......+++.
T Consensus 226 a~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 226 ARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHH
T ss_pred hccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChH
Confidence 357888888888876543 22332232222 233345677888888887776533 4444555566667788999
Q ss_pred HHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcccccchhhhHHHHHHHHhcCChhHHHH
Q 011463 314 EAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGGITPNRLTWSLHIRIHNTVVQGLCKTDPNRAFQ 393 (485)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 393 (485)
.+...++.+.... .......--+.+++...|+.+.|...|..... .++ |. ..+...-....+.-...
T Consensus 303 ~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fY------G~LAa~~Lg~~~~~~~~ 369 (450)
T d1qsaa1 303 GLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FY------PMVAAQRIGEEYELKID 369 (450)
T ss_dssp HHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HH------HHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hH------HHHHHHHcCCCCCCCcC
Confidence 9999998875431 22334445567889999999999999999864 232 32 12222111111100000
Q ss_pred HHHHHHhCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 011463 394 VYLSMRNRSISVDS----LTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLE 468 (485)
Q Consensus 394 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 468 (485)
.....+.. ..-..-+..+...|....|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 370 ------~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 370 ------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp ------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ------CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000000 00112355677889999999999988864 24556666777788999999999877665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.29 E-value=0.23 Score=33.45 Aligned_cols=140 Identities=18% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcCCChHHHH
Q 011463 202 CRLGKIYEAKELFKEMETKACSPTVVTYTSLINGLCQSKSVEEAMRLFEEMRSKGVEPNVFTYSSLMDGLCKGGCSSQAM 281 (485)
Q Consensus 202 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 281 (485)
.-.|..++..+++.+.... .+..-||.++--....-+-+.....++.+-+. .|. ...++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456667777777666553 24445555554444444545555555444332 111 1122222222
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011463 282 ELLQMMISKRHRPNIVTYSTLLNGLCKEGKLQEAVEILDRMKLQGLKPDAGLYGKIISCFCDIGKYQEAANFLDEMVLGG 361 (485)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 361 (485)
..+-.+ ..+...+...++.+..+|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++.+++.++-+.|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222211 1133445566677777777777777777766644 6677777777888888888888888888877776
Q ss_pred CC
Q 011463 362 IT 363 (485)
Q Consensus 362 ~~ 363 (485)
+.
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 53
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.12 Score=35.20 Aligned_cols=73 Identities=5% Similarity=-0.033 Sum_probs=52.3
Q ss_pred CccchhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCcc
Q 011463 403 ISVDSLTYSSLITCFCKKG---DIHKSARIVDELVLDGCLPDE-GTWSAVMTALWDRRKMRQAAELLLLELMNKCVEA 476 (485)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (485)
..|+..+-=....++.++. +.++++.++++..+.+ +.+. ..+-.+..+|.+.|++++|.++++++++..+...
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 3445555555666777654 5578999999988752 2233 4566678889999999999999999999765543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.48 Score=32.04 Aligned_cols=66 Identities=9% Similarity=0.037 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHhccC---ChhhHHHHHHHHHhcCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 011463 83 ITEDIFLSICRGYGRVH---RPLDAMRVFDKMKEFGCEPT-PKSYITVLAILVEENQLKLAFRFYRHMREI 149 (485)
Q Consensus 83 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 149 (485)
++..+-....-++.+.. +.++++.+++.+...+ +.+ ...+-.+.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34444444444444332 3345666666665443 222 234445555566666666666666666663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.33 E-value=0.41 Score=30.42 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHhCCCccchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011463 387 DPNRAFQVYLSMRNRSISVDSLTYSSLITCFCKKGDIHKSARIVDELVLDGCLPDEGTWSAVMT 450 (485)
Q Consensus 387 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 450 (485)
+.-+..+-+..+......|++....+.+++|.+.+++.-|+++|+-...+ +.++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34455666666677778888888899999999999999999998887755 3344556665544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.71 E-value=2.2 Score=27.04 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCc
Q 011463 422 DIHKSARIVDELVLDGCLPDEGTWSAVMTALWDRRKMRQAAELLLLELMNKCVE 475 (485)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (485)
+.=++.+-++.+...++.|+.....+.++||.+.+++.-|+++++-+..+....
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~ 74 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH 74 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 455677788888888899999999999999999999999999999888775433
|