Citrus Sinensis ID: 011526

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----

MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV

ccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHHHHHHHccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccccccccc

cccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHcccccccccccccHHHHEHEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcEEEcccccHcEEEEEHHHHHHHHcHHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHccccHHHHHcccccccccccccccccccccccccc

mlgttvliptslvpqmgggneEKAKVIQTLLFVAGLNTLLQSLfgtrlpavmggsytfvpSTISIILAgrfsnysgdpvEKFKRTMRAIQGSLIVASTLQIVLGFSGLWrnvtrflsplsvvplislvgfglyefgfpgvakcveigLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVggayndaapktqascrtdraglidaapwirvpwpfqwgapsfdAGEAFAMMMASFVALVESTGAFFAVARyasatpmppsvlsrgvgwqGVGILLSGlfgtvngtsVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKfgavfasipAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIglsvpqyfneytaingfgpvhtsgrwfndmvnvpfssepfvAGCVAFFldntlhkkdgqvrkdrgrhwwdkfwsfkgdtrseefyslpfnlnkyfpsv

mlgttvliptslvpqmgggNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDntlhkkdgqvrkdrgrhwwdkfwsfkgdtrseefyslpfnlnkyfpsv

MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFlsplsvvplislvGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKYFPSV

******LI**************KAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKY****

oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		484	2.2.26 [Sep-21-2011]
Q27GI3		532	Nucleobase-ascorbate tran	yes	no	0.997	0.907	0.859	0.0
Q8RWE9		528	Nucleobase-ascorbate tran	no	no	0.997	0.914	0.805	0.0
Q0WPE9		538	Nucleobase-ascorbate tran	no	no	0.997	0.897	0.772	0.0
Q8VZQ5		539	Nucleobase-ascorbate tran	no	no	0.995	0.894	0.693	0.0
P93039		526	Nucleobase-ascorbate tran	no	no	0.995	0.916	0.612	1e-166
Q94C70		524	Nucleobase-ascorbate tran	no	no	0.987	0.912	0.600	1e-166
Q41760		527	Nucleobase-ascorbate tran	N/A	no	0.997	0.916	0.584	1e-165
O04472		541	Putative nucleobase-ascor	no	no	0.989	0.885	0.550	1e-159
Q9SHZ3		520	Nucleobase-ascorbate tran	no	no	0.989	0.921	0.561	1e-153
Q8GZD4		551	Nucleobase-ascorbate tran	no	no	0.993	0.872	0.503	1e-134

>sp\|Q27GI3\|NAT6_ARATH Nucleobase-ascorbate transporter 6 OS=Arabidopsis thaliana GN=NAT6 PE=2 SV=2	Back alignment and function desciption

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/484 (85%), Positives = 457/484 (94%), Gaps = 1/484 (0%)

Query: 1   MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVP 60
           MLGTTVLIPT+LVPQMGGG EEKAKVIQT+LFVAG+NTLLQ+LFGTRLPAV+G SYTFVP
Sbjct: 50  MLGTTVLIPTALVPQMGGGYEEKAKVIQTILFVAGINTLLQTLFGTRLPAVVGASYTFVP 109

Query: 61  STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS 120
           +TISIIL+GRFS+ S +P+++F+R MRA QG+LIVASTLQ++LGFSGLWRNV RFLSP+S
Sbjct: 110 TTISIILSGRFSDTS-NPIDRFERIMRATQGALIVASTLQMILGFSGLWRNVVRFLSPIS 168

Query: 121 VVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFS 180
            VPL+ LVGFGLYEFGFPGVAKC+EIGLP+L+I+VF+SQYLPHVIK GKN+FDRFAVIF+
Sbjct: 169 AVPLVGLVGFGLYEFGFPGVAKCIEIGLPELLILVFVSQYLPHVIKSGKNVFDRFAVIFA 228

Query: 181 VVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEA 240
           VVIVWIYAHLLTVGGAYN AAP TQ SCRTDRAG+I AAPWIRVPWPFQWGAPSFDAGEA
Sbjct: 229 VVIVWIYAHLLTVGGAYNGAAPTTQTSCRTDRAGIIGAAPWIRVPWPFQWGAPSFDAGEA 288

Query: 241 FAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 300
           FAMMMASFVALVESTGAF AV+RYASAT +PPS+LSRG+GWQGV IL+SGLFGT  G+SV
Sbjct: 289 FAMMMASFVALVESTGAFVAVSRYASATMLPPSILSRGIGWQGVAILISGLFGTGAGSSV 348

Query: 301 SVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGA 360
           SVENAGLLALTRVGSRRVVQI+AGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVGA
Sbjct: 349 SVENAGLLALTRVGSRRVVQIAAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGA 408

Query: 361 GGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVP 420
           GGLSFLQFCNLNSFR KFILGFS+F+GLS+PQYFNEYTAI G+GPVHT  RWFNDMVNVP
Sbjct: 409 GGLSFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVP 468

Query: 421 FSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKY 480
           FSSEPFVAG VAFFLDNTLHKKD  +RKDRG+HWWDKF SFKGDTRSEEFYSLPFNLNKY
Sbjct: 469 FSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKY 528

Query: 481 FPSV 484
           FPSV
Sbjct: 529 FPSV 532

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8RWE9\|NAT5_ARATH Nucleobase-ascorbate transporter 5 OS=Arabidopsis thaliana GN=NAT5 PE=2 SV=1	Back alignment and function description

>sp\|Q0WPE9\|NAT7_ARATH Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2	Back alignment and function description

>sp\|Q8VZQ5\|NAT8_ARATH Nucleobase-ascorbate transporter 8 OS=Arabidopsis thaliana GN=NAT8 PE=2 SV=1	Back alignment and function description

>sp\|P93039\|NAT4_ARATH Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2	Back alignment and function description

>sp\|Q94C70\|NAT2_ARATH Nucleobase-ascorbate transporter 2 OS=Arabidopsis thaliana GN=NAT2 PE=2 SV=2	Back alignment and function description

>sp\|Q41760\|LPE1_MAIZE Nucleobase-ascorbate transporter LPE1 OS=Zea mays GN=LPE1 PE=1 SV=2	Back alignment and function description

>sp\|O04472\|NAT10_ARATH Putative nucleobase-ascorbate transporter 10 OS=Arabidopsis thaliana GN=NAT10 PE=3 SV=2	Back alignment and function description

>sp\|Q9SHZ3\|NAT1_ARATH Nucleobase-ascorbate transporter 1 OS=Arabidopsis thaliana GN=NAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GZD4\|NAT3_ARATH Nucleobase-ascorbate transporter 3 OS=Arabidopsis thaliana GN=NAT3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		484
255540763		531	purine permease, putative [Ricinus commu	0.997	0.909	0.886	0.0
224121656		529	nucleobase ascorbate transporter [Populu	0.997	0.913	0.882	0.0
225457114		531	PREDICTED: nucleobase-ascorbate transpor	0.997	0.909	0.876	0.0
224135763		528	nucleobase ascorbate transporter [Populu	0.997	0.914	0.871	0.0
449440700		530	PREDICTED: nucleobase-ascorbate transpor	0.997	0.911	0.869	0.0
356516694		531	PREDICTED: nucleobase-ascorbate transpor	0.997	0.909	0.857	0.0
356508649		531	PREDICTED: nucleobase-ascorbate transpor	0.997	0.909	0.859	0.0
15241994		532	nucleobase-ascorbate transporter 6 [Arab	0.997	0.907	0.859	0.0
297793879		532	hypothetical protein ARALYDRAFT_496474 [	0.997	0.907	0.857	0.0
356562759		533	PREDICTED: nucleobase-ascorbate transpor	0.997	0.906	0.836	0.0

>gi\|255540763\|ref\|XP_002511446.1\| purine permease, putative [Ricinus communis] gi\|223550561\|gb\|EEF52048.1\| purine permease, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/484 (88%), Positives = 463/484 (95%), Gaps = 1/484 (0%)

Query: 1   MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVP 60
           MLGTTVLIPT+LVPQMGGGN+EKA+VIQTLLFVAGLNTLLQSLFGTRLPAV+GGSYTFVP
Sbjct: 49  MLGTTVLIPTALVPQMGGGNKEKAQVIQTLLFVAGLNTLLQSLFGTRLPAVIGGSYTFVP 108

Query: 61  STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS 120
           +TISIILAGRFS+ + DP E+FK  MRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS
Sbjct: 109 TTISIILAGRFSDAT-DPEERFKSIMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS 167

Query: 121 VVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFS 180
            VPL++LVGFGLYE GFPGVAKCVEIGLP+L+I+VF+SQY+PHVIK  +++FDRFAVIFS
Sbjct: 168 AVPLVALVGFGLYELGFPGVAKCVEIGLPELIILVFVSQYMPHVIKSRRHVFDRFAVIFS 227

Query: 181 VVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEA 240
           +VIVWIYAHLLTVGGAYNDAAPKTQ +CRTDRAGLIDAAPWIRVP+PFQWGAPSFDAGEA
Sbjct: 228 IVIVWIYAHLLTVGGAYNDAAPKTQNTCRTDRAGLIDAAPWIRVPYPFQWGAPSFDAGEA 287

Query: 241 FAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 300
           FAMMMASFVALVESTGAF AV+RYASATPMPPSVLSRG+GWQGV ILLSGLFGTVN +SV
Sbjct: 288 FAMMMASFVALVESTGAFIAVSRYASATPMPPSVLSRGIGWQGVAILLSGLFGTVNASSV 347

Query: 301 SVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGA 360
           SVENAGLLALTRVGSRRVVQISAGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVG 
Sbjct: 348 SVENAGLLALTRVGSRRVVQISAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGV 407

Query: 361 GGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVP 420
           GGLSFLQFCNLNSFR KFILGFSIF+GLS+PQYFNEYTAING+GPVHT GRWFND+VNVP
Sbjct: 408 GGLSFLQFCNLNSFRTKFILGFSIFLGLSIPQYFNEYTAINGYGPVHTGGRWFNDIVNVP 467

Query: 421 FSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKY 480
           FSSE FVAGCVA+FLDNTLH+KD  +RKDRG+HWWDKF SFKGD RSEEFYSLPFNLNKY
Sbjct: 468 FSSEAFVAGCVAYFLDNTLHRKDSSIRKDRGKHWWDKFRSFKGDIRSEEFYSLPFNLNKY 527

Query: 481 FPSV 484
           FPSV
Sbjct: 528 FPSV 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224121656\|ref\|XP_002318639.1\| nucleobase ascorbate transporter [Populus trichocarpa] gi\|222859312\|gb\|EEE96859.1\| nucleobase ascorbate transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225457114\|ref\|XP_002283469.1\| PREDICTED: nucleobase-ascorbate transporter 6 [Vitis vinifera] gi\|297733828\|emb\|CBI15075.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224135763\|ref\|XP_002322154.1\| nucleobase ascorbate transporter [Populus trichocarpa] gi\|222869150\|gb\|EEF06281.1\| nucleobase ascorbate transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449440700\|ref\|XP_004138122.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Cucumis sativus] gi\|449477394\|ref\|XP_004155010.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356516694\|ref\|XP_003527028.1\| PREDICTED: nucleobase-ascorbate transporter 6-like isoform 1 [Glycine max] gi\|356516696\|ref\|XP_003527029.1\| PREDICTED: nucleobase-ascorbate transporter 6-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356508649\|ref\|XP_003523067.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max]	Back alignment and taxonomy information

>gi|15241994|ref|NP_201094.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|79600443|ref|NP_851251.2| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|145323680|ref|NP_001032127.2| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|122064607|sp|Q27GI3.2|NAT6_ARATH RecName: Full=Nucleobase-ascorbate transporter 6; Short=AtNAT6 gi|21326025|gb|AAM47573.1|AF466198_1 putative permease 1 [Arabidopsis thaliana] gi|10177467|dbj|BAB10858.1| permease 1 [Arabidopsis thaliana] gi|332010285|gb|AED97668.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|332010286|gb|AED97669.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana] gi|332010287|gb|AED97670.1| nucleobase-ascorbate transporter 6 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297793879\|ref\|XP_002864824.1\| hypothetical protein ARALYDRAFT_496474 [Arabidopsis lyrata subsp. lyrata] gi\|297310659\|gb\|EFH41083.1\| hypothetical protein ARALYDRAFT_496474 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356562759\|ref\|XP_003549636.1\| PREDICTED: nucleobase-ascorbate transporter 6-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		484
TAIR\|locus:2170783		532	AT5G62890 [Arabidopsis thalian	0.997	0.907	0.840	4e-225
TAIR\|locus:2158829		528	AT5G49990 [Arabidopsis thalian	0.997	0.914	0.787	1.5e-211
TAIR\|locus:2202700		538	NAT7 "nucleobase-ascorbate tra	0.997	0.897	0.754	1.9e-202
TAIR\|locus:2194631		539	NAT8 "nucleobase-ascorbate tra	0.995	0.894	0.676	1.1e-181
TAIR\|locus:2031085		526	AT1G49960 [Arabidopsis thalian	0.995	0.916	0.596	3e-156
TAIR\|locus:2040874		524	AT2G34190 [Arabidopsis thalian	0.987	0.912	0.588	1.6e-150
TAIR\|locus:2034104		541	AT1G65550 [Arabidopsis thalian	0.989	0.885	0.537	3.7e-142
TAIR\|locus:2060076		520	AT2G05760 [Arabidopsis thalian	0.989	0.921	0.548	2.7e-139
TAIR\|locus:2066190		551	PDE135 "pigment defective embr	0.993	0.872	0.488	6.1e-126
TAIR\|locus:2145507		419	AT5G25420 [Arabidopsis thalian	0.206	0.238	0.676	3.8e-92

TAIR\|locus:2170783 AT5G62890 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2173 (770.0 bits), Expect = 4.0e-225, P = 4.0e-225
 Identities = 407/484 (84%), Positives = 446/484 (92%)

Query:     1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVP 60
             MLGTTVLIPT+LVPQMGGG EEKAKVIQT+LFVAG+NTLLQ+LFGTRLPAV+G SYTFVP
Sbjct:    50 MLGTTVLIPTALVPQMGGGYEEKAKVIQTILFVAGINTLLQTLFGTRLPAVVGASYTFVP 109

Query:    61 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFXXXXX 120
             +TISIIL+GRFS+ S +P+++F+R MRA QG+LIVASTLQ++LGFSGLWRNV RF     
Sbjct:   110 TTISIILSGRFSDTS-NPIDRFERIMRATQGALIVASTLQMILGFSGLWRNVVRFLSPIS 168

Query:   121 XXXXXXXXGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFS 180
                     GFGLYEFGFPGVAKC+EIGLP+L+I+VF+SQYLPHVIK GKN+FDRFAVIF+
Sbjct:   169 AVPLVGLVGFGLYEFGFPGVAKCIEIGLPELLILVFVSQYLPHVIKSGKNVFDRFAVIFA 228

Query:   181 VVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEA 240
             VVIVWIYAHLLTVGGAYN AAP TQ SCRTDRAG+I AAPWIRVPWPFQWGAPSFDAGEA
Sbjct:   229 VVIVWIYAHLLTVGGAYNGAAPTTQTSCRTDRAGIIGAAPWIRVPWPFQWGAPSFDAGEA 288

Query:   241 FAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSV 300
             FAMMMASFVALVESTGAF AV+RYASAT +PPS+LSRG+GWQGV IL+SGLFGT  G+SV
Sbjct:   289 FAMMMASFVALVESTGAFVAVSRYASATMLPPSILSRGIGWQGVAILISGLFGTGAGSSV 348

Query:   301 SVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGA 360
             SVENAGLLALTRVGSRRVVQI+AGFMIFFS+LGKFGAVFASIPAPI+AALYCLFFAYVGA
Sbjct:   349 SVENAGLLALTRVGSRRVVQIAAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGA 408

Query:   361 GGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVP 420
             GGLSFLQFCNLNSFR KFILGFS+F+GLS+PQYFNEYTAI G+GPVHT  RWFNDMVNVP
Sbjct:   409 GGLSFLQFCNLNSFRTKFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVP 468

Query:   421 FSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYSLPFNLNKY 480
             FSSEPFVAG VAFFLDNTLHKKD  +RKDRG+HWWDKF SFKGDTRSEEFYSLPFNLNKY
Sbjct:   469 FSSEPFVAGSVAFFLDNTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKY 528

Query:   481 FPSV 484
             FPSV
Sbjct:   529 FPSV 532

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR\|locus:2158829 AT5G49990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202700 NAT7 "nucleobase-ascorbate transporter 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2194631 NAT8 "nucleobase-ascorbate transporter 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2031085 AT1G49960 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040874 AT2G34190 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2034104 AT1G65550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060076 AT2G05760 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2066190 PDE135 "pigment defective embryo 135" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145507 AT5G25420 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41760	LPE1_MAIZE	No assigned EC number	0.5847	0.9979	0.9165	N/A	no
Q8RWE9	NAT5_ARATH	No assigned EC number	0.8057	0.9979	0.9147	no	no
Q27GI3	NAT6_ARATH	No assigned EC number	0.8595	0.9979	0.9078	yes	no
Q0WPE9	NAT7_ARATH	No assigned EC number	0.7727	0.9979	0.8977	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		484
pfam00860		389	pfam00860, Xan_ur_permease, Permease family	1e-50
COG2233		451	COG2233, UraA, Xanthine/uracil permeases [Nucleoti	3e-42
TIGR03173		406	TIGR03173, pbuX, xanthine permease	4e-41
TIGR00801		412	TIGR00801, ncs2, uracil-xanthine permease	2e-29
PRK10720		428	PRK10720, PRK10720, uracil transporter; Provisiona	6e-12
PRK11412		433	PRK11412, PRK11412, putative uracil/xanthine trans	3e-08
TIGR03616		429	TIGR03616, RutG, pyrimidine utilization transport	6e-07

>gnl\|CDD\|216158 pfam00860, Xan_ur_permease, Permease family	Back alignment and domain information

 Score =  176 bits (449), Expect = 1e-50
 Identities = 111/402 (27%), Positives = 190/402 (47%), Gaps = 36/402 (8%)

Query: 1   MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFV 59
           M   T+++P  +   +G G E+ A++I      +G+ TLLQ+L FG RLP  +G S+ FV
Sbjct: 14  MFAATIVVPLLVGDALGLGAEDLAQLISATFLASGIGTLLQTLIFGIRLPIYLGSSFAFV 73

Query: 60  PSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPL 119
            +   I + G                +  + G+++VA  L  ++ F+GL   + R   P+
Sbjct: 74  TAL-MIAIGGADWGI----------ALAGLFGAVLVAGVLFTLISFTGLRGRLARLFPPV 122

Query: 120 SVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVF---ISQYLPHVI----KRGKNIF 172
              P++ L+G  L      G      I     V ++    ++  +  VI       K  F
Sbjct: 123 VTGPVVLLIGLSLAPIAVKGAGGGWAIADGLTVGLLDLLGLAVVVLAVILLLSVFLKGFF 182

Query: 173 DRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGA 232
            +  ++  ++  W+ A  + +                 + +  +  APW ++P PF +G 
Sbjct: 183 RQGPILIGIIAGWLLALFMGI----------------VNFSPEVMDAPWFQLPHPFPFGT 226

Query: 233 PSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLF 292
           P F+ G    ++  + VA+VESTG   AVA+ +     P   L RG+   G+  LLSGLF
Sbjct: 227 PLFNPGLILTVLAVALVAIVESTGDIRAVAKVSGRDLKPKPDLRRGLLADGLATLLSGLF 286

Query: 293 GTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYC 352
           G    T+   EN G++ALT+V SRRV   +   +I   ++ KF A+F+SIP+P++  +  
Sbjct: 287 GAF-PTTTYAENIGVVALTKVYSRRVGVTAGVILILLGLIPKFAALFSSIPSPVLGGVML 345

Query: 353 LFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQYF 394
           + F  +   G+S L   +L+S R   I+  S+ +GL +    
Sbjct: 346 VMFGMIAGSGVSNLITVDLDSARNLLIIAVSLVLGLGISTVP 387

This family includes permeases for diverse substrates such as xanthine, uracil, and vitamin C. However many members of this family are functionally uncharacterized and may transport other substrates. Members of this family have ten predicted transmembrane helices. Length = 389

>gnl\|CDD\|225142 COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|234136 TIGR03173, pbuX, xanthine permease	Back alignment and domain information

>gnl\|CDD\|233133 TIGR00801, ncs2, uracil-xanthine permease	Back alignment and domain information

>gnl\|CDD\|236744 PRK10720, PRK10720, uracil transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|183124 PRK11412, PRK11412, putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>gnl\|CDD\|132655 TIGR03616, RutG, pyrimidine utilization transport protein G	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		484
KOG1292		510	consensus Xanthine/uracil transporters [Nucleotide	100.0
COG2233		451	UraA Xanthine/uracil permeases [Nucleotide transpo	100.0
PRK11412		433	putative uracil/xanthine transporter; Provisional	100.0
TIGR03173		406	pbuX xanthine permease. All the seed members of th	100.0
TIGR00801		415	ncs2 uracil-xanthine permease. NCS2 family appears	100.0
PRK10720		428	uracil transporter; Provisional	100.0
TIGR03616		429	RutG pyrimidine utilization transport protein G. T	100.0
PF00860		389	Xan_ur_permease: Permease family; InterPro: IPR006	100.0
COG2252		436	Xanthine/uracil/vitamin C permease [Nucleotide tra	99.97
COG0659		554	SUL1 Sulfate permease and related transporters (MF	99.89
TIGR00843		395	benE benzoate transporter. The benzoate transporte	99.88
PRK11660		568	putative transporter; Provisional	99.82
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	99.81
PF03594		378	BenE: Benzoate membrane transport protein; InterPr	99.69
PF00916		280	Sulfate_transp: Sulfate transporter family; InterP	99.59
COG3135		402	BenE Uncharacterized protein involved in benzoate	99.57
KOG0236		665	consensus Sulfate/bicarbonate/oxalate exchanger SA	99.44
TIGR00834		900	ae anion exchange protein. They preferentially cat	98.42
KOG1172		876	consensus Na+-independent Cl/HCO3 exchanger AE1 an	98.35
PF11840		492	DUF3360: Protein of unknown function (DUF3360); In	97.6
PF00955		510	HCO3_cotransp: HCO3- transporter family Only parti	96.48
COG0659		554	SUL1 Sulfate permease and related transporters (MF	83.32
TIGR00815		563	sulP high affinity sulphate transporter 1. (2) SO4	80.45

>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.1e-90  Score=705.12  Aligned_cols=476  Identities=59%  Similarity=1.075  Sum_probs=450.2

Q ss_pred             CccceehHHHHhhhhcCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCCcceEeccccchHHHHHHHHhhcccCCCC---C
Q 011526            1 MLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYS---G   76 (484)
Q Consensus         1 m~~~~i~vPlii~~a~gl~~~~~-~~li~~tl~~sGi~Tllq~~~G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~---~   76 (484)
                      |+++++++|.+++++++.+++|. +++||++++++||.|++|++||.|||++||+||+|++|+.++.....+.|..   +
T Consensus        25 ~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~  104 (510)
T KOG1292|consen   25 CLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHE  104 (510)
T ss_pred             HhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCccc
Confidence            68999999999999999999999 9999999999999999999999999999999999999999998866666643   2


Q ss_pred             CCchhhhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCcccHHHHHHHHHHHhhhhhcCCccchhhhHHHHHHHHHH
Q 011526           77 DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVF  156 (484)
Q Consensus        77 ~~~~~~~~~~~~~~ga~~vaGlv~illg~~~~~~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~~~~~v~~~~l~~~i~  156 (484)
                      ++++.|++.+++++|++++++++++++|++|+.+++.|++.|+.+.+++.++|++++..+.+.++.+|.+++..+++.++
T Consensus       105 ~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~~~~~~~~weI~l~~~llli~  184 (510)
T KOG1292|consen  105 TDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDGFPKLGKHWEISLPEILLLIL  184 (510)
T ss_pred             chhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhhhhhhhhheeecHHHHHHHHH
Confidence            23346999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh--hcccc--ccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCccccccccccC
Q 011526          157 ISQY--LPHVI--KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGA  232 (484)
Q Consensus       157 l~~~--~~~~~--~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P~~~~~g~  232 (484)
                      +++|  .++..  ..+++.++++++++++.+.|++|.++..+|.+|.+++.++.++|+|.+..++++||+.+|+|++||.
T Consensus       185 fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~RTD~~~vi~~apWi~vPyP~QwG~  264 (510)
T KOG1292|consen  185 FSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSCRTDRNGVISSAPWIRVPYPFQWGP  264 (510)
T ss_pred             HHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcccccHhhhhccCCceeecCCCccCC
Confidence            9999  53322  2347789999999999999999999999999999888899999999988889999999999999999


Q ss_pred             cccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccchheehhcc
Q 011526          233 PSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTR  312 (484)
Q Consensus       233 p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~g~i~~Tg  312 (484)
                      |.||++....|+...++.++||+|++.+++|.+..++++++.+|||+..||++++++|++|+..++|.++||+|+++.||
T Consensus       265 P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGig~lL~gl~G~gtG~Tt~~ENigll~vTK  344 (510)
T KOG1292|consen  265 PTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGIGSLLAGLFGTGTGSTTSVENIGLLGVTK  344 (510)
T ss_pred             CcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhHHHHHHHhhCCCccceeeccceeeEeeee
Confidence            99999999999999999999999999999999998888899999999999999999999999998888889999999999


Q ss_pred             CCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhhhhcccCCCcceeehhhHHHHhcchhh
Q 011526          313 VGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFLQFCNLNSFRVKFILGFSIFIGLSVPQ  392 (484)
Q Consensus       313 v~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l~~v~~~~~rn~~ivg~sl~~Gl~~p~  392 (484)
                      ++||++++++|.+|++++++.||+|++++||.|++||+++++|+++...|+++++.+|+++.||++|+|+|+++|+.+|+
T Consensus       345 VgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~  424 (510)
T KOG1292|consen  345 VGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQ  424 (510)
T ss_pred             eeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCcCccchhcccccccccccccCCCCCCCcccC
Q 011526          393 YFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQVRKDRGRHWWDKFWSFKGDTRSEEFYS  472 (484)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~  472 (484)
                      ||+++     .+|.||+.+|++++++.++++.+.+|+++|++||+++|+   ++|||||+++|+|.++.+.|.+.+++|+
T Consensus       425 yF~~~-----~~~v~Tg~~~~d~ilnvll~~~m~Vggi~A~~LDnt~~g---atr~~RG~~~w~~~~~~~~d~~~~e~Y~  496 (510)
T KOG1292|consen  425 YFEQY-----PGPVHTGNGWFDDILNVLLSSRMLVGGILAFILDNTLPG---ATREQRGLRWWDKFETFNGDVRNEEFYS  496 (510)
T ss_pred             HHHhC-----CCccccCcHHHHHHHHHHhhHHHHHHHHHhhhccccCCC---CChHhcCCcchhccccccCCcccccccc
Confidence            99996     567999999999999999999999999999999999995   2799999999999999999999999999


Q ss_pred             CCcccccCCCCC
Q 011526          473 LPFNLNKYFPSV  484 (484)
Q Consensus       473 ~p~~~~~~~~~~  484 (484)
                      ||+++||+||+.
T Consensus       497 lP~~~n~~f~~~  508 (510)
T KOG1292|consen  497 LPFNLNRFFPRI  508 (510)
T ss_pred             CcHHHHhhcccC
Confidence            999999999974

>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK11412 putative uracil/xanthine transporter; Provisional	Back alignment and domain information

>TIGR03173 pbuX xanthine permease	Back alignment and domain information

>TIGR00801 ncs2 uracil-xanthine permease	Back alignment and domain information

>PRK10720 uracil transporter; Provisional	Back alignment and domain information

>TIGR03616 RutG pyrimidine utilization transport protein G	Back alignment and domain information

>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []	Back alignment and domain information

>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00843 benE benzoate transporter	Back alignment and domain information

>PRK11660 putative transporter; Provisional	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]	Back alignment and domain information

>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related	Back alignment and domain information

>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00834 ae anion exchange protein	Back alignment and domain information

>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells	Back alignment and domain information

>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00815 sulP high affinity sulphate transporter 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		484
3qe7_A		429	Crystal Structure Of Uracil Transporter--Uraa Lengt		5e-10

>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa Length = 429

Back alignment and structure

Iteration: 1

Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 214 GLIDAAPWIRVPW---PFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPM 270 G++D P I W P + P F+ ++ A+ V + E G A + Sbjct: 200 GIVDTTPIINAHWFALPTLY-TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLL 258 Query: 271 PPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFS 330 L R + G+ ++SG FG+ T+ EN G++A+TRV S V+ +A F I S Sbjct: 259 RDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLS 317 Query: 331 VLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL 366 +GK A IP P++ + L + +GA G+ L Sbjct: 318 CVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVL 353 Database: pdbaa

PyMOL of 3qe7

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		484
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	2e-35

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli} Length = 429	Back alignment and structure

 Score =  135 bits (342), Expect = 2e-35
 Identities = 82/412 (19%), Positives = 149/412 (36%), Gaps = 82/412 (19%)

Query: 1   MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFV 59
           M G TVL     VP +   N        T+L   G+ TLL       ++PA +G S+ F+
Sbjct: 28  MFGATVL-----VPVLFHIN------PATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFI 76

Query: 60  PSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF---SGLWRNVTRFL 116
              + ++  G                     G  I+   L  ++ F         +    
Sbjct: 77  SPVLLLLPLG----------------YEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLF 120

Query: 117 SPLSVVPLISLVGFGL-----------YEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVI 165
            P ++  +++++G  L              G    +K + I +  L + V  S       
Sbjct: 121 PPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVL----- 175

Query: 166 KRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLID-----AAP 220
              +       ++  V++ +  +  +                      G++D      A 
Sbjct: 176 --FRGFLAIIPILIGVLVGYALSFAM----------------------GIVDTTPIINAH 211

Query: 221 WIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVG 280
           W  +P  +    P F+      ++ A+ V + E  G     A       +    L R + 
Sbjct: 212 WFALPTLY---TPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMF 268

Query: 281 WQGVGILLSGLFGTVNGTSVSVENAGLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFA 340
             G+  ++SG FG+   T+   EN G++A+TRV S  V+  +A F I  S +GK  A   
Sbjct: 269 ANGLSTVISGFFGSTPNTTYG-ENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQ 327

Query: 341 SIPAPIVAALYCLFFAYVGAGGLSFLQF--CNLNSFRVKFILGFSIFIGLSV 390
            IP P++  +  L +  +GA G+  L     + N  +   +    + IG+S 
Sbjct: 328 MIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSG 379

PyMOL of 3qe7

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		484
3qe7_A		429	Uracil permease; uracil transporter, URAA, transpo	100.0

>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}	Back alignment and structure

Probab=100.00  E-value=8.1e-65  Score=532.98  Aligned_cols=369  Identities=22%  Similarity=0.365  Sum_probs=326.7

Q ss_pred             CccceehHHHHhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCCcceEeccccchHHHHHHHHhhcccCCCCCCCc
Q 011526            1 MLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPV   79 (484)
Q Consensus         1 m~~~~i~vPlii~~a~gl~~~~~~~li~~tl~~sGi~Tllq~~~-G~rlPiv~G~sf~~i~~~~~i~~~~g~~~~~~~~~   79 (484)
                      |+++++++|+++    |+|++       +++++||++|++|+++ |+|+|+++|+||+|++++..+.+ +          
T Consensus        28 m~~~~v~~Plil----Gl~~~-------~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~----------   85 (429)
T 3qe7_A           28 MFGATVLVPVLF----HINPA-------TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-L----------   85 (429)
T ss_dssp             HHHHHHHHHHTT----TSCHH-------HHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-G----------
T ss_pred             HHHHHHHhHHHh----CCCHH-------HHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-c----------
Confidence            678999999997    88873       8999999999999986 89999999999999999877753 2          


Q ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHhh--hhH-HHHHHhcCcccHHHHHHHHHHHhhhhhcCCcc-----------chhh
Q 011526           80 EKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------KCVE  145 (484)
Q Consensus        80 ~~~~~~~~~~~ga~~vaGlv~illg~~--~~~-~~l~~~fpp~V~G~~i~lIGl~l~~~~~~~~~-----------~~~~  145 (484)
                           +|++++|+++++|+++++++++  +++ +|++|+|||+|+|+++++||+++++.++++.+           .++.
T Consensus        86 -----g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (429)
T 3qe7_A           86 -----GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII  160 (429)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHH
Confidence                 6899999999999999999987  554 79999999999999999999999988765422           2567


Q ss_pred             hHHHHHHHHHHHHHhhccccccCccccchhhHHHHHHHHHHHHHHHhhcCCCCCCCccCccccccCcCCcCCCCCCcccc
Q 011526          146 IGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVP  225 (484)
Q Consensus       146 v~~~~l~~~i~l~~~~~~~~~~~~~~~r~~aiLigiv~G~~~a~~~g~~~~~~~~~~~~~~~~~vd~~~~v~~~pwf~~P  225 (484)
                      +++.+++++++++++.|       +++|++++|+|+++||++++.+|.                +|+++ +.++||+++|
T Consensus       161 la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~----------------~d~~~-v~~a~~~~lP  216 (429)
T 3qe7_A          161 ISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI----------------VDTTP-IINAHWFALP  216 (429)
T ss_dssp             HHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH----------------TTSSH-HHHSCSSCCC
T ss_pred             HHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC----------------CCccc-cccccccccc
Confidence            88888888888876654       467899999999999999999985                35543 5678999999


Q ss_pred             ccccccCcccchhHHHHHHHHHHHHHHHhHhHHHHHHHHhcCCCCCCccCccceehhhhHHHHhhhcCCCCCccccccch
Q 011526          226 WPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQGVGILLSGLFGTVNGTSVSVENA  305 (484)
Q Consensus       226 ~~~~~g~p~f~~~~i~~~~~~~lv~~~es~g~~~av~~~~~~~~~~~~~~~r~~~adGl~~ilagl~G~~~~tt~ss~n~  305 (484)
                      .   |+.|+||++.+..++++++++++|++|++.++++..+++..+++++||++.+||++|+++|+||++|.|+|+ ||+
T Consensus       217 ~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~-en~  292 (429)
T 3qe7_A          217 T---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYG-ENI  292 (429)
T ss_dssp             C---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECH-HHH
T ss_pred             C---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHH-HhH
Confidence            5   577899999999999999999999999999999998765546789999999999999999999999999999 999


Q ss_pred             heehhccCCccchHHHHHHHHHHHHHhhHHHHHHhhCChhHHHHHHHHHHHHHHhhhhhhh--hhcccCCCcceeehhhH
Q 011526          306 GLLALTRVGSRRVVQISAGFMIFFSVLGKFGAVFASIPAPIVAALYCLFFAYVGAGGLSFL--QFCNLNSFRVKFILGFS  383 (484)
Q Consensus       306 g~i~~Tgv~SR~~~~~a~~~lill~~~Pk~~al~~~IP~~V~gg~li~~fg~i~~~Gi~~l--~~v~~~~~rn~~ivg~s  383 (484)
                      |+++.||++||++...+|+++++++++||+++++++||.||+||+++++||++..+|+|.+  +++|++++||.+|++++
T Consensus       293 g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~  372 (429)
T 3qe7_A          293 GVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVI  372 (429)
T ss_dssp             HHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHH
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999988999999999


Q ss_pred             HHHhcchhhhhhhhhhhcCCCCcccccccccccccccccccchhHHHHHHHhhhccCCcCccc
Q 011526          384 IFIGLSVPQYFNEYTAINGFGPVHTSGRWFNDMVNVPFSSEPFVAGCVAFFLDNTLHKKDGQV  446 (484)
Q Consensus       384 l~~Gl~~p~~~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~gi~~g~l~aiiLn~~~~~~~~~~  446 (484)
                      +.+|++...                    +|  ++.+..||+++|+++|++||+++|++++++
T Consensus       373 l~~G~g~~~--------------------~~--~~~~~~~gi~~~~~~ai~ln~~l~~~~~~~  413 (429)
T 3qe7_A          373 LIIGVSGAK--------------------VN--IGAAELKGMALATIVGIGLSLIFKLISVLR  413 (429)
T ss_dssp             HHHHHHCCC--------------------CC--SSSCCCCHHHHHHHHHHHHHHHHTCCC---
T ss_pred             HHHHHHHHH--------------------Hh--hhhhccCcHHHHHHHHHHHHHHhcCccccC
Confidence            999997421                    12  346778999999999999999999874333

PyMOL of 3qe7

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00