Citrus Sinensis ID: 011527

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccEEEEEEEcccccccccccccHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccEEEEEEcccccccccccccHHHHHHHHccccccccEEEEcHHHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHccccEEEEEcccHHcccEEEEEEcccccEEEEcccccc
cccccHHHHHccccHHHHccccccccccHHHHHHHcccccccHHHHcccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccEEccccEccHHHHHccccHHHHHEHEEEccccccEEEEcccccHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccHHcccHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEcccHEcccHccccEEEEEEEccccEEEEEcccccccHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHcccEEEEEEcHHHHHcccEEEEEcccccEEEEEHHHcc
mpaihsslsfymkplflsnsslfprkftvpkeyllnprslcalssasnqnggrsgarslspspvsddlqkidvnppkgtrdfppedmrLRNWLFHNFQEVsrlfgfeevdfpvleSEALFIRKAGEEIRDQLYCFEdrgnrrvalrpeltPSLARLVIQkgksvslplkwfavGQCWryermtrgrrrehYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRchsipehlfgkVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEkfgysdwiqfDASVVRGLAYYTGIVFecfdrdgklraicgggrydqllstfggddipacgfgfGDAVILELLKekgllpplnhqVENIVCALDHNLQGAASMVATTLrgkgqsvdlvleskplkWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
mpaihsslsfyMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSasnqnggrsgarslspspvsddlqkidvnppkgtrdfppEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIqkgksvslplkwfavgqCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRChsipehlfgkVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQrlilvgttewqkgmvgvkilssgeqyeikldele
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWryermtrgrrrEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVIlellkekgllpplNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
*******LSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLC**********************************************RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSG***********
**********YMKPLFLSN*S*******************************************************KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLD*L*
MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSS*********************DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
*****SSLSFYMKPLFLSNSSLFPRKFTV*KE*L********************************DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPAIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query484 2.2.26 [Sep-21-2011]
B1ZUW6437 Histidine--tRNA ligase OS yes no 0.838 0.929 0.364 1e-68
Q9HLX5426 Histidine--tRNA ligase OS yes no 0.840 0.955 0.349 6e-68
Q5UXW4435 Histidine--tRNA ligase OS yes no 0.822 0.914 0.346 4e-67
Q97CE6426 Histidine--tRNA ligase OS yes no 0.826 0.938 0.357 3e-65
B0SQQ4437 Histidine--tRNA ligase OS yes no 0.845 0.935 0.355 4e-65
B0SH39437 Histidine--tRNA ligase OS yes no 0.845 0.935 0.355 4e-65
Q3IMP5432 Histidine--tRNA ligase OS yes no 0.830 0.930 0.341 2e-63
Q04X87439 Histidine--tRNA ligase OS yes no 0.828 0.913 0.339 2e-63
Q04WC4439 Histidine--tRNA ligase OS yes no 0.828 0.913 0.339 2e-63
Q8U431432 Histidine--tRNA ligase OS yes no 0.832 0.932 0.342 3e-63
>sp|B1ZUW6|SYH_OPITP Histidine--tRNA ligase OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=hisS PE=3 SV=1 Back     alignment and function desciption
 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 228/420 (54%), Gaps = 14/420 (3%)

Query: 78  GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED 137
           G R+F P+ +  RN +F  +++ +  FGF E D PVLE   L+  K+G+EI  QL+ F D
Sbjct: 9   GFREFYPDALARRNHIFRLWRQTAVAFGFAEYDAPVLEPLELYKTKSGDEIEAQLFSFTD 68

Query: 138 RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDI 197
           +G R VALRPE+TP++ R+V  K  ++  P+KWF++ + +RYER  +GR R  +Q+N D+
Sbjct: 69  KGGREVALRPEMTPTVCRMVGAKANALKRPIKWFSIAEYYRYERAQKGRERAFFQFNADL 128

Query: 198 IGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCII 257
              P   AE ELI+ +    K  G+T  D   R+S R +    L    + E     V   
Sbjct: 129 FAEPGPEAEIELIALLTQCLKAFGLTEQDFYIRLSDRNLWFFYLEALGLDEPRIRAVLSA 188

Query: 258 IDKIEKLPLDVIKNDLKSAGMSEAAIEE-LLRVLSIKSLTELE-------GEAVA----D 305
           +DK EK+  D  K   +  G  + A+++ +L  L IK+L  LE       GE +A    D
Sbjct: 189 VDKFEKVGDDAFKPYAEQFGPLDLALKQRVLEFLQIKTLASLEQTLAPLGGEKLAARLGD 248

Query: 306 LKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTF 365
            + L       G S +I+ D  VVRGLAYYTG VFE FDR G+LRAI GGGRY+ L+   
Sbjct: 249 WRKLLDGLAAMGLSPFIEVDLGVVRGLAYYTGFVFEAFDRKGELRAIAGGGRYNDLVKKL 308

Query: 366 GGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMV-ATTLRGK 424
           GG D+PA GF  GD  +  LL  +GL+P    Q  ++ C +    +  A+      LR  
Sbjct: 309 GGPDLPAVGFAIGDVTLGLLLDARGLMPAF-VQASDVYCVIGGAAERQAAFADVNALRAA 367

Query: 425 GQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDELE 484
           G  VD  L+  P    FK AA   A+  ++ G  E  K +V ++ L++  + ++  ++++
Sbjct: 368 GFKVDYPLKDVPFGKQFKLAADSGAKLALIYGPDELAKNVVKLRDLTTRTETDVPREQVQ 427

Opitutus terrae (strain DSM 11246 / PB90-1) (taxid: 452637)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q9HLX5|SYH_THEAC Histidine--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=hisS PE=1 SV=1 Back     alignment and function description
>sp|Q5UXW4|SYH_HALMA Histidine--tRNA ligase OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q97CE6|SYH_THEVO Histidine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|B0SQQ4|SYH_LEPBP Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|B0SH39|SYH_LEPBA Histidine--tRNA ligase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q3IMP5|SYH_NATPD Histidine--tRNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q04X87|SYH_LEPBL Histidine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q04WC4|SYH_LEPBJ Histidine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=hisS PE=3 SV=1 Back     alignment and function description
>sp|Q8U431|SYH_PYRFU Histidine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=hisS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
225440069554 PREDICTED: histidyl-tRNA synthetase-like 0.989 0.864 0.801 0.0
255556918503 histidyl-tRNA synthetase, putative [Rici 0.991 0.954 0.767 0.0
449451054507 PREDICTED: histidine--tRNA ligase-like [ 0.991 0.946 0.766 0.0
449482410507 PREDICTED: histidine--tRNA ligase-like [ 0.985 0.940 0.766 0.0
297806295486 histidyl-tRNA synthetase 1 [Arabidopsis 0.981 0.977 0.753 0.0
356505252501 PREDICTED: histidyl-tRNA synthetase-like 0.995 0.962 0.731 0.0
224068773441 predicted protein [Populus trichocarpa] 0.896 0.984 0.818 0.0
15231337486 Histidyl-tRNA synthetase 1 [Arabidopsis 0.977 0.973 0.744 0.0
297741644404 unnamed protein product [Vitis vinifera] 0.822 0.985 0.871 0.0
297819142442 histidyl-tRNA synthetase 1 [Arabidopsis 0.861 0.943 0.715 0.0
>gi|225440069|ref|XP_002277086.1| PREDICTED: histidyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/489 (80%), Positives = 427/489 (87%), Gaps = 10/489 (2%)

Query: 4   IHSSLSFYMKPLFLSNSSLFP--RKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSP 61
           + SSLS  + P  L     FP  R  +       +P      SS  N  GGRSGA  +SP
Sbjct: 68  LRSSLSSALVPFPLIRLRPFPNPRNLSSLSSAASSPTHSLVSSSGDNVGGGRSGA--ISP 125

Query: 62  SPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFI 121
            P+ D +QKIDVNPP+GTRDFPPEDMRLRNWLF++F+EVSR FGFEEVDFPVLESEALFI
Sbjct: 126 PPIEDSVQKIDVNPPRGTRDFPPEDMRLRNWLFNHFREVSRSFGFEEVDFPVLESEALFI 185

Query: 122 RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER 181
           RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER
Sbjct: 186 RKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER 245

Query: 182 MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVL 241
           MTRGRRREHYQWNMDIIGVP V AEAELISSI+TFFKR+GITASDVGF++SSRKVLQEVL
Sbjct: 246 MTRGRRREHYQWNMDIIGVPEVMAEAELISSIVTFFKRVGITASDVGFKVSSRKVLQEVL 305

Query: 242 RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE-- 299
           RC+SIPE+LFGKVC+IIDK+EK+P+D I  +LKS GMSE AI++LL+VLSIKSLT+LE  
Sbjct: 306 RCYSIPENLFGKVCVIIDKMEKIPIDEITKELKSLGMSEEAIKDLLQVLSIKSLTKLEEI 365

Query: 300 ----GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGG 355
               GEAVADLK LFSLAEKFGYS+WIQFDASVVRGLAYYTGIVFE FDR+GKLRAICGG
Sbjct: 366 LGAAGEAVADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDREGKLRAICGG 425

Query: 356 GRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAAS 415
           GRYD+LLSTFGGDD+PACGFGFGDAVI+ELLKEKGLLP L+ QVENIVCALDH LQGAA+
Sbjct: 426 GRYDRLLSTFGGDDVPACGFGFGDAVIIELLKEKGLLPELSLQVENIVCALDHYLQGAAA 485

Query: 416 MVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQ 475
            VAT LR KGQSVDLVLESKPLKWVFKRAAR NAQRLILVG +EWQ+GMV VKILSSGEQ
Sbjct: 486 AVATRLREKGQSVDLVLESKPLKWVFKRAARTNAQRLILVGNSEWQRGMVSVKILSSGEQ 545

Query: 476 YEIKLDELE 484
           YEIKLDELE
Sbjct: 546 YEIKLDELE 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556918|ref|XP_002519492.1| histidyl-tRNA synthetase, putative [Ricinus communis] gi|223541355|gb|EEF42906.1| histidyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449451054|ref|XP_004143277.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449482410|ref|XP_004156273.1| PREDICTED: histidine--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297806295|ref|XP_002871031.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] gi|297316868|gb|EFH47290.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356505252|ref|XP_003521406.1| PREDICTED: histidyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|224068773|ref|XP_002326196.1| predicted protein [Populus trichocarpa] gi|222833389|gb|EEE71866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15231337|ref|NP_190196.1| Histidyl-tRNA synthetase 1 [Arabidopsis thaliana] gi|3659909|gb|AAC61600.1| histidyl-tRNA synthetase [Arabidopsis thaliana] gi|7798998|emb|CAB90937.1| histidyl-tRNA synthetase [Arabidopsis thaliana] gi|15810389|gb|AAL07082.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] gi|21436315|gb|AAM51327.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] gi|332644592|gb|AEE78113.1| Histidyl-tRNA synthetase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297741644|emb|CBI32776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297819142|ref|XP_002877454.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] gi|297323292|gb|EFH53713.1| histidyl-tRNA synthetase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query484
TAIR|locus:2075306486 HRS1 "Histidyl-tRNA synthetase 0.977 0.973 0.704 8.1e-179
TAIR|locus:1009023403263 AT5G03406 [Arabidopsis thalian 0.533 0.980 0.683 9e-93
TIGR_CMR|BA_3376425 BA_3376 "histidyl-tRNA synthet 0.834 0.950 0.276 4.8e-39
TIGR_CMR|BA_4633423 BA_4633 "histidyl-tRNA synthet 0.820 0.938 0.260 2.2e-34
TIGR_CMR|CHY_2205423 CHY_2205 "histidyl-tRNA synthe 0.799 0.914 0.288 4.7e-32
DICTYBASE|DDB_G0274159481 hisS "histidine-tRNA ligase" [ 0.626 0.629 0.278 6e-32
TAIR|locus:2075472883 AT3G02760 [Arabidopsis thalian 0.811 0.445 0.265 2.2e-31
UNIPROTKB|P67483423 hisS "Histidine--tRNA ligase" 0.811 0.929 0.279 2.1e-29
TIGR_CMR|CJE_0856408 CJE_0856 "histidyl-tRNA synthe 0.814 0.965 0.267 1.6e-27
TIGR_CMR|DET_0006418 DET_0006 "histidyl-tRNA synthe 0.809 0.937 0.263 2.8e-27
TAIR|locus:2075306 HRS1 "Histidyl-tRNA synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1736 (616.2 bits), Expect = 8.1e-179, P = 8.1e-179
 Identities = 350/497 (70%), Positives = 406/497 (81%)

Query:     1 MPAIH---SSLSFYMKPLFLSN--SSLFP-RKFTVPKEYLLNPRSLCALSSASNQNGGRS 54
             M AIH   + LS   +P+ L +  SS  P R+F++P+      R +CA   A+N  GGRS
Sbjct:     1 MRAIHIVTTRLSSSFRPILLLDLVSSCSPPRQFSIPR------RLICA---AAN-GGGRS 50

Query:    55 GARSLSPSPVSDDL-QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPV 113
             G+  ++P    +D  +KIDVNPPKGTRDFPPEDMRLRNWLF++F+EVSRL+G+EEVD+PV
Sbjct:    51 GS-IVAPLVTEEDFHKKIDVNPPKGTRDFPPEDMRLRNWLFNHFKEVSRLYGYEEVDYPV 109

Query:   114 LESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173
             LE+EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFA+
Sbjct:   110 LETEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAI 169

Query:   174 GQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISS 233
             GQCW           EHYQWNMDIIGVP VTAEAELISSI+TFFKRIGITASDVGF++SS
Sbjct:   170 GQCWRYERMTRGRRREHYQWNMDIIGVPQVTAEAELISSIVTFFKRIGITASDVGFKVSS 229

Query:   234 RKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293
             RKVLQE+L+ + +PE LFG+VCIIIDKIEK+P+D IK +L   G+SE AIE+LL+VLS+K
Sbjct:   230 RKVLQELLKKYGVPEDLFGRVCIIIDKIEKIPIDEIKKELGFTGISEDAIEQLLQVLSVK 289

Query:   294 SLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDG 347
             SL +LE      GEA+ADLK LFSLAEKFGYS+WIQFDASVVRGLAYYTGIVFE FDR G
Sbjct:   290 SLDDLEDIIGGAGEAIADLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRKG 349

Query:   348 KLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALD 407
             KLRAICGGGRYD+LLST+GGDD PACGFGFGDAVI               +VENIVCALD
Sbjct:   350 KLRAICGGGRYDRLLSTYGGDDFPACGFGFGDAVIVELLKEKDLLPELGQEVENIVCALD 409

Query:   408 HNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGV 467
              +LQGAA+ VAT LR KGQ+VDLVLESKPLKWVFKRAAR+NA+RL+LVG TEW+ G V V
Sbjct:   410 KDLQGAAATVATALRDKGQTVDLVLESKPLKWVFKRAARVNARRLVLVGKTEWEDGSVSV 469

Query:   468 KILSSGEQYEIKLDELE 484
             K+LSSGEQ+++KL +LE
Sbjct:   470 KVLSSGEQFQVKLSDLE 486
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004821 "histidine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006427 "histidyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:1009023403 AT5G03406 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3376 BA_3376 "histidyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4633 BA_4633 "histidyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2205 CHY_2205 "histidyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274159 hisS "histidine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2075472 AT3G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P67483 hisS "Histidine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0856 CJE_0856 "histidyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0006 DET_0006 "histidyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8F9Y3SYH_LEPIN6, ., 1, ., 1, ., 2, 10.33730.82430.9088yesno
O26346SYH_METTH6, ., 1, ., 1, ., 2, 10.30890.83880.9552yesno
A1RUZ2SYH_PYRIL6, ., 1, ., 1, ., 2, 10.30730.81610.9382yesno
O58028SYH_PYRHO6, ., 1, ., 1, ., 2, 10.35150.83050.9327yesno
B0R6V2SYH_HALS36, ., 1, ., 1, ., 2, 10.35040.82020.9189yesno
Q8U431SYH_PYRFU6, ., 1, ., 1, ., 2, 10.34200.83260.9328yesno
A6UQQ6SYH_METVS6, ., 1, ., 1, ., 2, 10.31540.80780.9354yesno
A6VHK3SYH_METM76, ., 1, ., 1, ., 2, 10.33170.80990.9377yesno
Q9HLX5SYH_THEAC6, ., 1, ., 1, ., 2, 10.34970.84090.9553yesno
Q9HNP5SYH_HALSA6, ., 1, ., 1, ., 2, 10.35040.82020.9189yesno
Q8TV61SYH_METKA6, ., 1, ., 1, ., 2, 10.32700.83260.9572yesno
Q8TS62SYH_METAC6, ., 1, ., 1, ., 2, 10.32140.82020.9612yesno
B1YCS2SYH_PYRNV6, ., 1, ., 1, ., 2, 10.30640.82020.9520yesno
B1ZUW6SYH_OPITP6, ., 1, ., 1, ., 2, 10.36420.83880.9290yesno
B9LRS2SYH_HALLT6, ., 1, ., 1, ., 2, 10.33170.82850.9072yesno
Q3IMP5SYH_NATPD6, ., 1, ., 1, ., 2, 10.34140.83050.9305yesno
A9A947SYH_METM66, ., 1, ., 1, ., 2, 10.32940.80990.9377yesno
Q97CE6SYH_THEVO6, ., 1, ., 1, ., 2, 10.35730.82640.9389yesno
A4G0V7SYH_METM56, ., 1, ., 1, ., 2, 10.32470.80990.9377yesno
A4WIN2SYH_PYRAR6, ., 1, ., 1, ., 2, 10.30730.81610.9427yesno
Q8PVB0SYH_METMA6, ., 1, ., 1, ., 2, 10.32300.81810.9635yesno
Q6L1Q5SYH_PICTO6, ., 1, ., 1, ., 2, 10.34360.82430.9432yesno
B0SH39SYH_LEPBA6, ., 1, ., 1, ., 2, 10.35510.84500.9359yesno
Q04WC4SYH_LEPBJ6, ., 1, ., 1, ., 2, 10.33900.82850.9134yesno
P62371SYH_LEPIC6, ., 1, ., 1, ., 2, 10.33730.82430.9088yesno
Q5JIM2SYH_PYRKO6, ., 1, ., 1, ., 2, 10.31980.82430.9151yesno
Q5UXW4SYH_HALMA6, ., 1, ., 1, ., 2, 10.34600.82230.9149yesno
Q9UY31SYH_PYRAB6, ., 1, ., 1, ., 2, 10.34200.83050.9327yesno
P60921SYH_METMP6, ., 1, ., 1, ., 2, 10.320.80990.9423yesno
A2SQI5SYH_METLZ6, ., 1, ., 1, ., 2, 10.30360.80990.9560yesno
A4YJ03SYH_METS56, ., 1, ., 1, ., 2, 10.30440.83880.9441yesno
Q04X87SYH_LEPBL6, ., 1, ., 1, ., 2, 10.33900.82850.9134yesno
Q18DQ2SYH_HALWD6, ., 1, ., 1, ., 2, 10.31800.83470.9308yesno
B0SQQ4SYH_LEPBP6, ., 1, ., 1, ., 2, 10.35510.84500.9359yesno
Q58406SYH_METJA6, ., 1, ., 1, ., 2, 10.32860.80780.9399yesno
A6UT01SYH_META36, ., 1, ., 1, ., 2, 10.30640.80370.9306yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.766
4th Layer6.1.1.210.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
PLN02530487 PLN02530, PLN02530, histidine-tRNA ligase 0.0
COG0124429 COG0124, HisS, Histidyl-tRNA synthetase [Translati 1e-117
TIGR00442397 TIGR00442, hisS, histidyl-tRNA synthetase 1e-116
PRK00037412 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed 1e-114
cd00773261 cd00773, HisRS-like_core, Class II Histidinyl-tRNA 2e-93
PRK12420423 PRK12420, PRK12420, histidyl-tRNA synthetase; Prov 1e-70
TIGR00443313 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltran 3e-51
PLN02972763 PLN02972, PLN02972, Histidyl-tRNA synthetase 1e-45
PRK12292391 PRK12292, hisZ, ATP phosphoribosyltransferase regu 8e-44
COG3705390 COG3705, HisZ, ATP phosphoribosyltransferase invol 7e-41
pfam13393308 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase 5e-40
CHL00201430 CHL00201, syh, histidine-tRNA synthetase; Provisio 1e-30
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 2e-30
PRK12295373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 2e-11
cd0085991 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon 6e-10
PRK12293281 PRK12293, hisZ, ATP phosphoribosyltransferase regu 9e-10
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 8e-08
PRK12295373 PRK12295, hisZ, ATP phosphoribosyltransferase regu 5e-06
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 7e-06
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 2e-05
PRK12421392 PRK12421, PRK12421, ATP phosphoribosyltransferase 4e-04
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 6e-04
COG0442500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 7e-04
pfam01409245 pfam01409, tRNA-synt_2d, tRNA synthetases class II 0.002
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase Back     alignment and domain information 
 Score =  826 bits (2135), Expect = 0.0
 Identities = 338/488 (69%), Positives = 391/488 (80%), Gaps = 8/488 (1%)

Query: 3   AIHSSLSFYMKPLFLSNSSLFPRKFTVPKEYLLNPRSLCALSSASNQNGGRSGARSLSPS 62
           AI SS +  +    +   SL             +PR     +SA+   GGRSG  +  PS
Sbjct: 2   AIASSAT-RVSASAIRRPSLPLSSRCSFLLSASSPRGGRCAASAA-AGGGRSGGTTAPPS 59

Query: 63  PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
              D   KIDVNPPKGTRDFPPEDMRLRNWLF +F+EVSRLFGFEEVD PVLESE L+IR
Sbjct: 60  VQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIR 119

Query: 123 KAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM 182
           KAGEEI DQLY FED+G RRVALRPELTPSLARLV+QKGKS+SLPLKWFA+GQCWRYERM
Sbjct: 120 KAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERM 179

Query: 183 TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLR 242
           TRGRRREHYQWNMDIIGVP V AEAEL+++I+TFFKR+GIT+SDVG ++SSRKVLQ VL+
Sbjct: 180 TRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLK 239

Query: 243 CHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE--- 299
            + IPE  F  VC+I+DK+EKLP + I+ +L + G+SE AIE +L VLS+KSL +LE   
Sbjct: 240 SYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALL 299

Query: 300 ---GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGG 356
               EAVADLK LFSLAE +GY DW+ FDASVVRGLAYYTGIVFE FDR GKLRAICGGG
Sbjct: 300 GADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGG 359

Query: 357 RYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASM 416
           RYD+LLSTFGG+D PACGFGFGDAVI+ELLKEKGLLP L HQV+++V ALD +LQGAA+ 
Sbjct: 360 RYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPHQVDDVVFALDEDLQGAAAG 419

Query: 417 VATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQY 476
           VA+ LR KG+SVDLVLE K LKWVFK A RI A+RL+LVG +EW++GMV VK LSSGEQ 
Sbjct: 420 VASRLREKGRSVDLVLEPKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQT 479

Query: 477 EIKLDELE 484
           E+KLDELE
Sbjct: 480 EVKLDELE 487

Length = 487
>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232978 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237043 PRK12292, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|226228 COG3705, HisZ, ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222097 pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|164576 CHL00201, syh, histidine-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|238436 cd00859, HisRS_anticodon, HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|183411 PRK12293, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|183413 PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|237098 PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 484
PLN02530487 histidine-tRNA ligase 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
KOG1936518 consensus Histidyl-tRNA synthetase [Translation, r 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
PRK12420423 histidyl-tRNA synthetase; Provisional 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 100.0
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 100.0
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 100.0
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 100.0
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
KOG10351351 consensus eIF-2alpha kinase GCN2 [Translation, rib 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
PRK08661477 prolyl-tRNA synthetase; Provisional 100.0
PLN02837614 threonine-tRNA ligase 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 99.98
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 99.95
KOG1637560 consensus Threonyl-tRNA synthetase [Translation, r 99.94
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.94
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 99.93
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 99.93
KOG2324457 consensus Prolyl-tRNA synthetase [Translation, rib 99.92
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 99.91
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.91
PRK14894539 glycyl-tRNA synthetase; Provisional 99.87
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 99.86
PLN02734684 glycyl-tRNA synthetase 99.85
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.84
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 99.83
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.83
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.76
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 99.69
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.65
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.59
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.56
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.55
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.54
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.53
TIGR00414418 serS seryl-tRNA synthetase. This model represents 99.53
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.51
PRK05431425 seryl-tRNA synthetase; Provisional 99.48
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.47
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 99.46
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.44
PRK09350306 poxB regulator PoxA; Provisional 99.42
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.38
KOG2298599 consensus Glycyl-tRNA synthetase and related class 99.37
PRK00960517 seryl-tRNA synthetase; Provisional 99.33
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.31
PF12745 273 HGTP_anticodon2: Anticodon binding domain of tRNAs 99.17
KOG4163 551 consensus Prolyl-tRNA synthetase [Translation, rib 99.17
PLN02678448 seryl-tRNA synthetase 99.16
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.16
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 99.11
PLN02320502 seryl-tRNA synthetase 99.07
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 98.95
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.91
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 98.84
PLN02850530 aspartate-tRNA ligase 98.84
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 98.81
PRK06462335 asparagine synthetase A; Reviewed 98.81
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 98.78
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 98.71
PRK12445505 lysyl-tRNA synthetase; Reviewed 98.66
PTZ00417585 lysine-tRNA ligase; Provisional 98.61
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 98.59
PLN02502553 lysyl-tRNA synthetase 98.58
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 98.56
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 98.55
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 98.53
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.52
PTZ00401550 aspartyl-tRNA synthetase; Provisional 98.5
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 98.49
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.48
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 98.38
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.29
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 98.17
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 98.15
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 98.11
PLN02903652 aminoacyl-tRNA ligase 98.05
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 98.03
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 98.0
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.96
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.95
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.95
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.94
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 97.92
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.9
PTZ00385659 lysyl-tRNA synthetase; Provisional 97.86
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 97.64
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 97.61
PTZ00425586 asparagine-tRNA ligase; Provisional 97.45
KOG2411628 consensus Aspartyl-tRNA synthetase, mitochondrial 97.3
PLN02603565 asparaginyl-tRNA synthetase 97.24
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 97.17
PLN02221572 asparaginyl-tRNA synthetase 97.15
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 96.88
PLN02532633 asparagine-tRNA synthetase 96.87
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 96.65
PLN02788402 phenylalanine-tRNA synthetase 96.24
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 96.09
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 96.07
KOG1885560 consensus Lysyl-tRNA synthetase (class II) [Transl 96.04
PRK07080317 hypothetical protein; Validated 96.01
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 95.4
TIGR00472798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 94.11
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 93.0
PRK00629791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 92.58
KOG0554446 consensus Asparaginyl-tRNA synthetase (mitochondri 92.42
CHL00192704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 92.27
KOG0556533 consensus Aspartyl-tRNA synthetase [Translation, r 90.58
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 89.79
PRK06253529 O-phosphoseryl-tRNA synthetase; Reviewed 88.79
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 83.2
>PLN02530 histidine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=5.7e-89  Score=721.91  Aligned_cols=443  Identities=75%  Similarity=1.216  Sum_probs=406.6

Q ss_pred             hhhhhccccccCCCcccccccCCCCCCcccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHH
Q 011527           39 SLCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA  118 (484)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~  118 (484)
                      ..||.+.+  .+++|+++.+.+|++.+.+++|+++++|+||+||+|+++..+++|++.++++|++|||++|.||+||+.+
T Consensus        38 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~e  115 (487)
T PLN02530         38 GRCAASAA--AGGGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEE  115 (487)
T ss_pred             cchhhccc--cccccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH
Confidence            34444433  3378888888878888799999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhccccccceEEEEeCCCCeEeeCCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEE
Q 011527          119 LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDII  198 (484)
Q Consensus       119 l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eii  198 (484)
                      +|.++.|+...++||+|+|++|+.++||||+|+|+||+++++....++|+||||+|+|||+|+++.||+|||+|+|+|+|
T Consensus       116 l~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEii  195 (487)
T PLN02530        116 LYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDII  195 (487)
T ss_pred             HhccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEe
Confidence            99988888888999999999999999999999999999999876557899999999999999999999999999999999


Q ss_pred             cCCChhhHHHHHHHHHHHHHHcCCCCCceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCC
Q 011527          199 GVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGM  278 (484)
Q Consensus       199 g~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~  278 (484)
                      |.++..+|+|+|.++.++|+.||+++.++.|+|||+++++.+|+.++++++.+..++.+++++++.+.+++++.|...|+
T Consensus       196 G~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~  275 (487)
T PLN02530        196 GVPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGV  275 (487)
T ss_pred             CCCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCC
Confidence            99999999999999999999999964469999999999999999999999888899999999999999999999999999


Q ss_pred             CHHHHHHHHHHccCCChhhhh------HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCccee
Q 011527          279 SEAAIEELLRVLSIKSLTELE------GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAI  352 (484)
Q Consensus       279 ~~~~~~~l~~l~~~~~~~~l~------~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i  352 (484)
                      +.+..+.+++++..+.++.+.      .+++++|++++++++.+|+..++.|||+++||++||||+|||+|+..|...+|
T Consensus       276 ~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I  355 (487)
T PLN02530        276 SEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAI  355 (487)
T ss_pred             CHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCccee
Confidence            998888887777654433321      36899999999999999998889999999999999999999999855666899


Q ss_pred             ecCccccHhHhhcCCCCCceecccchHHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEe
Q 011527          353 CGGGRYDQLLSTFGGDDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVL  432 (484)
Q Consensus       353 ~~GGRYD~L~~~f~~~~~pavGfsigierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~  432 (484)
                      |+|||||+|++.||+++.||||||+|+++|++++.+.+..|.+..+.+|+|++++++...+|++++++||++|++|++++
T Consensus       356 ~gGGRYD~Li~~fgg~~~pAvGFa~g~~~l~~~l~~~g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~  435 (487)
T PLN02530        356 CGGGRYDRLLSTFGGEDTPACGFGFGDAVIVELLKEKGLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVL  435 (487)
T ss_pred             eecccHHHHHHHhCCCCCCeeEEEEhHHHHHHHHHhcCCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEec
Confidence            99999999999999888999999999999999998877777777788999999998888999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHcCCCEEEEEcCCccccCeEEEEECCCCceeeeccCcC
Q 011527          433 ESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLDEL  483 (484)
Q Consensus       433 ~~~~~~~~~~~a~~~gi~~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~el  483 (484)
                      .+.++++++++|++.|+++++++|++|+++++|+|||+.+++|.+|+++++
T Consensus       436 ~~~~l~k~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el  486 (487)
T PLN02530        436 EPKKLKWVFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL  486 (487)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence            888899999999999999999999999999999999999999999999876

>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
3hrk_A456 Histidyl-Trna Synthetase From Trypanosoma Cruzi (Hi 1e-108
3hri_A456 Histidyl-Trna Synthetase (Apo) From Trypanosoma Bru 1e-108
1wu7_A434 Crystal Structure Of Histidyl-Trna Synthetase From 6e-59
1qe0_A420 Crystal Structure Of Apo S. Aureus Histidyl-Trna Sy 1e-29
4g85_A517 Crystal Structure Of Human Hisrs Length = 517 5e-24
4g84_A464 Crystal Structure Of Human Hisrs Length = 464 1e-23
2el9_A431 Crystal Structure Of E.Coli Histidyl-Trna Synthetas 1e-22
3net_A465 Crystal Structure Of Histidyl-Trna Synthetase From 1e-22
1adj_A421 Histidyl-Trna Synthetase In Complex With Histidine 4e-22
1htt_A423 Histidyl-Trna Synthetase Length = 423 4e-22
1kmm_A424 Histidyl-Trna Synthetase Complexed With Histidyl-Ad 4e-22
3od1_A400 The Crystal Structure Of An Atp Phosphoribosyltrans 2e-21
4e51_A467 Crystal Structure Of A Histidyl-Trna Synthetase His 6e-17
3rac_A373 Crystal Strucutre Of Histidine--Trna Ligase Subunit 4e-11
1z7m_A344 Atp Phosphoribosyl Transferase (hiszg Atp-prtase) F 2e-07
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidyl-Adenylate Complex) Length = 456 Back     alignment and structure 
Iteration: 1

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/425 (45%), Positives = 268/425 (63%), Gaps = 9/425 (2%)
Query: 56  ARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE 115
           A++  P  +  ++  ++  P +G RDFPPE MR R  LF  F   ++ FGFEE D PVLE
Sbjct: 14  AQTQGPGSMQKNM--VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLE 71
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ 175
           SE L+IRKAGEEI +Q++ F  +G  RVALRPE+TPSLARL++ KG+S+ LP KW+++ Q
Sbjct: 72  SEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQ 131
Query: 176 CWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235
           CW           EHYQWNMDI+GV +V+AE EL+ +     + +G+++ DVG +++SRK
Sbjct: 132 CWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRK 191
Query: 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295
           VLQ V+    +    F  VC+I+DK+EK+P + ++  L   G+    ++ +   LS+KS+
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251
Query: 296 TEL------EGEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKL 349
            E+      E EAV +L+  F   E +GY DW+ FDASVVRGLAYYTGIVFE FDR+GK 
Sbjct: 252 DEIAQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKF 311
Query: 350 RAICGGGRYDQLLSTFGG-DDIPACGFGFGDAVIXXXXXXXXXXXXXNHQVENIVCALDH 408
           RA+CGGGRYD LL+T+G    IP  GFGFGD VI              H V+++V   D 
Sbjct: 312 RALCGGGRYDNLLTTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDE 371
Query: 409 NLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVK 468
           +++  A  V   LR  G+S D++L+ K +   F  A R+ A R +LV   EW++G V VK
Sbjct: 372 SMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVK 431
Query: 469 ILSSG 473
           +L  G
Sbjct: 432 MLREG 436
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei Length = 456 Back     alignment and structure
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Thermoplasma Acidophilum Length = 434 Back     alignment and structure
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna Synthetase Length = 420 Back     alignment and structure
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs Length = 517 Back     alignment and structure
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs Length = 464 Back     alignment and structure
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase Complexed With A Histidyl-Adenylate Analogue Length = 431 Back     alignment and structure
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc Sp. Pcc 7120 Length = 465 Back     alignment and structure
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine Length = 421 Back     alignment and structure
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase Length = 423 Back     alignment and structure
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate Length = 424 Back     alignment and structure
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus Halodurans C Length = 400 Back     alignment and structure
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From Burkholderia Thailandensis Bound To Histidine Length = 467 Back     alignment and structure
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 373 Back     alignment and structure
>pdb|1Z7M|A Chain A, Atp Phosphoribosyl Transferase (hiszg Atp-prtase) From Lactococcus Lactis Length = 344 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query484
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 1e-173
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 1e-160
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 1e-150
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 1e-117
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 2e-95
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 4e-78
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 7e-77
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 4e-76
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 5e-75
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 2e-69
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 3e-61
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 1e-52
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 4e-04
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 8e-04
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456 Back     alignment and structure
 Score =  494 bits (1275), Expect = e-173
 Identities = 209/423 (49%), Positives = 284/423 (67%), Gaps = 7/423 (1%)

Query: 69  QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
             ++  P +G RDFPPE MR R  LF  F   ++ FGFEE D PVLESE L+IRKAGEEI
Sbjct: 25  NMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEI 84

Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRR 188
            +Q++ F  +G  RVALRPE+TPSLARL++ KG+S+ LP KW+++ QCWRYE +TRGRRR
Sbjct: 85  TEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRR 144

Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
           EHYQWNMDI+GV +V+AE EL+ +     + +G+++ DVG +++SRKVLQ V+    +  
Sbjct: 145 EHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGVTS 204

Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL------EGEA 302
             F  VC+I+DK+EK+P + ++  L   G+    ++ +   LS+KS+ E+      E EA
Sbjct: 205 DKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEEHEA 264

Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLL 362
           V +L+  F   E +GY DW+ FDASVVRGLAYYTGIVFE FDR+GK RA+CGGGRYD LL
Sbjct: 265 VKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLL 324

Query: 363 STFGG-DDIPACGFGFGDAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTL 421
           +T+G    IP  GFGFGD VI+ELL+EK LLP + H V+++V   D +++  A  V   L
Sbjct: 325 TTYGSPTPIPCAGFGFGDCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRL 384

Query: 422 RGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTTEWQKGMVGVKILSSGEQYEIKLD 481
           R  G+S D++L+ K +   F  A R+ A R +LV   EW++G V VK+L  G   E    
Sbjct: 385 RDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGA 444

Query: 482 ELE 484
           E  
Sbjct: 445 ERG 447
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400 Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Length = 344 Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Length = 421 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Length = 423 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Length = 467 Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Length = 275 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 100.0
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 99.95
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 99.94
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.83
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 99.8
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 99.79
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 99.75
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.71
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 99.69
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 99.68
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.68
3err_A536 Fusion protein of microtubule binding domain from 99.65
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.65
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 99.61
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.54
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.4
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.29
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 99.18
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 99.1
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 99.1
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 99.01
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 98.86
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 98.69
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 98.67
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 98.56
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.46
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 98.41
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.37
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 98.35
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.3
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 98.17
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 98.12
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.11
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 98.11
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.1
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 98.1
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.1
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.08
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.06
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 98.04
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 98.0
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.93
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 97.77
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 97.69
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 97.61
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 97.32
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 97.22
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 97.0
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 95.68
3pco_B795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 95.38
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
Probab=100.00  E-value=3.4e-87  Score=702.10  Aligned_cols=417  Identities=50%  Similarity=0.912  Sum_probs=371.7

Q ss_pred             cccccccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEee
Q 011527           66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL  145 (484)
Q Consensus        66 ~~~~~~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~L  145 (484)
                      +.++|+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+++.++||+|.|++|+.++|
T Consensus        22 ~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~L  101 (456)
T 3lc0_A           22 MQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVAL  101 (456)
T ss_dssp             ---CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEE
T ss_pred             hhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEec
Confidence            77889999999999999999999999999999999999999999999999999999877888889999999999999999


Q ss_pred             CCCChHHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCC
Q 011527          146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITAS  225 (484)
Q Consensus       146 RpD~T~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~  225 (484)
                      |||+|+|+||+++++....++|+|+||+|+|||+|+|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|+.+.
T Consensus       102 Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~  181 (456)
T 3lc0_A          102 RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSK  181 (456)
T ss_dssp             CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999877678899999999999999999999999999999999999999999999999999999999423


Q ss_pred             ceEEEeCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCCChhhhh------
Q 011527          226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELE------  299 (484)
Q Consensus       226 ~~~i~i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~~~~~l~------  299 (484)
                      ++.|+|||+++++++++.+|++++.+..++.+++++++.+++++++.|..++++++.++.|++++..+.++.+.      
T Consensus       182 ~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~~  261 (456)
T 3lc0_A          182 DVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQRVGEE  261 (456)
T ss_dssp             TEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHHHHCTT
T ss_pred             ceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHhHH
Confidence            79999999999999999999999999999999999999999999999999999999999888887665444332      


Q ss_pred             HHHHHHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCC-CCceecccch
Q 011527          300 GEAVADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGD-DIPACGFGFG  378 (484)
Q Consensus       300 ~~~~~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~-~~pavGfsig  378 (484)
                      .+++++|++++++|+.+|+..++.|||+++||++||||+|||++...|...+||+|||||+|++.||++ +.||||||+|
T Consensus       262 ~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~PavGFaig  341 (456)
T 3lc0_A          262 HEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCAGFGFG  341 (456)
T ss_dssp             CHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCEEEEEeE
Confidence            356999999999999999988899999999999999999999997666778999999999999999987 7999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCccEEEEEcCcchHHHHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 011527          379 DAVILELLKEKGLLPPLNHQVENIVCALDHNLQGAASMVATTLRGKGQSVDLVLESKPLKWVFKRAARINAQRLILVGTT  458 (484)
Q Consensus       379 ierl~~~l~e~~~~p~~~~~~~v~Vi~~~~~~~~~a~~la~~Lr~~Gi~v~~~~~~~~~~~~~~~a~~~gi~~~iiig~~  458 (484)
                      +|||+.+|.+.+..++...+++++|++++++...+++++++.||++|++|++++.+.++++++++|++.|++|+||+|++
T Consensus       342 ~eRl~~~l~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq~k~A~k~ga~~vviiGe~  421 (456)
T 3lc0_A          342 DCVIVELLQEKRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQAFNYADRVGAVRAVLVAPE  421 (456)
T ss_dssp             SSHHHHHHHHTTCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHHHHHHHHTTEEEEEEECHH
T ss_pred             HHHHHHHHHhcCCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHcCCCEEEEECCc
Confidence            99999999987766554456899999999888899999999999999999999888899999999999999999999999


Q ss_pred             ccccCeEEEEECCCCceeeeccCc
Q 011527          459 EWQKGMVGVKILSSGEQYEIKLDE  482 (484)
Q Consensus       459 e~~~~~v~vk~~~~~~~~~v~~~e  482 (484)
                      |+++|+|+||||.+|+|.+++.++
T Consensus       422 E~~~g~v~vK~l~tgeQ~~~~~~~  445 (456)
T 3lc0_A          422 EWERGEVQVKMLREGTGKEEGGAE  445 (456)
T ss_dssp             HHHTTEEEEEECC-----------
T ss_pred             hhcCCeEEEEECCCCCeEEecccc
Confidence            999999999999999999887765
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 484
d1wu7a2327 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisR 9e-62
d1h4vb2324 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisR 2e-58
d1qe0a2325 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisR 3e-57
d1kmma2322 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR 8e-57
d1z7ma1318 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase 2e-47
d1usya_275 d.104.1.1 (A:) ATP phosphoribosyltransferase regul 4e-44
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 8e-10
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 2e-09
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 3e-09
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 5e-08
d1nj8a3268 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) 3e-06
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 8e-04
d1hc7a2272 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) 0.003
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 327 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  202 bits (514), Expect = 9e-62
 Identities = 127/332 (38%), Positives = 186/332 (56%), Gaps = 12/332 (3%)

Query: 70  KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
           ++ +   +G RDF PEDM +  ++F   +E +  FGF  +DFP LE   L+  K+GEE+ 
Sbjct: 1   RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 60

Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRRE 189
            Q Y F D+G R V L PE TPS  R+V  +      PL+W++  + WRYE    GR RE
Sbjct: 61  QQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQR-PLRWYSFPKVWRYEEPQAGRYRE 119

Query: 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEH 249
           HYQ+N DI G  +  A+AE+I+   +   R+G+       RI+SRK+++E      +   
Sbjct: 120 HYQFNADIFGSDSPEADAEVIALASSILDRLGLQ-DIYEIRINSRKIMEE--IIGGMTSS 176

Query: 250 LFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS-------IKSLTELEGEA 302
               V  IID+  K+  +   + L+SAG+ E  +  +  + S       +  +T    E 
Sbjct: 177 DPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEE 236

Query: 303 VADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLL 362
           +A +  +  L   +G    +++D S+VRGL+YYTGIVFE +DR G+ RAI GGGRYD L 
Sbjct: 237 IARMAAVEDLLASYGV-KNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLA 295

Query: 363 STFGGDDIPACGFGFGDAVILELLKEKGLLPP 394
           S   G+ +PA GFG GDAVI  LLK + +  P
Sbjct: 296 SLMSGESVPAVGFGMGDAVISLLLKRENVQIP 327
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Length = 324 Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Length = 325 Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318 Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Length = 275 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 268 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Length = 272 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query484
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 100.0
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 100.0
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 100.0
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 100.0
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 100.0
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.8
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 99.78
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 99.76
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.75
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.73
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.7
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.68
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.66
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 99.66
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.64
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.64
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.61
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.61
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.52
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.51
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.43
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.41
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 99.03
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 98.95
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 98.89
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 98.36
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 98.24
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 98.19
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 98.15
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 98.15
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 98.14
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 98.14
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.75
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.47
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 95.76
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=9.7e-61  Score=481.03  Aligned_cols=316  Identities=40%  Similarity=0.734  Sum_probs=279.8

Q ss_pred             ccccCCCccccCChHhHHHHHHHHHHHHHHHHHcCCeeecCCccccHHHhhhhhccccccceEEEEeCCCCeEeeCCCCh
Q 011527           71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT  150 (484)
Q Consensus        71 ~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~~l~~~~~g~~~~~~~~~~~D~~G~~l~LRpD~T  150 (484)
                      |.+++|+|++|++|+++..+++|++.++++|++|||++|.||+||++++|..+.|+...+++|+|+|++|+.++||||+|
T Consensus         2 ~~~~~~~G~~D~~p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LRpD~T   81 (327)
T d1wu7a2           2 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEAT   81 (327)
T ss_dssp             CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSH
T ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhccccccc
Confidence            56799999999999999999999999999999999999999999999999888888888999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCeeEEEecCeeeeCcCCCCCccceEEeEEEEEcCCChhhHHHHHHHHHHHHHHcCCCCCceEEE
Q 011527          151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR  230 (484)
Q Consensus       151 ~~iaR~~~~~~~~~~lPlk~yyig~vfR~e~~~~gr~rEf~Q~g~eiig~~~~~adaEvi~l~~~~l~~lgl~~~~~~i~  230 (484)
                      +|+||+++++. ..+.|.|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|+|.++.++++.+|+.. .+.|.
T Consensus        82 ~~iar~~~~~~-~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~~~~~D~Eii~l~~~~l~~~~~~~-~~~i~  159 (327)
T d1wu7a2          82 PSTVRMVTSRK-DLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQD-IYEIR  159 (327)
T ss_dssp             HHHHHHHTTCT-TCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTTT-SEEEE
T ss_pred             chhhhHhhhhh-hccccceeeccCcceeccccccCCcchhhhhhhhhcCCcchHHHHHHHHHHHHHHhcccccc-ceeec
Confidence            99999998764 34679999999999999999999999999999999999999999999999999999999853 68899


Q ss_pred             eCCHHHHHHHHHhCCCCchhhhhHhHHHHhhccCCHHHHHHHHHhcCCCHHHHHHHHHHccCC-Chhhhh------HHHH
Q 011527          231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK-SLTELE------GEAV  303 (484)
Q Consensus       231 i~~~~il~~~l~~~g~~~~~~~~v~~~l~~~~~~~~~~l~~~L~~~g~~~~~~~~l~~l~~~~-~~~~l~------~~~~  303 (484)
                      +||+++++.+++.++.++.  ..+...+++.++...+.+.+.|...+...+....+..+.... .++.+.      ..++
T Consensus       160 l~~~~i~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~  237 (327)
T d1wu7a2         160 INSRKIMEEIIGGMTSSDP--FSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARITGKSSEEI  237 (327)
T ss_dssp             EEEHHHHHHHHHTTCSSCH--HHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHTTCCCHHH
T ss_pred             ccchhhHHHHHHhhhhhHH--HHHHHHHHHHHhhccchhhhhhhhhhhhhHHHhhhhhhcccchhhhHHHhhhchhhhHH
Confidence            9999999999998877653  345566788888888888888888888887777666665432 222221      4567


Q ss_pred             HHHHHHHHHHHhcCCcceEEEecCCccCCCceeceeEEEEecCCCcceeecCccccHhHhhcCCCCCceecccchHHHHH
Q 011527          304 ADLKLLFSLAEKFGYSDWIQFDASVVRGLAYYTGIVFECFDRDGKLRAICGGGRYDQLLSTFGGDDIPACGFGFGDAVIL  383 (484)
Q Consensus       304 ~~L~~l~~~l~~~g~~~~i~~Dl~l~r~~~YYtG~vFe~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfsigierl~  383 (484)
                      ++|..+.+.++.++.. .|.||++++|+++||||+||++|.++|...+||+|||||+|++.|++++.||||||+++|||+
T Consensus       238 ~~l~~l~~~l~~~~~~-~i~~D~~~~r~~~YYtGivFe~~~~~~~~~~i~~GGRYD~L~~~f~g~~~pAvGfsl~~~~l~  316 (327)
T d1wu7a2         238 ARMAAVEDLLASYGVK-NVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVIS  316 (327)
T ss_dssp             HHHHHHHHHHHHTTCC-CCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEEEEEHHHHH
T ss_pred             HHHHHHHHHHHhcCCc-ceeEccccCCCCCCcCCeEEEEEecCCCcceeeecccchHHHHhcCCCCCCeEEEEeeHHHHH
Confidence            7888899999999974 589999999999999999999998766667999999999999999878899999999999999


Q ss_pred             HHHHHcCC
Q 011527          384 ELLKEKGL  391 (484)
Q Consensus       384 ~~l~e~~~  391 (484)
                      .+|.+.++
T Consensus       317 ~~l~~~~~  324 (327)
T d1wu7a2         317 LLLKRENV  324 (327)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            99988764
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure