Citrus Sinensis ID: 011546

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---

MQLRKLSLQPSSPLRVLSSKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHcccccccccccHHHHHHcccccccEEEEcccccccccccEEEEEHHHccccccEEEEEccccEEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccc

cHHHHHHHcccHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHccHHHHHcEEEEEEccHHHHHHHHHHHcccccccccccccEEEccccccccEEEEccHHHccccccEEEEEHHHHHccccHEEEEccccEEEEEEEEcccccEEEEEccccccHHHHcccHHHcccccccccccEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHccccccccccccccccccccHHHHHHHHHHccccEEEcccccHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHccEEEEEEEcccccccccccc

mqlrklslqpssplrvlsskypfpllqkwsrfssssssesqipnshsveplddnrsehaSTAIsidrsglynppehsherKLESELVKHLKGIIKFRGGPISVAEYMEEVltnpkagfyinrdvfgaegdfitspevSQMFGEMVGVWAMCLWEqmgqpnrvnlvelgpgrgtLMADLLRGASKFKNFTESLHIHLVecsptlqklqhhnlkcmdennandnveertisslagtpvswhaaleqvpsgfptIIVAHEFydalpvhqfqkttRGWCEKLVDIAedssfrfvlspqptpaTLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKrigsdgggaLIIDyglngvvtDSLQAIRKHKfvdlfdnpgsadlsayVDFASISHSAEeaservsvhgpmtqsqflgslgINFRVESLLQNCTEEQAESLRTGYWSLvgegeapfwegpdeqapigmgTRYLAMAIVnknqgvpvpfe

mqlrklslqpssplrvlssKYPFPLLQKWSRFSSSSSSESQIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNknqgvpvpfe

MQLRKLSLQPSSPLRVLSSKYPFPLLQKWsrfssssssesqipnshsVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFasishsaeeaseRVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE

*************************************************************************************LVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCM*************ISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASI********************QFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVN**********

****************************************************************************************HLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESL***********LRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE

MQLRKLSLQPSSPLRVLSSKYPFPLLQKWS****************************ASTAISIDRSGLY**********LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISH***********HGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE

****K**LQPSSPLRVLSSKYPFPLLQKW*****************************************************ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVP****

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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		483	2.2.26 [Sep-21-2011]
Q54S83		484	NADH dehydrogenase [ubiqu	yes	no	0.879	0.878	0.385	2e-84
Q08BY0		422	NADH dehydrogenase [ubiqu	yes	no	0.677	0.774	0.435	3e-76
Q9VGR2		437	NADH dehydrogenase [ubiqu	yes	no	0.768	0.848	0.420	7e-75
Q9CWG8		436	NADH dehydrogenase [ubiqu	yes	no	0.753	0.834	0.414	5e-74
Q5XI79		436	NADH dehydrogenase [ubiqu	yes	no	0.757	0.839	0.415	2e-72
Q5BKM6		430	NADH dehydrogenase [ubiqu	yes	no	0.683	0.767	0.433	1e-71
Q7L592		441	NADH dehydrogenase [ubiqu	yes	no	0.706	0.773	0.412	2e-71
Q2KHV5		441	NADH dehydrogenase [ubiqu	yes	no	0.755	0.827	0.398	1e-70
Q6GQ37		437	NADH dehydrogenase [ubiqu	N/A	no	0.766	0.846	0.391	3e-70
Q09644		426	NADH dehydrogenase [ubiqu	yes	no	0.726	0.823	0.370	2e-57

>sp\|Q54S83\|NDUF7_DICDI NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Dictyostelium discoideum GN=midA PE=1 SV=1	Back alignment and function desciption

 Score =  313 bits (802), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/470 (38%), Positives = 262/470 (55%), Gaps = 45/470 (9%)

Query: 32  FSSSSSSESQIPNSHSVEPLDDNRSEHASTA--------ISIDRSGLYNPPEHSHERKLE 83
           F ++S S +   N + ++   D   EH   A        +S D+SGL   P+   + +  
Sbjct: 28  FINNSLSYTTTSNENDIK---DKNEEHDHRAKGKGRELLLSFDKSGLAQFPKQVFKNRKY 84

Query: 84  --SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMF 141
             ++  K+L+ I K RG P+S+  +++EVLTNPK G+Y+N+DVFG  GDFIT+PEVSQ+F
Sbjct: 85  PITDFEKYLQDITKVRG-PMSIDTFIKEVLTNPKYGYYMNKDVFGKGGDFITAPEVSQLF 143

Query: 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201
           GEM+G+W +  WE MG+P ++ +VE+GPGRGTLM D+LR    FK F +S+ +HLVE SP
Sbjct: 144 GEMIGIWCVATWEAMGKPKKLQIVEMGPGRGTLMKDILRSTKVFKEFYDSISVHLVEASP 203

Query: 202 TLQKLQHHNLKCMDENNANDNVEERTISSL-AGTPVSWHAALEQVPSGFPTIIVAHEFYD 260
             +K Q  NL    +     N + +TI     G  V+W   LE+VP+  PT+ +A EF+D
Sbjct: 204 ANKKTQKQNLLYFKDKAI--NFDHKTIGETPNGIKVTWVGKLEEVPTDIPTLFLAQEFFD 261

Query: 261 ALPVH--QFQKTTRGWCEKLV--DIAEDSSF--RFVLSPQPTPATLFLLQRC-KWAADKE 313
           ALP+H  +F +    WCE LV  DI E   +  RFV S  PT  T  +     ++  D  
Sbjct: 262 ALPIHVFRFSREKNDWCEVLVDEDITEHGEYYLRFVQSKGPTLMTTAVKHLLPEFGLDG- 320

Query: 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDN 373
                 +E+    + ++  +A RI   GG ALIIDYG + +V  SLQAIR H+FVD+ D 
Sbjct: 321 ----YQVELGLAGLAISQQIANRIDKSGGAALIIDYGYDKIVKSSLQAIRDHEFVDILDK 376

Query: 374 PGSADLSAYVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNC-TEEQA 432
           PG+ADLS +VDF +I  + +    + +  GP+ Q  FL  +GI  R+  + +   + E+ 
Sbjct: 377 PGTADLSVWVDFQTIRKTVKLLKNKSTAIGPVDQGIFLKEMGIEHRLAQIGRKLDSNEKF 436

Query: 433 ESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPF 482
           E L  GY  LV               P  MGT Y  + I +KN   P+ F
Sbjct: 437 EELVMGYKKLVD--------------PKEMGTNYKVITICDKNI-TPIGF 471

Involved in mitochondrial function. Cells lacking midA have lower levels of ATP and no glycogen.
Dictyostelium discoideum (taxid: 44689)

>sp\|Q08BY0\|NDUF7_DANRE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Danio rerio GN=ndufaf7 PE=2 SV=1	Back alignment and function description

>sp\|Q9VGR2\|NDUF7_DROME NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Drosophila melanogaster GN=CG17726 PE=1 SV=1	Back alignment and function description

>sp\|Q9CWG8\|NDUF7_MOUSE NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Mus musculus GN=Ndufaf7 PE=2 SV=4	Back alignment and function description

>sp\|Q5XI79\|NDUF7_RAT NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Rattus norvegicus GN=Ndufaf7 PE=2 SV=1	Back alignment and function description

>sp\|Q5BKM6\|NDUF7_XENTR NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus tropicalis GN=ndufaf7 PE=2 SV=1	Back alignment and function description

>sp\|Q7L592\|NDUF7_HUMAN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Homo sapiens GN=NDUFAF7 PE=1 SV=1	Back alignment and function description

>sp\|Q2KHV5\|NDUF7_BOVIN NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Bos taurus GN=NDUFAF7 PE=2 SV=2	Back alignment and function description

>sp\|Q6GQ37\|NDUF7_XENLA NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 OS=Xenopus laevis GN=ndufaf7 PE=2 SV=1	Back alignment and function description

>sp\|Q09644\|NDUF7_CAEEL NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog OS=Caenorhabditis elegans GN=ZK1128.1 PE=3 SV=4	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
255552842		490	conserved hypothetical protein [Ricinus	0.915	0.902	0.830	0.0
225452686		483	PREDICTED: protein midA, mitochondrial [	0.910	0.910	0.807	0.0
449461913		493	PREDICTED: protein midA, mitochondrial-l	0.915	0.896	0.771	0.0
449505855		493	PREDICTED: protein midA, mitochondrial-l	0.915	0.896	0.771	0.0
42565270		471	uncharacterized protein [Arabidopsis tha	0.875	0.898	0.793	0.0
297815160		471	hypothetical protein ARALYDRAFT_905140 [	0.875	0.898	0.793	0.0
357473955		449	MidA-like protein [Medicago truncatula]	0.898	0.966	0.792	0.0
217074438		449	unknown [Medicago truncatula]	0.898	0.966	0.785	0.0
356538547		464	PREDICTED: protein midA, mitochondrial-l	0.877	0.913	0.818	0.0
115438020		504	Os01g0588800 [Oryza sativa Japonica Grou	0.886	0.849	0.779	0.0

>gi\|255552842\|ref\|XP_002517464.1\| conserved hypothetical protein [Ricinus communis] gi\|223543475\|gb\|EEF45006.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/443 (83%), Positives = 408/443 (92%), Gaps = 1/443 (0%)

Query: 41  QIPNSHSVEPLDDNRSEHASTAISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGP 100
           +IP+S+ VE L+DN  + +ST +S+DRSGLYNPPEHSHE   ESEL KHLKGIIKFRGGP
Sbjct: 49  EIPHSNLVEQLEDNNVQ-SSTTVSVDRSGLYNPPEHSHEPNSESELFKHLKGIIKFRGGP 107

Query: 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPN 160
           I+VAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWA+CLWEQM QP 
Sbjct: 108 ITVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWALCLWEQMEQPK 167

Query: 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAN 220
            VNLVELGPGRGTLMADLLRGASKFK+FTESLHIH+VECSP LQKLQHHNLKC+D+NN+ 
Sbjct: 168 SVNLVELGPGRGTLMADLLRGASKFKSFTESLHIHMVECSPALQKLQHHNLKCVDDNNSC 227

Query: 221 DNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVD 280
            + EERTIS+LAGTP+SWH +LEQVP+G PTII+AHEFYDALPVHQFQ+ +RGWCEK+VD
Sbjct: 228 GSGEERTISTLAGTPISWHTSLEQVPTGSPTIIIAHEFYDALPVHQFQRASRGWCEKMVD 287

Query: 281 IAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSD 340
           +AEDS FRFVLSPQPTPATL+L++RCKWAA +E+EKL HIEVC KA++LT  +AKRI SD
Sbjct: 288 VAEDSMFRFVLSPQPTPATLYLVKRCKWAAPEEIEKLNHIEVCPKAIDLTCTIAKRISSD 347

Query: 341 GGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVS 400
           GGGALIIDYGLNGVV+DSLQAIRKHKFVD+ DNPGSADLSAYVDFASI HSAEEASE VS
Sbjct: 348 GGGALIIDYGLNGVVSDSLQAIRKHKFVDILDNPGSADLSAYVDFASIRHSAEEASEAVS 407

Query: 401 VHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPI 460
           VHGP+TQSQFLGSLGINFRVE+LLQNCTE QAE LRTGYW LVGEGEAPFWEGP+EQ PI
Sbjct: 408 VHGPITQSQFLGSLGINFRVEALLQNCTEVQAEFLRTGYWRLVGEGEAPFWEGPEEQVPI 467

Query: 461 GMGTRYLAMAIVNKNQGVPVPFE 483
           GMGTRYLAMAIVNK QG+PVPF+
Sbjct: 468 GMGTRYLAMAIVNKKQGIPVPFQ 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225452686\|ref\|XP_002276826.1\| PREDICTED: protein midA, mitochondrial [Vitis vinifera] gi\|296087782\|emb\|CBI35038.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449461913\|ref\|XP_004148686.1\| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449505855\|ref\|XP_004162586.1\| PREDICTED: protein midA, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|42565270\|ref\|NP_189511.2\| uncharacterized protein [Arabidopsis thaliana] gi\|95147286\|gb\|ABF57278.1\| At3g28700 [Arabidopsis thaliana] gi\|332643957\|gb\|AEE77478.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297815160\|ref\|XP_002875463.1\| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata] gi\|297321301\|gb\|EFH51722.1\| hypothetical protein ARALYDRAFT_905140 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357473955\|ref\|XP_003607262.1\| MidA-like protein [Medicago truncatula] gi\|355508317\|gb\|AES89459.1\| MidA-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|217074438\|gb\|ACJ85579.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356538547\|ref\|XP_003537764.1\| PREDICTED: protein midA, mitochondrial-like [Glycine max]	Back alignment and taxonomy information

>gi|115438020|ref|NP_001043438.1| Os01g0588800 [Oryza sativa Japonica Group] gi|53792246|dbj|BAD52879.1| ATP synthase beta subunit/transcription termination factor rho-like [Oryza sativa Japonica Group] gi|113532969|dbj|BAF05352.1| Os01g0588800 [Oryza sativa Japonica Group] gi|215704112|dbj|BAG92952.1| unnamed protein product [Oryza sativa Japonica Group] gi|222618761|gb|EEE54893.1| hypothetical protein OsJ_02410 [Oryza sativa Japonica Group]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		483
TAIR\|locus:2095527		471	AT3G28700 [Arabidopsis thalian	0.971	0.995	0.713	7.9e-188
DICTYBASE\|DDB_G0282615		484	midA "DUF185 family protein" [	0.824	0.822	0.406	5.7e-75
ZFIN\|ZDB-GENE-060929-628		422	zgc:153989 "zgc:153989" [Danio	0.681	0.779	0.433	6.3e-69
FB\|FBgn0037880		437	CG17726 [Drosophila melanogast	0.728	0.805	0.441	2.7e-68
MGI\|MGI:1920944		436	Ndufaf7 "NADH dehydrogenase (u	0.741	0.821	0.427	1.2e-67
RGD\|1311578		436	Ndufaf7 "NADH dehydrogenase (u	0.757	0.839	0.417	1.3e-66
UNIPROTKB\|Q5BKM6		430	ndufaf7 "NADH dehydrogenase [u	0.755	0.848	0.407	7.4e-66
UNIPROTKB\|E2R8S9		440	C2orf56 "Uncharacterized prote	0.701	0.770	0.421	1.5e-65
UNIPROTKB\|F1MJQ5		441	C11H2orf56 "Uncharacterized pr	0.714	0.782	0.416	5.2e-65
UNIPROTKB\|Q7L592		441	NDUFAF7 "NADH dehydrogenase [u	0.701	0.768	0.414	1.4e-64

TAIR\|locus:2095527 AT3G28700 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1821 (646.1 bits), Expect = 7.9e-188, P = 7.9e-188
 Identities = 344/482 (71%), Positives = 392/482 (81%)

Query:     3 LRKLSLQPSSPLRVLSSKYPFPLLQKWXXXXXXXXXXXXXXXXXXVEPLDDNRS-EHAST 61
             LRKL  Q SS  R+L S  P PL  K                     P  ++ + EH  T
Sbjct:     2 LRKLLTQTSSR-RLLFSGVP-PLFSK------STISPFSSLSSSPEPPSSESPAVEHPGT 53

Query:    62 AISIDRSGLYNPPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYIN 121
              ISIDRS LY PP+HSHE   +SELVKHLK IIKFRGGPISVAEYMEEVLTNPKAGFY+N
Sbjct:    54 TISIDRSSLYTPPDHSHESTPDSELVKHLKSIIKFRGGPISVAEYMEEVLTNPKAGFYMN 113

Query:   122 RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRG 181
             RDVFGA+GDFITSPEVSQMFGEM+GVW +CLWEQMG+P RVNLVELGPGRGTLMADLLRG
Sbjct:   114 RDVFGAQGDFITSPEVSQMFGEMIGVWTVCLWEQMGRPERVNLVELGPGRGTLMADLLRG 173

Query:   182 ASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA 241
              SKFKNFTESLHIHLVECSP LQKLQH NLKC DE+++    E++ +SSLAGTPV WHA 
Sbjct:   174 TSKFKNFTESLHIHLVECSPALQKLQHQNLKCTDESSS----EKKAVSSLAGTPVHWHAT 229

Query:   242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLF 301
             L++VPSG PT+I+AHEFYDALPVHQFQK+TRGWCEK+VD+ EDS FRFVLSPQPTPA L+
Sbjct:   230 LQEVPSGVPTLIIAHEFYDALPVHQFQKSTRGWCEKMVDVGEDSKFRFVLSPQPTPAALY 289

Query:   302 LLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQA 361
             L++RC WA  +E EK+EH+E+  K+M+LT  MAKRIGSDGGGALIIDYG+N +++DSLQA
Sbjct:   290 LMKRCTWATPEEREKMEHVEISPKSMDLTQEMAKRIGSDGGGALIIDYGMNAIISDSLQA 349

Query:   362 IRKHKFVDLFDNPGSADLSAYVDFXXXXXXXXXXXXRVSVHGPMTQSQFLGSLGINFRVE 421
             IRKHKFV++ D+PGSADLSAYVDF             VSVHGPMTQSQFLGSLGINFRV+
Sbjct:   350 IRKHKFVNILDDPGSADLSAYVDFPSIKHSAEEASENVSVHGPMTQSQFLGSLGINFRVD 409

Query:   422 SLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVP 481
             +LLQNC +EQAESLR GYW LVG+GEAPFWEGP+EQ PIGMGTRYLAM+IVNKNQG+P P
Sbjct:   410 ALLQNCNDEQAESLRAGYWQLVGDGEAPFWEGPNEQTPIGMGTRYLAMSIVNKNQGIPAP 469

Query:   482 FE 483
             F+
Sbjct:   470 FQ 471

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IDA

GO:0015979 "photosynthesis" evidence=RCA

GO:0045333 "cellular respiration" evidence=RCA

DICTYBASE\|DDB_G0282615 midA "DUF185 family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060929-628 zgc:153989 "zgc:153989" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0037880 CG17726 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:1920944 Ndufaf7 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311578 Ndufaf7 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 7" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5BKM6 ndufaf7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R8S9 C2orf56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MJQ5 C11H2orf56 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7L592 NDUFAF7 "NADH dehydrogenase [ubiquinone] complex I, assembly factor 7" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54S83	NDUF7_DICDI	No assigned EC number	0.3851	0.8799	0.8780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		483
COG1565		370	COG1565, COG1565, Uncharacterized conserved protei	7e-80
pfam02636		241	pfam02636, Methyltransf_28, Putative S-adenosyl-L-	6e-73

>gnl\|CDD\|224481 COG1565, COG1565, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

 Score =  252 bits (646), Expect = 7e-80
 Identities = 125/398 (31%), Positives = 191/398 (47%), Gaps = 57/398 (14%)

Query: 98  GGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG 157
           GGPIS +++ME  L +P+ G+Y +    G +GDFIT+PE+SQ+FGE++    + LW+++G
Sbjct: 15  GGPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELG 74

Query: 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNFTESLHIHLVECSPTLQKLQHHNLKCMDE 216
           +P  + LVE+G GRGTL +D+LR   + +    E+L  +++E SP L+  Q   LK    
Sbjct: 75  RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK---- 130

Query: 217 NNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCE 276
               D              + W   +E +P  FP I+V++E +DALPV QF +T   + E
Sbjct: 131 -ATED-------------LIRWVEWVEDLPKKFPGIVVSNELFDALPVEQFIRTKGLFVE 176

Query: 277 KLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKR 336
           +   +  D+  R V S          L     A   E E    +EV      L  A+A+R
Sbjct: 177 R--VVVLDAEGRLVFSHAINELIDEAL-LPLDA--PEAEDGYILEVSPAREALLKAIAER 231

Query: 337 IGSDGGGALIIDYG-----------LNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDF 385
           +    G  L IDYG             G    +LQA R H   D   NPG ADL+A+VDF
Sbjct: 232 LER--GVFLFIDYGYPAEEYYHPRRAYG---TTLQAYRHHVHDDPLANPGLADLTAHVDF 286

Query: 386 ASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGE 445
            +++ +A+ A   + V G  TQ  FL  LG+  R+ +L     + +   +      L+  
Sbjct: 287 TALAKAAKAAG--LEVLGFKTQGDFLLDLGLLERLATLSAGKDDARYLKIAAQVKRLISP 344

Query: 446 GEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE 483
           G              GMG  +  +A   K + + +PF 
Sbjct: 345 G--------------GMGELFKVLAFGKKLK-IDLPFA 367

Length = 370

>gnl\|CDD\|217158 pfam02636, Methyltransf_28, Putative S-adenosyl-L-methionine-dependent methyltransferase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		483
COG1565		370	Uncharacterized conserved protein [Function unknow	100.0
KOG2901		415	consensus Uncharacterized conserved protein [Funct	100.0
PF02636		252	Methyltransf_28: Putative S-adenosyl-L-methionine-	100.0
PHA03412		241	putative methyltransferase; Provisional	96.87
PF05175		170	MTS: Methyltransferase small domain; InterPro: IPR	96.6
TIGR00740		239	methyltransferase, putative. A simple BLAST search	96.43
PF00398		262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.16
PRK15451		247	tRNA cmo(5)U34 methyltransferase; Provisional	95.95
PRK14896		258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.93
TIGR03587		204	Pse_Me-ase pseudaminic acid biosynthesis-associate	95.83
PRK01683		258	trans-aconitate 2-methyltransferase; Provisional	95.83
PF13847		152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.72
PLN02244		340	tocopherol O-methyltransferase	95.72
PHA03411		279	putative methyltransferase; Provisional	95.54
PRK06202		232	hypothetical protein; Provisional	95.52
PRK11036		255	putative S-adenosyl-L-methionine-dependent methylt	95.4
smart00650		169	rADc Ribosomal RNA adenine dimethylases.	95.38
COG0030		259	KsgA Dimethyladenosine transferase (rRNA methylati	95.23
PF13649		101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.23
TIGR02752		231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.21
TIGR03438		301	probable methyltransferase. This model represents	95.2
PF12847		112	Methyltransf_18: Methyltransferase domain; PDB: 3G	95.18
PF08242		99	Methyltransf_12: Methyltransferase domain; InterPr	95.15
PRK07580		230	Mg-protoporphyrin IX methyl transferase; Validated	95.06
TIGR02072		240	BioC biotin biosynthesis protein BioC. This enzyme	95.02
PRK08287		187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	94.84
TIGR02021		219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.62
PRK14103		255	trans-aconitate 2-methyltransferase; Provisional	94.51
PRK09328		275	N5-glutamine S-adenosyl-L-methionine-dependent met	94.41
PRK00274		272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.4
TIGR02469		124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.4
PRK13944		205	protein-L-isoaspartate O-methyltransferase; Provis	94.36
TIGR00755		253	ksgA dimethyladenosine transferase. Alternate name	94.32
PF13489		161	Methyltransf_23: Methyltransferase domain; PDB: 3J	94.05
PRK11805		307	N5-glutamine S-adenosyl-L-methionine-dependent met	93.93
TIGR03533		284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	93.81
PRK09489		342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	93.69
PRK13942		212	protein-L-isoaspartate O-methyltransferase; Provis	93.55
PRK08317		241	hypothetical protein; Provisional	93.48
COG3963		194	Phospholipid N-methyltransferase [Lipid metabolism	93.42
PF02384		311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.37
PRK00121		202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	93.31
PRK00312		212	pcm protein-L-isoaspartate O-methyltransferase; Re	93.31
PRK15001		378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	93.29
PTZ00338		294	dimethyladenosine transferase-like protein; Provis	93.07
TIGR02987		524	met_A_Alw26 type II restriction m6 adenine DNA met	92.94
TIGR03534		251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	92.91
PF13679		141	Methyltransf_32: Methyltransferase domain	92.89
PRK11705		383	cyclopropane fatty acyl phospholipid synthase; Pro	92.84
PF08241		95	Methyltransf_11: Methyltransferase domain; InterPr	92.79
PRK11088		272	rrmA 23S rRNA methyltransferase A; Provisional	92.77
PRK14967		223	putative methyltransferase; Provisional	92.75
TIGR00537		179	hemK_rel_arch HemK-related putative methylase. The	92.64
TIGR03704		251	PrmC_rel_meth putative protein-(glutamine-N5) meth	92.64
PRK07402		196	precorrin-6B methylase; Provisional	92.52
PRK00107		187	gidB 16S rRNA methyltransferase GidB; Reviewed	92.52
KOG0820		315	consensus Ribosomal RNA adenine dimethylase [RNA p	92.44
KOG1540		296	consensus Ubiquinone biosynthesis methyltransferas	92.43
PRK00377		198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	92.42
TIGR00080		215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	92.41
PRK00216		239	ubiE ubiquinone/menaquinone biosynthesis methyltra	92.26
TIGR00138		181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	91.96
PF07757		112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.84
PRK01544		506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.8
KOG2361		264	consensus Predicted methyltransferase [General fun	91.79
TIGR00536		284	hemK_fam HemK family putative methylases. The gene	91.77
TIGR00091		194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	91.72
PF13659		117	Methyltransf_26: Methyltransferase domain; PDB: 3G	91.67
COG2226		238	UbiE Methylase involved in ubiquinone/menaquinone	91.58
PRK10258		251	biotin biosynthesis protein BioC; Provisional	91.51
TIGR01934		223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	91.47
PLN02233		261	ubiquinone biosynthesis methyltransferase	91.3
smart00138		264	MeTrc Methyltransferase, chemotaxis proteins. Meth	91.11
PF05185		448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	90.55
PRK11207		197	tellurite resistance protein TehB; Provisional	90.39
PRK00811		283	spermidine synthase; Provisional	90.34
PTZ00098		263	phosphoethanolamine N-methyltransferase; Provision	90.25
PRK05785		226	hypothetical protein; Provisional	90.19
COG2263		198	Predicted RNA methylase [Translation, ribosomal st	90.08
TIGR00417		270	speE spermidine synthase. the SpeE subunit of sper	90.05
KOG2904		328	consensus Predicted methyltransferase [General fun	89.89
PRK04457		262	spermidine synthase; Provisional	89.53
TIGR01983		224	UbiG ubiquinone biosynthesis O-methyltransferase.	89.42
PLN02336		475	phosphoethanolamine N-methyltransferase	89.13
COG2518		209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	89.1
PF01135		209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	89.06
PRK11873		272	arsM arsenite S-adenosylmethyltransferase; Reviewe	88.72
TIGR00477		195	tehB tellurite resistance protein TehB. Part of a	88.67
PRK12335		287	tellurite resistance protein TehB; Provisional	88.63
PRK13943		322	protein-L-isoaspartate O-methyltransferase; Provis	88.59
cd02440		107	AdoMet_MTases S-adenosylmethionine-dependent methy	88.49
PF05206		259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	88.48
COG2890		280	HemK Methylase of polypeptide chain release factor	88.38
TIGR00406		288	prmA ribosomal protein L11 methyltransferase. Ribo	88.35
COG4106		257	Tam Trans-aconitate methyltransferase [General fun	87.94
PLN02585		315	magnesium protoporphyrin IX methyltransferase	87.91
PF06325		295	PrmA: Ribosomal protein L11 methyltransferase (Prm	87.71
PRK04266		226	fibrillarin; Provisional	87.4
PLN02490		340	MPBQ/MSBQ methyltransferase	87.32
TIGR03439		319	methyl_EasF probable methyltransferase domain, Eas	86.55
PLN02396		322	hexaprenyldihydroxybenzoate methyltransferase	86.44
COG4123		248	Predicted O-methyltransferase [General function pr	86.34
PF01596		205	Methyltransf_3: O-methyltransferase; InterPro: IPR	86.33
COG2264		300	PrmA Ribosomal protein L11 methylase [Translation,	86.19
PRK14968		188	putative methyltransferase; Provisional	85.97
smart00828		224	PKS_MT Methyltransferase in polyketide synthase (P	85.92
TIGR02081		194	metW methionine biosynthesis protein MetW. This pr	85.63
PRK00517		250	prmA ribosomal protein L11 methyltransferase; Revi	85.49
TIGR00438		188	rrmJ cell division protein FtsJ.	85.39
TIGR01444		143	fkbM_fam methyltransferase, FkbM family. Members o	85.32
COG2813		300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	85.3
PLN02781		234	Probable caffeoyl-CoA O-methyltransferase	84.81
PRK14966		423	unknown domain/N5-glutamine S-adenosyl-L-methionin	83.96
PF00891		241	Methyltransf_2: O-methyltransferase; InterPro: IPR	83.88
PRK11188		209	rrmJ 23S rRNA methyltransferase J; Provisional	83.44
KOG4300		252	consensus Predicted methyltransferase [General fun	83.17
PRK05134		233	bifunctional 3-demethylubiquinone-9 3-methyltransf	83.0
KOG0822		649	consensus Protein kinase inhibitor [Cell cycle con	82.68
PLN02366		308	spermidine synthase	82.4
COG2519		256	GCD14 tRNA(1-methyladenosine) methyltransferase an	82.37
TIGR00452		314	methyltransferase, putative. Known examples to dat	82.24
PF05401		201	NodS: Nodulation protein S (NodS); InterPro: IPR00	81.46
PRK10909		199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	81.22
PF10294		173	Methyltransf_16: Putative methyltransferase; Inter	80.74
PRK14121		390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	80.7
PRK06922		677	hypothetical protein; Provisional	80.53
PF01209		233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	80.51

>COG1565 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=5.6e-92  Score=713.19  Aligned_cols=350  Identities=34%  Similarity=0.547  Sum_probs=307.5

Q ss_pred             HHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEE
Q 011546           85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL  164 (483)
Q Consensus        85 ~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~~I  164 (483)
                      .+..+|+..|+.. |||||++||++|||+|++|||+++.+||++||||||||||++|||+||.||+++|+++|.|.++.|
T Consensus         3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l   81 (370)
T COG1565           3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL   81 (370)
T ss_pred             cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence            4677888888887 999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EEEcCCcchhHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeeccccc
Q 011546          165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE  243 (483)
Q Consensus       165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sl~  243 (483)
                      ||||||+|+||.|||++++ ..|++++.++|+|||+||.||++||++|+...                  ..++|+..++
T Consensus        82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e  143 (370)
T COG1565          82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE  143 (370)
T ss_pred             EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence            9999999999999999995 58999999999999999999999999998642                  2688988889


Q ss_pred             cCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEEc
Q 011546          244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVC  323 (483)
Q Consensus       244 ~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~v~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei~  323 (483)
                      ++|.++++||||||||||||||||+++++.|+|++|.-+.++++.+- .+....-..++..    .......+|+++|+|
T Consensus       144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~-~~~~~~~~~~ll~----l~~~~~~~g~~~E~~  218 (370)
T COG1565         144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS-HAINELIDEALLP----LDAPEAEDGYILEVS  218 (370)
T ss_pred             hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec-cccccchhhhccC----cccccccCCceeeeC
Confidence            99998899999999999999999999999999999964455565553 1111110001111    111235689999999


Q ss_pred             hhHHHHHHHHHHHhccCCeEEEEEeCCCCCC--------cCCccceeccccccCCCCCCCccccccccCHHHHHHHHHHh
Q 011546          324 AKAMELTGAMAKRIGSDGGGALIIDYGLNGV--------VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA  395 (483)
Q Consensus       324 ~~a~~~l~~la~~l~~~~G~~LiIDYG~~~~--------~~gTLr~yr~H~~~dpl~~PG~~DITAhVdF~~L~~~a~~~  395 (483)
                      |++.+|++.|++++++  |++|+|||||+..        .++|+++|++|.++|||.+||++||||||||++|+.+++++
T Consensus       219 ~a~~~~l~~ia~~L~~--G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~  296 (370)
T COG1565         219 PAREALLKAIAERLER--GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAA  296 (370)
T ss_pred             HHHHHHHHHHHHHHhh--CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHc
Confidence            9999999999999998  9999999999542        34566678999999999999999999999999999999998


Q ss_pred             cCceeeeccccHHHHHHhCChHHHHHHHHhcCCHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCCCCcccccEEEEecCC
Q 011546          396 SERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKN  475 (483)
Q Consensus       396 g~g~~~~g~~tQ~~FL~~lGI~~rl~~L~~~~~~~~~~~~~~~~~rLi~~~~~~~~~~~~~~~P~~MGe~FKVl~i~~k~  475 (483)
                        |+++.|+.+|+.||++|||.+|++.+....++++...++++++||++              |.+|||+||||+++++.
T Consensus       297 --g~~~~~~~tQ~~FLl~~Gl~~rl~~l~~~~~~~~~~~~~~~v~rLi~--------------p~~MGelFkVl~~~k~~  360 (370)
T COG1565         297 --GLEVLGFKTQGDFLLDLGLLERLATLSAGKDDARYLKIAAQVKRLIS--------------PGGMGELFKVLAFGKKL  360 (370)
T ss_pred             --CCcccchhhHHHHHHhccHHHHHHHHhcCCChHHHHHHHHHHHHhhC--------------chhhccceeeeeecccc
Confidence              69999999999999999999999999766677888999999999999              99999999999996554


Q ss_pred             C
Q 011546          476 Q  476 (483)
Q Consensus       476 ~  476 (483)
                      .
T Consensus       361 ~  361 (370)
T COG1565         361 K  361 (370)
T ss_pred             c
Confidence            4

>KOG2901 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function	Back alignment and domain information

>PHA03412 putative methyltransferase; Provisional	Back alignment and domain information

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases	Back alignment and domain information

>TIGR00740 methyltransferase, putative	Back alignment and domain information

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e	Back alignment and domain information

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional	Back alignment and domain information

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional	Back alignment and domain information

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase	Back alignment and domain information

>PRK01683 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A	Back alignment and domain information

>PLN02244 tocopherol O-methyltransferase	Back alignment and domain information

>PHA03411 putative methyltransferase; Provisional	Back alignment and domain information

>PRK06202 hypothetical protein; Provisional	Back alignment and domain information

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>smart00650 rADc Ribosomal RNA adenine dimethylases	Back alignment and domain information

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A	Back alignment and domain information

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase	Back alignment and domain information

>TIGR03438 probable methyltransferase	Back alignment and domain information

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A	Back alignment and domain information

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated	Back alignment and domain information

>TIGR02072 BioC biotin biosynthesis protein BioC	Back alignment and domain information

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated	Back alignment and domain information

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase	Back alignment and domain information

>PRK14103 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed	Back alignment and domain information

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	Back alignment and domain information

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional	Back alignment and domain information

>TIGR00755 ksgA dimethyladenosine transferase	Back alignment and domain information

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C	Back alignment and domain information

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	Back alignment and domain information

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific	Back alignment and domain information

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional	Back alignment and domain information

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional	Back alignment and domain information

>PRK08317 hypothetical protein; Provisional	Back alignment and domain information

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]	Back alignment and domain information

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2	Back alignment and domain information

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed	Back alignment and domain information

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed	Back alignment and domain information

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional	Back alignment and domain information

>PTZ00338 dimethyladenosine transferase-like protein; Provisional	Back alignment and domain information

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	Back alignment and domain information

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific	Back alignment and domain information

>PF13679 Methyltransf_32: Methyltransferase domain	Back alignment and domain information

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional	Back alignment and domain information

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional	Back alignment and domain information

>PRK14967 putative methyltransferase; Provisional	Back alignment and domain information

>TIGR00537 hemK_rel_arch HemK-related putative methylase	Back alignment and domain information

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	Back alignment and domain information

>PRK07402 precorrin-6B methylase; Provisional	Back alignment and domain information

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed	Back alignment and domain information

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]	Back alignment and domain information

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]	Back alignment and domain information

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional	Back alignment and domain information

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase	Back alignment and domain information

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed	Back alignment and domain information

>TIGR00138 gidB 16S rRNA methyltransferase GidB	Back alignment and domain information

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []	Back alignment and domain information

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed	Back alignment and domain information

>KOG2361 consensus Predicted methyltransferase [General function prediction only]	Back alignment and domain information

>TIGR00536 hemK_fam HemK family putative methylases	Back alignment and domain information

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase	Back alignment and domain information

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A	Back alignment and domain information

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PRK10258 biotin biosynthesis protein BioC; Provisional	Back alignment and domain information

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases	Back alignment and domain information

>PLN02233 ubiquinone biosynthesis methyltransferase	Back alignment and domain information

>smart00138 MeTrc Methyltransferase, chemotaxis proteins	Back alignment and domain information

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []	Back alignment and domain information

>PRK11207 tellurite resistance protein TehB; Provisional	Back alignment and domain information

>PRK00811 spermidine synthase; Provisional	Back alignment and domain information

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional	Back alignment and domain information

>PRK05785 hypothetical protein; Provisional	Back alignment and domain information

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00417 speE spermidine synthase	Back alignment and domain information

>KOG2904 consensus Predicted methyltransferase [General function prediction only]	Back alignment and domain information

>PRK04457 spermidine synthase; Provisional	Back alignment and domain information

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase	Back alignment and domain information

>PLN02336 phosphoethanolamine N-methyltransferase	Back alignment and domain information

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2	Back alignment and domain information

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed	Back alignment and domain information

>TIGR00477 tehB tellurite resistance protein TehB	Back alignment and domain information

>PRK12335 tellurite resistance protein TehB; Provisional	Back alignment and domain information

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional	Back alignment and domain information

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)	Back alignment and domain information

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []	Back alignment and domain information

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00406 prmA ribosomal protein L11 methyltransferase	Back alignment and domain information

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]	Back alignment and domain information

>PLN02585 magnesium protoporphyrin IX methyltransferase	Back alignment and domain information

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences	Back alignment and domain information

>PRK04266 fibrillarin; Provisional	Back alignment and domain information

>PLN02490 MPBQ/MSBQ methyltransferase	Back alignment and domain information

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family	Back alignment and domain information

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase	Back alignment and domain information

>COG4123 Predicted O-methyltransferase [General function prediction only]	Back alignment and domain information

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases	Back alignment and domain information

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK14968 putative methyltransferase; Provisional	Back alignment and domain information

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes	Back alignment and domain information

>TIGR02081 metW methionine biosynthesis protein MetW	Back alignment and domain information

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed	Back alignment and domain information

>TIGR00438 rrmJ cell division protein FtsJ	Back alignment and domain information

>TIGR01444 fkbM_fam methyltransferase, FkbM family	Back alignment and domain information

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02781 Probable caffeoyl-CoA O-methyltransferase	Back alignment and domain information

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional	Back alignment and domain information

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional	Back alignment and domain information

>KOG4300 consensus Predicted methyltransferase [General function prediction only]	Back alignment and domain information

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional	Back alignment and domain information

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PLN02366 spermidine synthase	Back alignment and domain information

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00452 methyltransferase, putative	Back alignment and domain information

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins	Back alignment and domain information

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional	Back alignment and domain information

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases	Back alignment and domain information

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional	Back alignment and domain information

>PRK06922 hypothetical protein; Provisional	Back alignment and domain information

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		483
1zkd_A		387	X-ray Structure Of The Putative Protein Q6n1p6 From		8e-59
4f3n_A		432	High Resolution Native Crystal Structure Of An Unch		8e-14

>pdb|1ZKD|A Chain A, X-ray Structure Of The Putative Protein Q6n1p6 From Rhodopseudomonas Palustris At The Resolution 2.1 A , Northeast Structural Genomics Consortium Target Rpr58 Length = 387

Back alignment and structure

Iteration: 1

Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 186/375 (49%), Gaps = 50/375 (13%) Query: 83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142 ++ L +K +IK GP V Y E L +P+ G+Y+ RD G EGDF TSPE+SQ FG Sbjct: 4 QTALATEIKRLIKA-AGPXPVWRYXELCLGHPEHGYYVTRDPLGREGDFTTSPEISQXFG 62 Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 E++G+W+ +W+ +P + L+E+GPGRGT AD LR +SL +HLVE +P Sbjct: 63 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTXXADALRALRVLPILYQSLSVHLVEINPV 122 Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262 L++ Q L + + WH + E VP G P +I+A+E++D L Sbjct: 123 LRQKQQTLLAGIRN-------------------IHWHDSFEDVPEG-PAVILANEYFDVL 162 Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTP---ATLFLLQRC-------KWAADK 312 P+HQ K GW E++++I F ++ P P A L L R +W D Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAVFEWRPDT 222 Query: 313 ELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYG-LNGVVTDSLQAIRKHKFVDLF 371 E+ K+ A R+ GG ALIIDYG L V D+ QAI H + D Sbjct: 223 EILKI----------------ASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPL 266 Query: 372 DNPGSADLSAYVDFXXXXXXXXXXXXRVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQ 431 +PG ADL+A+VDF R HGP+TQ FL LGI R SL T + Sbjct: 267 QHPGRADLTAHVDFDALGRAAESIGAR--AHGPVTQGAFLKRLGIETRALSLXAKATPQV 324 Query: 432 AESLRTGYWSLVGEG 446 +E + L GEG Sbjct: 325 SEDIAGALQRLTGEG 339

PyMOL of 1zkd

>pdb|4F3N|A Chain A, High Resolution Native Crystal Structure Of An Uncharacterized Acr, Cog1565 Superfamily Protein From Burkholderia Thailandensis, Solved By Iodide Ion Sad Length = 432

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		483
1zkd_A		387	DUF185; NESG, RPR58, structural genomics, PSI, pro	1e-145
4f3n_A		432	Uncharacterized ACR, COG1565 superfamily; structur	1e-120
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 Length = 387	Back alignment and structure

 Score =  421 bits (1083), Expect = e-145
 Identities = 137/402 (34%), Positives = 199/402 (49%), Gaps = 42/402 (10%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 4   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 62

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 63  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 122

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 123 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 162

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV 322
           P+HQ  K   GW E++++I       F ++  P P    LL      +          E 
Sbjct: 163 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLARLSPPGAV----FEW 218

Query: 323 CAKAMELTGAMAKRIGSDGGGALIIDYG-LNGVVTDSLQAIRKHKFVDLFDNPGSADLSA 381
                 L   +A R+   GG ALIIDYG L   V D+ QAI  H + D   +PG ADL+A
Sbjct: 219 RPDTEILK--IASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTA 276

Query: 382 YVDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWS 441
           +VDF ++  +AE        HGP+TQ  FL  LGI  R  SL+   T + +E +      
Sbjct: 277 HVDFDALGRAAESIG--ARAHGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQR 334

Query: 442 LVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE 483
           L GEG               MG+ +  + + +      V   
Sbjct: 335 LTGEGRG------------AMGSMFKVIGVSDPKIETLVALS 364

PyMOL of 1zkd

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} Length = 432	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		483
1zkd_A		387	DUF185; NESG, RPR58, structural genomics, PSI, pro	100.0
4f3n_A		432	Uncharacterized ACR, COG1565 superfamily; structur	100.0
4gek_A		261	TRNA (CMO5U34)-methyltransferase; structural genom	97.41
3fut_A		271	Dimethyladenosine transferase; methyltransferase,	96.09
4htf_A		285	S-adenosylmethionine-dependent methyltransferase;	95.99
1kpg_A		287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.93
1xtp_A		254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	95.92
3gru_A		295	Dimethyladenosine transferase; rossman fold, ribos	95.9
3bus_A		273	REBM, methyltransferase; rebeccamycin synthesis; H	95.87
3hem_A		302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	95.81
3tqs_A		255	Ribosomal RNA small subunit methyltransferase A; p	95.78
2aot_A		292	HMT, histamine N-methyltransferase; classic methyl	95.78
2o57_A		297	Putative sarcosine dimethylglycine methyltransfera	95.77
1pjz_A		203	Thiopurine S-methyltransferase; polymorphism, S-ad	95.76
3gjy_A		317	Spermidine synthase; APC62791, structural genomics	95.71
2f8l_A		344	Hypothetical protein LMO1582; structural genomics,	95.69
2fk8_A		318	Methoxy mycolic acid synthase 4; S-adenosylmethion	95.63
3lcc_A		235	Putative methyl chloride transferase; halide methy	95.62
3hnr_A		220	Probable methyltransferase BT9727_4108; structural	95.55
3bxo_A		239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.53
3dlc_A		219	Putative S-adenosyl-L-methionine-dependent methylt	95.48
3jwg_A		219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	95.47
1wy7_A		207	Hypothetical protein PH1948; seven-stranded beta s	95.43
3iv6_A		261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.39
4dzr_A		215	Protein-(glutamine-N5) methyltransferase, release	95.31
3jwh_A		217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	95.29
3khk_A		544	Type I restriction-modification system methylation	95.16
3gu3_A		284	Methyltransferase; alpha-beta protein, structural	95.16
2gs9_A		211	Hypothetical protein TT1324; methyl transferase, s	95.15
2p35_A		259	Trans-aconitate 2-methyltransferase; SAM dependent	95.15
3gwz_A		369	MMCR; methyltransferase, mitomycin, S-adenosyl met	95.12
1ne2_A		200	Hypothetical protein TA1320; structural genomics,	95.09
1vl5_A		260	Unknown conserved protein BH2331; putative methylt	95.05
3bkw_A		243	MLL3908 protein, S-adenosylmethionine dependent me	95.03
3i9f_A		170	Putative type 11 methyltransferase; structural gen	95.03
3lkd_A		542	Type I restriction-modification system methyltrans	95.0
2yxe_A		215	Protein-L-isoaspartate O-methyltransferase; rossma	94.99
3dh0_A		219	SAM dependent methyltransferase; cystal structure,	94.96
3ujc_A		266	Phosphoethanolamine N-methyltransferase; parasite;	94.96
3ofk_A		216	Nodulation protein S; NODS, N-methyltransferase, S	94.92
3ccf_A		279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.89
3l8d_A		242	Methyltransferase; structural genomics, PSI, nysgr	94.86
3bkx_A		275	SAM-dependent methyltransferase; YP_807781.1, cycl	94.83
1x19_A		359	CRTF-related protein; methyltransferase, bacterioc	94.76
2pbf_A		227	Protein-L-isoaspartate O-methyltransferase beta-A	94.75
1wzn_A		252	SAM-dependent methyltransferase; structural genomi	94.75
3lbf_A		210	Protein-L-isoaspartate O-methyltransferase; modifi	94.74
1vbf_A		231	231AA long hypothetical protein-L-isoaspartate O-	94.71
3ou2_A		218	SAM-dependent methyltransferase; O-methyltransfera	94.71
3dtn_A		234	Putative methyltransferase MM_2633; structural gen	94.7
3uzu_A		279	Ribosomal RNA small subunit methyltransferase A; s	94.68
2xvm_A		199	Tellurite resistance protein TEHB; antibiotic resi	94.65
3pfg_A		263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.65
3e23_A		211	Uncharacterized protein RPA2492; alpha-beta protei	94.62
3sm3_A		235	SAM-dependent methyltransferases; NESG, structural	94.61
1qam_A		244	ERMC' methyltransferase; rRNA methyltransferase ER	94.58
3p9n_A		189	Possible methyltransferase (methylase); RV2966C, a	94.57
1r18_A		227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.55
3hm2_A		178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	94.51
2okc_A		445	Type I restriction enzyme stysji M protein; NP_813	94.5
3h2b_A		203	SAM-dependent methyltransferase; alpha-beta protei	94.48
2yqz_A		263	Hypothetical protein TTHA0223; RNA methyltransfera	94.47
2p7i_A		250	Hypothetical protein; putative methyltransferase,	94.46
3mgg_A		276	Methyltransferase; NYSGXRC, PSI-II, protein struct	94.4
3dli_A		240	Methyltransferase; PSI-II, NYSGXRC, structural gen	94.34
2pxx_A		215	Uncharacterized protein MGC2408; structural genomi	94.3
3g5l_A		253	Putative S-adenosylmethionine dependent methyltran	94.3
3cgg_A		195	SAM-dependent methyltransferase; NP_600671.1, meth	94.24
3vc1_A		312	Geranyl diphosphate 2-C-methyltransferase; rossman	94.21
2yxd_A		183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	94.18
1qyr_A		252	KSGA, high level kasugamycin resistance protein, S	94.16
3i53_A		332	O-methyltransferase; CO-complex, rossmann-like fol	94.14
1y8c_A		246	S-adenosylmethionine-dependent methyltransferase;	94.12
3grz_A		205	L11 mtase, ribosomal protein L11 methyltransferase	94.12
3evz_A		230	Methyltransferase; NYSGXRC, NEW YORK SGX research	94.07
1ri5_A		298	MRNA capping enzyme; methyltransferase, M7G, messe	94.05
1jsx_A		207	Glucose-inhibited division protein B; methyltransf	94.02
3orh_A		236	Guanidinoacetate N-methyltransferase; structura ge	94.0
3e05_A		204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	93.99
3ocj_A		305	Putative exported protein; structural genomics, PS	93.95
3f4k_A		257	Putative methyltransferase; structural genomics, P	93.88
3lst_A		348	CALO1 methyltransferase; calicheamicin, enediyne,	93.83
1zq9_A		285	Probable dimethyladenosine transferase; SGC, struc	93.81
1tw3_A		360	COMT, carminomycin 4-O-methyltransferase; anthracy	93.78
1jg1_A		235	PIMT;, protein-L-isoaspartate O-methyltransferase;	93.73
3m70_A		286	Tellurite resistance protein TEHB homolog; structu	93.7
4fsd_A		383	Arsenic methyltransferase; rossmann fold; 1.75A {C	93.68
2ex4_A		241	Adrenal gland protein AD-003; methyltransferase, s	93.65
2gb4_A		252	Thiopurine S-methyltransferase; 18204406, thiopuri	93.65
1nkv_A		256	Hypothetical protein YJHP; structural genomics, PS	93.61
3mcz_A		352	O-methyltransferase; adomet_mtases, S-adenosylmeth	93.6
4e2x_A		416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	93.58
3mti_A		185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	93.58
1dus_A		194	MJ0882; hypothetical protein, methanococcus jannas	93.58
1xxl_A		239	YCGJ protein; structural genomics, protein structu	93.58
3kkz_A		267	Uncharacterized protein Q5LES9; putative methyltra	93.52
3eey_A		197	Putative rRNA methylase; rRNA methylation, S-adeno	93.4
1qzz_A		374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	93.36
3ftd_A		249	Dimethyladenosine transferase; KSGA, rossmann-like	93.31
1l3i_A		192	Precorrin-6Y methyltransferase/putative decarboxyl	93.3
2p8j_A		209	S-adenosylmethionine-dependent methyltransferase;	93.27
3u81_A		221	Catechol O-methyltransferase; neurotransmitter deg	93.24
3m33_A		226	Uncharacterized protein; structural genomics, PSI-	93.17
1u2z_A		433	Histone-lysine N-methyltransferase, H3 lysine-79 s	93.16
2ih2_A		421	Modification methylase TAQI; DNA, DNA methyltransf	93.05
3bwc_A		304	Spermidine synthase; SAM, SGPP, structura genomics	93.04
3g5t_A		299	Trans-aconitate 3-methyltransferase; structural ge	93.01
2esr_A		177	Methyltransferase; structural genomics, hypothetic	92.97
2gpy_A		233	O-methyltransferase; structural genomics, PSI, pro	92.93
2fhp_A		187	Methylase, putative; alpha-beta-alpha sandwich, st	92.89
1iy9_A		275	Spermidine synthase; rossmann fold, structural gen	92.8
3dr5_A		221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	92.79
2b3t_A		276	Protein methyltransferase HEMK; translation termin	92.78
3adn_A		294	Spermidine synthase; aminopropyltransferase, polya	92.78
1ve3_A		227	Hypothetical protein PH0226; dimer, riken structur	92.76
3cc8_A		230	Putative methyltransferase; structural genomics, j	92.66
2avd_A		229	Catechol-O-methyltransferase; structural genomics,	92.65
2ar0_A		541	M.ecoki, type I restriction enzyme ecoki M protein	92.62
2ip2_A		334	Probable phenazine-specific methyltransferase; pyo	92.61
3tr6_A		225	O-methyltransferase; cellular processes; HET: SAH;	92.59
3uwp_A		438	Histone-lysine N-methyltransferase, H3 lysine-79;	92.58
3mb5_A		255	SAM-dependent methyltransferase; RNA methyltransfe	92.49
1zx0_A		236	Guanidinoacetate N-methyltransferase; structural g	92.48
1p91_A		269	Ribosomal RNA large subunit methyltransferase A; R	92.48
3c3p_A		210	Methyltransferase; NP_951602.1, structural genomic	92.47
3thr_A		293	Glycine N-methyltransferase; GNMT, folate, methylt	92.47
3duw_A		223	OMT, O-methyltransferase, putative; alternating of	92.45
3c3y_A		237	Pfomt, O-methyltransferase; plant secondary metabo	92.44
1sui_A		247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	92.42
3fzg_A		200	16S rRNA methylase; methyltransferase, plasmid, tr	92.42
3e8s_A		227	Putative SAM dependent methyltransferase; NP_74470	92.41
4dcm_A		375	Ribosomal RNA large subunit methyltransferase G; 2	92.4
1dl5_A		317	Protein-L-isoaspartate O-methyltransferase; isoasp	92.39
2o07_A		304	Spermidine synthase; structural genomics, structur	92.38
2i7c_A		283	Spermidine synthase; transferase, structural genom	92.32
2hnk_A		239	SAM-dependent O-methyltransferase; modified rossma	92.26
3njr_A		204	Precorrin-6Y methylase; methyltransferase, decarbo	92.24
3ntv_A		232	MW1564 protein; rossmann fold, putative methyltran	92.2
1inl_A		296	Spermidine synthase; beta-barrel, rossman fold, st	92.16
1i9g_A		280	Hypothetical protein RV2118C; mtase, adoMet, cryst	92.16
1ws6_A		171	Methyltransferase; structural genomics, riken stru	92.1
3dmg_A		381	Probable ribosomal RNA small subunit methyltransf;	92.09
2fca_A		213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	92.08
2pwy_A		258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	92.0
1nv8_A		284	HEMK protein; class I adoMet-dependent methyltrans	91.96
3mq2_A		218	16S rRNA methyltransferase; methyltranferase, ribo	91.93
1yzh_A		214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	91.92
2h1r_A		299	Dimethyladenosine transferase, putative; SGC toron	91.92
3tfw_A		248	Putative O-methyltransferase; PSI-biology, nysgrc,	91.89
1xj5_A		334	Spermidine synthase 1; structural genomics, protei	91.82
3gdh_A		241	Trimethylguanosine synthase homolog; M7G, CAP, dim	91.8
1fbn_A		230	MJ fibrillarin homologue; MJ proteins, ribosomal R	91.78
3dxy_A		218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	91.78
2r3s_A		335	Uncharacterized protein; methyltransferase domain,	91.77
2avn_A		260	Ubiquinone/menaquinone biosynthesis methyltransfe	91.67
1o54_A		277	SAM-dependent O-methyltransferase; TM0748, structu	91.66
3ege_A		261	Putative methyltransferase from antibiotic biosyn	91.6
3ufb_A		530	Type I restriction-modification system methyltran	91.55
2yvl_A		248	TRMI protein, hypothetical protein; tRNA, methyltr	91.51
1g8a_A		227	Fibrillarin-like PRE-rRNA processing protein; rRNA	91.39
1uir_A		314	Polyamine aminopropyltransferase; spermidien synth	91.39
2kw5_A		202	SLR1183 protein; structural genomics, northeast st	91.37
3g2m_A		299	PCZA361.24; SAM-dependent methyltransferase, glyco	91.27
1xdz_A		240	Methyltransferase GIDB; MCSG, protein structure in	91.26
3q87_B		170	N6 adenine specific DNA methylase; SAM-methyltrans	91.22
3d2l_A		243	SAM-dependent methyltransferase; ZP_00538691.1, st	91.16
3bgv_A		313	MRNA CAP guanine-N7 methyltransferase; alternative	91.15
4df3_A		233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	91.04
1i4w_A		353	Mitochondrial replication protein MTF1; mitochondr	90.99
1i1n_A		226	Protein-L-isoaspartate O-methyltransferase; S-aden	90.95
1nt2_A		210	Fibrillarin-like PRE-rRNA processing protein; adeM	90.84
2b2c_A		314	Spermidine synthase; beta-alpha, transferase; 2.50	90.83
3cbg_A		232	O-methyltransferase; cyanobacterium; HET: SAH FER	90.78
2pt6_A		321	Spermidine synthase; transferase, structural genom	90.75
1mjf_A		281	Spermidine synthase; spermidine synthetase, struct	90.73
1ej0_A		180	FTSJ; methyltransferase, adoMet, adenosyl methioni	90.65
2pjd_A		343	Ribosomal RNA small subunit methyltransferase C; g	90.62
3reo_A		368	(ISO)eugenol O-methyltransferase; directed evoluti	90.47
2cmg_A		262	Spermidine synthase; transferase, putrescine amino	90.43
3g07_A		292	7SK snRNA methylphosphate capping enzyme; structur	90.07
1o9g_A		250	RRNA methyltransferase; antibiotic resistance, Se-	90.0
3ckk_A		235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	89.95
2h00_A		254	Methyltransferase 10 domain containing protein; st	89.77
2ozv_A		260	Hypothetical protein ATU0636; structural genomics,	89.65
3kr9_A		225	SAM-dependent methyltransferase; class I rossmann-	89.65
3tm4_A		373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	89.58
2ipx_A		233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	89.28
2plw_A		201	Ribosomal RNA methyltransferase, putative; malaria	89.18
2vdv_E		246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	89.14
3r3h_A		242	O-methyltransferase, SAM-dependent; structural gen	89.1
2nxc_A		254	L11 mtase, ribosomal protein L11 methyltransferase	89.07
1yb2_A		275	Hypothetical protein TA0852; structural genomics,	88.94
2ift_A		201	Putative methylase HI0767; NESG, Y767_haein, struc	88.93
3id6_C		232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	88.9
3ggd_A		245	SAM-dependent methyltransferase; YP_325210.1, stru	88.87
4azs_A		569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	88.86
1fp1_D		372	Isoliquiritigenin 2'-O-methyltransferase; protein-	88.76
1fp2_A		352	Isoflavone O-methyltransferase; protein-product co	88.48
3g89_A		249	Ribosomal RNA small subunit methyltransferase G; 1	88.48
3lec_A		230	NADB-rossmann superfamily protein; PSI, MCSG, stru	88.27
2y1w_A		348	Histone-arginine methyltransferase CARM1; histone	88.25
2fpo_A		202	Methylase YHHF; structural genomics, putative meth	88.24
2vdw_A		302	Vaccinia virus capping enzyme D1 subunit; nucleoti	88.08
3dp7_A		363	SAM-dependent methyltransferase; structural genomi	87.86
2bm8_A		236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	87.85
2b25_A		336	Hypothetical protein; structural genomics, methyl	87.76
3bzb_A		281	Uncharacterized protein; RED ALGA, protein structu	87.75
3gnl_A		244	Uncharacterized protein, DUF633, LMOF2365_1472; st	87.71
3p2e_A		225	16S rRNA methylase; methyltransferase, transferase	87.54
1yub_A		245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	87.52
1af7_A		274	Chemotaxis receptor methyltransferase CHER; chemot	86.9
3opn_A		232	Putative hemolysin; structural genomics, PSI-2, pr	86.9
4hg2_A		257	Methyltransferase type 11; structural genomics, PS	86.88
1zg3_A		358	Isoflavanone 4'-O-methyltransferase; rossman fold,	86.83
3p9c_A		364	Caffeic acid O-methyltransferase; S-adenosylmethio	86.77
3k0b_A		393	Predicted N6-adenine-specific DNA methylase; methy	86.62
3s1s_A		878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	86.41
3ldu_A		385	Putative methylase; structural genomics, PSI-2, pr	86.36
2fyt_A		340	Protein arginine N-methyltransferase 3; structural	86.35
2i62_A		265	Nicotinamide N-methyltransferase; structural genom	86.13
4gqb_A		637	Protein arginine N-methyltransferase 5; TIM barrel	85.87
3htx_A		950	HEN1; HEN1, small RNA methyltransferase, protein-R	85.85
2nyu_A		196	Putative ribosomal RNA methyltransferase 2; SAM, s	85.84
3fpf_A		298	Mtnas, putative uncharacterized protein; thermonic	85.79
3lpm_A		259	Putative methyltransferase; structural genomics, p	85.69
2a14_A		263	Indolethylamine N-methyltransferase; SGC,INMT, str	85.19
3ldg_A		384	Putative uncharacterized protein SMU.472; YPSC, me	85.12
2qfm_A		364	Spermine synthase; spermidine aminopropyltransfera	84.91
1g6q_1		328	HnRNP arginine N-methyltransferase; SAM-binding do	83.62
4a6d_A		353	Hydroxyindole O-methyltransferase; melatonin, circ	83.07
3frh_A		253	16S rRNA methylase; methyltransferase domain, heli	82.89
3r0q_C		376	Probable protein arginine N-methyltransferase 4.2;	82.73
3q7e_A		349	Protein arginine N-methyltransferase 1; HET: SAH;	82.49
2g72_A		289	Phenylethanolamine N-methyltransferase; HET: SAM F	82.29
3tma_A		354	Methyltransferase; thump domain; 2.05A {Thermus th	82.11
3ajd_A		274	Putative methyltransferase MJ0026; tRNA, M5C, ross	81.15
1vlm_A		219	SAM-dependent methyltransferase; possible histamin	80.68
2qe6_A		274	Uncharacterized protein TFU_2867; putative methylt	80.62
2k4m_A		153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	80.53

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52	Back alignment and structure

Probab=100.00  E-value=3.4e-101  Score=800.07  Aligned_cols=360  Identities=37%  Similarity=0.676  Sum_probs=321.7

Q ss_pred             ChHHHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCC
Q 011546           82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNR  161 (483)
Q Consensus        82 ~~~~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~  161 (483)
                      ++++|.++|++.|+.+ |||||++||++|||||++|||+++.+||+.|||||||||||+|||+||+|++++|+.+|.|.+
T Consensus         3 ~~~~L~~~i~~~I~~~-G~i~f~~fM~~aLy~P~~GYY~~~~~~G~~GDF~Tapeis~~FGe~la~~~~~~w~~~g~p~~   81 (387)
T 1zkd_A            3 DQTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQT   81 (387)
T ss_dssp             CSSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             chHHHHHHHHHHHHhc-CCeeHHHHHHHHhcCCCCcccCCCCCCCCCCCeeCCCchHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            3468999999999987 899999999999999999999998899999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeeccc
Q 011546          162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAA  241 (483)
Q Consensus       162 ~~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~s  241 (483)
                      ++|||+|||+|+||.|||++++..|+++++++|+|||+||.||++|+++|+.+                  + +|.|+++
T Consensus        82 ~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~------------------~-~v~W~~~  142 (387)
T 1zkd_A           82 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI------------------R-NIHWHDS  142 (387)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC------------------S-SEEEESS
T ss_pred             cEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC------------------C-CeEEeCC
Confidence            99999999999999999999998899999999999999999999999999652                  1 6999999


Q ss_pred             cccCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEcCCCceEEEeCCCCChhhH-HHHHHhhhhhcccCCCCcEE
Q 011546          242 LEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATL-FLLQRCKWAADKELEKLEHI  320 (483)
Q Consensus       242 l~~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~v~~p~~~~~~~-~l~~~~~~~~~~~~~~g~~~  320 (483)
                      ++++|.+ |+||||||||||||||+|++++++|+|++|+++++++|+|+..|.+++... ++....     ...++|+++
T Consensus       143 l~~lp~~-~~~viANE~fDAlPv~~~~~~~~~w~E~~V~~~~~g~~~~~~~~~~~~~~~~~l~~~~-----~~~~~G~~~  216 (387)
T 1zkd_A          143 FEDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPLA-----RLSPPGAVF  216 (387)
T ss_dssp             GGGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGGG-----GGCCTTCEE
T ss_pred             hhhcCCC-CeEEEeccccccCceEEEEecCCeEEEEEEEECCCCcEEEecCCCCchhhhhhhhhhh-----ccCCCCcEE
Confidence            9999987 999999999999999999999999999999998888899999887665321 222111     135789999


Q ss_pred             EEchhHHHHHHHHHHHhccCCeEEEEEeCCCCCC-cCCccceeccccccCCCCCCCccccccccCHHHHHHHHHHhcCce
Q 011546          321 EVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGV-VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERV  399 (483)
Q Consensus       321 Ei~~~a~~~l~~la~~l~~~~G~~LiIDYG~~~~-~~gTLr~yr~H~~~dpl~~PG~~DITAhVdF~~L~~~a~~~g~g~  399 (483)
                      |||+++.  +++|+++|.+++|++|+||||+... .+|||||||+|+.+|||.+||++||||||||++|+++++++  |+
T Consensus       217 Ei~~~~~--~~~ia~~l~~~~G~~L~IDYG~~~~~~~gTL~~~~~H~~~dpl~~pG~~DiTAhVdF~aL~~a~~~~--G~  292 (387)
T 1zkd_A          217 EWRPDTE--ILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESI--GA  292 (387)
T ss_dssp             EECCSHH--HHHHHHHHHHHCEEEEEEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHT--TC
T ss_pred             EeCHHHH--HHHHHHHHhhCCceEEEEeCCCCCCCCCCchhhhhCcccCCcccccCccccCCccCHHHHHHHHHHc--CC
Confidence            9999888  9999999998889999999999864 58999999999999999999999999999999999999987  69


Q ss_pred             eeeccccHHHHHHhCChHHHHHHHHhcCCHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCCCCcccccEEEEecCCCCCC
Q 011546          400 SVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVP  479 (483)
Q Consensus       400 ~~~g~~tQ~~FL~~lGI~~rl~~L~~~~~~~~~~~~~~~~~rLi~~~~~~~~~~~~~~~P~~MGe~FKVl~i~~k~~~~~  479 (483)
                      .+.|+++|++||++|||.+|++.|.++++++++.+++++++||++.|            |++||++||||++++++.+.|
T Consensus       293 ~~~g~~~Q~~FL~~lGi~~rl~~l~~~~~~~~~~~~~~a~~rL~~~~------------p~~MG~~FKvl~~~~~~~~~~  360 (387)
T 1zkd_A          293 RAHGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQRLTGEG------------RGAMGSMFKVIGVSDPKIETL  360 (387)
T ss_dssp             EEEEEEEHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHHCEE------------TTEETTTEEEEEEECTTCCCC
T ss_pred             cEeceecHHHHHHHCCHHHHHHHHHccCCHHHHHHHHHHHHHHhccC------------hhhhhhhceEEEEccCCCCCC
Confidence            99999999999999999999999988767777889999999999855            899999999999988788788


Q ss_pred             CCCC
Q 011546          480 VPFE  483 (483)
Q Consensus       480 ~gF~  483 (483)
                      +||.
T Consensus       361 ~gf~  364 (387)
T 1zkd_A          361 VALS  364 (387)
T ss_dssp             TTTT
T ss_pred             CCcC
Confidence            8994

PyMOL of 1zkd

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*	Back alignment and structure

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*	Back alignment and structure

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*	Back alignment and structure

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}	Back alignment and structure

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*	Back alignment and structure

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42	Back alignment and structure

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*	Back alignment and structure

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}	Back alignment and structure

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*	Back alignment and structure

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0	Back alignment and structure

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*	Back alignment and structure

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18	Back alignment and structure

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36	Back alignment and structure

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45	Back alignment and structure

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*	Back alignment and structure

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}	Back alignment and structure

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}	Back alignment and structure

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}	Back alignment and structure

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}	Back alignment and structure

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A	Back alignment and structure

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32	Back alignment and structure

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}	Back alignment and structure

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A	Back alignment and structure

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}	Back alignment and structure

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A	Back alignment and structure

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}	Back alignment and structure

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}	Back alignment and structure

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*	Back alignment and structure

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32	Back alignment and structure

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41	Back alignment and structure

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}	Back alignment and structure

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}	Back alignment and structure

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}	Back alignment and structure

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}	Back alignment and structure

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}	Back alignment and structure

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*	Back alignment and structure

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*	Back alignment and structure

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}	Back alignment and structure

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}	Back alignment and structure

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}	Back alignment and structure

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*	Back alignment and structure

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}	Back alignment and structure

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43	Back alignment and structure

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}	Back alignment and structure

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7	Back alignment and structure

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*	Back alignment and structure

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}	Back alignment and structure

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}	Back alignment and structure

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*	Back alignment and structure

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*	Back alignment and structure

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}	Back alignment and structure

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}	Back alignment and structure

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A	Back alignment and structure

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}	Back alignment and structure

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7	Back alignment and structure

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}	Back alignment and structure

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45	Back alignment and structure

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A	Back alignment and structure

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A	Back alignment and structure

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}	Back alignment and structure

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}	Back alignment and structure

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}	Back alignment and structure

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}	Back alignment and structure

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*	Back alignment and structure

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}	Back alignment and structure

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A	Back alignment and structure

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*	Back alignment and structure

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43	Back alignment and structure

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}	Back alignment and structure

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}	Back alignment and structure

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*	Back alignment and structure

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20	Back alignment and structure

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*	Back alignment and structure

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0	Back alignment and structure

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}	Back alignment and structure

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*	Back alignment and structure

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}	Back alignment and structure

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24	Back alignment and structure

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*	Back alignment and structure

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*	Back alignment and structure

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}	Back alignment and structure

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A	Back alignment and structure

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42	Back alignment and structure

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*	Back alignment and structure

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21	Back alignment and structure

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}	Back alignment and structure

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*	Back alignment and structure

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*	Back alignment and structure

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4	Back alignment and structure

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*	Back alignment and structure

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*	Back alignment and structure

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}	Back alignment and structure

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*	Back alignment and structure

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*	Back alignment and structure

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*	Back alignment and structure

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}	Back alignment and structure

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...	Back alignment and structure

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}	Back alignment and structure

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31	Back alignment and structure

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*	Back alignment and structure

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*	Back alignment and structure

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}	Back alignment and structure

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46	Back alignment and structure

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}	Back alignment and structure

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46	Back alignment and structure

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17	Back alignment and structure

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}	Back alignment and structure

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*	Back alignment and structure

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43	Back alignment and structure

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}	Back alignment and structure

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1	Back alignment and structure

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*	Back alignment and structure

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}	Back alignment and structure

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0	Back alignment and structure

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*	Back alignment and structure

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*	Back alignment and structure

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*	Back alignment and structure

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33	Back alignment and structure

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}	Back alignment and structure

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*	Back alignment and structure

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*	Back alignment and structure

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}	Back alignment and structure

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*	Back alignment and structure

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}	Back alignment and structure

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}	Back alignment and structure

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}	Back alignment and structure

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1	Back alignment and structure

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*	Back alignment and structure

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*	Back alignment and structure

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}	Back alignment and structure

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}	Back alignment and structure

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}	Back alignment and structure

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*	Back alignment and structure

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13	Back alignment and structure

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46	Back alignment and structure

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*	Back alignment and structure

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53	Back alignment and structure

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}	Back alignment and structure

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*	Back alignment and structure

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}	Back alignment and structure

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53	Back alignment and structure

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}	Back alignment and structure

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}	Back alignment and structure

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A	Back alignment and structure

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*	Back alignment and structure

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A	Back alignment and structure

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*	Back alignment and structure

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}	Back alignment and structure

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41	Back alignment and structure

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13	Back alignment and structure

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}	Back alignment and structure

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}	Back alignment and structure

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}	Back alignment and structure

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A	Back alignment and structure

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*	Back alignment and structure

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A	Back alignment and structure

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*	Back alignment and structure

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20	Back alignment and structure

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}	Back alignment and structure

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}	Back alignment and structure

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*	Back alignment and structure

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}	Back alignment and structure

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24	Back alignment and structure

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*	Back alignment and structure

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3	Back alignment and structure

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17	Back alignment and structure

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}	Back alignment and structure

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*	Back alignment and structure

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*	Back alignment and structure

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*	Back alignment and structure

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}	Back alignment and structure

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*	Back alignment and structure

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A	Back alignment and structure

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}	Back alignment and structure

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A	Back alignment and structure

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}	Back alignment and structure

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54	Back alignment and structure

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}	Back alignment and structure

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*	Back alignment and structure

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*	Back alignment and structure

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}	Back alignment and structure

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}	Back alignment and structure

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E	Back alignment and structure

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}	Back alignment and structure

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*	Back alignment and structure

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13	Back alignment and structure

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46	Back alignment and structure

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*	Back alignment and structure

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}	Back alignment and structure

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*	Back alignment and structure

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*	Back alignment and structure

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*	Back alignment and structure

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*	Back alignment and structure

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}	Back alignment and structure

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A	Back alignment and structure

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46	Back alignment and structure

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}	Back alignment and structure

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}	Back alignment and structure

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*	Back alignment and structure

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13	Back alignment and structure

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}	Back alignment and structure

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}	Back alignment and structure

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*	Back alignment and structure

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24	Back alignment and structure

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*	Back alignment and structure

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}	Back alignment and structure

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}	Back alignment and structure

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*	Back alignment and structure

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*	Back alignment and structure

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}	Back alignment and structure

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}	Back alignment and structure

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}	Back alignment and structure

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*	Back alignment and structure

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*	Back alignment and structure

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*	Back alignment and structure

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}	Back alignment and structure

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}	Back alignment and structure

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*	Back alignment and structure

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}	Back alignment and structure

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15	Back alignment and structure

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}	Back alignment and structure

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6	Back alignment and structure

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*	Back alignment and structure

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*	Back alignment and structure

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}	Back alignment and structure

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*	Back alignment and structure

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...	Back alignment and structure

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}	Back alignment and structure

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A	Back alignment and structure

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41	Back alignment and structure

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}	Back alignment and structure

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		483
d1zkda1		365	c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {	3e-73

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 365	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  233 bits (595), Expect = 3e-73
 Identities = 127/401 (31%), Positives = 192/401 (47%), Gaps = 40/401 (9%)

Query: 83  ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFG 142
           ++ L   +K +IK   GP+ V  YME  L +P+ G+Y+ RD  G EGDF TSPE+SQMFG
Sbjct: 3   QTALATEIKRLIK-AAGPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFG 61

Query: 143 EMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202
           E++G+W+  +W+   +P  + L+E+GPGRGT+MAD LR         +SL +HLVE +P 
Sbjct: 62  ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121

Query: 203 LQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDAL 262
           L++ Q   L  +                     + WH + E VP G P +I+A+E++D L
Sbjct: 122 LRQKQQTLLAGIR-------------------NIHWHDSFEDVPEG-PAVILANEYFDVL 161

Query: 263 PVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV 322
           P+HQ  K   GW E++++I       F ++  P P      +       +        E 
Sbjct: 162 PIHQAIKRETGWHERVIEIGASGELVFGVAADPIPG----FEALLPPLARLSPPGAVFEW 217

Query: 323 CAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAY 382
                E+    ++     G   +I    L   V D+ QAI  H + D   +PG ADL+A+
Sbjct: 218 RP-DTEILKIASRVRDQGGAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAH 276

Query: 383 VDFASISHSAEEASERVSVHGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSL 442
           VDF ++  +AE    R   HGP+TQ  FL  LGI  R  SL+   T + +E +      L
Sbjct: 277 VDFDALGRAAESIGAR--AHGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQRL 334

Query: 443 VGEGEAPFWEGPDEQAPIGMGTRYLAMAIVNKNQGVPVPFE 483
            GEG               MG+ +  + + +      V   
Sbjct: 335 TGEGRG------------AMGSMFKVIGVSDPKIETLVALS 363

PyMOL of d1zkda1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		483
d1zkda1		365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	100.0
d1qama_		235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	96.91
d1wzna1		251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.76
d1im8a_		225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.74
d1jqea_		280	Histamine methyltransferase {Human (Homo sapiens)	96.7
d1vl5a_		231	Hypothetical protein BH2331 {Bacillus halodurans [	96.67
d1wy7a1		201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	96.62
d1ve3a1		226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.23
d1yuba_		245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.01
d1qyra_		252	High level kasugamycin resistance protein KsgA {Es	95.98
d1zq9a1		278	Probable dimethyladenosine transferase {Human (Hom	95.98
d1ne2a_		197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.97
d1pjza_		201	Thiopurine S-methyltransferase {Pseudomonas syring	95.93
d1dusa_		194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.85
d2o57a1		282	Putative sarcosine dimethylglycine methyltransfera	95.82
d1xtpa_		254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.82
d2gh1a1		281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.79
d1i4wa_		322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.65
d2ex4a1		222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.59
d2i6ga1		198	Putative methyltransferase TehB {Salmonella typhim	95.59
d2avna1		246	Hypothetical methyltransferase TM1389 {Thermotoga	95.52
d1xxla_		234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	95.51
d1p91a_		268	rRNA methyltransferase RlmA {Escherichia coli [Tax	95.0
d2f8la1		328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.0
d1xvaa_		292	Glycine N-methyltransferase {Rat (Rattus norvegicu	94.95
d1dl5a1		213	Protein-L-isoaspartyl O-methyltransferase {Thermot	94.93
d1r18a_		223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	94.9
d1nkva_		245	Hypothetical Protein YjhP {Escherichia coli [TaxId	94.86
d1zx0a1		229	Guanidinoacetate methyltransferase {Human (Homo sa	94.61
d2p7ia1		225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.58
d1i1na_		224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.5
d1yb2a1		250	Hypothetical protein Ta0852 {Thermoplasma acidophi	94.45
d2fk8a1		280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.21
d1qzza2		256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	93.92
d1y8ca_		246	Putative methyltransferase CAC2371 {Clostridium ac	93.9
d1u2za_		406	Catalytic, N-terminal domain of histone methyltran	93.63
d2bzga1		229	Thiopurine S-methyltransferase {Human (Homo sapien	93.53
d1tw3a2		253	Carminomycin 4-O-methyltransferase {Streptomyces p	93.48
d1i9ga_		264	Probable methyltransferase Rv2118c {Mycobacterium	93.32
d1jg1a_		215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.09
d2b3ta1		274	N5-glutamine methyltransferase, HemK {Escherichia	93.03
d1o54a_		266	Hypothetical protein TM0748 {Thermotoga maritima [	92.98
d2nxca1		254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	92.95
d1g8sa_		230	Fibrillarin homologue {Archaeon Methanococcus jann	92.61
d1g8aa_		227	Fibrillarin homologue {Archaeon Pyrococcus horikos	92.04
d1l3ia_		186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	91.8
d2okca1		425	Type I restriction enzyme StySJI M protein {Bacter	91.8
d1nw3a_		328	Catalytic, N-terminal domain of histone methyltran	91.67
d1vbfa_		224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	91.58
d2b25a1		324	Hypothetical protein FLJ20628 {Human (Homo sapiens	91.52
d2cl5a1		214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.35
d1kpia_		291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	90.99
d2g72a1		263	Phenylethanolamine N-methyltransferase, PNMTase {H	90.93
d1nt2a_		209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	90.65
d1vlma_		208	Possible histamine N-methyltransferase TM1293 {The	90.42
d1ri5a_		252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	90.2
d1ws6a1		171	Methyltransferase TTHA0928 {Thermus thermophilus [	89.01
d2fcaa1		204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	87.34
d2avda1		219	COMT domain-containing protein 1, COMTD1 {Human (H	86.91
d1kpga_		285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	86.8
d2ih2a1		223	DNA methylase TaqI, N-terminal domain {Thermus aqu	86.55
d1yzha1		204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	86.12
d2a14a1		257	Indolethylamine N-methyltransferase, INMT {Human (	85.27
d2esra1		152	Putative methyltransferase SPy1538 {Streptococcus	84.69
d2fyta1		311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	84.13
d1oria_		316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	83.91
d2h00a1		250	Methyltransferase 10 domain containing protein MET	83.29
d1nv8a_		271	N5-glutamine methyltransferase, HemK {Thermotoga m	83.19
d1g6q1_		328	Arginine methyltransferase, HMT1 {Baker's yeast (S	83.17
d1susa1		227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	80.67

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=3.7e-93  Score=733.36  Aligned_cols=358  Identities=37%  Similarity=0.657  Sum_probs=316.4

Q ss_pred             hHHHHHHHHHHHhhcCCcccHHHHHHHhhcCCCCcccCCCCCCCCCCCccCCCChhHHHHHHHHHHHHHHHHHcCCCCCc
Q 011546           83 ESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRV  162 (483)
Q Consensus        83 ~~~L~~~i~~~I~~~~GpIsf~~FM~~aLY~P~~GYY~~~~~~G~~GDFiTSpeIs~~FGe~Ia~~i~~~w~~~g~p~~~  162 (483)
                      .++|.+.|+++|++. |||||++||++|||||++|||+++.+||++||||||||||++||++||+|+.++|+.++.|.++
T Consensus         3 ~~~L~~~i~~~i~~~-G~i~f~~fM~~~LY~p~~GYY~~~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~   81 (365)
T d1zkda1           3 QTALATEIKRLIKAA-GPMPVWRYMELCLGHPEHGYYVTRDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTL   81 (365)
T ss_dssp             SSHHHHHHHHHHHHH-CSEEHHHHHHHHHHCTTTCTTTCC--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSE
T ss_pred             ccHHHHHHHHHHHhc-CCccHHHHHHHHcCCCCccccCCCCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            368999999999998 9999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHHhcccccccCcCCcccceeeccCCCCceeecccc
Q 011546          163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAAL  242 (483)
Q Consensus       163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~sl  242 (483)
                      +|||+|||+|+||+|||++++..|.+++.++|++||+||.||+.|+++|+..                   .++.|+.++
T Consensus        82 ~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-------------------~~i~w~~~~  142 (365)
T d1zkda1          82 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-------------------RNIHWHDSF  142 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-------------------SSEEEESSG
T ss_pred             eEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-------------------ccceeccCh
Confidence            9999999999999999999998899999999999999999999999999742                   269999999


Q ss_pred             ccCCCCCCEEEEEecccccccceEEEEcCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEE
Q 011546          243 EQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEV  322 (483)
Q Consensus       243 ~~lp~~~~~iiiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~v~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei  322 (483)
                      +++|.. |+||||||||||||||+|++++++|+|++|++++++++.+...+...+.........    ....++|+++|+
T Consensus       143 ~~~~~~-~g~iiaNE~fDAlPv~~~~~~~~~~~E~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~e~  217 (365)
T d1zkda1         143 EDVPEG-PAVILANEYFDVLPIHQAIKRETGWHERVIEIGASGELVFGVAADPIPGFEALLPPL----ARLSPPGAVFEW  217 (365)
T ss_dssp             GGSCCS-SEEEEEESSGGGSCCEEEEEETTEEEEEEEEECTTSCEEEEECSSCCTTCGGGSCGG----GGGCCTTCEEEE
T ss_pred             hhcccC-CeEEEecccCccccceEEEEcCccceeeeeeecccceeEEeeccccchhHHhhhchh----hhccCCCccccc
Confidence            999986 999999999999999999999999999999998888888887766555321111111    123468999999


Q ss_pred             chhHHHHHHHHHHHhccCCeEEEEEeCCCCCC-cCCccceeccccccCCCCCCCccccccccCHHHHHHHHHHhcCceee
Q 011546          323 CAKAMELTGAMAKRIGSDGGGALIIDYGLNGV-VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEASERVSV  401 (483)
Q Consensus       323 ~~~a~~~l~~la~~l~~~~G~~LiIDYG~~~~-~~gTLr~yr~H~~~dpl~~PG~~DITAhVdF~~L~~~a~~~g~g~~~  401 (483)
                      +++...|+..++..+.+  |++|+||||+... .++|+|+|++|+.+|||.+||++||||||||++|++++++.  |+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~--G~~l~iDYG~~~~~~~~~l~~~~~h~~~d~l~~pG~~DIT~~VnFs~L~~~~~~~--g~~~  293 (365)
T d1zkda1         218 RPDTEILKIASRVRDQG--GAALIIDYGHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFDALGRAAESI--GARA  293 (365)
T ss_dssp             CCSHHHHHHHHHHHHHC--EEEEEEEEEESSCCBCCCCEEECSSSEECTTSSTTSSEEECCEEHHHHHHHHHHT--TCEE
T ss_pred             chHHHHHHHhhhhhhcc--cceeeeccccccccccccchhhhhhhccccccCCCCcceeeeeCHHHHHHHHHhc--Ccce
Confidence            99999999988887775  9999999999765 56678889999999999999999999999999999999987  6999


Q ss_pred             eccccHHHHHHhCChHHHHHHHHhcCCHHHHHHHHHHHhHhhcCCCCCCCCCCCCCCCCC--CcccccEEEEecCCCCCC
Q 011546          402 HGPMTQSQFLGSLGINFRVESLLQNCTEEQAESLRTGYWSLVGEGEAPFWEGPDEQAPIG--MGTRYLAMAIVNKNQGVP  479 (483)
Q Consensus       402 ~g~~tQ~~FL~~lGI~~rl~~L~~~~~~~~~~~~~~~~~rLi~~~~~~~~~~~~~~~P~~--MGe~FKVl~i~~k~~~~~  479 (483)
                      .|++||++||++|||.+|++.|.++.++++..++.++++||++              |.+  |||+||||+++++++..+
T Consensus       294 ~~~~tQ~~FL~~~GI~~~~~~l~~~~~~~~~~~~~~~~~~Li~--------------p~~~~MGe~FKVl~~~~~~~~~~  359 (365)
T d1zkda1         294 HGPVTQGAFLKRLGIETRALSLMAKATPQVSEDIAGALQRLTG--------------EGRGAMGSMFKVIGVSDPKIETL  359 (365)
T ss_dssp             EEEEEHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--------------EETTEETTTEEEEEEECTTCCCC
T ss_pred             eccccHHHHHHHCCHHHHHHHHHccCCHHHHHHHHHHHHHhcC--------------CCchhcchhEEEEEEeCCCCCCC
Confidence            9999999999999999999999888788888899999999999              965  999999999999998888


Q ss_pred             CCCC
Q 011546          480 VPFE  483 (483)
Q Consensus       480 ~gF~  483 (483)
                      .||+
T Consensus       360 ~gf~  363 (365)
T d1zkda1         360 VALS  363 (365)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            8995

PyMOL of d1zkda1

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}	Back information, alignment and structure

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}	Back information, alignment and structure

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}	Back information, alignment and structure

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}	Back information, alignment and structure

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}	Back information, alignment and structure

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}	Back information, alignment and structure

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}	Back information, alignment and structure

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}	Back information, alignment and structure

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}	Back information, alignment and structure

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}	Back information, alignment and structure

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}	Back information, alignment and structure

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure