Citrus Sinensis ID: 011550

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MALAASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR
cccccccEEEEccccccccccccccccHHHHHcccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHcEEEEEEEccccccHHccHHHHHHHHHccHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccHHHccccccccccEEEEEEEccccccccccccccEEEccccEEEEEEEEEEEccccccEEEccEEEEEEccccccEEEEcccccccccccEEEEEcccccccccEEEEEEccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccccccEEEcccccccccccEccEEEEEccccEEEEEcccEEEEEEEcccccccEEEEEccccccccccccEEEEccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHEHHHEEEcccccHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHccccccccHHEEHHHHHcccHHHHHHHHHHHHcccccccccccccccccccHHHHccccHHHcccEEEEEcccccccccccccEEEEEcccccEEEEEEEEEEcccccEEEcccEEEEEEccccccEEEEccccEEEEcccEEEEEcccccccccEEEEEEccccccccccccEEEEEccccccHHHHHHHHHHHHHHcccHHHEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHcc
MALAASSIClygnerignpcsrtgfaiteksqnRRMVYYRGIVTLKiksngkksTCSQLMRSYRNcckiglrcsnlvsgrrekvssisntgttiPEAKEVLKNlvhpvpnvLKEWSQLQLINVAGVLACMFLVipsagavdALKTCTCLLRECRLELAecisnpacaaNVACLqtcnnrpdetecqikcgdlfensvvdefnecavsrkkcvpqksdlgefpvpdpailvksfnikdfngkwyissglnpsfdtfdcqlhefHTESNKLIGnlswrirtpdggfftrSAMQrffqdpihpgilynhdneylhykddwYILSSKIQNEPDDYVFVYYRgsndawdgyggaflytrsktvpetiVPELERAAKSVGrdfnkfirtdntcgpepplvERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLfgralpvkkir
MALAASSICLygnerignpcsrtgfaiteksqnrrmVYYRGIVtlkiksngkkstcSQLMRSYRNCCKiglrcsnlvsgrrekvssisntgttipeAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKkcvpqksdlgefpvpDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTEsnklignlsWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKfirtdntcgpepplVERLEKKVEEGERTIIKeveqlegevekvgrTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEAsevenlfgralpvkkir
MALAASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKtctcllrecrlelaecISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR
******SICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGR**********GTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDN*****************************************MTLFQRL**************************************************
******SICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKS*G*******LMRSYRNCCKIGLRCS***************************KNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPL*****************************GRTEMTLFQRLAEGFKE***********************KMEASEVENLFGRALPVKKI*
MALAASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVKKIR
***AASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVEKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPV****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALAASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLxxxxxxxxxxxxxxxxxxxxxLEGEVEKVGRTEMTLFQRLAEGxxxxxxxxxxxxxxxxxxxxxLLSELKMEASEVENLFGRALPVKKIR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q9SM43472 Violaxanthin de-epoxidase N/A no 0.960 0.983 0.663 0.0
Q39249462 Violaxanthin de-epoxidase yes no 0.801 0.837 0.739 1e-174
Q40593478 Violaxanthin de-epoxidase N/A no 0.915 0.924 0.672 1e-171
Q40251473 Violaxanthin de-epoxidase N/A no 0.894 0.913 0.649 1e-167
>sp|Q9SM43|VDE_SPIOL Violaxanthin de-epoxidase, chloroplastic OS=Spinacia oleracea GN=VDE1 PE=1 SV=2 Back     alignment and function desciption
 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/491 (66%), Positives = 387/491 (78%), Gaps = 27/491 (5%)

Query: 1   MALAASSICLYGNERIG--NPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQ 58
           MAL A SIC+  +E  G  N  S   F   +  Q +    ++      I+ N +K +C++
Sbjct: 1   MALVARSICVSYDEIAGICNNVSHRNF--KKWVQWKNPFLFQDDARRNIRFNDRKLSCTK 58

Query: 59  LMRSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWS-- 116
            + +           S  +   +   S + + G  +  +K V+ N V P     K+W+  
Sbjct: 59  FIGA-----------SEKLQHSKSPKSGLISCGWEVNSSK-VVSNAVIP-----KKWNLL 101

Query: 117 QLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTC 176
           +L+++ V  ++AC F V+ SA AVDALKTCTCLL+ECR+ELA+CI+NP+CAANVACLQTC
Sbjct: 102 KLKVVEVTAIVACTFFVMSSAQAVDALKTCTCLLKECRIELAKCIANPSCAANVACLQTC 161

Query: 177 NNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIK 236
           NNRPDETECQIKCGDLF N VVDEFNECAVSRKKCVPQKSD+GEFPVPDP++LVKSFN+ 
Sbjct: 162 NNRPDETECQIKCGDLFANKVVDEFNECAVSRKKCVPQKSDVGEFPVPDPSVLVKSFNMA 221

Query: 237 DFNGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQD 296
           DFNGKW+ISSGLNP+FD FDCQLHEFH E  KL+GNLSWRI+TPDGGFFTR+A+Q+F QD
Sbjct: 222 DFNGKWFISSGLNPTFDAFDCQLHEFHLEDGKLVGNLSWRIKTPDGGFFTRTAVQKFAQD 281

Query: 297 PIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSK 356
           P  PG+LYNHDN YLHY+DDWYILSSKI+N+PDDYVFVYYRG NDAWDGYGGAFLYTRS 
Sbjct: 282 PSQPGMLYNHDNAYLHYQDDWYILSSKIENQPDDYVFVYYRGRNDAWDGYGGAFLYTRSA 341

Query: 357 TVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLE 416
           TVPE IVPEL RAA+SVG+DFNKFIRTDNTCGPEPPLVERLEK VEEGERTIIKEVEQLE
Sbjct: 342 TVPENIVPELNRAAQSVGKDFNKFIRTDNTCGPEPPLVERLEKTVEEGERTIIKEVEQLE 401

Query: 417 GEV----EKVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENL 472
           GE+    EKVG+TEMTLFQRL EGF+ELQKDEE FL+EL+KEE +LL +LKMEA EVE L
Sbjct: 402 GEIEGDLEKVGKTEMTLFQRLLEGFQELQKDEEYFLKELNKEERELLEDLKMEAGEVEKL 461

Query: 473 FGRALPVKKIR 483
           FGRALP++K+R
Sbjct: 462 FGRALPIRKLR 472
Part of the xanthophyll (or violaxanthin) cycle for controlling the concentration of zeaxanthin in chloroplasts. Catalyzes the two-step mono de-epoxidation reaction. Stereospecific for all-trans xanthophylls. Zeaxanthin induces the dissipation of excitation energy in the chlorophyll of the light-harvesting protein complex of photosystem II.
Spinacia oleracea (taxid: 3562)
EC: 1EC: .EC: 1EC: 0EC: .EC: 9EC: 9EC: .EC: 3
>sp|Q39249|VDE_ARATH Violaxanthin de-epoxidase, chloroplastic OS=Arabidopsis thaliana GN=VDE1 PE=1 SV=1 Back     alignment and function description
>sp|Q40593|VDE_TOBAC Violaxanthin de-epoxidase, chloroplastic OS=Nicotiana tabacum GN=VDE1 PE=2 SV=1 Back     alignment and function description
>sp|Q40251|VDE_LACSA Violaxanthin de-epoxidase, chloroplastic OS=Lactuca sativa GN=VDE1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
296875326483 violaxanthin de-epoxidase [Citrus sinens 1.0 1.0 0.993 0.0
399158081479 violaxanthin de-epoxidase 1 [Vitis vinif 0.991 1.0 0.716 0.0
225462409479 PREDICTED: violaxanthin de-epoxidase, ch 0.991 1.0 0.714 0.0
296085191437 unnamed protein product [Vitis vinifera] 0.902 0.997 0.758 0.0
255569006484 conserved hypothetical protein [Ricinus 1.0 0.997 0.719 0.0
224123666489 predicted protein [Populus trichocarpa] 1.0 0.987 0.687 0.0
75266081472 RecName: Full=Violaxanthin de-epoxidase, 0.960 0.983 0.663 0.0
19113671473 violaxanthin de-epoxidase [Camellia sine 0.979 1.0 0.687 0.0
81302478482 violaxanthin de-epoxidase [Coffea arabic 0.948 0.950 0.688 0.0
81296554482 violaxanthin de-epoxidase [Coffea caneph 0.948 0.950 0.684 0.0
>gi|296875326|gb|ADH82116.1| violaxanthin de-epoxidase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/483 (99%), Positives = 483/483 (100%)

Query: 1   MALAASSICLYGNERIGNPCSRTGFAITEKSQNRRMVYYRGIVTLKIKSNGKKSTCSQLM 60
           MALAASSICLYGNERIGNPCSRTGFAITEK+QNRRMVYYRGIVTLKIKSNGKKSTCSQLM
Sbjct: 1   MALAASSICLYGNERIGNPCSRTGFAITEKNQNRRMVYYRGIVTLKIKSNGKKSTCSQLM 60

Query: 61  RSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQL 120
           RSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQL
Sbjct: 61  RSYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQL 120

Query: 121 INVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRP 180
           INVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRP
Sbjct: 121 INVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAANVACLQTCNNRP 180

Query: 181 DETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNG 240
           DETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFN+KDFNG
Sbjct: 181 DETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNLKDFNG 240

Query: 241 KWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHP 300
           KWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHP
Sbjct: 241 KWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHP 300

Query: 301 GILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPE 360
           GILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPE
Sbjct: 301 GILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPE 360

Query: 361 TIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVE 420
           TIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVE
Sbjct: 361 TIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERTIIKEVEQLEGEVE 420

Query: 421 KVGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVK 480
           KVG+TEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVK
Sbjct: 421 KVGKTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVK 480

Query: 481 KIR 483
           KIR
Sbjct: 481 KIR 483

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|399158081|gb|AFP28802.1| violaxanthin de-epoxidase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462409|ref|XP_002267152.1| PREDICTED: violaxanthin de-epoxidase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085191|emb|CBI28686.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255569006|ref|XP_002525473.1| conserved hypothetical protein [Ricinus communis] gi|223535286|gb|EEF36963.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224123666|ref|XP_002319136.1| predicted protein [Populus trichocarpa] gi|222857512|gb|EEE95059.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75266081|sp|Q9SM43.2|VDE_SPIOL RecName: Full=Violaxanthin de-epoxidase, chloroplastic; Flags: Precursor gi|17221329|emb|CAB59211.2| violaxanthin de-epoxidase [Spinacia oleracea] Back     alignment and taxonomy information
>gi|19113671|gb|AAL67858.2|AF462269_1 violaxanthin de-epoxidase [Camellia sinensis] Back     alignment and taxonomy information
>gi|81302478|gb|ABB70816.1| violaxanthin de-epoxidase [Coffea arabica] Back     alignment and taxonomy information
>gi|81296554|gb|ABB70514.1| violaxanthin de-epoxidase [Coffea canephora] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
TAIR|locus:2025510462 NPQ1 "non-photochemical quench 0.780 0.816 0.738 1.8e-158
TAIR|locus:2052454522 AT2G21860 "AT2G21860" [Arabido 0.465 0.431 0.220 0.00028
TAIR|locus:2025510 NPQ1 "non-photochemical quenching 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
 Identities = 282/382 (73%), Positives = 326/382 (85%)

Query:   107 PVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKXXXXXXXXXXXXXXXXISNPAC 166
             P  N LKE +   L+ + GVLAC FL++PSA AVDALK                I+NPAC
Sbjct:    81 PSKNELKELTAPLLLKLVGVLACAFLIVPSADAVDALKTCACLLKGCRIELAKCIANPAC 140

Query:   167 AANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDP 226
             AANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVP+KSDLGEFP PDP
Sbjct:   141 AANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDLGEFPAPDP 200

Query:   227 AILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSWRIRTPDGGFF 285
             ++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE  NKL+GN+SWRI+T D GFF
Sbjct:   201 SVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFF 260

Query:   286 TRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDG 345
             TRSA+Q+F QDP  PG+LYNHDNEYLHY+DDWYILSSKI+N+P+DY+FVYYRG NDAWDG
Sbjct:   261 TRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDG 320

Query:   346 YGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGE 405
             YGGA +YTRS  +P +I+PELE+AAKS+GRDF+ FIRTDNTCGPEP LVER+EK VEEGE
Sbjct:   321 YGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEPALVERIEKTVEEGE 380

Query:   406 RTIIKEVEQLEGEVEK----VGRTEMTLFQRLAEGFKELQKDEEKFLRELSKEEMDLLSE 461
             R I+KEVE++E EVEK    VGRTEMTLFQRLAEGF EL++DEE F+RELSKEEM+ L E
Sbjct:   381 RIIVKEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVRELSKEEMEFLDE 440

Query:   462 LKMEASEVENLFGRALPVKKIR 483
             +KMEASEVE LFG+ALP++K+R
Sbjct:   441 IKMEASEVEKLFGKALPIRKVR 462
GO:0009507 "chloroplast" evidence=ISM;IEA;IDA
GO:0046422 "violaxanthin de-epoxidase activity" evidence=IEA;IMP
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010028 "xanthophyll cycle" evidence=IMP
GO:0016122 "xanthophyll metabolic process" evidence=TAS
GO:0030095 "chloroplast photosystem II" evidence=TAS
GO:0009543 "chloroplast thylakoid lumen" evidence=IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009408 "response to heat" evidence=IMP
GO:0006631 "fatty acid metabolic process" evidence=IGI
GO:0015994 "chlorophyll metabolic process" evidence=IGI;RCA
GO:0005515 "protein binding" evidence=IPI
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2052454 AT2G21860 "AT2G21860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40593VDE_TOBAC1, ., 1, 0, ., 9, 9, ., 30.67260.91510.9246N/Ano
Q40251VDE_LACSA1, ., 1, 0, ., 9, 9, ., 30.64950.89440.9133N/Ano
Q39249VDE_ARATH1, ., 1, 0, ., 9, 9, ., 30.73970.80120.8376yesno
Q9SM43VDE_SPIOL1, ., 1, 0, ., 9, 9, ., 30.66390.96060.9830N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.10.99.30.991
3rd Layer1.10.990.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
PLN02372455 PLN02372, PLN02372, violaxanthin de-epoxidase 0.0
pfam07137198 pfam07137, VDE, Violaxanthin de-epoxidase (VDE) 1e-151
COG0420390 COG0420, SbcD, DNA repair exonuclease [DNA replica 2e-05
PRK00409 782 PRK00409, PRK00409, recombination and DNA strand e 0.004
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase Back     alignment and domain information 
 Score =  699 bits (1805), Expect = 0.0
 Identities = 298/440 (67%), Positives = 352/440 (80%), Gaps = 8/440 (1%)

Query: 49  SNGKKSTCSQLMR-SYRNCCKIGLRCSNLVSGRREKVSSISNTGTTIPEAKEVLKNLVHP 107
           S+    T S + R ++R       R  + +S R    SS ++      +++E    +   
Sbjct: 16  SSSTSRTHSSVSRSNHRAVLAPRRRSMSAISSRTSSRSSRASASLRKSDSEEEFDFVGLS 75

Query: 108 VPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACA 167
             N LKEWS+L L+   G+LAC  L +PSA A DALKTC CLL+ECRLELA+CI+NP CA
Sbjct: 76  SLNELKEWSRLLLLKALGLLACALLSVPSADAADALKTCACLLKECRLELAKCIANPKCA 135

Query: 168 ANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPA 227
           ANVACLQTCN RPDETECQIKCGDLFEN VVDEFNECAV+RKKCVPQKSD GEFPVPDP+
Sbjct: 136 ANVACLQTCNGRPDETECQIKCGDLFENKVVDEFNECAVTRKKCVPQKSDDGEFPVPDPS 195

Query: 228 ILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTE-SNKLIGNLSWRIRTPDGGFFT 286
            LV++F+  DFNG+WYI+SGLN +FDTFDCQLHEF  E  +KL+GNL+WRI TPDGGFFT
Sbjct: 196 ALVQNFDTADFNGRWYITSGLNKTFDTFDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFT 255

Query: 287 RSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGY 346
           RSA+QRF QDP  PGILYNHDNEYLHY+DDWYILSSKI+N+PDDYVFVYYRG NDAWDGY
Sbjct: 256 RSAVQRFVQDPNQPGILYNHDNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGY 315

Query: 347 GGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGER 406
           GGA +YTRS T+PE+IVPELE+AAK VGRDF+ F+RTDNTCGPEPPL+ERLEK VEEGE+
Sbjct: 316 GGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEK 375

Query: 407 TIIKEV----EQLEGEVEKVGRTEMTLFQR--LAEGFKELQKDEEKFLRELSKEEMDLLS 460
           TI+KE     E+LE EVEK+G+ E +LF+R  L EG KEL++DEE FL+ELSKEE +LL 
Sbjct: 376 TIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLE 435

Query: 461 ELKMEASEVENLFGRALPVK 480
           +LKMEASEVE LFGRALPV+
Sbjct: 436 KLKMEASEVEKLFGRALPVR 455

Length = 455
>gnl|CDD|203587 pfam07137, VDE, Violaxanthin de-epoxidase (VDE) Back     alignment and domain information
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
PLN02372455 violaxanthin de-epoxidase 100.0
PF07137198 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IP 100.0
PF08212143 Lipocalin_2: Lipocalin-like domain; InterPro: IPR0 99.95
KOG4824224 consensus Apolipoprotein D/Lipocalin [Cell wall/me 99.93
COG3040174 Blc Bacterial lipocalin [Cell envelope biogenesis, 99.92
PRK10477177 outer membrane lipoprotein Blc; Provisional 99.92
PF00061144 Lipocalin: Lipocalin / cytosolic fatty-acid bindin 99.56
PF03973148 Triabin: Triabin; InterPro: IPR005657 This family 99.23
PF02087178 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitr 98.86
PF11032186 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 97.6
>PLN02372 violaxanthin de-epoxidase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-113  Score=876.62  Aligned_cols=392  Identities=73%  Similarity=1.271  Sum_probs=380.3

Q ss_pred             cCCCCchhhhhhhhccccCchhhHhhhhhhhhHhhhhHhhhheeecCCcchhccccccceecccChHHHhhhcCCcchhh
Q 011550           89 NTGTTIPEAKEVLKNLVHPVPNVLKEWSQLQLINVAGVLACMFLVIPSAGAVDALKTCTCLLRECRLELAECISNPACAA  168 (483)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~Cl~~~C~~~~~~C~~dp~C~~  168 (483)
                      +++..++++++++.++....++.+++|+++++++++++++|+++++|+|+|+|+++|++||++||+.|+++|++||+|++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~~Cllk~C~~qla~Ci~nP~C~~  136 (455)
T PLN02372         57 SASLRKSDSEEEFDFVGLSSLNELKEWSRLLLLKALGLLACALLSVPSADAADALKTCACLLKECRLELAKCIANPKCAA  136 (455)
T ss_pred             cccccccchhhhhhccchhhcchhhhhhHHHHHHHHHHHHHhhccCCchhhhhhhhhhhhHHhhhhHHHHHHhcChhhHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCCCCCcchhhhhhhhcCchhhhHHHHhhhcccCccccCCCCCCCCCCCcccccCCCccccCccceeeeeec
Q 011550          169 NVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPQKSDLGEFPVPDPAILVKSFNIKDFNGKWYISSGL  248 (483)
Q Consensus       169 ~l~Cl~~C~~~p~e~~C~~rC~~~ye~~~l~~fllCal~~~~Cv~~~~d~g~~P~P~p~~tv~nFDL~rF~GrWYEIAg~  248 (483)
                      ||+|||+|+||||||+||||||++|||++|++|+.|+|++|+|||+++|+|++|+|+|+++|++||.+.|.|+||+++|+
T Consensus       137 ~l~CL~~C~~rPdEq~CqirCg~~fen~~vd~fn~Cav~~k~CV~~~ad~ge~Pvp~p~~lv~~F~~~~f~GsWyivaGl  216 (455)
T PLN02372        137 NVACLQTCNGRPDETECQIKCGDLFENKVVDEFNECAVTRKKCVPQKSDDGEFPVPDPSALVQNFDTADFNGRWYITSGL  216 (455)
T ss_pred             HhHHHHhcCCCCCccchhhhhHhhhccHhHHHHHhhhhhccccccccccCCCCCCCChHHHhhccCccccCccEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCeEEEEEEc-CCceEEEeEeeEeCCCCcEEEEeeEEEEeeCCCCCeeEEEecCCCcCcccceEEEEeccCCC
Q 011550          249 NPSFDTFDCQLHEFHTE-SNKLIGNLSWRIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNE  327 (483)
Q Consensus       249 n~~fd~f~Cq~a~Ytl~-~dg~v~vvNsrv~tpdG~~~~~~G~arfv~dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~  327 (483)
                      |++||.|+||.+.|+.. +++++++++|++++|||+|++++.+++|++||.+||.|++++|+++||++|||||+...+++
T Consensus       217 NP~yD~FdCQ~h~F~~~~~~kl~~nl~wRv~tpdGgF~~Rs~vq~fvqd~~~P~il~n~~NeyLhyqddWyIl~~k~~~~  296 (455)
T PLN02372        217 NKTFDTFDCQLHEFTAEDPDKLVGNLNWRINTPDGGFFTRSAVQRFVQDPNQPGILYNHDNEYLHYQDDWYILSSKIENK  296 (455)
T ss_pred             CCCCCcccccceeeecCCCCceEEeeEEEEecCCCceEeecceeeeeccCCCCceEEcCCcceeecccceEEeeccccCC
Confidence            99999999999999987 67799999999999999999999999999999999999999999999999999999987777


Q ss_pred             CCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCCCCCCeEEcCCCCCCCCchhHHHHHHHhhhhhh
Q 011550          328 PDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKKVEEGERT  407 (483)
Q Consensus       328 ~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~GiD~skfi~TdQsC~~e~pL~~~~~~~~~~~~~~  407 (483)
                      +++|.+|||.|.++||++|+||+||||++.+|++++++++.++++.|+|+++|+.|||+|.|+|||.|||+|+||+||++
T Consensus       297 ~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~  376 (455)
T PLN02372        297 PDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKT  376 (455)
T ss_pred             CCCeEEEEecccccccccccceEEEecCCCCChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHH----HHHHHHHHHhccchHHHHHH--HHHHHHHHHHhHHHHHHHhcHHHHHHHHHhccchhHHHHHhccCcccc
Q 011550          408 IIKEV----EQLEGEVEKVGRTEMTLFQR--LAEGFKELQKDEEKFLRELSKEEMDLLSELKMEASEVENLFGRALPVK  480 (483)
Q Consensus       408 ~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (483)
                      |++|+    +|||+||++|+++|++||++  |.+||++||+|+++|+++||||||++|++|+||++||||+|||++|||
T Consensus       377 i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~f~~~~~~~  455 (455)
T PLN02372        377 IVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVEKLFGRALPVR  455 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence            99995    55555678999999999999  999999999999999999999999999999999999999999999997

>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE) Back     alignment and domain information
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ] Back     alignment and domain information
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10477 outer membrane lipoprotein Blc; Provisional Back     alignment and domain information
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ] Back     alignment and domain information
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation [] Back     alignment and domain information
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ] Back     alignment and domain information
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3cqn_A185 Crystal Structure Of The Lipocalin Domain Of Violax 7e-86
>pdb|3CQN|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin De-Epoxidase (Vde) At Ph7 Length = 185 Back     alignment and structure 
Iteration: 1

 Score =  314 bits (805), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 160/176 (90%), Gaps = 1/176 (0%)
Query: 217 DLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSW 275
           DLGEFP PDP++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE  NKL+GN+SW
Sbjct: 2   DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 61
Query: 276 RIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVY 335
           RI+T D GFFTRSA+Q+F QDP  PG+LYNHDNEYLHY+DDWYILSSKI+N+P+DY+FVY
Sbjct: 62  RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 121
Query: 336 YRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEP 391
           YRG NDAWDGYGGA +YTRS  +P +I+PELE+AAKS+GRDF+ FIRTDNTCGPEP
Sbjct: 122 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEP 177

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3cqn_A185 Violaxanthin DE-epoxidase, chloroplast; lipocalin, 2e-96
2hzq_A174 Apolipoprotein D, APO-D, APOD; lipocalin, beta bar 7e-17
3qkg_A193 Protein AMBP; beta barrel, binding protein, bound 7e-16
1qwd_A177 Outer membrane lipoprotein BLC; bacterial lipocali 1e-12
1kt6_A183 RBP, plasma retinol-binding protein; transport pro 4e-10
1i4u_A181 Crustacyanin; lipocalin fold, antiparallel beta ba 1e-09
3fmz_A212 Retinol-binding protein 4; disease mutation, secre 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1kxo_A184 DIGA16; lipocalin, anticalin, genetical engineerin 3e-08
3ebw_A163 PER A 4 allergen; beta barrel, cockroach; HET: PE4 5e-08
1z24_A189 Insecticyanin A form; blue biliprotein, INS-A, chr 6e-08
1gka_B174 Crustacyanin A2 subunit; lipocalin, lobster, astax 3e-07
2l5p_A184 Lipocalin 12; beta barrel, transport protein; NMR 2e-06
3bx8_A178 Engineered human lipocalin 2; protein design, liga 2e-05
1lf7_A182 Complement protein C8gamma; lipocalin, beta barrel 4e-05
3o22_A162 Prostaglandin-H2 D-isomerase; lipocalin, prostagla 6e-05
1epa_A164 Epididymal retinoic acid-binding protein; 2.10A {R 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-04
1ew3_A159 Allergen EQU C 1; lipocalin, beta barrel; 2.30A {E 4e-04
3s26_A190 Neutrophil gelatinase-associated lipocalin; beta-b 4e-04
2a2u_A181 Protein (alpha-2U-globulin); lipid binding protein 5e-04
2xst_A161 Lipocalin 15; transport protein, LCN15, MSFL2541; 7e-04
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A Length = 185 Back     alignment and structure
 Score =  288 bits (737), Expect = 2e-96
 Identities = 136/176 (77%), Positives = 160/176 (90%), Gaps = 1/176 (0%)

Query: 217 DLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSW 275
           DLGEFP PDP++LV++FNI DFNGKWYI+SGLNP+FD FDCQLHEFHTE  NKL+GN+SW
Sbjct: 2   DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISW 61

Query: 276 RIRTPDGGFFTRSAMQRFFQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVY 335
           RI+T D GFFTRSA+Q+F QDP  PG+LYNHDNEYLHY+DDWYILSSKI+N+P+DY+FVY
Sbjct: 62  RIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVY 121

Query: 336 YRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNTCGPEP 391
           YRG NDAWDGYGGA +YTRS  +P +I+PELE+AAKS+GRDF+ FIRTDNTCGPEP
Sbjct: 122 YRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGRDFSTFIRTDNTCGPEP 177
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A Length = 174 Back     alignment and structure
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens} Length = 193 Back     alignment and structure
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A Length = 177 Back     alignment and structure
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ... Length = 183 Back     alignment and structure
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A Length = 181 Back     alignment and structure
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory transduction, transport, vision, vitamin A, transport protein; HET: 2T1; 2.90A {Homo sapiens} Length = 212 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A* Length = 184 Back     alignment and structure
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana} Length = 163 Back     alignment and structure
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1 Length = 189 Back     alignment and structure
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1 Length = 174 Back     alignment and structure
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus} Length = 184 Back     alignment and structure
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A* Length = 178 Back     alignment and structure
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C Length = 182 Back     alignment and structure
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A* Length = 162 Back     alignment and structure
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A* Length = 164 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1 Length = 159 Back     alignment and structure
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 2k23_A Length = 190 Back     alignment and structure
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A Length = 181 Back     alignment and structure
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens} Length = 161 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3cqn_A185 Violaxanthin DE-epoxidase, chloroplast; lipocalin, 100.0
3ebw_A163 PER A 4 allergen; beta barrel, cockroach; HET: PE4 99.97
2hzq_A174 Apolipoprotein D, APO-D, APOD; lipocalin, beta bar 99.97
1gka_B174 Crustacyanin A2 subunit; lipocalin, lobster, astax 99.96
1qwd_A177 Outer membrane lipoprotein BLC; bacterial lipocali 99.95
1kxo_A184 DIGA16; lipocalin, anticalin, genetical engineerin 99.95
3fmz_A212 Retinol-binding protein 4; disease mutation, secre 99.95
1i4u_A181 Crustacyanin; lipocalin fold, antiparallel beta ba 99.95
1z24_A189 Insecticyanin A form; blue biliprotein, INS-A, chr 99.95
1kt6_A183 RBP, plasma retinol-binding protein; transport pro 99.95
3bx8_A178 Engineered human lipocalin 2; protein design, liga 99.94
1gm6_A175 SAL, salivary lipocalin; odorant-binding protein; 99.93
3s26_A190 Neutrophil gelatinase-associated lipocalin; beta-b 99.93
3cbc_A198 Neutrophil gelatinase-associated lipocalin; sidero 99.93
2xst_A161 Lipocalin 15; transport protein, LCN15, MSFL2541; 99.93
1ew3_A159 Allergen EQU C 1; lipocalin, beta barrel; 2.30A {E 99.92
2l5p_A184 Lipocalin 12; beta barrel, transport protein; NMR 99.92
2a2u_A181 Protein (alpha-2U-globulin); lipid binding protein 99.92
3o22_A162 Prostaglandin-H2 D-isomerase; lipocalin, prostagla 99.91
1lf7_A182 Complement protein C8gamma; lipocalin, beta barrel 99.91
1xki_A162 VON ebner'S gland protein; beta barrel, ligand bin 99.91
2ra6_A166 Trichosurin; lipocalin, beta barrel, glycoprotein, 99.9
2hlv_A160 Odorant-binding protein; domain swapping, transpor 99.9
1beb_A162 Beta-lactoglobulin; lipocalin, MILK WHEY protein, 99.9
1bj7_A156 D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: 99.9
1dzk_A157 PIG OBP, odorant-binding protein; lipocalin, trans 99.9
3qkg_A193 Protein AMBP; beta barrel, binding protein, bound 99.89
1exs_A160 Beta-lactoglobulin; lipocalin fold, lipid-binding 99.89
1epa_A164 Epididymal retinoic acid-binding protein; 2.10A {R 99.89
1e5p_A151 Aphrodisin; lipocalin, pheromone, hamster,; HET: M 99.88
3kff_A162 MUP 4, major urinary protein 4; pheromone, lipocal 99.87
3sao_A160 Extracellular fatty acid-binding protein; beta-bar 99.85
1pm1_X180 Nitrophorin 2, NP2, prolixin-S; beta barrel, lipoc 99.84
3l4r_A170 Allergen DOG 2, minor allergen CAN F 2; lipocalin 99.84
1x8p_A184 Nitrophorin 4, NP4; lipocalin, beta barrel, ferric 99.81
3ebk_A176 Allergen BLA G 4; beta barrel, cockroach, glycopro 99.8
4ge1_A197 Biogenic amine-binding protein; lipocalin binding 99.8
1avg_I142 Triabin; bovine thrombin, thrombin inhibitor, comp 99.77
3kq0_A192 Alpha-1-acid glycoprotein 1; plasma protein, polym 99.65
3fiq_A157 OBP1, RCG36470, odorant-binding protein 1F; lipoca 99.54
3bx6_A192 Alpha-1-acid glycoprotein; plasma protein, acute p 98.94
2yg2_A172 Apolipoprotein M; lipid transport, lipocalin, HDL; 97.57
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A Back     alignment and structure
Probab=100.00  E-value=1.2e-35  Score=279.55  Aligned_cols=176  Identities=77%  Similarity=1.462  Sum_probs=152.0

Q ss_pred             CCCCCCCCCcccccCCCccccCccceeeeeecCCCCCCCCCeEEEEEEcC-CceEEEeEeeEeCCCCcEEEEeeEEEEee
Q 011550          217 DLGEFPVPDPAILVKSFNIKDFNGKWYISSGLNPSFDTFDCQLHEFHTES-NKLIGNLSWRIRTPDGGFFTRSAMQRFFQ  295 (483)
Q Consensus       217 d~g~~P~P~p~~tv~nFDL~rF~GrWYEIAg~n~~fd~f~Cq~a~Ytl~~-dg~v~vvNsrv~tpdG~~~~~~G~arfv~  295 (483)
                      |+|++|+|+|.+++++||+++|.|+||.+|++|+.||.++||.+.|...+ +...+++++++..|+|+++++..++++++
T Consensus         2 ~~~~~p~p~~~~~~~dFd~~~fsGkWYi~ag~n~~~d~~dcq~~~F~~~k~~~~~G~L~~r~~~p~g~c~~~~~~~~~~q   81 (185)
T 3cqn_A            2 DLGEFPAPDPSVLVQNFNISDFNGKWYITSGLNPTFDAFDCQLHEFHTEGDNKLVGNISWRIKTLDSGFFTRSAVQKFVQ   81 (185)
T ss_dssp             ---CCCCCCGGGSCSCCCGGGGCEEEEEEEESCTTTTCCSCCEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CcCccCCCCccccCCCCChhhcceEEEEEeeccCCcceecCCccccccCCCCccceeEEEEEECCCCCeEEeeeEeeeee
Confidence            78999999999999999999999999999999999999999999998765 55779999999999999999999999999


Q ss_pred             CCCCCeeEEEecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCC
Q 011550          296 DPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGR  375 (483)
Q Consensus       296 dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~Gi  375 (483)
                      ++..||+|+++.+++++++.+|||+++.++|+.++|+||||.|.+++|.+|.+|.||||+|++++++++++++++++.|+
T Consensus        82 kt~~PG~~~n~~~~~l~~~~dwyV~~t~~~~~~~dy~~VYy~G~~~~~~~y~ga~LY~Rsp~l~peale~f~~fa~~~Gl  161 (185)
T 3cqn_A           82 DPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDYIFVYYRGRNDAWDGYGGAVVYTRSSVLPNSIIPELEKAAKSIGR  161 (185)
T ss_dssp             CSSCTTEEEECC--------EEEEEEEECSSSTTCEEEEEEEEEEETTEEEEEEEEEESSSSCCGGGHHHHHHHHHHTTC
T ss_pred             cCCCCceEEcccccccCCcccEEEEeecccCCCCCEEEEEEEeecCCCceeeeEEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999998888999999999943333499999999999988999999999999999999999999999999999


Q ss_pred             CCCCeEEcCCCCCCCCc
Q 011550          376 DFNKFIRTDNTCGPEPP  392 (483)
Q Consensus       376 D~skfi~TdQsC~~e~p  392 (483)
                      ++++|++|||+|.++|.
T Consensus       162 ~~e~~~~~dn~c~~~~~  178 (185)
T 3cqn_A          162 DFSTFIRTDNTCGPEPR  178 (185)
T ss_dssp             CGGGSEECCCCCC----
T ss_pred             CHHHEEEecCCCCCCCc
Confidence            99999999999999875
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana} Back     alignment and structure
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A Back     alignment and structure
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1 Back     alignment and structure
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A Back     alignment and structure
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A* Back     alignment and structure
>3fmz_A Retinol-binding protein 4; disease mutation, secreted, sensory transduction, transport, vision, vitamin A, transport protein; HET: 2T1; 2.90A {Homo sapiens} Back     alignment and structure
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A Back     alignment and structure
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1 Back     alignment and structure
>1kt6_A RBP, plasma retinol-binding protein; transport protein; HET: RTL; 1.10A {Bos taurus} SCOP: b.60.1.1 PDB: 1erb_A* 1fem_A* 1fen_A* 1hbp_A* 1fel_A* 1kt4_A* 1kt3_A* 1kt7_A* 1hbq_A 1aqb_A* 1kt5_A* 1rlb_E* 1rbp_A* 1brq_A 1brp_A* 1jyd_A 1jyj_A 2wqa_E* 3bsz_E* 1qab_E* ... Back     alignment and structure
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A* Back     alignment and structure
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1 Back     alignment and structure
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A Back     alignment and structure
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A* Back     alignment and structure
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens} Back     alignment and structure
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1 Back     alignment and structure
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A Back     alignment and structure
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A* Back     alignment and structure
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C Back     alignment and structure
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A Back     alignment and structure
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A Back     alignment and structure
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A* Back     alignment and structure
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ... Back     alignment and structure
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1 Back     alignment and structure
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A Back     alignment and structure
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens} Back     alignment and structure
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1 Back     alignment and structure
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A* Back     alignment and structure
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1 Back     alignment and structure
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ... Back     alignment and structure
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A* Back     alignment and structure
>1pm1_X Nitrophorin 2, NP2, prolixin-S; beta barrel, lipocalin, imidazole, ferric heme, blood clotting inhibitor; HET: HEM; 1.10A {Rhodnius prolixus} SCOP: b.60.1.1 PDB: 2all_X* 2amm_X* 2hys_A* 1euo_A* 1pee_A* 1t68_X* 2acp_X* 2ah7_X* 2al0_X* 2gtf_X* 2a3f_X* 2eu7_X* 2asn_X* Back     alignment and structure
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris} Back     alignment and structure
>1x8p_A Nitrophorin 4, NP4; lipocalin, beta barrel, ferric heme, ligand binding protein; HET: HEM; 0.85A {Rhodnius prolixus} SCOP: b.60.1.1 PDB: 1d3s_A* 1eqd_A* 1erx_A* 1ike_A* 1ikj_A* 1d2u_A* 1ml7_A* 1np4_A* 1u0x_A* 1x8n_A* 1koi_A* 1x8o_A* 1x8q_A* 1ywa_A* 1ywb_A* 1ywc_A* 1ywd_A* 2at4_X* 2at5_X* 2at6_X* ... Back     alignment and structure
>3ebk_A Allergen BLA G 4; beta barrel, cockroach, glycoprotein, secreted; 1.90A {Blattella germanica} Back     alignment and structure
>4ge1_A Biogenic amine-binding protein; lipocalin binding protein, serotonin, norepinephrine, saliva amine-binding protein; HET: TSS; 2.15A {Rhodnius prolixus} PDB: 4get_A* 4hfo_A Back     alignment and structure
>1avg_I Triabin; bovine thrombin, thrombin inhibitor, complex (blood coagulation/inhibitor); 2.60A {Triatoma pallidipennis} SCOP: b.60.1.3 Back     alignment and structure
>3kq0_A Alpha-1-acid glycoprotein 1; plasma protein, polymorphism, acute phase protein, secreted, pyrrolidone carboxylic acid, lipocalin; 1.80A {Homo sapiens} PDB: 3apu_A* 3apv_A* 3apw_A* 3apx_A* Back     alignment and structure
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0 Back     alignment and structure
>2yg2_A Apolipoprotein M; lipid transport, lipocalin, HDL; HET: S1P FLC; 1.70A {Homo sapiens} PDB: 2wex_A* 2wew_A* 2xkl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1pm1x_180 b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius 3e-20
d1i4ua_181 b.60.1.1 (A:) Alpha-crustacyanin {European lobster 4e-20
d1kxoa_171 b.60.1.1 (A:) Bilin-binding protein {Cabbage butte 1e-17
d1gkab_174 b.60.1.1 (B:) Alpha-crustacyanin {European lobster 4e-16
d1qwda_167 b.60.1.1 (A:) Outer membrane lipoprotein Blc {Esch 1e-15
d1x8qa_184 b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [Ta 1e-14
d1z24a1189 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm 2e-13
d1kt7a_175 b.60.1.1 (A:) Retinol binding protein {Cow (Bos ta 7e-13
d1beba_156 b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) 3e-10
d1ew3a_159 b.60.1.1 (A:) Lipocalin allergen {Horse (Equus cab 7e-10
d1lf7a_171 b.60.1.1 (A:) Complement protein C8gamma {Human (H 1e-07
d1x71a1174 b.60.1.1 (A:4-177) Neutrophil gelatinase-associate 7e-07
d1gm6a_158 b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) 2e-06
d1exsa_160 b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) 9e-06
d1znda1157 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u- 2e-04
d1avgi_142 b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug ( 4e-04
d1bj7a_150 b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus) 7e-04
d1jzua_157 b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturni 0.002
>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [TaxId: 13249]} Length = 180 Back     information, alignment and structure

class: All beta proteins
fold: Lipocalins
superfamily: Lipocalins
family: Retinol binding protein-like
domain: Nitrophorin 2 (prolixin-s)
species: Rhodnius prolixus [TaxId: 13249]

 Score = 86.1 bits (212), Expect = 3e-20
 Identities = 18/175 (10%), Positives = 43/175 (24%), Gaps = 18/175 (10%)

Query: 230 VKSFNIKDF-NGKWYISSGLNPSFDTFDCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRS 288
            +  +   + +GKWY++  L+      D     F    +      +      +      +
Sbjct: 10  KQGLDKAKYFSGKWYVTHFLDKDPQVTDQYCSSFTPRESDGTVKEALYHYNANKKTSFYN 69

Query: 289 AMQRF---------FQDPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGS 339
             +            +                       +L        D    V+    
Sbjct: 70  IGEGKLESSGLQYTAKYKTVDKKKAVLKEADEKNSYTLTVLE-----ADDSSALVHICVR 124

Query: 340 NDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGRDFNKFIRTDNT-CGPEPPL 393
             + D      + T  K        +++ A    G   ++F+ T +  C  +   
Sbjct: 125 EGSKDLGDVYTVLTHQKDAE--PSAKVKSAVTQAGLQLSQFVGTKDLGCQYDDQF 177
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Length = 181 Back     information, alignment and structure
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]} Length = 171 Back     information, alignment and structure
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Length = 174 Back     information, alignment and structure
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure
>d1x8qa_ b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]} Length = 184 Back     information, alignment and structure
>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} Length = 189 Back     information, alignment and structure
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 175 Back     information, alignment and structure
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]} Length = 156 Back     information, alignment and structure
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus), equ c 1 [TaxId: 9796]} Length = 159 Back     information, alignment and structure
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure
>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823]} Length = 158 Back     information, alignment and structure
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823]} Length = 160 Back     information, alignment and structure
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]} Length = 157 Back     information, alignment and structure
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]} Length = 142 Back     information, alignment and structure
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2 [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d1i4ua_181 Alpha-crustacyanin {European lobster (Homarus gamm 99.96
d1gkab_174 Alpha-crustacyanin {European lobster (Homarus gamm 99.95
d1kxoa_171 Bilin-binding protein {Cabbage butterfly (Pieris b 99.95
d1z24a1189 Insecticyanin {Tobacco hornworm (Manduca sexta) [T 99.93
d1kt7a_175 Retinol binding protein {Cow (Bos taurus) [TaxId: 99.93
d1qwda_167 Outer membrane lipoprotein Blc {Escherichia coli [ 99.92
d1x71a1174 Neutrophil gelatinase-associated lipocalin (NGAL) 99.92
d1pm1x_180 Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [Tax 99.91
d1lf7a_171 Complement protein C8gamma {Human (Homo sapiens) [ 99.91
d1ew3a_159 Lipocalin allergen {Horse (Equus caballus), equ c 99.9
d1beba_156 beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913] 99.89
d1x8qa_184 Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]} 99.88
d1epba_160 Retinoic acid-binding protein {Rat (Rattus norvegi 99.88
d1gm6a_158 Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823] 99.88
d1exsa_160 beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823] 99.87
d1znda1157 Major urinary protein/alpha-2u-globulin {Mouse (Mu 99.87
d2a2ua_158 Major urinary protein/alpha-2u-globulin {Rat (Ratt 99.86
d1jzua_157 Lipocalin q83 {Common quail (Coturnix coturnix) [T 99.86
d1avgi_142 Thrombin inhibitor {Triatomine bug (Triatoma palli 99.83
d1bj7a_150 Lipocalin allergen {Cow (Bos taurus), bos d 2 [Tax 99.72
d1gt1a_158 Odorant-binding protein {Cow (Bos taurus) [TaxId: 99.64
d1xkia_139 Von Ebner's gland protein (VEGP, tear lipocalin) { 99.61
d1e5pa_149 Aphrodisin, a sex pheromone {Golden hamster (Mesoc 99.32
d1dzka_148 Odorant-binding protein {Pig (Sus scrofa) [TaxId: 99.32
>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Back     information, alignment and structure
class: All beta proteins
fold: Lipocalins
superfamily: Lipocalins
family: Retinol binding protein-like
domain: Alpha-crustacyanin
species: European lobster (Homarus gammarus) [TaxId: 6707]

Probab=99.96  E-value=5.2e-30  Score=234.37  Aligned_cols=162  Identities=18%  Similarity=0.293  Sum_probs=137.4

Q ss_pred             CCCCCCC--cccccCCCccccCccceeeeeecCCCCCCC-CCeEEEEEEcCCceEEEeEeeEeCCCCcEEEEeeEEEEee
Q 011550          219 GEFPVPD--PAILVKSFNIKDFNGKWYISSGLNPSFDTF-DCQLHEFHTESNKLIGNLSWRIRTPDGGFFTRSAMQRFFQ  295 (483)
Q Consensus       219 g~~P~P~--p~~tv~nFDL~rF~GrWYEIAg~n~~fd~f-~Cq~a~Ytl~~dg~v~vvNsrv~tpdG~~~~~~G~arfv~  295 (483)
                      |.||..+  +..++++||+++|+|+|||||++++.|+.+ .|++++|++.+++.+.+.+.  ..++|....+.|.+. + 
T Consensus        10 g~C~~v~~~~~~~~~~fDl~~y~G~WYeia~~~~~~e~~~~c~~~~yt~~~~~~~~~~~~--~~~~G~~~~~~g~a~-~-   85 (181)
T d1i4ua_          10 GKCASVDRNKLWAEQTPNRNSYAGVWYQFALTNNPYQLIEKCVRNEYSFDGKQFVIESTG--IAYDGNLLKRNGKLY-P-   85 (181)
T ss_dssp             SCCCCCCHHHHHHHHGGGHHHHCEEEEEEEEECCSSCCEEEEEEEEEEECSSCEEEEEEE--EETTSCEEEEEEEEE-E-
T ss_pred             ccCCCCCccCCCcccCcCHHHhCEeeeEEEEeCCchhcCceeeEEEEEecCCcEEEEEEE--EecCCCEEEEEEEEE-e-
Confidence            6776533  345789999999999999999999999987 99999999988876644443  357999998888876 3 


Q ss_pred             CCCCCeeEEEecCCCcCcccceEEEEeccCCCCCCeEEEEEEccCCCCCCcceEEEEeCCCCCCchHHHHHHHHHHHcCC
Q 011550          296 DPIHPGILYNHDNEYLHYKDDWYILSSKIQNEPDDYVFVYYRGSNDAWDGYGGAFLYTRSKTVPETIVPELERAAKSVGR  375 (483)
Q Consensus       296 dp~~PGkL~vsfne~~~f~~dy~VLdTDY~~~~ddYAIVYyCg~~~a~~~yegAWLLSRdptLp~eiiekv~a~Lks~Gi  375 (483)
                      .+..++++.++|+.  .+..+||||+|||    ++||+||+|.......+..++|||||+|+++++.+++++++|++.||
T Consensus        86 ~~~~~~kl~v~f~~--~~~~~y~Vl~tDy----~~Yavvy~c~~~~~~~~~~~~wIlsR~p~l~~~~~~~~~~~~~~~G~  159 (181)
T d1i4ua_          86 NPFGEPHLSIDYEN--SFAAPLVILETDY----SNYACLYSCIDYNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNINV  159 (181)
T ss_dssp             CTTCCSSEEEEETT--SCEEEEEEEEECS----SSEEEEEEEEECTTSEEEEEEEEEESSSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCceEEEEccC--ccccceEEEEEcc----CceeEEEEeeeccCCCceeEEEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            44678899999865  3578999999999    89999999987655667789999999999999999999999999999


Q ss_pred             CCCCeEEcCC--CCCCC
Q 011550          376 DFNKFIRTDN--TCGPE  390 (483)
Q Consensus       376 D~skfi~TdQ--sC~~e  390 (483)
                      |.++|+.|+|  .|.++
T Consensus       160 d~~~l~~~~Q~~~C~~~  176 (181)
T d1i4ua_         160 DTTRFVKTVQGSSCPYD  176 (181)
T ss_dssp             CGGGEEECCCSTTSCHH
T ss_pred             CHHHeEECCCCCCCCCC
Confidence            9999999999  46554
>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus gammarus) [TaxId: 6707]} Back     information, alignment and structure
>d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]} Back     information, alignment and structure
>d1z24a1 b.60.1.1 (A:1-189) Insecticyanin {Tobacco hornworm (Manduca sexta) [TaxId: 7130]} Back     information, alignment and structure
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qwda_ b.60.1.1 (A:) Outer membrane lipoprotein Blc {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pm1x_ b.60.1.1 (X:) Nitrophorin 2 (prolixin-s) {Rhodnius prolixus [TaxId: 13249]} Back     information, alignment and structure
>d1lf7a_ b.60.1.1 (A:) Complement protein C8gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ew3a_ b.60.1.1 (A:) Lipocalin allergen {Horse (Equus caballus), equ c 1 [TaxId: 9796]} Back     information, alignment and structure
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1x8qa_ b.60.1.1 (A:) Nitrophorin 4 {Rhodnius prolixus [TaxId: 13249]} Back     information, alignment and structure
>d1epba_ b.60.1.1 (A:) Retinoic acid-binding protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gm6a_ b.60.1.1 (A:) Salivary lipocalin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jzua_ b.60.1.1 (A:) Lipocalin q83 {Common quail (Coturnix coturnix) [TaxId: 9091]} Back     information, alignment and structure
>d1avgi_ b.60.1.3 (I:) Thrombin inhibitor {Triatomine bug (Triatoma pallidipennis) [TaxId: 30077]} Back     information, alignment and structure
>d1bj7a_ b.60.1.1 (A:) Lipocalin allergen {Cow (Bos taurus), bos d 2 [TaxId: 9913]} Back     information, alignment and structure
>d1gt1a_ b.60.1.1 (A:) Odorant-binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xkia_ b.60.1.1 (A:) Von Ebner's gland protein (VEGP, tear lipocalin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e5pa_ b.60.1.1 (A:) Aphrodisin, a sex pheromone {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1dzka_ b.60.1.1 (A:) Odorant-binding protein {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure