Citrus Sinensis ID: 011570
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | 2.2.26 [Sep-21-2011] | |||||||
| P31531 | 484 | 1-aminocyclopropane-1-car | yes | no | 0.991 | 0.989 | 0.719 | 0.0 | |
| Q07262 | 491 | 1-aminocyclopropane-1-car | N/A | no | 0.997 | 0.981 | 0.650 | 0.0 | |
| Q9SAR0 | 495 | 1-aminocyclopropane-1-car | yes | no | 0.997 | 0.973 | 0.664 | 0.0 | |
| P18485 | 485 | 1-aminocyclopropane-1-car | N/A | no | 0.958 | 0.954 | 0.661 | 0.0 | |
| Q06429 | 488 | 1-aminocyclopropane-1-car | no | no | 0.968 | 0.959 | 0.636 | 0.0 | |
| Q9MB95 | 492 | 1-aminocyclopropane-1-car | N/A | no | 0.975 | 0.957 | 0.652 | 0.0 | |
| P23279 | 493 | 1-aminocyclopropane-1-car | N/A | no | 0.973 | 0.953 | 0.659 | 0.0 | |
| P23599 | 493 | 1-aminocyclopropane-1-car | N/A | no | 0.973 | 0.953 | 0.655 | 0.0 | |
| Q00379 | 494 | 1-aminocyclopropane-1-car | N/A | no | 0.975 | 0.953 | 0.656 | 0.0 | |
| P27486 | 517 | 1-aminocyclopropane-1-car | N/A | no | 0.971 | 0.907 | 0.603 | 0.0 |
| >sp|P31531|1A1C_SOYBN 1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/484 (71%), Positives = 414/484 (85%), Gaps = 5/484 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M +Q QLLSK+ G+GHGE SPYFDGWKA++ +P+HP +NPNGVIQMGLAEN L
Sbjct: 1 MGLMDVDQTQLLSKMVIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTS 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+LVEDW++NNP+ASIC+ EG+N+F+ IA FQDYHGLPEFRNAVAKFMG+ RGNR+TFDPD
Sbjct: 61 DLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAKFMGRTRGNRVTFDPD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHE FCLADPGDAFLVP PYYPGFDRDLRWRTG++LVPV+CDSSN+FK
Sbjct: 121 RIVMSGGATGAHEVTTFCLADPGDAFLVPIPYYPGFDRDLRWRTGIKLVPVMCDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
+T +ALE AYEKA+E NIR+KG+LITNPSNPLGT +DR TL+ ++SFINEK IHLV DEI
Sbjct: 181 LTKQALEDAYEKAKEDNIRVKGLLITNPSNPLGTVMDRNTLRTVMSFINEKRIHLVSDEI 240
Query: 241 YAATVFTKESSFVSIAEII--DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
Y+ATVF+ SF+SIAEI+ D DI C+RNL+HIVYSLSKDMGFPGFRVGIIYSYND VV
Sbjct: 241 YSATVFS-HPSFISIAEILEEDTDIECDRNLVHIVYSLSKDMGFPGFRVGIIYSYNDAVV 299
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358
CARKMSSFGLVS+QTQ+L+A+ML+DD+FVE F+ ESAKR+A+RH+ FT GL++VGI CL
Sbjct: 300 HCARKMSSFGLVSTQTQYLLASMLNDDEFVESFLVESAKRLAQRHRVFTGGLAKVGIKCL 359
Query: 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418
+SNAGLF+WMDL LLK+ T ++EM LWRVII+EVK+NVSPGSSFHC PGWFRVC+ANM
Sbjct: 360 QSNAGLFVWMDLRQLLKKPTLDSEMELWRVIIDEVKINVSPGSSFHCTEPGWFRVCYANM 419
Query: 419 DDRTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS-PQSP 477
DD ++IAL RI +F+L+N E VPNKK CW +LRLS+ +RR DD M SP PQSP
Sbjct: 420 DDMAVQIALQRIRNFVLQNKEIMVPNKKH-CWHSNLRLSLKTRRFDDIMMSPHSPIPQSP 478
Query: 478 LVQA 481
LV+A
Sbjct: 479 LVKA 482
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Glycine max (taxid: 3847) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q07262|1A1C_TOBAC 1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/492 (65%), Positives = 402/492 (81%), Gaps = 10/492 (2%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F +LSK+A GE+SPYFDGWKA+++DP+HP KNPNGVIQMGLAEN LC
Sbjct: 1 MGFENEKNSSILSKLATNEELGENSPYFDGWKAYDNDPFHPLKNPNGVIQMGLAENQLCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+E+W+ NP ASIC+ EG+ F+ IA FQDYHGLPEFR+A+AKFM K RG R+TFDP+
Sbjct: 61 DLIEEWIKRNPNASICTTEGIKSFRAIANFQDYHGLPEFRSAIAKFMEKTRGGRVTFDPE 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
R+VM+GGATGA+ET+ FCLAD GDAFLVP+PYYP F+RDLRWRTGVQL+P+ CDSSN+F+
Sbjct: 121 RVVMAGGATGANETIIFCLADTGDAFLVPSPYYPAFNRDLRWRTGVQLIPIPCDSSNNFQ 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
+T +A+ AYE AQ+SNI++KG+++TNPSNPLGT LDR+TLK++++F N+ NIHLVCDEI
Sbjct: 181 ITTKAVREAYENAQKSNIKVKGLILTNPSNPLGTTLDRDTLKNLLTFTNQHNIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIA-CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS 299
YAATVF FVSIAEI+D + + CN++L+HIVYSLSKDMG PGFRVGI+YS+ND VV+
Sbjct: 241 YAATVFNT-PQFVSIAEILDDETSHCNKDLVHIVYSLSKDMGLPGFRVGIVYSFNDAVVN 299
Query: 300 CARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK 359
CARKMSSFGLVS+QTQ+L+A MLSD++FV F+ ES+KR+A+RHK FT GL +VGI CL+
Sbjct: 300 CARKMSSFGLVSTQTQYLLAEMLSDERFVSNFLTESSKRLAKRHKHFTNGLEEVGIKCLR 359
Query: 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMD 419
SNAGLF WMDL LLKE T+++EM+LWRVIIN+VKLNVSPGSSF C PG+FRVCFANMD
Sbjct: 360 SNAGLFCWMDLRPLLKESTFDSEMSLWRVIINDVKLNVSPGSSFDCQEPGFFRVCFANMD 419
Query: 420 DRTMEIALSRITSF--MLKNVEAKVP--NKKKLCWQR-SLRLSMSSRRMDDFM-ASPCMS 473
D T++IAL+RI SF + K+ + P +KK W++ +LRLS S R D+ + SP S
Sbjct: 420 DETVDIALARIRSFVGVKKSGDESTPILMEKKQQWKKNNLRLSFSKRMYDESVNLSPLSS 479
Query: 474 --PQSPLVQART 483
P SPLV+ART
Sbjct: 480 PIPHSPLVRART 491
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Nicotiana tabacum (taxid: 4097) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/495 (66%), Positives = 393/495 (79%), Gaps = 13/495 (2%)
Query: 1 MAFALSNQ--VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLL 58
+AFA + + LLSKIA+G+GHGE+S YFDGWKA+E +P+HP P+GVIQMGLAEN L
Sbjct: 2 VAFATEKKQDLNLLSKIASGDGHGENSSYFDGWKAYEENPFHPIDRPDGVIQMGLAENQL 61
Query: 59 CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118
C +L+ W++ +P+ASIC++EG+N+F IAIFQDYHGLPEFR AVAKFM K R N++ FD
Sbjct: 62 CGDLMRKWVLKHPEASICTSEGVNQFSDIAIFQDYHGLPEFRQAVAKFMEKTRNNKVKFD 121
Query: 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSND 178
PDRIVMSGGATGAHETVAFCLA+PGD FLVPTPYYPGFDRDLRWRTGV LVPV C SSN
Sbjct: 122 PDRIVMSGGATGAHETVAFCLANPGDGFLVPTPYYPGFDRDLRWRTGVNLVPVTCHSSNG 181
Query: 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCD 238
FK+T+EALEAAYE A++SNI +KG+L+TNPSNPLGT LDRE LK +V+F N+K IHL+ D
Sbjct: 182 FKITVEALEAAYENARKSNIPVKGLLVTNPSNPLGTTLDRECLKSLVNFTNDKGIHLIAD 241
Query: 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
EIYAAT F +S F+S+AE+I++ CNR+LIHIVYSLSKDMG PG RVGI+YSYND+VV
Sbjct: 242 EIYAATTF-GQSEFISVAEVIEEIEDCNRDLIHIVYSLSKDMGLPGLRVGIVYSYNDRVV 300
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358
ARKMSSFGLVSSQTQHLIA MLSD++FV++FI ES R+A RH T GL +GIG L
Sbjct: 301 QIARKMSSFGLVSSQTQHLIAKMLSDEEFVDEFIRESKLRLAARHAEITTGLDGLGIGWL 360
Query: 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418
K+ AGLFLWMDL +LLK T+++E LWRVI+++VKLNVSPG SFHC PGWFRVCFANM
Sbjct: 361 KAKAGLFLWMDLRNLLKTATFDSETELWRVIVHQVKLNVSPGGSFHCHEPGWFRVCFANM 420
Query: 419 DDRTMEIALSRITSFMLKNVEAKVP--------NKKKLCWQRSLRLSMS-SRRMDD-FMA 468
D +TME AL RI F + E P KKK CWQ +LRLS S +RR DD F +
Sbjct: 421 DHKTMETALERIRVFTSQLEEETKPMAATTMMAKKKKKCWQSNLRLSFSDTRRFDDGFFS 480
Query: 469 SPCMSPQSPLVQART 483
P SPLV+A+T
Sbjct: 481 PHSPVPPSPLVRAQT 495
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Involved in bacterial flagellin-induced ethylene production. Arabidopsis thaliana (taxid: 3702) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/470 (66%), Positives = 385/470 (81%), Gaps = 7/470 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F ++ +LSK+A HGE+SPYFDGWKA++SDP+HP KNPNGVIQMGLAEN LC
Sbjct: 1 MGFEIAKTNSILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCL 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+EDW+ NPK SICS EG+ FK IA FQDYHGLPEFR A+AKFM K RG R+ FDP+
Sbjct: 61 DLIEDWIKRNPKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 119
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
R+VM+GGATGA+ET+ FCLADPGDAFLVP+PYYP F+RDLRWRTGVQL+P+ C+SSN+FK
Sbjct: 120 RVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFK 179
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
+T +A++ AYE AQ+SNI++KG+++TNPSNPLGT LD++TLK ++SF N+ NIHLVCDEI
Sbjct: 180 ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEI 239
Query: 241 YAATVFTKESSFVSIAEIIDQD--IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
YAATVF FVSIAEI+D+ CN++L+HIVYSLSKDMG PGFRVGIIYS+ND VV
Sbjct: 240 YAATVFDT-PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVV 298
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358
+CARKMSSFGLVS+QTQ+ +A MLSD++FV+ F+ ESA R+ +RHK FT GL VGI CL
Sbjct: 299 NCARKMSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 358
Query: 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418
K+NAGLF WMDL LL+E T+++EM+LWRVIIN+VKLNVSPGSSF C PGWFRVCFANM
Sbjct: 359 KNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANM 418
Query: 419 DDRTMEIALSRITSF--MLKNVEAKVPNKKKLCWQR-SLRLSMSSRRMDD 465
DD T++IAL+RI F + K+ + +KK W++ +LRLS S R D+
Sbjct: 419 DDGTVDIALARIRRFVGVEKSGDKSSSMEKKQQWKKNNLRLSFSKRMYDE 468
|
1-aminocyclopropane-1-carboxylate synthase (ACS) enzymes catalyze the conversion of S-adenosyl-L-methionine (SAM) into 1-aminocyclopropane-1-carboxylate (ACC), a direct precursor of ethylene. Solanum lycopersicum (taxid: 4081) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q06429|1A11_ARATH 1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Arabidopsis thaliana GN=ACS1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/484 (63%), Positives = 390/484 (80%), Gaps = 16/484 (3%)
Query: 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMN 69
QLLSK+A + HGE SPYF GWKA++++P+HPT NP GVIQMGLAEN LC +L+++W+
Sbjct: 9 QLLSKLALSDKHGEASPYFHGWKAYDNNPFHPTHNPQGVIQMGLAENQLCSDLIKEWIKE 68
Query: 70 NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT 129
NP+ASIC+AEG++ F IA+FQDYHGL +FR A+A FM + RG R+ F+ +R+VMSGGAT
Sbjct: 69 NPQASICTAEGIDSFSDIAVFQDYHGLKQFRQAIATFMERARGGRVRFEAERVVMSGGAT 128
Query: 130 GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
GA+ET+ FCLADPGDAFLVPTPYY FDRDLRWRTGV+++PV C SSN+F++T +ALE+A
Sbjct: 129 GANETIMFCLADPGDAFLVPTPYYAAFDRDLRWRTGVRIIPVECSSSNNFQITKQALESA 188
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249
Y KAQE+ I+IKG++I SNPLGT LDRETL+ +VSFIN+K IHLVCDEIYAATVF E
Sbjct: 189 YLKAQETGIKIKGLII---SNPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFA-E 244
Query: 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL 309
F+S+AEII + NR+LIHIVYSLSKDMG PGFRVG++YSYND VVSCAR+MSSFGL
Sbjct: 245 PGFISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGL 304
Query: 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMD 369
VSSQTQ +A MLSD FV+ F+ E +KR+A+RH FT GL ++GI CL+SNAGLF+ MD
Sbjct: 305 VSSQTQSFLAAMLSDQSFVDNFLVEVSKRVAKRHHMFTEGLEEMGISCLRSNAGLFVLMD 364
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L H+LK+QT+++EMALWRVIIN+VK+NVSPGSSFHC PGWFRVCFANMD+ T++IAL R
Sbjct: 365 LRHMLKDQTFDSEMALWRVIINKVKINVSPGSSFHCSEPGWFRVCFANMDEDTLQIALER 424
Query: 430 ITSFMLKN-----------VEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASP-CMSPQSP 477
I F++ + K NKK+ +Q++L+LS+SS R ++ + SP MSP SP
Sbjct: 425 IKDFVVGDRANKNKNCNCICNNKRENKKRKSFQKNLKLSLSSMRYEEHVRSPKLMSPHSP 484
Query: 478 LVQA 481
L++A
Sbjct: 485 LLRA 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MB95|1A11_PRUMU 1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/483 (65%), Positives = 378/483 (78%), Gaps = 12/483 (2%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
LLSKIA GHGE+SPYFDGWKA++ +P+HPTKNP GVIQMGLAEN L + +EDW+ N
Sbjct: 12 LLSKIATSEGHGENSPYFDGWKAYDRNPFHPTKNPEGVIQMGLAENQLSFDSIEDWIKKN 71
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
PKASIC+ EG+ EFK +AIFQDYHG PEFR AVA FM K RG R+TFDP+R+VMSGGATG
Sbjct: 72 PKASICTPEGVEEFKNVAIFQDYHGFPEFRKAVAMFMSKARGGRVTFDPNRVVMSGGATG 131
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A+E V FCLADPGDAFLVP+PYYP F RDL WRTGVQ+VPV CDSSN+FK+T EALEAAY
Sbjct: 132 ANELVMFCLADPGDAFLVPSPYYPAFFRDLGWRTGVQIVPVDCDSSNNFKITKEALEAAY 191
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
EKAQ++NI +KG++ITNPSNPLGT LDR TL+ +V FIN+KNIHLVCDEIYAATVF+
Sbjct: 192 EKAQKNNINVKGLIITNPSNPLGTTLDRNTLESLVEFINQKNIHLVCDEIYAATVFS-SP 250
Query: 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV 310
+F I+E+I Q++ CN NLIHIVYSLSKDMG PG RVGI+YSYND VV+ RKMSSFGLV
Sbjct: 251 TFTCISEVI-QNMNCNPNLIHIVYSLSKDMGLPGLRVGIVYSYNDDVVNIGRKMSSFGLV 309
Query: 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
SSQTQH++ +ML D++FV +F+ S KR+A+RH FT GL +VGI CLKSNAGLF WMDL
Sbjct: 310 SSQTQHMLPSMLLDEEFVARFLETSPKRLAKRHGVFTKGLEEVGINCLKSNAGLFCWMDL 369
Query: 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
LL++QT++ EM LWRVI+NEV NVSPGSSF C PGWFRVCFANMDD T+E+AL RI
Sbjct: 370 RRLLEDQTFDGEMVLWRVIVNEVGPNVSPGSSFKCVEPGWFRVCFANMDDETLEVALKRI 429
Query: 431 TSFMLKN-------VEAKVPNKKK---LCWQRSLRLSMSSRRMDDFMASPCMSPQSPLVQ 480
+F+ + V+ K P + K S + + ++ MSP SPLV+
Sbjct: 430 RTFVRQGKKAQDQVVQVKSPKRWKSNLRLSFSSSSTRRFDQESVNVLSPHMMSPHSPLVR 489
Query: 481 ART 483
A+T
Sbjct: 490 AKT 492
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Prunus mume (taxid: 102107) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P23279|1A11_CUCPE 1-aminocyclopropane-1-carboxylate synthase 1 OS=Cucurbita pepo GN=ACC1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/482 (65%), Positives = 385/482 (79%), Gaps = 12/482 (2%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
LLSKIA +GHGE+SPYFDGWKA+++DP+HP NP GVIQMGLAEN L +++ DW+ +
Sbjct: 13 LLSKIALDDGHGENSPYFDGWKAYDNDPFHPENNPLGVIQMGLAENQLSFDMIVDWIRKH 72
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
P+ASIC+ EGL FK IA FQDYHGLPEFRNA+A FMGKVRG R+ FDP RIVM GGATG
Sbjct: 73 PEASICTPEGLERFKSIANFQDYHGLPEFRNAIANFMGKVRGGRVKFDPSRIVMGGGATG 132
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A ETV FCLADPGDAFLVP+PYY GFDRDL+WRT Q++ V C+ SN+F+VT ALE AY
Sbjct: 133 ASETVIFCLADPGDAFLVPSPYYAGFDRDLKWRTRAQIIRVHCNGSNNFQVTKAALEIAY 192
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
+KAQE+N+++KGV+ITNPSNPLGT DR+TLK +V+F+N+ +IHL+CDEIY+ATVF K
Sbjct: 193 KKAQEANMKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVF-KAP 251
Query: 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV 310
+F SIAEI++Q C + LIHI+YSLSKDMG PGFRVGIIYSYND VV AR+MSSFGLV
Sbjct: 252 TFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
SSQTQHL+A MLSD+ FV+KF+AE++KR+ ERH FT L ++GI CL SNAG+F+WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRVGERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
LLK+QT++AEM LWRVIINEVKLNVSPGSSFH PGWFRVCFANMDD T+++AL+RI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 431 TSFMLKNVEAKVPN-----KKKLCWQRSLRL--SMSSRRMDD--FMASP-CMSPQSPLVQ 480
SF ++N++ K N K LRL S S RR D+ + SP MSP SPLV
Sbjct: 432 HSF-VENIDKKEDNTVAMPSKTRHRDNKLRLSFSFSGRRYDEGNVLNSPHTMSPHSPLVI 490
Query: 481 AR 482
A+
Sbjct: 491 AK 492
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita pepo (taxid: 3663) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P23599|1A11_CUCMA 1-aminocyclopropane-1-carboxylate synthase CMW33 OS=Cucurbita maxima GN=ACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/482 (65%), Positives = 387/482 (80%), Gaps = 12/482 (2%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
LLSKIA +GHGE+SPYFDGWKA+++DP+HP NP GVIQMGLAEN L +++ DW+ +
Sbjct: 13 LLSKIAVDDGHGENSPYFDGWKAYDNDPFHPEDNPLGVIQMGLAENQLSFDMIVDWIRKH 72
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
P+ASIC+ +GL FK IA FQDYHGLPEFRN +A FMGKVRG R+ FDP RIVM GGATG
Sbjct: 73 PEASICTPKGLERFKSIANFQDYHGLPEFRNGIASFMGKVRGGRVQFDPSRIVMGGGATG 132
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A ETV FCLADPGDAFLVP+PYY FDRDL+WRT Q++ V C+SSN+F+VT ALE AY
Sbjct: 133 ASETVIFCLADPGDAFLVPSPYYAAFDRDLKWRTRAQIIRVHCNSSNNFQVTKAALEIAY 192
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
+KAQE+NI++KGV+ITNPSNPLGT DR+TLK +V+F+N+ +IHL+CDEIY+ATVF K
Sbjct: 193 KKAQEANIKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVF-KAP 251
Query: 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV 310
+F+SIA+I+++ C + LIHI+YSLSKDMG PGFRVGIIYSYND VV AR+MSSFGLV
Sbjct: 252 TFISIAQIVEEMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
SSQTQHL+A MLSD+ FV+KF+AE++KR+AERH FT L ++GI CL SNAG+F+WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRLAERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
LLK+QT++AEM LWRVIINEVKLNVSPGSSFH PGWFRVCFANMDD T+++AL+RI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 431 TSFMLKNVEAKVPN-----KKKLCWQRSLRL--SMSSRRMDD--FMASP-CMSPQSPLVQ 480
SF ++N++ K N K + LRL S S RR D+ + SP MSP SPLV
Sbjct: 432 HSF-VENIDKKEDNTVAMPSKTRRRENKLRLSFSFSGRRYDEGNVLNSPHTMSPHSPLVI 490
Query: 481 AR 482
A+
Sbjct: 491 AK 492
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita maxima (taxid: 3661) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q00379|1A12_CUCPE 1-aminocyclopropane-1-carboxylate synthase 2 OS=Cucurbita pepo GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/483 (65%), Positives = 385/483 (79%), Gaps = 12/483 (2%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
LLSKIA +GHGE+S YFDGWKA++++P+HP NP GVIQMGLAEN L ++ DW+ +
Sbjct: 13 LLSKIAIDDGHGENSAYFDGWKAYDNNPFHPENNPLGVIQMGLAENQLSFGMIVDWIRKH 72
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
P+ASIC+ EGL +FK IA FQDYHGL EFR A+A FMGKVRG R+ FDP RIVM GGATG
Sbjct: 73 PEASICTPEGLEKFKSIANFQDYHGLQEFRKAMASFMGKVRGGRVKFDPSRIVMGGGATG 132
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A ETV FCLADPGDAFLVP+PYY FDRDL+WRT Q++PV C+SSN+F+VT ALE AY
Sbjct: 133 ASETVIFCLADPGDAFLVPSPYYAAFDRDLKWRTRAQIIPVHCNSSNNFQVTEAALEIAY 192
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
+KAQE+N+++KGV+ITNPSNPLGT DR+TLK +V+F+N+ +IHL+CDEIY+ATVF K
Sbjct: 193 KKAQEANMKVKGVIITNPSNPLGTTYDRDTLKTLVTFVNQHDIHLICDEIYSATVF-KAP 251
Query: 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV 310
+F SIAEI++Q C + LIHI+YSLSKDMG PGFRVGIIYSYND VV AR+MSSFGLV
Sbjct: 252 TFTSIAEIVEQMEHCKKELIHILYSLSKDMGLPGFRVGIIYSYNDVVVRRARQMSSFGLV 311
Query: 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
SSQTQHL+A MLSD+ FV+KF+AE++KR+ ERH FT L ++GI CL SNAG+F+WMDL
Sbjct: 312 SSQTQHLLAAMLSDEDFVDKFLAENSKRLGERHARFTKELDKMGITCLNSNAGVFVWMDL 371
Query: 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
LLK+QT++AEM LWRVIINEVKLNVSPGSSFH PGWFRVCFANMDD T+++AL+RI
Sbjct: 372 RRLLKDQTFKAEMELWRVIINEVKLNVSPGSSFHVTEPGWFRVCFANMDDNTVDVALNRI 431
Query: 431 TSFMLKNVEAKVPN-----KKKLCWQRSLRL--SMSSRRMD--DFMASP-CMSPQSPLVQ 480
SF ++N++ K N K LRL S S RR D + + SP MSP SPLV+
Sbjct: 432 HSF-VENIDKKEDNTVAMPSKTRHRDNKLRLSFSFSGRRYDKGNVLNSPHTMSPHSPLVR 490
Query: 481 ART 483
ART
Sbjct: 491 ART 493
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Cucurbita pepo (taxid: 3663) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/512 (60%), Positives = 384/512 (75%), Gaps = 43/512 (8%)
Query: 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMN 69
++LSKIA +GHGE+ YFDGWKA++ DPYH TKN NGVIQMGLAEN LC +LV +WL+
Sbjct: 11 EILSKIATNDGHGENLEYFDGWKAYDRDPYHSTKNSNGVIQMGLAENQLCFDLVTEWLLK 70
Query: 70 NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT 129
NP+ASIC+ EG+N+F IAIFQDYHGLPEFR+AVAKFMGK R ++ F+PDRIVMSGGA+
Sbjct: 71 NPQASICTNEGVNKFMDIAIFQDYHGLPEFRSAVAKFMGKARDEKVIFNPDRIVMSGGAS 130
Query: 130 GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
A ET+ FCLA+PGDAFL+P+PYYP F+RDLRWRTGV L+P C SSN+FK+T EAL++A
Sbjct: 131 -ASETLLFCLANPGDAFLIPSPYYPAFNRDLRWRTGVNLIPFTCSSSNNFKITKEALQSA 189
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249
YE A + NI++KG+++TNPSNPLGT LD++TLK +++F+N KNIHLVCDEIYA TVF
Sbjct: 190 YEDALKKNIKVKGIIVTNPSNPLGTVLDKDTLKMLLTFVNAKNIHLVCDEIYATTVFN-S 248
Query: 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL 309
SF+S+AE+I N++L+HI+YSLSKDMG PGFRVGIIYSYND+VVS AR+MSSFGL
Sbjct: 249 PSFISVAEVIKDMPHVNQDLVHILYSLSKDMGMPGFRVGIIYSYNDRVVSTARRMSSFGL 308
Query: 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMD 369
VSSQTQ +IA +LSDD FV +F+ ES R+ RH+ FT L+++GIGCL+ NA LF+WMD
Sbjct: 309 VSSQTQFMIAALLSDDDFVRRFLVESRDRLFRRHQHFTSELAKIGIGCLQGNAALFVWMD 368
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L HLL E T E E+ LWRVIINEVK+NVSPGSSF C PGWFRVCFANMD+ T+++AL+R
Sbjct: 369 LRHLLDEATVERELKLWRVIINEVKINVSPGSSFLCSEPGWFRVCFANMDNATLDVALNR 428
Query: 430 ITSFMLKNVEAKVPNK------------------------------KKLCWQRSLRLSMS 459
I SF+ + +V N KK Q LRLS +
Sbjct: 429 IRSFVTR---GRVDNSTMTTTSARAAATTTTTTTTTTTTTTTTTTIKKKRGQMELRLSFN 485
Query: 460 SRRMDDFMASP--------CMSPQSPLVQART 483
+RR +D + SP PQSPLV+ART
Sbjct: 486 NRRFEDGLMSPHSILLSPHSPMPQSPLVKART 517
|
Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants. Dianthus caryophyllus (taxid: 3570) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | ||||||
| 6433834 | 483 | ACC synthase [Citrus sinensis] gi|643383 | 1.0 | 1.0 | 0.997 | 0.0 | |
| 7208821 | 403 | ACC synthase [Citrus sinensis] | 0.821 | 0.985 | 0.989 | 0.0 | |
| 262225284 | 487 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.985 | 0.772 | 0.0 | |
| 7209853 | 487 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.985 | 0.770 | 0.0 | |
| 157921986 | 483 | 1-aminocyclopropane 1-carboxylate syntha | 0.997 | 0.997 | 0.770 | 0.0 | |
| 18252347 | 487 | 1-aminocyclopropane 1-carboxylate syntha | 0.993 | 0.985 | 0.753 | 0.0 | |
| 320462454 | 487 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.985 | 0.765 | 0.0 | |
| 7209851 | 487 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.985 | 0.761 | 0.0 | |
| 262225282 | 487 | 1-aminocyclopropane-1-carboxylate syntha | 0.993 | 0.985 | 0.755 | 0.0 | |
| 1877497 | 489 | 1-aminocyclopropane-1-carboxylate syntha | 0.981 | 0.969 | 0.755 | 0.0 |
| >gi|6433834|emb|CAB60721.1| ACC synthase [Citrus sinensis] gi|6433836|emb|CAB60722.1| ACC synthase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/483 (99%), Positives = 482/483 (99%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH
Sbjct: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD
Sbjct: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK
Sbjct: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI
Sbjct: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVFTKE SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC
Sbjct: 241 YAATVFTKEPSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS
Sbjct: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD
Sbjct: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMSPQSPLVQ 480
RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMSPQSPLVQ
Sbjct: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMSPQSPLVQ 480
Query: 481 ART 483
ART
Sbjct: 481 ART 483
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7208821|emb|CAB76930.1| ACC synthase [Citrus sinensis] | Back alignment and taxonomy information |
|---|
Score = 823 bits (2126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/397 (98%), Positives = 395/397 (99%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
MAFALSNQ QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH
Sbjct: 1 MAFALSNQEQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
ELVEDWLMNNPKASICSAEGLNEFKGIA FQDYHGLPEFRNAVAKFMGKVRGNR+TFDPD
Sbjct: 61 ELVEDWLMNNPKASICSAEGLNEFKGIANFQDYHGLPEFRNAVAKFMGKVRGNRVTFDPD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK
Sbjct: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI
Sbjct: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC
Sbjct: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS
Sbjct: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397
NAGLFLWMDLHHLLKEQTYEAEMALW+VIINEVKLNV
Sbjct: 361 NAGLFLWMDLHHLLKEQTYEAEMALWQVIINEVKLNV 397
|
Source: Citrus sinensis Species: Citrus sinensis Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|262225284|gb|ACT54524.2| 1-aminocyclopropane-1-carboxylate synthase [Eriobotrya japonica] gi|270160611|gb|ACZ63266.1| 1-aminocyclopropane-1-carboxylate synthase [Eriobotrya japonica] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/487 (77%), Positives = 430/487 (88%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F LSNQ QLLSKIA GNGHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTLSNQQQLLSKIATGNGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLAENQMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++NNP+ASIC+A G+NEFK IAIFQDYHGLPEFRNAVA FMGKVRGNR+TFD D
Sbjct: 61 DLIQEWILNNPEASICTAAGVNEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHE +AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+FK
Sbjct: 121 RIVMSGGATGAHEMIAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLIPVACDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
T ALEAAYEKAQ++NIR+KG+LITNPSNPLGT LDR+TL+ +V+FINEK IHLVCDEI
Sbjct: 181 FTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVLDRDTLRSLVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF +SSF+SIAEII+++I CNRNLIHIVYSLSKDMGFPGFRVGIIYSYND VV+C
Sbjct: 241 YAATVF-NQSSFISIAEIIEENIGCNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDAVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FV++FIA+SAKR+ RH FT GL+QVG CLKS
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVKRFIAQSAKRLKTRHMRFTMGLAQVGTSCLKS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLK+QT+EAEM LWR II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKDQTFEAEMVLWRTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TME+AL+RI +F+L++ EA VP K WQ +LRLS SRRMDD M SPCM P
Sbjct: 420 KTMEVALTRIRTFVLQDKEAIVPRKSNRLWQSNLRLSFQSRRMDDNMMSPCMMSPHTPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Eriobotrya japonica Species: Eriobotrya japonica Genus: Eriobotrya Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7209853|dbj|BAA92351.1| 1-aminocyclopropane-1-carboxylate synthase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/487 (77%), Positives = 428/487 (87%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F LSNQ QLLSKIA GNGHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTLSNQQQLLSKIATGNGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLAENQMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++NNP+ASIC+A G+NEFK IAIFQDYHGLPEFRNAVA FMGKVRGNR+TFD D
Sbjct: 61 DLIQEWILNNPEASICTAAGVNEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHE +AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+FK
Sbjct: 121 RIVMSGGATGAHEMIAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLIPVACDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ++NIR+KG+LITNPSNPLGT LDR+TL +V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVLDRDTLISLVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF+SIAEII+++I CNRNLIHIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFISIAEIIEENIGCNRNLIHIVYSLSKDMGFPGFRVGIVYSYNDAVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FV++FIA+SAKR+ RH FT GL+QV CLKS
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVKRFIAQSAKRLKTRHMRFTMGLAQVSTNCLKS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLKEQT+EAEM LWR II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKEQTFEAEMVLWRTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TME+AL+RI +F+L+N EA VP K W +LRLS SRRMDD M SPCM P
Sbjct: 420 KTMEVALTRIRTFVLQNKEAIVPRKSNRLWHSNLRLSFQSRRMDDTMMSPCMMSPHTPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|157921986|gb|ABW03086.1| 1-aminocyclopropane 1-carboxylate synthase 5 [Prunus salicina] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/484 (77%), Positives = 423/484 (87%), Gaps = 2/484 (0%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F +SNQ QLLSK+A GNGH E+SPYFDGWKA++S+P+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTVSNQQQLLSKMATGNGHSENSPYFDGWKAYDSNPFHPTKNPNGVIQMGLAENQVCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+E+W++ NP+ASIC A G+NEFK IAIFQDYHGLPEFRNAVA FMGK RGN++TFDPD
Sbjct: 61 DLIEEWVLKNPEASICPAAGVNEFKDIAIFQDYHGLPEFRNAVANFMGKARGNQVTFDPD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHE +AFCLADP DAFLVP PYYPGFDRDL WRTGVQL+PV C+SSN FK
Sbjct: 121 RIVMSGGATGAHEMIAFCLADPRDAFLVPVPYYPGFDRDLGWRTGVQLIPVACESSNSFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ+ NIR+KG+LITNPSNPLGT LDRETL+ +V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKDNIRVKGLLITNPSNPLGTVLDRETLRSLVAFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF+SIAEII+ DI C+RNL+HIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFISIAEIIEDDIECDRNLVHIVYSLSKDMGFPGFRVGIVYSYNDAVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD+ FV++FIA+SAKR+ RH FT GL+QVG CLKS
Sbjct: 300 ARKMSSFGLVSAQTQHLIASMLSDNDFVDRFIAQSAKRLKARHMRFTMGLAQVGTSCLKS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLFLWMDLH LLKEQT+EAEMALW II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFLWMDLHKLLKEQTFEAEMALWHTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPC-MSPQSPLV 479
TMEIAL+RI +F+L++ EA P K WQ SLRLS SRR DD M SPC MSPQSPLV
Sbjct: 420 MTMEIALTRIRTFVLQDKEAVAPRKNNRFWQSSLRLSFQSRRKDDIMMSPCMMSPQSPLV 479
Query: 480 QART 483
+A T
Sbjct: 480 RAMT 483
|
Source: Prunus salicina Species: Prunus salicina Genus: Prunus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18252347|gb|AAL66205.1|AF386523_1 1-aminocyclopropane 1-carboxylate synthase 5 [Pyrus communis] | Back alignment and taxonomy information |
|---|
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/487 (75%), Positives = 426/487 (87%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F LSNQ QLLSK+A G+GHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGL EN +C
Sbjct: 1 MGFTLSNQQQLLSKMATGDGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLRENEMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++NNP+ASIC+A G+NEFK IAIFQDYHGLPEFRNAV FMG+VRGNR+TFD D
Sbjct: 61 DLIQEWVLNNPEASICTAAGVNEFKDIAIFQDYHGLPEFRNAVTNFMGRVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHET+AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+F+
Sbjct: 121 RIVMSGGATGAHETIAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLIPVACDSSNNFE 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ++NIR+KG+LITNPSNPLGT LDR+TL+ V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVLDRDTLRSSVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF+SIAEII+++I CNRNLIHIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFISIAEIIEENIGCNRNLIHIVYSLSKDMGFPGFRVGIVYSYNDAVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FVE+FIA+SAKR+ RH FT L+QVG CLKS
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVERFIAQSAKRLKTRHMRFTMELAQVGTSCLKS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLKEQT+EAEM LWR II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKEQTFEAEMELWRTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TME+AL+RI +F+L++ EA VP K W+ +L + SRRMDD M SPCM P
Sbjct: 420 KTMEVALTRIRTFVLQDKEAIVPRKSNRLWKATLGSAFQSRRMDDNMMSPCMMSPHTPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Pyrus communis Species: Pyrus communis Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|320462454|dbj|BAJ65574.1| 1-aminocyclopropane-1-carboxylate synthase [Pyrus pyrifolia var. culta] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/487 (76%), Positives = 425/487 (87%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F L NQ QLLSKIA GNGHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTLGNQQQLLSKIATGNGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLAENEMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++NNP+ASIC+A G+NEFK IAIFQDYHGLPEFRNAVA FMGKVRGNR+TFD D
Sbjct: 61 DLIQEWVLNNPEASICTAAGVNEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHET+AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+FK
Sbjct: 121 RIVMSGGATGAHETMAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLIPVACDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ++NIR+KG+LITNPSNPLGT LDR+TL+ +V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVLDRDTLRSLVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF+SIAEII++DI CNRNLIHIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFISIAEIIEEDIECNRNLIHIVYSLSKDMGFPGFRVGIVYSYNDDVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FVE+FIA+SAKR+ RH FT L+QVG CLKS
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVERFIAQSAKRLKARHMRFTMELAQVGTSCLKS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLKEQT++AEM LW II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKEQTFDAEMVLWHKIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TMEIALSRI +F+ + E P K W+ +LRLS SRRMDD M SPCM P
Sbjct: 420 KTMEIALSRIRNFVAQFKEPIAPRKNNRYWKSNLRLSFQSRRMDDIMMSPCMMSPHSPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Pyrus pyrifolia var. culta Species: Pyrus pyrifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7209851|dbj|BAA92350.1| 1-aminocyclopropane-1-carboxylate synthase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/487 (76%), Positives = 422/487 (86%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F LSNQ QLLSKIA NGHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTLSNQQQLLSKIATSNGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLAENEMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++NNP+ASIC+A G+NEFK IAIFQDYHGLP FRNAVA FMGKVRGNR+TFD D
Sbjct: 61 DLIQEWVLNNPEASICTAAGVNEFKDIAIFQDYHGLPVFRNAVANFMGKVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHET+AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+FK
Sbjct: 121 RIVMSGGATGAHETIAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLMPVACDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ++NIR+KG+LITNPSNPLGT LDR+TL+ +V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVLDRDTLRSLVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF+SIAEII+++I CNRNLIHIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFISIAEIIEENIECNRNLIHIVYSLSKDMGFPGFRVGIVYSYNDDVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FVE+FIA+SAKR+ RH FT L QVG CL S
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVERFIAQSAKRLKARHMRFTMELDQVGTSCLNS 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLKEQT+EAEM LW II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKEQTFEAEMVLWHTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TMEIAL+RI +F+ + E P K WQ +LRLS SRRMDD M SPCM P
Sbjct: 420 KTMEIALTRIRNFVAQYKEPIAPRKNNRYWQSNLRLSFQSRRMDDIMMSPCMMSPHSPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|262225282|gb|ACT54523.3| 1-aminocyclopropane-1-carboxylate synthase [Eriobotrya japonica] | Back alignment and taxonomy information |
|---|
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/487 (75%), Positives = 421/487 (86%), Gaps = 7/487 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M F LSNQ QLLSKIA GNGHGE+SPYFDGWKA++SDP+HPTKNPNGVIQMGLAEN +C
Sbjct: 1 MGFTLSNQQQLLSKIATGNGHGENSPYFDGWKAYDSDPFHPTKNPNGVIQMGLAENEMCF 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+++W++ NP+ASIC+A G+NEFK IAIFQDYHGLPEFRNAVA FMGKVRGNR+TFD D
Sbjct: 61 DLIQEWVLTNPEASICTAAGVNEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVTFDAD 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIVMSGGATGAHET+AFCLADPGDAFLVP PYYPGFDRDL WRTGVQL+PV CDSSN+FK
Sbjct: 121 RIVMSGGATGAHETIAFCLADPGDAFLVPVPYYPGFDRDLGWRTGVQLIPVACDSSNNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT ALEAAYEKAQ++NIR+KG+LITNPSNPLGT +DR+TL+ +V+FINEK IHLVCDEI
Sbjct: 181 VTRAALEAAYEKAQKANIRVKGLLITNPSNPLGTVIDRDTLRSLVTFINEKKIHLVCDEI 240
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300
YAATVF+ + SF SIAEII+++I CNRNLIHIVYSLSKDMGFPGFRVGI+YSYND VV+C
Sbjct: 241 YAATVFS-QPSFTSIAEIIEENIECNRNLIHIVYSLSKDMGFPGFRVGIVYSYNDDVVNC 299
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
ARKMSSFGLVS+QTQHLIA+MLSD++FVE+FIA+SA+R+ RH FT L+QV CL
Sbjct: 300 ARKMSSFGLVSTQTQHLIASMLSDNEFVERFIAQSAERLKARHMRFTMELAQVRTSCLNG 359
Query: 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420
N GLF+WMDL LLKEQT+EAEM LW+ II+EVKLNVSPGSSFHCP PGWFRVCFANMDD
Sbjct: 360 NGGLFVWMDLRRLLKEQTFEAEMVLWQTIIHEVKLNVSPGSSFHCPEPGWFRVCFANMDD 419
Query: 421 RTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRMDDFMASPCMS------P 474
+TMEIAL+RI +FM + E P K WQ +LRLS SRRMDD M PCM P
Sbjct: 420 KTMEIALTRIRNFMAQYKEPIAPRKNNRYWQSNLRLSFQSRRMDDVMMPPCMMSPHSPIP 479
Query: 475 QSPLVQA 481
QSPLV+A
Sbjct: 480 QSPLVRA 486
|
Source: Eriobotrya japonica Species: Eriobotrya japonica Genus: Eriobotrya Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1877497|gb|AAB70885.1| 1-aminocyclopropane-1-carboxylate synthase [Pelargonium x hortorum] gi|147883096|gb|ABQ51844.1| 1-aminocyclopropane-1-carboxylate synthase [Pelargonium x hortorum] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/483 (75%), Positives = 423/483 (87%), Gaps = 9/483 (1%)
Query: 6 SNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVED 65
+NQ LLSK+A G+GHGE+SPYFDGWKA++++P+H T+NP GVIQMGLAEN L EL+E
Sbjct: 8 TNQRTLLSKMATGDGHGENSPYFDGWKAYDNNPFHLTQNPQGVIQMGLAENQLSFELIEQ 67
Query: 66 WLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125
W++NNP+ASIC+A+GL EFK AIFQDYHGLPEFR AVA FMGKVRGNR+TF+PDRIVMS
Sbjct: 68 WVLNNPQASICTAQGLQEFKDTAIFQDYHGLPEFRYAVANFMGKVRGNRVTFNPDRIVMS 127
Query: 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEA 185
GGATGAHE +AFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL+PVVC+S N+F++T A
Sbjct: 128 GGATGAHEMIAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLIPVVCESENNFRITRSA 187
Query: 186 LEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245
LE AYE+AQE NIR+KG+LITNPSNPLGT LDRETL +VSFINEKNIHLVCDEIYAATV
Sbjct: 188 LEEAYERAQEDNIRVKGLLITNPSNPLGTILDRETLVSLVSFINEKNIHLVCDEIYAATV 247
Query: 246 FTKESSFVSIAEIIDQD-IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM 304
F+ + +FVSIAE+I+Q+ ++CNR+LIHIVYSLSKDMGFPGFRVGI+YSYND VV+CARKM
Sbjct: 248 FS-QPAFVSIAEVIEQENVSCNRDLIHIVYSLSKDMGFPGFRVGIVYSYNDAVVNCARKM 306
Query: 305 SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364
SSFGLVS+QTQHLIA+MLSDD+FV+ FI ESAKR+A R+ FT GL+QV IGCLKSN GL
Sbjct: 307 SSFGLVSTQTQHLIASMLSDDEFVDTFIVESAKRLARRYTTFTRGLAQVNIGCLKSNGGL 366
Query: 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424
F+WMDL LLKE+T+EAEMALWRVIINEVKLNVSPG+SFHC PGWFRVCFANMDD TM+
Sbjct: 367 FIWMDLRRLLKEKTFEAEMALWRVIINEVKLNVSPGASFHCSEPGWFRVCFANMDDLTMQ 426
Query: 425 IALSRITSFMLKNVEAKV-PNKKKLCWQRSL-RLSMSSRRMDDFMASPCMSP----QSPL 478
+AL RI +F L+N EA V P K+ CWQ +L RLS+S RR DDF SP MSP QSPL
Sbjct: 427 VALRRIITFALQNKEAAVLPAIKRQCWQNNLGRLSLSFRRFDDFTMSP-MSPHSPIQSPL 485
Query: 479 VQA 481
V+A
Sbjct: 486 VRA 488
|
Source: Pelargonium x hortorum Species: Pelargonium x hortorum Genus: Pelargonium Family: Geraniaceae Order: Geraniales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 483 | ||||||
| TAIR|locus:2128298 | 495 | ACS6 "1-aminocyclopropane-1-ca | 0.997 | 0.973 | 0.652 | 4.3e-173 | |
| TAIR|locus:2082817 | 488 | ACS1 "ACC synthase 1" [Arabido | 0.968 | 0.959 | 0.628 | 9.7e-167 | |
| TAIR|locus:2025361 | 496 | ACS2 "1-amino-cyclopropane-1-c | 0.981 | 0.955 | 0.610 | 1.6e-164 | |
| UNIPROTKB|Q9SXN8 | 473 | pPPACS1 "1-aminocyclopropane-1 | 0.877 | 0.896 | 0.554 | 1.9e-138 | |
| UNIPROTKB|P37821 | 473 | ACS-1 "1-aminocyclopropane-1-c | 0.877 | 0.896 | 0.554 | 1.1e-137 | |
| TAIR|locus:2097350 | 470 | ACS9 "1-aminocyclopropane-1-ca | 0.896 | 0.921 | 0.556 | 1.7e-137 | |
| TAIR|locus:2137579 | 469 | ACS8 "1-amino-cyclopropane-1-c | 0.875 | 0.901 | 0.571 | 1.7e-137 | |
| UNIPROTKB|O80334 | 467 | O80334 "1-aminocyclopropane-1- | 0.879 | 0.910 | 0.565 | 2.8e-137 | |
| UNIPROTKB|A1IIT7 | 473 | PbACS1B "1-aminocyclopropane-1 | 0.877 | 0.896 | 0.552 | 5.8e-137 | |
| UNIPROTKB|Q6TRG0 | 474 | ACS1b "1-aminocyclopropane-1-c | 0.877 | 0.894 | 0.549 | 1.2e-136 |
| TAIR|locus:2128298 ACS6 "1-aminocyclopropane-1-carboxylic acid (acc) synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1682 (597.2 bits), Expect = 4.3e-173, P = 4.3e-173
Identities = 323/495 (65%), Positives = 384/495 (77%)
Query: 1 MAFALSNQ--VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLL 58
+AFA + + LLSKIA+G+GHGE+S YFDGWKA+E +P+HP P+GVIQMGLAEN L
Sbjct: 2 VAFATEKKQDLNLLSKIASGDGHGENSSYFDGWKAYEENPFHPIDRPDGVIQMGLAENQL 61
Query: 59 CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118
C +L+ W++ +P+ASIC++EG+N+F IAIFQDYHGLPEFR AVAKFM K R N++ FD
Sbjct: 62 CGDLMRKWVLKHPEASICTSEGVNQFSDIAIFQDYHGLPEFRQAVAKFMEKTRNNKVKFD 121
Query: 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSND 178
PDRIVMSGGATGAHETVAFCLA+PGD FLVPTPYYPGFDRDLRWRTGV LVPV C SSN
Sbjct: 122 PDRIVMSGGATGAHETVAFCLANPGDGFLVPTPYYPGFDRDLRWRTGVNLVPVTCHSSNG 181
Query: 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCD 238
FK+T+EALEAAYE A++SNI +KG+L+TNPSNPLGT LDRE LK +V+F N+K IHL+ D
Sbjct: 182 FKITVEALEAAYENARKSNIPVKGLLVTNPSNPLGTTLDRECLKSLVNFTNDKGIHLIAD 241
Query: 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
EIYAAT F +S F+S+AE+I++ CNR+LIHIVYSLSKDMG PG RVGI+YSYND+VV
Sbjct: 242 EIYAATTFG-QSEFISVAEVIEEIEDCNRDLIHIVYSLSKDMGLPGLRVGIVYSYNDRVV 300
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358
ARKMSSFGLVSSQTQHLIA MLSD++FV++FI ES R+A RH T GL +GIG L
Sbjct: 301 QIARKMSSFGLVSSQTQHLIAKMLSDEEFVDEFIRESKLRLAARHAEITTGLDGLGIGWL 360
Query: 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418
K+ AGLFLWMDL +LLK T+++E LWRVI+++VKLNVSPG SFHC PGWFRVCFANM
Sbjct: 361 KAKAGLFLWMDLRNLLKTATFDSETELWRVIVHQVKLNVSPGGSFHCHEPGWFRVCFANM 420
Query: 419 DDRTMEIALSRITSFMLKNVEAKVP--------NKKKLCWQXXXXXXXXXXXX-DDFMAS 469
D +TME AL RI F + E P KKK CWQ DD S
Sbjct: 421 DHKTMETALERIRVFTSQLEEETKPMAATTMMAKKKKKCWQSNLRLSFSDTRRFDDGFFS 480
Query: 470 PCMS-PQSPLVQART 483
P P SPLV+A+T
Sbjct: 481 PHSPVPPSPLVRAQT 495
|
|
| TAIR|locus:2082817 ACS1 "ACC synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
Identities = 304/484 (62%), Positives = 381/484 (78%)
Query: 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMN 69
QLLSK+A + HGE SPYF GWKA++++P+HPT NP GVIQMGLAEN LC +L+++W+
Sbjct: 9 QLLSKLALSDKHGEASPYFHGWKAYDNNPFHPTHNPQGVIQMGLAENQLCSDLIKEWIKE 68
Query: 70 NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT 129
NP+ASIC+AEG++ F IA+FQDYHGL +FR A+A FM + RG R+ F+ +R+VMSGGAT
Sbjct: 69 NPQASICTAEGIDSFSDIAVFQDYHGLKQFRQAIATFMERARGGRVRFEAERVVMSGGAT 128
Query: 130 GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
GA+ET+ FCLADPGDAFLVPTPYY FDRDLRWRTGV+++PV C SSN+F++T +ALE+A
Sbjct: 129 GANETIMFCLADPGDAFLVPTPYYAAFDRDLRWRTGVRIIPVECSSSNNFQITKQALESA 188
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249
Y KAQE+ I+IKG++I SNPLGT LDRETL+ +VSFIN+K IHLVCDEIYAATVF E
Sbjct: 189 YLKAQETGIKIKGLII---SNPLGTSLDRETLESLVSFINDKQIHLVCDEIYAATVFA-E 244
Query: 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL 309
F+S+AEII + NR+LIHIVYSLSKDMG PGFRVG++YSYND VVSCAR+MSSFGL
Sbjct: 245 PGFISVAEIIQEMYYVNRDLIHIVYSLSKDMGLPGFRVGVVYSYNDVVVSCARRMSSFGL 304
Query: 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMD 369
VSSQTQ +A MLSD FV+ F+ E +KR+A+RH FT GL ++GI CL+SNAGLF+ MD
Sbjct: 305 VSSQTQSFLAAMLSDQSFVDNFLVEVSKRVAKRHHMFTEGLEEMGISCLRSNAGLFVLMD 364
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L H+LK+QT+++EMALWRVIIN+VK+NVSPGSSFHC PGWFRVCFANMD+ T++IAL R
Sbjct: 365 LRHMLKDQTFDSEMALWRVIINKVKINVSPGSSFHCSEPGWFRVCFANMDEDTLQIALER 424
Query: 430 ITSFML-------KNVEA----KVPNKKKLCWQXXXXXXXXXXXXDDFMASP-CMSPQSP 477
I F++ KN K NKK+ +Q ++ + SP MSP SP
Sbjct: 425 IKDFVVGDRANKNKNCNCICNNKRENKKRKSFQKNLKLSLSSMRYEEHVRSPKLMSPHSP 484
Query: 478 LVQA 481
L++A
Sbjct: 485 LLRA 488
|
|
| TAIR|locus:2025361 ACS2 "1-amino-cyclopropane-1-carboxylate synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1601 (568.6 bits), Expect = 1.6e-164, P = 1.6e-164
Identities = 300/491 (61%), Positives = 383/491 (78%)
Query: 7 NQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDW 66
N+ +LSKIA N HGE+S YFDGWKA++ DP+H ++NP+G+IQMGLAEN LC +L++DW
Sbjct: 7 NKGAVLSKIATNNQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDW 66
Query: 67 LMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126
+ NP+ASIC+ EG+++F IA FQDYHGL +FR A+A FMGK RG R+TFDP+R+VMSG
Sbjct: 67 VKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGRVTFDPERVVMSG 126
Query: 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEAL 186
GATGA+ET+ FCLADPGD FL+P+PYY FDRDLRWRTGV+++PV C SS++FK+T++A
Sbjct: 127 GATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAA 186
Query: 187 EAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246
E AY+KAQESN ++KG+++TNPSNPLGT LD++TL ++V F+ KNIHLV DEIYAATVF
Sbjct: 187 EWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVF 246
Query: 247 TKESSFVSIAEII-DQDIA-CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM 304
FVS+AE++ D DI+ N +LIHIVYSLSKDMG PGFRVGI+YS+ND VVSCARKM
Sbjct: 247 AG-GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKM 305
Query: 305 SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364
SSFGLVSSQTQ ++A+MLSDDQFV+ F+ ES++R+ RHK FT G+ + I CL SNAGL
Sbjct: 306 SSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGL 365
Query: 365 FLWMDLHHLLKEQ-TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423
F WMDL HLL+++ ++E+E+ LW +II+ VKLNVSPGSSF C PGWFR+CFANMDD T+
Sbjct: 366 FAWMDLRHLLRDRNSFESEIELWHIIIDRVKLNVSPGSSFRCTEPGWFRICFANMDDDTL 425
Query: 424 EIALSRITSFMLKN----VEAK------VPNK--KKLCWQXXXXXXXXXXXXDDFMASP- 470
+AL RI F+ KN VE + NK KKL W +D ++SP
Sbjct: 426 HVALGRIQDFVSKNKNKIVEKASENDQVIQNKSAKKLKWTQTNLRLSFRRLYEDGLSSPG 485
Query: 471 CMSPQSPLVQA 481
MSP SPL++A
Sbjct: 486 IMSPHSPLLRA 496
|
|
| UNIPROTKB|Q9SXN8 pPPACS1 "1-aminocyclopropane-1-carboxylic acid synthase" [Pyrus pyrifolia (taxid:3767)] | Back alignment and assigned GO terms |
|---|
Score = 1355 (482.0 bits), Expect = 1.9e-138, P = 1.9e-138
Identities = 239/431 (55%), Positives = 326/431 (75%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
+++LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++TFDP+ +V++ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET FCLADPG+AFL+PTPYYPGFDRDL+WRTGV++VP+ C +SN F++T ALE
Sbjct: 121 TSANETFIFCLADPGEAFLIPTPYYPGFDRDLKWRTGVEIVPIHCTNSNGFQITETALEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY++A++ N+R+KGVL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 AYQEAEKCNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 249 ESSFVSIAEIIDQDIACNRNL-----IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303
S F+S+ E++ +D C+ N +H+VYSLSKD+G PGFRVG IYS +D VV+ A K
Sbjct: 241 PS-FISVMEVL-KDRNCDENFEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 298
Query: 304 MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363
MSSFGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAG
Sbjct: 299 MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAG 358
Query: 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423
LF W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT+
Sbjct: 359 LFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTL 418
Query: 424 EIALSRITSFM 434
++A+ R+ +F+
Sbjct: 419 DLAMQRLKAFV 429
|
|
| UNIPROTKB|P37821 ACS-1 "1-aminocyclopropane-1-carboxylate synthase" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 239/431 (55%), Positives = 325/431 (75%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
+++LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++TFDP+ +V++ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET FCLADPG+A L+PTPYYPGFDRDL+WRTGV++VP+ C SSN F++T ALE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY++A++ N+R+KGVL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 249 ESSFVSIAEIIDQDIACNRNL-----IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303
S F+S+ E++ +D C+ N +H+VYSLSKD+G PGFRVG IYS +D VV+ A K
Sbjct: 241 PS-FISVMEVL-KDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 298
Query: 304 MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363
MSSFGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAG
Sbjct: 299 MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAG 358
Query: 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423
LF W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT+
Sbjct: 359 LFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTL 418
Query: 424 EIALSRITSFM 434
++A+ R+ +F+
Sbjct: 419 DLAMQRLKAFV 429
|
|
| TAIR|locus:2097350 ACS9 "1-aminocyclopropane-1-carboxylate synthase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 243/437 (55%), Positives = 327/437 (74%)
Query: 12 LSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNP 71
LS+ N HG+DS YF GW+ +E +PY KNPNG+IQMGLAEN LC +L+E WL NP
Sbjct: 4 LSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQLCFDLIETWLAKNP 63
Query: 72 KASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGA 131
A+ +G + FK +A+FQDYHGLPEF+ A+A+FM ++RGNR+TFDP +IV++ G+T A
Sbjct: 64 DAAGLKKDGQSIFKELALFQDYHGLPEFKKALAEFMEEIRGNRVTFDPSKIVLAAGSTSA 123
Query: 132 HETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191
+ET+ FCLA+PGDAFL+PTPYYPGFDRDL+WRTG ++VP+ C SSN F++T AL+ AY+
Sbjct: 124 NETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFQITESALQQAYQ 183
Query: 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251
+AQ+ ++++KGVL+TNPSNPLGT L R L +V FI KNIHL+ DEIY+ TVF E
Sbjct: 184 QAQKLDLKVKGVLVTNPSNPLGTMLTRRELNLLVDFITSKNIHLISDEIYSGTVFGFEQ- 242
Query: 252 FVSIAEII-DQDIACNR--NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG 308
FVS+ +++ D+++ + +HIVYSLSKD+G PGFRVG IYS ++ VVS A KMSSFG
Sbjct: 243 FVSVMDVLKDKNLENSEVSKRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFG 302
Query: 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWM 368
LVSSQTQ+L++ +LSD +F ++ E+ KR+ R K GL GI CLKSNAGLF W+
Sbjct: 303 LVSSQTQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWV 362
Query: 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALS 428
D+ HLL T+EAE+ LW+ I+ +VKLN+SPGSS HC PGWFRVCFANM + T+++A+
Sbjct: 363 DMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMK 422
Query: 429 RITSFMLKNVEAKVPNK 445
R+ ++ +V +K
Sbjct: 423 RLKEYVESTDSRRVISK 439
|
|
| TAIR|locus:2137579 ACS8 "1-amino-cyclopropane-1-carboxylate synthase 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 244/427 (57%), Positives = 323/427 (75%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
LLSK A+ N HG+DS YF GW+ +E +PY KNP+G+IQMGLAEN L +L+E WL N
Sbjct: 3 LLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQLSFDLIESWLAKN 62
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
P A+ EG + F+ +A+FQDYHGLP F+NA+A FM + RGNR++F+P+++V++ GAT
Sbjct: 63 PDAANFQREGQSIFRELALFQDYHGLPSFKNAMADFMSENRGNRVSFNPNKLVLTAGATP 122
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A+ET+ FCLADPGDAFL+PTPYYPGFDRDL+WRTG ++VP+ C S+N F++T ALE AY
Sbjct: 123 ANETLMFCLADPGDAFLLPTPYYPGFDRDLKWRTGAEIVPIQCKSANGFRITKVALEEAY 182
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
E+AQ+ N+++KGVLITNPSNPLGT R L ++ FI+ K IHL+ DEIY+ TVFT
Sbjct: 183 EQAQKLNLKVKGVLITNPSNPLGTTTTRTELNHLLDFISRKKIHLISDEIYSGTVFTNPG 242
Query: 251 SFVSIAEIIDQDIACNRNL---IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF 307
F+S+ E++ N ++ +HIVYSLSKD+G PGFRVG+IYS +D VVS A KMSSF
Sbjct: 243 -FISVMEVLKDRKLENTDVFDRVHIVYSLSKDLGLPGFRVGVIYSNDDFVVSAATKMSSF 301
Query: 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW 367
GL+SSQTQ+L++ +LSD F + ++ E+ R+ RHK GL GI CLKSNAGLF W
Sbjct: 302 GLISSQTQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFCW 361
Query: 368 MDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427
+D+ HLLK T+EAE+ LW+ I+ EVKLN+SPGSS HC PGWFRVCFAN+ + T+++AL
Sbjct: 362 VDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVAL 421
Query: 428 SRITSFM 434
R+ F+
Sbjct: 422 DRLKRFV 428
|
|
| UNIPROTKB|O80334 O80334 "1-aminocyclopropane-1-carboxylate synthase" [Actinidia deliciosa (taxid:3627)] | Back alignment and assigned GO terms |
|---|
Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
Identities = 242/428 (56%), Positives = 326/428 (76%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
++LLS+ AA N HG+DS YF GW+ +E PY +NP G+IQMGLAEN L +L+E WL
Sbjct: 1 MKLLSRKAACNSHGQDSSYFLGWQEYEKKPYDEVRNPTGIIQMGLAENQLSFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NNP+ + +G + F+ +A+FQDYHGLP F+NA+ FM ++RGN+++FDP ++V++ GA
Sbjct: 61 NNPEPAGFMRDGQSIFRELALFQDYHGLPAFKNAMVDFMSEIRGNKVSFDPKKLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET+ FCLA+PG+AFL+PTPYYPGFDRDL+WRTGV++VP+ C S+N F++T ALE
Sbjct: 121 TSANETLMFCLAEPGEAFLLPTPYYPGFDRDLQWRTGVEIVPIHCTSANSFQITDSALEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY+ AQ+ N+R+KGVL+TNPSNPLGT L R L +++FI KNIHL+ DEIY+ TVF+
Sbjct: 181 AYQSAQKRNLRVKGVLVTNPSNPLGTTLTRPELNLLLTFITSKNIHLISDEIYSGTVFSS 240
Query: 249 ESSFVSIAEIIDQDIACNR--NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS 306
FVSI E++ N +HIVYSLSKD+G PGFRVG IYS +D VV+ A KMSS
Sbjct: 241 PD-FVSIMEVLKDSSHSTEVWNRVHIVYSLSKDLGLPGFRVGAIYSNDDVVVAAATKMSS 299
Query: 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFL 366
FGLVSSQTQ+L+A+MLSD F + +I+E+ KR+ +R + GL GIGCLKSNAGLF
Sbjct: 300 FGLVSSQTQYLLASMLSDKNFTKHYISENQKRLKKRQEMLISGLQSAGIGCLKSNAGLFC 359
Query: 367 WMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIA 426
W+D+ HLL +++++EM LW+ I+ +V LN+SPGSS HC PGWFRVCFANM + T++IA
Sbjct: 360 WVDMRHLLSSKSFDSEMELWKKIVYQVGLNISPGSSCHCSEPGWFRVCFANMSEDTLDIA 419
Query: 427 LSRITSFM 434
+ RI +F+
Sbjct: 420 IQRIKTFV 427
|
|
| UNIPROTKB|A1IIT7 PbACS1B "1-aminocyclopropane-1-carboxylate synthase" [Pyrus x bretschneideri (taxid:225117)] | Back alignment and assigned GO terms |
|---|
Score = 1341 (477.1 bits), Expect = 5.8e-137, P = 5.8e-137
Identities = 238/431 (55%), Positives = 323/431 (74%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
+++LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++TFDP+ +V++ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET FCLADPG+A L+PTPYYPGFDRDL+WRTGV +VP+ C SSN F++T ALE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVDIVPIHCTSSNGFQITETALEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY++A++ N+R+K VL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 AYQEAEKRNLRVKSVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 249 ESSFVSIAEIIDQDIACNRNL-----IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303
S F+S+ E++ +D C+ N +H+VYSLSKD+G PGFRVG IYS +D VV+ A K
Sbjct: 241 PS-FISVMEVL-KDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 298
Query: 304 MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363
MSSFGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAG
Sbjct: 299 MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAG 358
Query: 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423
LF W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT+
Sbjct: 359 LFCWVDMRHLLRSSTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTL 418
Query: 424 EIALSRITSFM 434
++A+ R+ +F+
Sbjct: 419 DLAMQRLKAFV 429
|
|
| UNIPROTKB|Q6TRG0 ACS1b "1-aminocyclopropane-1-carboxylate synthase 1b" [Pyrus communis (taxid:23211)] | Back alignment and assigned GO terms |
|---|
Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
Identities = 237/431 (54%), Positives = 323/431 (74%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
+ +LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL
Sbjct: 1 MHMLSRNATFNPHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++T DP+ +V++ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTLDPNHLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET FCLADPG+A L+PTPYYPGFDRDL+WRTGV++VP+ C SSN F++T LE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETTLEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY++A++ N+R+KGVL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS 240
Query: 249 ESSFVSIAEIIDQDIACNRNL-----IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303
S F+S+ E++ +D C++N +H+VYSLSKD+G PGFRVG IYS +D VV+ A K
Sbjct: 241 PS-FISVMEVL-KDRNCDKNSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK 298
Query: 304 MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363
MSSFGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAG
Sbjct: 299 MSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKNLVSGLQKAGISCLNGNAG 358
Query: 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423
LF W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT+
Sbjct: 359 LFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTL 418
Query: 424 EIALSRITSFM 434
++A+ R+ +F+
Sbjct: 419 DLAMQRLKAFV 429
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q00379 | 1A12_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.6563 | 0.9751 | 0.9534 | N/A | no |
| Q9MB95 | 1A11_PRUMU | 4, ., 4, ., 1, ., 1, 4 | 0.6521 | 0.9751 | 0.9573 | N/A | no |
| Q00257 | 1A12_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.5334 | 0.9109 | 0.9263 | N/A | no |
| Q9SAR0 | 1A16_ARATH | 4, ., 4, ., 1, ., 1, 4 | 0.6646 | 0.9979 | 0.9737 | yes | no |
| P23599 | 1A11_CUCMA | 4, ., 4, ., 1, ., 1, 4 | 0.6556 | 0.9730 | 0.9533 | N/A | no |
| P37821 | 1A1C_MALDO | 4, ., 4, ., 1, ., 1, 4 | 0.5545 | 0.8778 | 0.8964 | N/A | no |
| Q01912 | 1A1C_VIGRR | 4, ., 4, ., 1, ., 1, 4 | 0.7560 | 0.7577 | 0.9945 | N/A | no |
| A2XLL2 | 1A11_ORYSI | 4, ., 4, ., 1, ., 1, 4 | 0.5591 | 0.8799 | 0.8726 | N/A | no |
| P18485 | 1A12_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6617 | 0.9585 | 0.9546 | N/A | no |
| P27486 | 1A1C_DIACA | 4, ., 4, ., 1, ., 1, 4 | 0.6035 | 0.9710 | 0.9071 | N/A | no |
| P31531 | 1A1C_SOYBN | 4, ., 4, ., 1, ., 1, 4 | 0.7190 | 0.9917 | 0.9896 | yes | no |
| P23279 | 1A11_CUCPE | 4, ., 4, ., 1, ., 1, 4 | 0.6597 | 0.9730 | 0.9533 | N/A | no |
| P29535 | 1A14_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.6839 | 0.8757 | 0.8886 | N/A | no |
| Q42881 | 1A13_SOLLC | 4, ., 4, ., 1, ., 1, 4 | 0.5512 | 0.8923 | 0.9189 | N/A | no |
| Q07262 | 1A1C_TOBAC | 4, ., 4, ., 1, ., 1, 4 | 0.6504 | 0.9979 | 0.9816 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 483 | |||
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 0.0 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-117 | |
| PLN02994 | 153 | PLN02994, PLN02994, 1-aminocyclopropane-1-carboxyl | 2e-76 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 8e-63 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-54 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 4e-37 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 2e-30 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-29 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 6e-27 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 6e-27 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 6e-27 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 2e-26 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 5e-24 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 3e-23 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 6e-22 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 8e-22 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 1e-21 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 2e-21 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 6e-21 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 2e-20 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 2e-20 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 7e-20 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-19 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-17 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 2e-17 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 3e-17 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 3e-17 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 1e-16 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 2e-16 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 2e-16 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 2e-16 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 8e-16 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 2e-15 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 2e-15 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 6e-15 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 7e-15 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 8e-15 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 8e-15 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 1e-14 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 1e-14 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 3e-14 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 5e-14 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 2e-13 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 4e-13 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 5e-13 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 3e-12 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 4e-12 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 8e-12 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 8e-12 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 1e-11 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 3e-11 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 9e-11 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 1e-10 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 2e-10 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 2e-10 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 6e-10 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-09 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 3e-09 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 8e-09 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 2e-08 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 3e-08 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 9e-08 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 1e-07 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 2e-07 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 3e-07 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 3e-07 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 4e-07 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 2e-06 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-06 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 4e-06 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 7e-06 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 7e-06 | |
| COG3977 | 417 | COG3977, COG3977, Alanine-alpha-ketoisovalerate (o | 2e-05 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 3e-05 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 4e-05 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 7e-05 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 2e-04 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-04 | |
| pfam01212 | 288 | pfam01212, Beta_elim_lyase, Beta-eliminating lyase | 3e-04 | |
| COG0626 | 396 | COG0626, MetC, Cystathionine beta-lyases/cystathio | 6e-04 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 8e-04 | |
| COG2008 | 342 | COG2008, GLY1, Threonine aldolase [Amino acid tran | 0.002 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 0.002 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 0.002 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 0.004 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 0.004 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 0.004 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 0.004 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 652 bits (1683), Expect = 0.0
Identities = 253/458 (55%), Positives = 335/458 (73%), Gaps = 13/458 (2%)
Query: 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMN 69
+LLS+ A N HG+DS YF GW+ +E +PY KNP+G+IQMGLAEN L +L+E WL
Sbjct: 2 KLLSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAK 61
Query: 70 NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT 129
NP A+ G + F+ +A+FQDYHGLP F+NA+A+FM ++RGN++TFDP+++V++ GAT
Sbjct: 62 NPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGAT 121
Query: 130 GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
A+ET+ FCLA+PGDAFL+PTPYYPGFDRDL+WRTGV++VP+ C SSN F++T ALE A
Sbjct: 122 SANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEA 181
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249
Y++AQ+ N+++KGVLITNPSNPLGT R L +V FI KNIHL+ DEIY+ TVF
Sbjct: 182 YQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFD-S 240
Query: 250 SSFVSIAEIIDQDIACNR----NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS 305
FVS+ E++ +D N +HIVYSLSKD+G PGFRVG IYS ++ VVS A KMS
Sbjct: 241 PGFVSVMEVL-KDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMS 299
Query: 306 SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365
SFGLVSSQTQ+L++ +LSD +F + ++ E+ KR+ +R K GL GI CLKSNAGLF
Sbjct: 300 SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLF 359
Query: 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEI 425
W+D+ HLLK T+EAEM LW+ I+ EVKLN+SPGSS HC PGWFRVCFANM + T+++
Sbjct: 360 CWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFANMSEETLDL 419
Query: 426 ALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSSRRM 463
A+ R+ SF VE+ + + L+ + RR
Sbjct: 420 AMKRLKSF----VESDSGRRINKSSHQRLK---NLRRK 450
|
Length = 468 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 647 bits (1669), Expect = 0.0
Identities = 303/498 (60%), Positives = 390/498 (78%), Gaps = 19/498 (3%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
M N+ +LSKIA + HGE+S YFDGWKA++ DP+H ++NP+G+IQMGLAEN LC
Sbjct: 1 MGLPAKNKGAILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCL 60
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L++DW+ NP+ASIC+ EG+++F IA FQDYHGL +FR A+A FMGK RG ++TFDP+
Sbjct: 61 DLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE 120
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
R+VMSGGATGA+ET+ FCLADPGD FL+P+PYY FDRDLRWRTGV+++PV C SS++FK
Sbjct: 121 RVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFK 180
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
+T++A + AY+KAQESN ++KG+++TNPSNPLGT LD++TL ++V F+ KNIHLV DEI
Sbjct: 181 LTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEI 240
Query: 241 YAATVFTKESSFVSIAEII-DQDIA-CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
YAATVF FVS+AE++ D DI+ N +LIHIVYSLSKDMG PGFRVGI+YS+ND VV
Sbjct: 241 YAATVFAG-GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVV 299
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358
SCARKMSSFGLVSSQTQ ++A+MLSDDQFV+ F+ ES++R+ RHK FT G+ + I CL
Sbjct: 300 SCARKMSSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACL 359
Query: 359 KSNAGLFLWMDLHHLLKEQ-TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN 417
SNAGLF WMDL HLL+++ ++E+E+ LW +II++VKLNVSPGSSF C PGWFR+CFAN
Sbjct: 360 TSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN 419
Query: 418 MDDRTMEIALSRITSFMLKN----VEAKVPNK--------KKLCW-QRSLRLSMSSRRMD 464
MDD T+ +AL RI F+ KN VE N KKL W Q +LRLS R +
Sbjct: 420 MDDDTLHVALGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSF-RRLYE 478
Query: 465 DFMASP-CMSPQSPLVQA 481
D ++SP MSP SPL++A
Sbjct: 479 DGLSSPGIMSPHSPLLRA 496
|
Length = 496 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 612 bits (1579), Expect = 0.0
Identities = 258/438 (58%), Positives = 331/438 (75%), Gaps = 8/438 (1%)
Query: 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCH 60
MA ++ LSK+A HGEDSPYF GWKA++ DPY + NP+GVIQMGLAEN +
Sbjct: 2 MAIEIAQPAVGLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSF 61
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120
+L+E++L +P+AS +G F+ A+FQDYHGL FR A+A FM ++RG + FDPD
Sbjct: 62 DLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD 121
Query: 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK 180
RIV++ GAT A+E + F LADPGDA LVPTPYYPGFDRDLRWRTGV++VP+ CDSSN+F+
Sbjct: 122 RIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQ 181
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
VT +ALEAAY++A+ +NIR++GVLITNPSNPLG + R L+DI+ F+ KNIHLV DEI
Sbjct: 182 VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEI 241
Query: 241 YAATVFTKESSFVSIAEII----DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ 296
Y+ +VF+ S FVS+AEI+ + +A +HIVYSLSKD+G PGFRVG IYSYND+
Sbjct: 242 YSGSVFSA-SEFVSVAEIVEARGYKGVA---ERVHIVYSLSKDLGLPGFRVGTIYSYNDK 297
Query: 297 VVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG 356
VV+ AR+MSSF LVSSQTQHL+A+MLSD++F E +I + +R+ +R++ GL + GI
Sbjct: 298 VVTTARRMSSFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIE 357
Query: 357 CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA 416
CLK NAGLF WM+L LL+ T E E+ALW I+ EVKLN+SPGSS HC PGWFRVCFA
Sbjct: 358 CLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFA 417
Query: 417 NMDDRTMEIALSRITSFM 434
NM + T+E+AL RI FM
Sbjct: 418 NMSEDTLEVALKRIHRFM 435
|
Length = 447 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 347 bits (893), Expect = e-117
Identities = 127/387 (32%), Positives = 175/387 (45%), Gaps = 34/387 (8%)
Query: 48 VIQMGLAENLLCHE--LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAK 105
++ L N + + A ++ GLPE R A+AK
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDA--------LAGGTRNLYGPTDGLPELREALAK 52
Query: 106 FMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWR 163
F+G R + D + +V GA E + F L +PGDA LVP P YP + R R
Sbjct: 53 FLG--RSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA 110
Query: 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKD 223
G ++V SSNDF + +ALEAA ++A E K VL T+P NP GT E L+
Sbjct: 111 -GGEVVRYPLYSSNDFHLDFDALEAALKEATE---GNKVVLHTSPHNPTGTVATLEELEK 166
Query: 224 IVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283
++ E NI L+ DE YA VF V+ ++ + + +V S SK G
Sbjct: 167 LLDLAKEHNILLLVDEAYAGFVF-GSLDAVATRALLAEGPN-----LLVVGSFSKAFGLA 220
Query: 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343
G+RVG I N V+S RK++ S+ Q A LSD V + E +RI ER
Sbjct: 221 GWRVGYILG-NAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERR 279
Query: 344 KAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403
GL G+ L S AG FL L EA +AL +V++ EV + V+PGSSF
Sbjct: 280 DYLRDGLEAAGLSVLPSQAGFFLLTGLDP-------EAALALAQVLLEEVGVYVTPGSSF 332
Query: 404 HCPNPGWFRVCFANMDDRTMEIALSRI 430
PGW R+ A + +E L I
Sbjct: 333 GG--PGWLRITVAGGTEEELEELLEAI 357
|
Length = 357 |
| >gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 2e-76
Identities = 89/147 (60%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMN 69
QLLSK+A + HGE SPYF GWKA++ +P+ NP G+IQMGLAEN LC +L+E+W+
Sbjct: 7 QLLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEE 66
Query: 70 NPKASICSAEG-LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP A IC+AEG ++ FK IA+FQDYHGL FR A+A FM + RG R+ FD D IV+S GA
Sbjct: 67 NPHADICTAEGTIDSFKDIALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGA 126
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPG 155
T A+E + FC+ADPGDAFLVPTPYY
Sbjct: 127 TAANEIIMFCIADPGDAFLVPTPYYAA 153
|
Length = 153 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 8e-63
Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 30/344 (8%)
Query: 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP 149
+ GLPE R A+A+++G+ G + P+ IV++ GA A + L +PGD LVP
Sbjct: 32 YYPDPGLPELREAIAEWLGRRGGVDV--PPEEIVVTNGAQEALSLLLRALLNPGDEVLVP 89
Query: 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
P YPG++ R G ++VPV D F + +E LEAA + K + + NP+
Sbjct: 90 DPTYPGYEAAAR-LAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPN 142
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269
NP G L E L+++ + I ++ DE YA + ++D +
Sbjct: 143 NPTGAVLSEEELEELAELAKKHGILIISDEAYAE--LVYDGEPPPALALLDAY----ERV 196
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVS--CARKMSSFGLVSSQTQHLIATMLSDDQF 327
I ++ S SK G PG R+G + + ++++ + S+ +Q A L D
Sbjct: 197 I-VLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDG-- 253
Query: 328 VEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
E+ + E +R R A L ++G + +K + G FLW+DL E+ E +
Sbjct: 254 -EEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEA 312
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
V+ V PGS+F G+ R+ FA + +E AL R+
Sbjct: 313 GVV-------VRPGSAFGEGGEGFVRLSFAT-PEEELEEALERL 348
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-54
Identities = 96/353 (27%), Positives = 159/353 (45%), Gaps = 32/353 (9%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPT 150
G+PE R A+A+ R + DP+ I+++ GA A L +PGD L+P
Sbjct: 63 PSAGIPELREAIAEKYK--RRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
P YP ++ ++ G + VPV D N FK +E LEAA + K +++ +P+
Sbjct: 121 PGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPN 173
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269
NP G +E LK IV E +I ++ DEIY V+ + SI E+
Sbjct: 174 NPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYD-GAEHPSILELAGARD----RT 228
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK---MSSFGLVSSQTQHLIATMLSDDQ 326
I + S SK G G+R+G + +++++ RK + + Q+ L+ Q
Sbjct: 229 I-TINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSC-APTPAQYAAIAALNGPQ 286
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMA 384
E + E + ER L+++ G+ +K +L+ + LL + E A
Sbjct: 287 SDE-VVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSE----EFA 341
Query: 385 LWRVIINEVKLNVSPGSSFHCPN-PGWFRVCFANMDDRTMEIALSRITSFMLK 436
++ E + V PGS F P G+ R+ A + T+E AL R+ F+ +
Sbjct: 342 KK--LLEEAGVAVVPGSGFGEPPGEGYVRLSLAT-SEETLEEALRRLARFLAE 391
|
Length = 393 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 31/346 (8%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+PE R A+A + R N + +DP +++++ GA A L DPGD ++P PY+
Sbjct: 69 GIPELREAIAAKLK--RDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWV 126
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ ++ GV V V N FK+T+E LEAA + K +++ +PSNP G
Sbjct: 127 SYPEMVKLAGGV-PVFVPTGEENGFKLTVEQLEAAITP------KTKALILNSPSNPTGA 179
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
E L+ I E +I ++ DEIY V+ + F SIA + ++ I V
Sbjct: 180 VYSPEELEAIADVAVEHDIWVLSDEIYEKLVY-DGAEFTSIASLSP-ELR--DRTI-TVN 234
Query: 275 SLSKDMGFPGFRVGIIYSY---NDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVE 329
SK G+R+G Y +++ K+ S +S Q+ L+ Q
Sbjct: 235 GFSKAYAMTGWRLG----YAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQ--- 287
Query: 330 KFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
+ E + ER GL+++ G+ C K +++ ++ LL ++ +
Sbjct: 288 DEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLL-GKSITDSLEFAEA 346
Query: 389 IINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
++ E + V PG +F PG+ R+ +A + E L RI F+
Sbjct: 347 LLEEAGVAVVPGIAF--GAPGYVRLSYATSLEDLEE-GLERIERFL 389
|
Length = 393 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-30
Identities = 82/347 (23%), Positives = 146/347 (42%), Gaps = 41/347 (11%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLPE R A+A ++ RG +P++IV++ GA A + + L DPGD LV P YP
Sbjct: 133 GLPELREAIAAYLLARRGISC--EPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYP 190
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS--NPL 212
G + L G +++PV D + EALE A + K V P+ NP
Sbjct: 191 GALQALE-ALGARVIPVPVDEDG---IDPEALEEALA-----QWKPKAV-YVTPTFQNPT 240
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G + E K +++ + ++ ++ D+ Y + A D +I++
Sbjct: 241 GVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKAL--DA----PGRVIYL 294
Query: 273 VYSLSKDMGFPGFRVGII---YSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVE 329
S SK + PG R+G + ++++ ++ + G SS +Q +A L + +
Sbjct: 295 G-SFSKTL-APGLRLGYVVAPPELIEKLLR-LKQAADLG-PSSLSQAALAAFLLSGHY-D 349
Query: 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALW 386
+ + + A R A L++ GLFLW++L + + AL
Sbjct: 350 RHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARE-LLAAAL- 407
Query: 387 RVIINEVKLNVSPGSSFHCPNPGW---FRVCFANMDDRTMEIALSRI 430
E + V+P S + R+ F++ + +E + R+
Sbjct: 408 -----EKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRL 449
|
Length = 459 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-29
Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 61/360 (16%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
GL E R A A F+ + + + P + I+++ GAT A + +PGD L+P P Y
Sbjct: 68 GLLELRQAAADFVKEKYN--LDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAY 125
Query: 154 PGFDRDLRWRTGVQLV---PVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
PG++ V LV V D++ NDF +T E LE A Q + K V++ P+
Sbjct: 126 PGYE------PIVNLVGAEIVEIDTTENDFVLTPEMLEKAI-LEQGDKL--KAVILNYPA 176
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII-DQDIACNRN 268
NP G RE +K + + + +I ++ DE+Y+ +T E VSIAE + DQ I N
Sbjct: 177 NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH-VSIAEYLPDQTILIN-- 233
Query: 269 LIHIVYSLSKDMGFPGFRVGIIY---SYNDQV-------VSCARKMSSFGLVSSQTQHLI 318
LSK G+R+G+I+ + Q+ V+ A M+ F V + T
Sbjct: 234 ------GLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNG-- 285
Query: 319 ATMLSDDQFVEKFIAESAKR---IAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK 375
DD K E KR I E+ ++ +G +K + +++ +
Sbjct: 286 ----KDDALPMK--KEYIKRRDYIIEK-------MTDLGFKIIKPDGAFYIFAK----IP 328
Query: 376 EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA-NMDDRTMEIALSRITSFM 434
+ + + + PG++F G+ R+ +A +M+ T++ A+ R+ +M
Sbjct: 329 AGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAASME--TIKEAMKRLKEYM 386
|
Length = 391 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-27
Identities = 81/290 (27%), Positives = 130/290 (44%), Gaps = 32/290 (11%)
Query: 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGDA 145
+ D G P R AVA F+ + R DP I ++ GA+ + L DP D
Sbjct: 111 YTDSAGYPFVRKAVAAFIER-RDGVPK-DPSDIFLTDGAS---SGIKLLLQLLIGDPSDG 165
Query: 146 FLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205
++P P YP + + G Q VP D + + E LE AYE+A + I + +++
Sbjct: 166 VMIPIPQYPLYSAAITLLGGKQ-VPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVV 224
Query: 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC 265
NP NP G L R+ +++I+ F EK I L+ DE+Y ++ E F+S +++ + A
Sbjct: 225 INPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAE 284
Query: 266 NRNLIHIV--YSLSKDM-GFPGFRVGI--IYSYNDQVVSCARKMSSFGLVSSQT--QHLI 318
+ +V +S SK + G G R G + + +V K++S L S Q +
Sbjct: 285 YNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINL-CSNVVGQLMT 343
Query: 319 ATMLS----DDQFVEKF------IAESAKRIAERHKAFTWGLSQV-GIGC 357
M + D + I S KR AE T L+++ G+ C
Sbjct: 344 GLMCNPPREGDASYPLYKRERDAIFTSLKRRAE---LLTDELNKIEGVSC 390
|
Length = 481 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 6e-27
Identities = 94/353 (26%), Positives = 149/353 (42%), Gaps = 64/353 (18%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G PE R A+A+ + + G D IVM+ GA GA + +PGD +V PY+
Sbjct: 74 GYPEVREAIAESLNRRFG--TPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFV 131
Query: 155 --GFDRDLRWRTGVQLVPVVCDS-SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
F + VV + ++ F+ ++ALEAA + K V+I +P+NP
Sbjct: 132 EYRF-----YVDNHGGKLVVVPTDTDTFQPDLDALEAAI------TPKTKAVIINSPNNP 180
Query: 212 LGTFLDRETLKDIVSFINEKN------IHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC 265
G ETLK + + + EK+ I+L+ DE Y V+ + I + D
Sbjct: 181 TGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY-DGAEVPYIFKYYD----- 234
Query: 266 NRNLIHIVYSLSKDMGFPGFRVGIIY-----SYNDQVVS----CARKMSSFGLV--SSQT 314
N I +VYS SK + PG R+G I D +V+ R + G V +
Sbjct: 235 --NSI-VVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRIL---GFVNAPALM 288
Query: 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
Q ++A L V + GL+++G C+K +L+
Sbjct: 289 QRVVAKCLDATVDVSIY--------KRNRDLLYDGLTELGFECVKPQGAFYLF--PKSPE 338
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427
++ E A + L + PGS F C PG+FR+ + +D T+E +L
Sbjct: 339 EDDVAFCEKAK------KHNLLLVPGSGFGC--PGYFRLSYC-VDTETIERSL 382
|
Length = 394 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 92/361 (25%), Positives = 164/361 (45%), Gaps = 62/361 (17%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
GL E R A F+ + + P+ I+++ GA+ A + + +PG ++P P Y
Sbjct: 66 GLLELRKAACNFVKDKYD--LHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIY 123
Query: 154 PGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
PG++ +R PV D S F++T EALE A + + + V++ PSNP
Sbjct: 124 PGYEPIIRLCGAK---PVFIDTRSTGFRLTAEALENAITE------KTRCVVLPYPSNPT 174
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA---EIIDQDIACNRNL 269
G L +E L+DI + +KNI ++ DEIY+ V+ + SIA E+ ++ I N
Sbjct: 175 GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPH--TSIAHFPEMREKTIVIN--- 229
Query: 270 IHIVYSLSKDMGFPGFRVGIIYS-------------YNDQVVSCARKMSSFGLVSSQTQH 316
LSK G+R+G +++ YN V+CA +S + + + T
Sbjct: 230 -----GLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYN---VTCASSISQYAALEALTAG 281
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
DD + + + KR + L +G+ K +L+ + H
Sbjct: 282 K------DDAKMMR--HQYKKRRDYVYNR----LISMGLDVEKPTGAFYLFPSIGH-FTM 328
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA-NMDDRTMEIALSRITSFML 435
+++ + L + E L V PGS+F G+ R+ +A +++ T++ L R+ +F+
Sbjct: 329 SSFDFALDL----VEEAGLAVVPGSAFSEYGEGYVRLSYAYSIE--TLKEGLDRLEAFLQ 382
Query: 436 K 436
+
Sbjct: 383 Q 383
|
Length = 387 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLP R A+A F + + DP+RI+++ G +GA + L DPG +L+ P YP
Sbjct: 70 GLPALREAIAGFYAQ--RYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYP 127
Query: 155 GFDRDLRWRTGV-QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
LR G QLVPV + +++T +E + N G L+ +P+NP G
Sbjct: 128 CNRHFLRLVEGAAQLVPV--GPDSRYQLTPALVERHW------NADTVGALVASPANPTG 179
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
T L R+ L + + + HLV DEIY + +++ S+ E+ D ++
Sbjct: 180 TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDD--------AFVL 229
Query: 274 YSLSKDMGFPGFRVG 288
S SK G G+R+G
Sbjct: 230 NSFSKYFGMTGWRLG 244
|
Length = 387 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-24
Identities = 101/407 (24%), Positives = 183/407 (44%), Gaps = 68/407 (16%)
Query: 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKF 106
GVI +G+ E + V W N +ASI S E +G + GL E R +AK+
Sbjct: 21 GVISLGVGEP----DFVTPW--NVREASIRSLE-----QGYTSYTANAGLLELRQEIAKY 69
Query: 107 MGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTG 165
+ K +++DP+ I+++ GA+ A + + +PGD L+ P + + + G
Sbjct: 70 LKKRFA--VSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGG 127
Query: 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIV 225
V VPV N+FKV +EAA + K +L+ +P+NP G L++ L++I
Sbjct: 128 VP-VPVATTLENEFKVQPAQIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIA 180
Query: 226 SFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284
+ + ++ ++ DEIYA + + +SF SI + ++ I ++ SK G
Sbjct: 181 VIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTI--------LISGFSKGFAMTG 232
Query: 285 FRVGI-------------IYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
+R+G I+ Y+ + CA M+ F + + L A DD V +
Sbjct: 233 WRLGFIAAPVYFSEAMLKIHQYS---MMCAPTMAQFAALEA----LRAGN--DD--VIR- 280
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHH--LLKEQTYEAEMALWRVI 389
+ +S ++ R F +++G+ C + + + L E+ E +++
Sbjct: 281 MRDSYRK---RRNFFVTSFNEIGLTCHVPGGAFYAFPSISSTGLSSEEFAE------QLL 331
Query: 390 INEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436
+ E K+ V PGS F G+ R +A ++ E A+ R+ F+
Sbjct: 332 LEE-KVAVVPGSVFGESGEGFIRCSYATSLEQLQE-AMKRMKRFVEN 376
|
Length = 378 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 33/219 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAF---CLADPGDAFLVPTP 151
G+PE R A AK+ K I +PD I+++ G E + F + DPGD LVP P
Sbjct: 67 GIPELREAFAKYYKK---WGIDVEPDEILIT---NGGSEAILFAMMAICDPGDEILVPEP 120
Query: 152 YYP---GFDRDLRWRTGVQLVPVVCDSSNDFKV-TMEALEAAYEKAQESNIRIKGVLITN 207
+Y GF GV++VPV F + + E +E + K +LI+N
Sbjct: 121 FYANYNGFATSA----GVKIVPVTTKIEEGFHLPSKEEIEKLI------TPKTKAILISN 170
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT--KESSFVSIAEIIDQDIAC 265
P NP G +E L+ + + ++ L+ DE+Y V+ K +S +S+ + D+ I
Sbjct: 171 PGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVI-- 228
Query: 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM 304
I+ S+SK G R+G + S N ++++ A K+
Sbjct: 229 ------IIDSVSKRYSACGARIGCLISKNKELIAAAMKL 261
|
Length = 397 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 6e-22
Identities = 89/360 (24%), Positives = 142/360 (39%), Gaps = 61/360 (16%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHETVAFCLADPGDAFLVP 149
Y G+ +R AVA + + G + DP+ V+S G G AH + +PGD LVP
Sbjct: 66 YEGMLAYRQAVADWYKRRFG--VELDPETEVLSLIGSKEGIAH--IPLAFVNPGDIVLVP 121
Query: 150 TPYYPGFDRDLRWRTGVQL-------VPVVCDSSNDFKVTMEAL-EAAYEKAQESNIRIK 201
P YP + R G +P+ + N F +A+ E +KA K
Sbjct: 122 DPGYPVY------RIGTLFAGGEPYEMPLKEE--NGFLPDFDAIPEDIAKKA-------K 166
Query: 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEII 259
+ I P+NP G + K++V F E NI + D Y+ F K SF+ +
Sbjct: 167 LMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAK 226
Query: 260 DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS------FGLVSSQ 313
D I +SLSK G+R+G+ N +++ K+ + F + Q
Sbjct: 227 DVGIE--------FHSLSKTYNMTGWRIGMA-VGNADLIAGLGKVKTNVDSGVFQAI--Q 275
Query: 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL 373
+ A D + E K R L ++GI K A ++W+ +
Sbjct: 276 YAAIAALNGPQD-----VVKEIRKIYQRRRDLLLEALKKIGIDVEKPKATFYVWVPVPEG 330
Query: 374 LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+ A + + E + V+PG F G+ R+ D+R E A++RI
Sbjct: 331 YTSAEFAARL------LEETGVVVTPGVGFGEYGEGYIRISLTVPDERLEE-AVARIKKL 383
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 8e-22
Identities = 83/360 (23%), Positives = 150/360 (41%), Gaps = 56/360 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G R AVA+++ ++T D +V++ G + A E LA+PG LVP P +P
Sbjct: 74 GALAAREAVAEYLSSDLPGKLT--ADDVVLTSGCSQAIEICIEALANPGANILVPRPGFP 131
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+D + +G+++ D+++ ++ LE+ ++ + +++ NPSNP G+
Sbjct: 132 LYDTRAAF-SGLEVRLYDLLPEKDWEIDLDGLESLADE------KTVAIVVINPSNPCGS 184
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV- 273
R+ L+ I + I ++ DEIY VF ++ F+ +A IV
Sbjct: 185 VFSRDHLQKIAEVAEKLGIPIIADEIYGHMVF-GDAPFIPMAS-----------FASIVP 232
Query: 274 ----YSLSKDMGFPGFRVGIIYSYN------DQVVSCARKMSSFGLVSSQTQHLIATMLS 323
+SK PG+R+G I ++ D V+ + + ++ L
Sbjct: 233 VLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQ---RILGPATIVQGALP 289
Query: 324 D-------DQFVEK--FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLH-HL 373
D + F K + +A+ E K G+ C K ++L + L L
Sbjct: 290 DILENTPQEFFDGKISVLKSNAELCYEELKDI------PGLVCPKPEGAMYLMVKLELEL 343
Query: 374 LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
E + ++ + E + PGS+F PN W R+ + + +E A SRI F
Sbjct: 344 FPE--IKDDVDFCEKLAREESVICLPGSAFGLPN--WVRITIT-VPESMLEEACSRIKEF 398
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 83/363 (22%), Positives = 150/363 (41%), Gaps = 63/363 (17%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+PE R A+A+++ ++ G + P+RI ++ A A L PGD + TP +P
Sbjct: 62 GIPELREALARYVSRLHG--VATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWP 119
Query: 155 GFDRDLRWRTGVQLVPVVCDSSND-FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ G ++V V D + + ++ L AA R + + I +P+NP G
Sbjct: 120 NLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRALFINSPNNPTG 172
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES---SFVSIAEIIDQDIACNRNLI 270
R+ L+ I++ + +V DE+Y + SF+ IAE D+ I
Sbjct: 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDR--------I 224
Query: 271 HIVYSLSKDMGFPGFRVG---------------IIYSYNDQVVSCARKMSSFGLVSSQTQ 315
V S SK+ G+R+G I Y+ SC + F Q
Sbjct: 225 IFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYN-----TSCV---AQF------VQ 270
Query: 316 HLIATMLSD-DQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHL 373
L + + FV + +A R+ L + G+ K + ++ +
Sbjct: 271 RAAVAALDEGEDFVAELVA----RLRRSRDHLVDALRALPGVEVAKPDGAMYAF------ 320
Query: 374 LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+ +AL + +++E L ++PG++F G+ R CFA D ++ A+ R+ F
Sbjct: 321 FRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRF 379
Query: 434 MLK 436
+ +
Sbjct: 380 LAR 382
|
Length = 382 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 37/353 (10%)
Query: 95 GLPEFRNAVAKFMGK----VRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT 150
G PE R AVA + + T D +V+ G + A L D GD LVP
Sbjct: 76 GSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPA 135
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P +P ++ + G+++ C D++ ++ + + R K +++TNPSN
Sbjct: 136 PGFPHYETVCKA-YGIEMRFYNCRPEKDWEADLDEIRRLVDD------RTKALIMTNPSN 188
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
P G+ R+ ++DI+ E + L+ DEIYA VF +F S+A D D R
Sbjct: 189 PCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGA-TFTSVA---DFDTTVPR--- 241
Query: 271 HIVYSLSKDMGFPGFRVG--IIYSYNDQVVSCARKMSSFGLV----SSQTQHLIATMLSD 324
I+ +K++ PG+R+G ++ + M G++ S Q + L
Sbjct: 242 VILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALL- 300
Query: 325 DQFVEKFIAESAKRIAERHKAFTWGLSQ-VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383
++ + + ++ E + + +G+ +FL L L K + ++++
Sbjct: 301 -NTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRL-DLEKFRDIKSDV 358
Query: 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEI---ALSRITSF 433
+ ++ E + V PG FH PG+ R+ + R +E+ A+ RI +F
Sbjct: 359 EFYEKLLEEENVQVLPGEIFHM--PGFTRLTIS----RPVEVLREAVERIKAF 405
|
Length = 412 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-21
Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 42/280 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
E R A+A++ G V DP+ +++ G+ E + +PGD L+P P +
Sbjct: 58 DYRELRAALAEYYGVV-------DPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFS 110
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
++ + G ++V V +F++ ++A+ AA + K V + NP+NP GT
Sbjct: 111 MYEIAAQ-LAGAEVVKVP---LKEFRLDLDAILAAIRD------KTKLVFLCNPNNPTGT 160
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
L RE L+ ++ + +V DE Y F+ ESS + NLI ++
Sbjct: 161 LLPREELRALLE-ALPEGGLVVIDEAYIE--FSPESSLELLKY--------PPNLI-VLR 208
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVEKF-- 331
+ SK G G RVG + N ++++ K+ F VSS L D ++E+
Sbjct: 209 TFSKAFGLAGLRVGYAIA-NPELIAALNKVRPPFN-VSSPALAAAIAALRDADYLEESVE 266
Query: 332 -IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
I E +R+ L +G+ + + F+ + +
Sbjct: 267 RIREERERLYA-------ALKALGLFGVFPSQANFVLVRV 299
|
Length = 356 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 80/345 (23%), Positives = 138/345 (40%), Gaps = 34/345 (9%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLPE R A A ++ G I P+++ ++ G A LA GD ++P P+Y
Sbjct: 68 GLPELREAYAAHYSRLYGAAI--SPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWY- 124
Query: 155 GFDRDLRWRT-GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
F+ + G++ V + CD A EA R + + + P+NP G
Sbjct: 125 -FNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTG 177
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEI---IDQDIACNRNLI 270
E L ++ I L+ DE Y F S + D + L+
Sbjct: 178 VVYPPELLHELYDLARRHGIALILDETYR--------DFDSGGGAPHDLFADPDWDDTLV 229
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQ-TQHLIATMLSD-DQFV 328
H+ YS SK G RVG + + ++ + M + + + + Q +A L + +
Sbjct: 230 HL-YSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWR 288
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
A + IA R AF +++ L ++ F + + H ++ E+A R
Sbjct: 289 ----AGNRAEIARRRDAFRAVFARLPGWELLASGAYFAY--VRHPFPDRP-SREVA--RR 339
Query: 389 IINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+ E + PG+ F G+ R+ FAN D + + R+ +F
Sbjct: 340 LAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384
|
Length = 386 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 10/173 (5%)
Query: 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----AD 141
G+ + D GLP R VA+F+ + G DP+ I ++ GA+ V L
Sbjct: 99 GLGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKG---VMQILNAVIRG 153
Query: 142 PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201
D LVP P YP + + G LVP + S ++ + + L + +A+ I ++
Sbjct: 154 EKDGVLVPVPQYPLYSATISLLGGT-LVPYYLEESENWGLDVNNLRQSVAQARSKGITVR 212
Query: 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254
++I NP NP G L L++I+ F ++ + L+ DE+Y ++ E F+S
Sbjct: 213 AMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFIS 265
|
Length = 407 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 7e-20
Identities = 85/340 (25%), Positives = 152/340 (44%), Gaps = 29/340 (8%)
Query: 118 DPDRIVMSGGAT-GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS 176
DP+ I ++ GA+ H + + D L P P YP + + G LVP D +
Sbjct: 190 DPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGT-LVPYYLDEA 248
Query: 177 NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLV 236
+ + + L+ E A+ I ++ +++ NP NP G L E +DIV F ++ + L+
Sbjct: 249 TGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308
Query: 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV--YSLSKDM-GFPGFRVGI--IY 291
DE+Y V+ + F S ++ + + I +V S+SK G G R G +
Sbjct: 309 ADEVYQENVYVPDKKFHSFKKVA-RSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT 367
Query: 292 SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD-----DQFVEKFIAES---AKRIAERH 343
+ V K++S L S+ + ++A+++ D+ E ++AE +A R
Sbjct: 368 GFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRA 427
Query: 344 KAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMA--------LWRVIINEVK 394
K L+ + G+ C K+ ++L+ +H L ++ +A A + ++N
Sbjct: 428 KTLEDALNSLEGVTCNKAEGAMYLFPRIH--LPQKAIKAAEAAKTAPDAFYCKRLLNATG 485
Query: 395 LNVSPGSSF-HCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+ V PGS F P FR +D+ I +SR+T F
Sbjct: 486 IVVVPGSGFGQVPGTWHFRCTILPQEDKIPAI-VSRLTEF 524
|
Length = 534 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 1e-19
Identities = 88/368 (23%), Positives = 147/368 (39%), Gaps = 60/368 (16%)
Query: 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP 149
+ GLPE R A+ K + R N + PD + ++ T A + + L DPGD L+P
Sbjct: 66 YGPSEGLPELREAIVK--REKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIP 123
Query: 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR------IKGV 203
P YP + +++ GV V +E + +IR K +
Sbjct: 124 GPSYPPYTGLVKFYGGV-------------PVEYRTIEEEGWQPDIDDIRKKITEKTKAI 170
Query: 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263
+ NP+NP G +++TLK+I+ E ++ ++ DEIY + E VS +
Sbjct: 171 AVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTY--EGKHVSPGSLTKDV- 227
Query: 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN-----DQVVSCARKMSSFGLV-SSQTQHL 317
+I ++ LSK G+R+G IY + +V K++ L ++ Q
Sbjct: 228 ----PVI-VMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFA 282
Query: 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFL--------WM 368
L+ ++ E K++ ER L+++ GI K ++ W
Sbjct: 283 AIAGLTGPM---DYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEEGPWK 339
Query: 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALS 428
D + E L V+ L V GS F G FR+ F + +E A+
Sbjct: 340 D----------DKEFVL-DVLHEAHVLFVH-GSGFGEYGAGHFRLVFLPPVE-ILEEAMD 386
Query: 429 RITSFMLK 436
R FM +
Sbjct: 387 RFEEFMRE 394
|
Length = 398 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 77/339 (22%), Positives = 148/339 (43%), Gaps = 28/339 (8%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+PE R A+A++ K G + D D ++++ GA A L + GD ++P P +
Sbjct: 71 GIPELREAIAEYYKKFYGVDV--DVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFV 128
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ D + + + + N+F+ + L K R + ++I P+NP G
Sbjct: 129 CYVEDAKI-AEAKPIRIPLREENEFQPDPDELLELITK------RTRMIVINYPNNPTGA 181
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
LD+E K I + NI+++ DE Y ++ + I D I N
Sbjct: 182 TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILAN-------- 233
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFI 332
S SK G+R+G + + +QV+ K+ ++ G V+S Q L + + +
Sbjct: 234 SFSKTFAMTGWRLGFVIA-PEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKA-V 291
Query: 333 AESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
E K ER K L ++ I + +++ ++ + E + A W ++
Sbjct: 292 EEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDET--GMSSE-DFAEW--LLE 346
Query: 392 EVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ ++ V PG++F G+ R+ +A ++ +E A+ R+
Sbjct: 347 KARVVVIPGTAFGKAGEGYIRISYATSKEKLIE-AMERM 384
|
Length = 391 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 89/370 (24%), Positives = 145/370 (39%), Gaps = 94/370 (25%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYY- 153
G PEF+ AVA V P+ I+ + GATGA+ V + L +PGD + P Y
Sbjct: 63 GSPEFKEAVASLYQNV-------KPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQ 115
Query: 154 -----P---GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205
P G + D W+ N + ++ L +R LI
Sbjct: 116 QLYDIPESLGAEVDY-WQL---------KEENGWLPDLDELRRL--------VRPNTKLI 157
Query: 206 T--NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263
N +NP G +DR L++IV + +++ DE+Y ++ S SIA++ ++ I
Sbjct: 158 CINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRP--LDEDGSTPSIADLYEKGI 215
Query: 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLS 323
+ N S+SK PG RVG I + N++V+ RK + ++ A +
Sbjct: 216 STN--------SMSKTYSLPGIRVGWIAA-NEEVIDILRKYRDYTMIC-------AGVF- 258
Query: 324 DDQFVEKFIAESAKRIAERHKAFT---------WGLSQVGIGCLKSNAG--LFLWMDLH- 371
DD E I ER++ W + + +K A F+ +D+
Sbjct: 259 DDMLA-SLALEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM 317
Query: 372 -------HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424
LLKE V L PG+ F G R+ + D T++
Sbjct: 318 PSEDFCLKLLKET--------------GVLL--VPGNRFD--LEGHVRIGYCC-DTETLK 358
Query: 425 IALSRITSFM 434
L +++ F+
Sbjct: 359 KGLKKLSEFL 368
|
Length = 373 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 3e-17
Identities = 98/406 (24%), Positives = 173/406 (42%), Gaps = 91/406 (22%)
Query: 61 ELVEDWLMNNPKASICSAEGLNEFKGI-----AIFQDYHGLPEFRNAVAKFMGKVRGNRI 115
E++ D + N P +A+G ++ KG+ AI Q Y+ +
Sbjct: 53 EILRDVIRNLP-----TAQGYSDSKGLFSARKAIMQ-YYQQKGIPD-------------- 92
Query: 116 TFDPDRIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWRTGVQLV--- 169
D D I + G + E + L + GD LVP P YP W V L
Sbjct: 93 -VDVDDIYIGNGVS---ELIVMAMQALLNNGDEVLVPAPDYP------LWTAAVSLSGGK 142
Query: 170 PV--VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSF 227
PV +CD + ++ + + K R K ++I NP+NP G +E L++IV
Sbjct: 143 PVHYLCDEEAGWFPDLDDIRS---KITP---RTKAIVIINPNNPTGAVYSKELLEEIVEI 196
Query: 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS-LSKDMGFPGFR 286
+ N+ + DEIY ++ + +SIA + D+ C + ++ LSK GFR
Sbjct: 197 ARQHNLIIFADEIYDKILY-DGAVHISIASLAP-DLLC------VTFNGLSKAYRVAGFR 248
Query: 287 VGIIYSYNDQVVSCARK-----------MSSFGLVSS-QTQHLIATMLSDDQFVEKFIAE 334
VG + V+S +K ++S L ++ QH I T L Q + + I
Sbjct: 249 VGWM------VLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILP 302
Query: 335 SAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLW----MDLHHLLKEQTYEAEMALWRVI 389
+ +R +A+ L+ + G+ C+K L+ + ++ + ++ + L +
Sbjct: 303 GGRLYEQRDRAWE-LLNAIPGVSCVKPKGALYAFPKLDPKVYPIHDDE----QFVL--DL 355
Query: 390 INEVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSFM 434
+ + K+ + G+ F+ P P FR+ +DD +E A+ RI F+
Sbjct: 356 LLQEKVLLVQGTGFNWPEPDHFRIVTLPRVDD--LEEAIGRIGRFL 399
|
Length = 404 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 30/294 (10%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY-- 152
G P R A+ + R N + + + I + GGA A + GD ++P PY
Sbjct: 71 GTPALRKAIIAKLE--RRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 153 -YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
YP D+ V V C FK+T EALEAA R + +++ PSNP
Sbjct: 129 SYP----DMVLANDGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLILNAPSNP 178
Query: 212 LGTFLDRETLKDIVSFINE-KNIHLVCDEIYAATVFTKE--SSFVSIAEIIDQDIACNRN 268
G R L+ + + ++ ++ D+IY F E ++ A + R+
Sbjct: 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL-------RD 231
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQF 327
+ + +SK G+R+G D + + + S S SS +Q A L+ DQ
Sbjct: 232 RVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQ- 290
Query: 328 VEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYE 380
F+ ES +R L+ + G+ CL + +L+++ L+ + T E
Sbjct: 291 --SFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPE 342
|
Length = 402 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 79/325 (24%), Positives = 137/325 (42%), Gaps = 36/325 (11%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGA--HETVAFCLADPGDAFLV-PT 150
G R A++ + + G + DPD +++ S G+ A H + F + ++ T
Sbjct: 37 GTKALREAISGWFERRFG--VKLDPDAQVLPSAGSKEAIFHFPLVFIDPEEDRRRVIFGT 94
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P YP ++R + G + V + F + +E +E + +E+ I V I P N
Sbjct: 95 PGYPVYERGALF-AGGEPTAVKLKKEDGFLLRLEKVEKSI--LEETKI----VWINYPHN 147
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
P G R LK+ ++ E I L DE Y F + S E+ +
Sbjct: 148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPH--SALEV-------GIENV 198
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQ-TQHLIATMLSDDQFV 328
+SLSK G G+R G + + +++++S RK+ ++FG+ S Q SDD V
Sbjct: 199 LAFHSLSKRSGMTGYRSGFV-AGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHV 257
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
E K + F ++VG+ L +A +LW+ + + + Y +
Sbjct: 258 L----ERRKIFKRKRDLFIEFFNKVGLEYLYPDATFYLWVKVPSGIDAKDYALRLL---- 309
Query: 389 IINEVKLNVSPGSSFHCPNPGWFRV 413
E + V+PG +F G+ RV
Sbjct: 310 ---ENGIVVAPGENFGSGEEGYVRV 331
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 57/260 (21%), Positives = 110/260 (42%), Gaps = 24/260 (9%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
KG + D G E + K+ K ++F + I+ + GA + DPGD
Sbjct: 57 KGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIMATVGACHGMYLALQSILDPGD 114
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS--SNDFKVTMEALEAAYEKAQESNIRIKG 202
++ PY+ + + G P++ ++ + F++ ++ LEA + K
Sbjct: 115 EVIIHEPYFTPYKDQIEMVGGK---PIILETYEEDGFQINVKKLEALI------TSKTKA 165
Query: 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262
+++ +P+NP G +ETL++I E ++ ++ DE+Y F+ FV +A
Sbjct: 166 IILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDG--FSFYEDFVPMAT----- 218
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---SFGLVSSQTQHLIA 319
+A S SKD G+R+G + + D ++ A+ ++ F + + I
Sbjct: 219 LAGMPERTITFGSFSKDFAMTGWRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIY 277
Query: 320 TMLSDDQFVEKFIAESAKRI 339
+ D V E KR+
Sbjct: 278 ALKHRDTIVPLIKEEFQKRL 297
|
Length = 384 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 91/354 (25%), Positives = 153/354 (43%), Gaps = 55/354 (15%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHETVAFCLADPGDAFLVP 149
Y G+ EFR AVA + + G + DP+ V+S G G AH + +PGD LVP
Sbjct: 68 YEGMLEFRKAVADWYKRRFG--VELDPETEVISLIGSKEGIAH--IPLAFVNPGDVVLVP 123
Query: 150 TPYYPGFDRDLRWRTGVQL-------VPVVCDSSNDFKVTMEAL-EAAYEKAQESNIRIK 201
P YP + + G +P+ + N F ++A+ E +KA K
Sbjct: 124 DPGYPVY------KIGTIFAGGEPYFMPLKEE--NGFLPDLDAIPEDVAKKA-------K 168
Query: 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID- 260
+ I P+NP G D E +++V F + +I + D Y+ + S E+
Sbjct: 169 LMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP-PSFLEVPGA 227
Query: 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHL--- 317
+D+ I +SLSK G+R+G N +++ K+ S + S Q +
Sbjct: 228 KDVG-----IEF-HSLSKTYNMTGWRIGFAVG-NADLIAGLGKVKS-NVDSGVFQAIQEA 279
Query: 318 -IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
IA + + VE+ K ER GL ++G+ A ++W + +
Sbjct: 280 GIAALNGPQEVVEEL----RKIYQERRDILVEGLRKLGLEVEPPKATFYVWAP----VPK 331
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
AE A +++++ + V+PG+ F G+FR+ D+R +E A+ RI
Sbjct: 332 GYTSAEFA--TLLLDKAGVVVTPGNGFGEYGEGYFRIALTVPDER-IEEAVERI 382
|
Length = 385 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 76/360 (21%), Positives = 143/360 (39%), Gaps = 40/360 (11%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHETVAFCLADPGDAFLVPTP 151
G+ EF AV ++ + + D+ V+ G G H + + A+PGD LVP P
Sbjct: 70 GIQEFHEAVTEYYNNTHN--VILNADKEVLLLMGSQDGLVHLPMVY--ANPGDIILVPDP 125
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
Y ++ ++ G + NDF +E + +E + K +++ P NP
Sbjct: 126 GYTAYETGIQM-AGATSYYMPLKKENDFLPDLELI------PEEIADKAKMMILNFPGNP 178
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNL 269
+ + K++++F + NI +V D YA F K SF+S+ + + N
Sbjct: 179 VPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEIN--- 235
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FGLVSSQTQHLIATMLSDDQ 326
SLSK G R+G + N+++V + S +G V Q L +
Sbjct: 236 -----SLSKSYSLAGSRIGYMIG-NEEIVRALTQFKSNTDYG-VFLPIQKAACAALRNG- 287
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
F ++ ER G G K +F+W ++ + + + ++
Sbjct: 288 --AAFCEKNRGIYQERRDTLVDGFRTFGWNVDKPAGSMFVWAEI-----PKGWTS-LSFA 339
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIA--LSRITSFMLKNVEAKVPN 444
+++ + V+PG +F G+ R+ ++ + + F L+ V+ V N
Sbjct: 340 YALMDRANVVVTPGHAFGPHGEGFVRIALVQDEEVLQQAVENIRNSGIFALEKVDELVKN 399
|
Length = 399 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-16
Identities = 90/355 (25%), Positives = 146/355 (41%), Gaps = 49/355 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVM-SGGATGAHETVAFCLADPGDAFLVPTPYY 153
GLPE R AVA + +G + DP+ VM + GAT A L +PGD ++ P Y
Sbjct: 64 GLPELRQAVAAHYARFQG--LDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLY 121
Query: 154 PGFDRDLRWRTGV-QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
+ +R GV +LV + +++ AL AA+ + R K VL+ NP NP
Sbjct: 122 DAYLPLIRRAGGVPRLVRL---EPPHWRLPRAALAAAF------SPRTKAVLLNNPLNPA 172
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G RE L + F + +CDE++ VF D + L+ +
Sbjct: 173 GKVFPREELALLAEFCQRHDAVAICDEVWEHVVF---------------DGRRHIPLMTL 217
Query: 273 ---------VYSLSKDMGFPGFRVGIIYSYND--QVVSCARKMSSFGLVSSQTQHLIATM 321
+ S K G++VG + + +V++ A + +F Q +A
Sbjct: 218 PGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFT-TPPNLQAAVAYG 276
Query: 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEA 381
L + + +A GL ++G L S FL +DL L E
Sbjct: 277 LGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQGTYFLTVDLAPLGLA---ED 330
Query: 382 EMALWRVIINEVKLNVSPGSSFHCPNP--GWFRVCFANMDDRTMEIALSRITSFM 434
++A R ++ E + P S+F+ +P R CFA D T++ A+ R+ +
Sbjct: 331 DVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDA-TLDEAVERLAAAR 384
|
Length = 387 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GL R A+A + + G + P+RIV++ GA+ A L + GD L+P P YP
Sbjct: 68 GLAPLREAIAAWYARRFG--LDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYP 125
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+R + V V + F++T +EAA+ R +GVL+ +PSNP GT
Sbjct: 126 C-NRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAW------GERTRGVLLASPSNPTGT 178
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
+ + L+ IV + + + DEIY + +++ VS A + D+ +
Sbjct: 179 SIAPDELRRIVEAVRARGGFTIVDEIYQGLSY--DAAPVS-ALSLGDDVI-------TIN 228
Query: 275 SLSKDMGFPGFRVG 288
S SK G+R+G
Sbjct: 229 SFSKYFNMTGWRLG 242
|
Length = 388 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 94/363 (25%), Positives = 152/363 (41%), Gaps = 51/363 (14%)
Query: 86 GIAIFQD--YHGLP------EFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHET 134
IA D HG P FR A+ + R + DPD + G G H
Sbjct: 57 AIAALADPQNHGYPPFEGTASFRQAITDWYH--RRYGVELDPDSEALPLLGSKEGLTHLA 114
Query: 135 VAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEAL-EAAYEKA 193
+A+ +PGD LVP+P YP R G Q+ P++ ND+ + + ++ E ++A
Sbjct: 115 LAY--VNPGDVVLVPSPAYPAHFRG-PLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQA 171
Query: 194 QESNIRIKGVLITN-PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252
+ +L N PSNP RE ++IV+F + I LV D YA F
Sbjct: 172 K--------ILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQP- 222
Query: 253 VSIAEIID-QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FG 308
S+ EI +DI ++LSK G+RVG + N ++ R + + +G
Sbjct: 223 TSLLEIPGAKDIGVE------FHTLSKTYNMAGWRVGFVVG-NRHIIQGLRTLKTNLDYG 275
Query: 309 LVSS-QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW 367
+ S+ Q A L D ++ + +R R GL ++G + A ++LW
Sbjct: 276 IFSALQKAAETALQLPDS-----YLQQVQERYRTRRDFLIQGLGELGWNIPPTKATMYLW 330
Query: 368 MDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427
+ + AL ++ + + V+PG++F G+ R+ DR E AL
Sbjct: 331 VP----CPVGMGSTDFAL--NVLQKTGVVVTPGNAFGEGGEGYVRISLIADCDRLGE-AL 383
Query: 428 SRI 430
R+
Sbjct: 384 DRL 386
|
Length = 394 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 88/353 (24%), Positives = 136/353 (38%), Gaps = 66/353 (18%)
Query: 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVA---FCLA-DPGDAFLVP 149
G PE R A+ ++ + RG DP ++ G E VA L PGD ++P
Sbjct: 56 WGTPELREAIVDWLERRRGVP-GLDPTAVL---PVIGTKELVAWLPTLLGLGPGDTVVIP 111
Query: 150 TPYYPGFDRDLRWRTGVQLV---PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
YP ++ G L PV D + + + +
Sbjct: 112 ELAYPTYE------VGALLAGATPVAADDP----------------TELDPVGPDLIWLN 149
Query: 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACN 266
+P NP G L + L+ IV++ E+ + DE Y + E VS I+D + C
Sbjct: 150 SPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGW--EGRPVS---ILDPRV-CG 203
Query: 267 ---RNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS---CARKMSSFGLVSSQTQHLIAT 320
L+ V+SLSK G+R G + + +V+ RK + +V + Q +
Sbjct: 204 GDHTGLL-AVHSLSKRSNLAGYRAGFVAG-DPALVAELLTVRKHAGL-MVPAPVQAAMVA 260
Query: 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYE 380
L DD V AE R A R L + G S AGL+LW
Sbjct: 261 ALGDDGHV----AEQKARYAARRAQLKPALEKAGFRIDHSEAGLYLW----------ATR 306
Query: 381 AEMALWRVI--INEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431
E A W + + E+ + V+PG + RV D+R + A++R+T
Sbjct: 307 GEDA-WDTVDRLAELGILVAPGDFYGPAGSQHVRVALTATDER-IAAAVARLT 357
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 7e-15
Identities = 77/356 (21%), Positives = 130/356 (36%), Gaps = 61/356 (17%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
AV ++ + G DP+ IV G + L PG+ +V TP YP F
Sbjct: 63 DSLYAAVINWLAQRHG--WQIDPEWIVFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPF 120
Query: 157 DRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
++ G +LV P+ D ++ +E LE + + +L+ +P NP+G
Sbjct: 121 LSAVK-SNGRELVLNPLKLDP-GRYRFDLEDLE------DAITEKARLLLLCSPHNPVGR 172
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHI 272
RE L + N+ +V DEI+A V+ K S++ I + + +
Sbjct: 173 VWTREELTRLAELCLRHNVVVVSDEIHADLVYPPNKHIPLASLSPEIAE------RTVTL 226
Query: 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARK---------MSSFGLVSSQT--------- 314
+ S K G + N ++ ++ + FG V+ +
Sbjct: 227 L-SPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQHGNLFGYVAFEAAYREGEPWL 285
Query: 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
L+A + + VE+FIA+ I A W+D L
Sbjct: 286 DALLAYLRGNRDLVEEFIAKRLP----------------QIRVRPPEATYLAWLDCRALG 329
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ L I + L ++PG SF G+ R+ F T+E AL R+
Sbjct: 330 LDDA-----DLRAFFIEQAGLGLNPGISFGDGGSGFMRLNFG-CPRSTLEQALERL 379
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 8e-15
Identities = 93/357 (26%), Positives = 138/357 (38%), Gaps = 65/357 (18%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATGAHETVAFCLADPGDAFLVPTPY 152
G P + A A F + G +T DP+ ++ GG G E + CL +PGD LVP P
Sbjct: 71 GYPFLKEAAADFYKREYG--VTLDPETEVAILFGGKAGLVE-LPQCLMNPGDTILVPDPG 127
Query: 153 YPGFDRDLRWR----TGVQLVPVVCDSSNDFKVTMEAL-EAAYEKAQESNIRIKGVLITN 207
YP + Q + + N+F + E EKA K + +
Sbjct: 128 YPDY-----LSGVALARAQFETMPLIAENNFLPDYTKIPEEVAEKA-------KLMYLNY 175
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIAC 265
P+NP G + ++ V+F + NI +V D Y A F K SF+ D I
Sbjct: 176 PNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIE- 234
Query: 266 NRNLIHIVYSLSKDMGFPGFRVG-------IIYSYN---DQVVSCARKMSSFGLVSSQTQ 315
+Y+LSK G+RV +I + N D + +S FG + Q
Sbjct: 235 -------LYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLF-----VSLFGAI----Q 278
Query: 316 HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK 375
L DQ +AE R R AF ++G F WM + K
Sbjct: 279 DAAIEALLSDQ---SCVAELVARYESRRNAFISACREIGWEVDAPKGSFFAWMPVP---K 332
Query: 376 EQTYE--AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
T E A++ L + + V+PG+ F G+ RV D+ + A+ RI
Sbjct: 333 GYTSEQFADLLL-----EKAHVAVAPGNGFGEHGEGYVRVGLL-TDEERLREAVERI 383
|
Length = 389 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 8e-15
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 36/249 (14%)
Query: 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG 155
E + A+A + G DP++I++ G+ E + +PGDA LVP P Y
Sbjct: 56 PAELKQALADYYG--------VDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSM 107
Query: 156 FDRDLRWRTGVQLVPVV-CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ + VV D ++ +E + A + + K V + +P+NP G
Sbjct: 108 Y----EISAKIHGAEVVKVPLDEDGQLDLEDILVAIDD------KPKLVFLCSPNNPTGN 157
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
L R ++ ++ E + +V DE Y F+ E S + + NLI ++
Sbjct: 158 LLSRSDIEAVLERTPEDAL-VVVDEAYGE--FSGEPSTLPLLAEYP-------NLI-VLR 206
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIA 333
+LSK G G R+G + N +++ K+ F +S Q L DD F+EK +
Sbjct: 207 TLSKAFGLAGLRIGYAIA-NAEIIDALNKVRAPFN-LSRLAQAAAIAALRDDDFIEKTVE 264
Query: 334 ESAKRIAER 342
E AER
Sbjct: 265 EI---NAER 270
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 77/350 (22%), Positives = 142/350 (40%), Gaps = 38/350 (10%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G R A+A + G + D +V+ G + A E LA+ G LVP P +P
Sbjct: 74 GALSAREAIASYYHNPDG---PIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFP 130
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ R L G+++ +++ ++ LE+ ++ + +++ NPSNP G+
Sbjct: 131 LY-RTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE------KTAALVVNNPSNPCGS 183
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
R+ L++I++ + + ++ DEIY VF ++F +A + ++ I
Sbjct: 184 VFSRQHLEEILAVAERQCLPIIADEIYGDMVF-SGATFEPVAS-LSSNVP-----ILSCG 236
Query: 275 SLSKDMGFPGFRVG--IIYSYNDQ--------VVSCARKMSSFGLVSSQTQH-LIATMLS 323
L+K PG+R+G II+ V R + +V L+ T
Sbjct: 237 GLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRTPQE 296
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383
+ +A + A GL V + +++ + + + ++ ++
Sbjct: 297 YFDGTLSVLESNAM-LCYGALAAVPGLQPV-----MPSGAMYMMVGI-EMEHFPEFKNDV 349
Query: 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+I E + PGS F PG+FRV + ME A SRI F
Sbjct: 350 EFTERLIAEQSVFCLPGSCFEY--PGFFRVVL-TVPVVMMEEACSRIQEF 396
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 85/344 (24%), Positives = 147/344 (42%), Gaps = 34/344 (9%)
Query: 94 HGLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPY 152
G+PE +A+A+ K G + DP++ + ++ G T A L +PGD ++ P+
Sbjct: 91 FGVPELNSAIAERFKKDTG--LVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPF 148
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
Y ++ L G ++ V DF V + L+AA+ + + +LI P NP
Sbjct: 149 YDSYEATLS-MAGAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAILINTPHNPT 200
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES-SFVSIAEIIDQDIACNRNLIH 271
G RE L+ I S E ++ DE+Y F + S S+ + ++ + N
Sbjct: 201 GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMN----- 255
Query: 272 IVYSLSKDMGFPGFRVG--IIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVE 329
SL K G+++G I + V A +F + +A + + + + E
Sbjct: 256 ---SLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYE 312
Query: 330 KFIAE-SAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
+ + SAK+ GL +VG S+ F+ +D H +E ++A
Sbjct: 313 ELKRDYSAKK-----DILVEGLKEVGFKVYPSSGTYFVMVD-HTPFG---FENDIAFCEY 363
Query: 389 IINEVKLNVSPGSSFHC-PNPGWFRVCFA-NMDDRTMEIALSRI 430
+I EV + P S F+ P G V FA D+ T+ A+ R+
Sbjct: 364 LIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERM 407
|
Length = 413 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 87/325 (26%), Positives = 134/325 (41%), Gaps = 51/325 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATG-AHETVAFCLADPGDAFLVPTP 151
G+P R A++++ + DP+ IV G G AH + D GD LVP P
Sbjct: 68 GIPRLRRAISRWY--QDRYDVDIDPESEAIVTIGSKEGLAH--LMLATLDHGDTVLVPNP 123
Query: 152 YYP----GF---DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
YP G +R V LV V DF LE A +ES + K ++
Sbjct: 124 SYPIHIYGAVIAGAQVR---SVPLVEGV-----DF---FNELERA---IRESYPKPKMMI 169
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT--KESSFVSIAEIIDQD 262
+ PSNP ++ E + +V+ ++ +V D YA V+ K S + + D
Sbjct: 170 LGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVA 229
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIAT 320
+ ++LSK G+R+G + + V + AR S +G + IA
Sbjct: 230 VEF--------FTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAA 281
Query: 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYE 380
+ D Q V IAE KR R GL + G A +++W + + Y
Sbjct: 282 LEGDQQCVRD-IAEQYKR---RRDVLVKGLHEAGWMVEMPKASMYVWAKI-----PEPYA 332
Query: 381 AEMAL--WRVIINEVKLNVSPGSSF 403
A +L + ++NE K+ VSPG F
Sbjct: 333 AMGSLEFAKKLLNEAKVCVSPGIGF 357
|
Length = 395 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 5e-14
Identities = 98/403 (24%), Positives = 169/403 (41%), Gaps = 85/403 (21%)
Query: 60 HELVEDWLMNNPKASICSAEGLNEFKGI-----AIFQDYH--GLPEFRNAVAKFMGKV-R 111
E+V D EG ++ KG+ AI Q GLP V + +
Sbjct: 165 DEVVYDMAQQLTDT-----EGYSDSKGLFSARKAIMQYAQLKGLP----NVD--VDDIYT 213
Query: 112 GNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL--- 168
GN ++ + I +S A L D GD L+P+P YP W V L
Sbjct: 214 GNGVS---ELINLSMSA----------LLDDGDEVLIPSPDYP------LWTACVNLAGG 254
Query: 169 --VPVVCDSSNDFKVTMEALEAAYEKAQESNI--RIKGVLITNPSNPLGTFLDRETLKDI 224
V CD +++ ++ + S I R K ++I NP+NP G RE L+ I
Sbjct: 255 TAVHYRCDEQSEWYPDIDDIR--------SKITSRTKAIVIINPNNPTGALYPREVLQQI 306
Query: 225 VSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYS-LSKDMG 281
V E + + DEIY V + +S S+A D+ C + +S LSK
Sbjct: 307 VDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLA----PDLFC------VTFSGLSKSHM 356
Query: 282 FPGFRVG-IIYSYNDQVVSCARK-------MSSFGLVSS-QTQHLIATMLSDDQFVEKFI 332
G+R+G +I S N ++ A+ +++ L S+ Q ++ T L Q V+ ++
Sbjct: 357 IAGYRIGWMILSGNKRI---AKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYL 413
Query: 333 AESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
+ +R + L+ + GI +K A +++ + + + AL +++
Sbjct: 414 VPGGRVYEQRELVYN-ALNAIPGISAVKPKAAFYIFPKIDVKKFNIHDDEQFAL--DLLH 470
Query: 392 EVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSF 433
+ K+ + G+ F+ P FRV + ++D +E A+ R+ F
Sbjct: 471 DKKVLIVQGTGFNWDKPDHFRVVYLPRLED--LEDAMDRLADF 511
|
Length = 517 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 85/339 (25%), Positives = 142/339 (41%), Gaps = 55/339 (16%)
Query: 43 KNPN-GVIQMGLAENLLCHELVEDWLMNNPKASICSAE-GLNEFKGIAIFQDYHGLPEFR 100
K+P+ +I MG+ E D + + + E E +G A D +G+ EF+
Sbjct: 40 KHPDMELIDMGVGEP--------DEMADESVVEVLCEEAKKPENRGYA---D-NGIQEFK 87
Query: 101 NAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD 159
A A++M KV G + DP ++ S G+ A + C +PGD L+ P YP
Sbjct: 88 EAAARYMEKVFGVK-DIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTH 146
Query: 160 LRWRTGVQLVPVVCDSSNDFKVTMEAL-EAAYEKAQESNIRIKGVLITN-PSNPLGTFLD 217
++ G ++ + N+F ++++ + EKA+ +L N P+NP G
Sbjct: 147 TKYYGG-EVYNLPLLEENNFLPDLDSIPKDIKEKAK--------LLYLNYPNNPTGAVAT 197
Query: 218 RETLKDIVSFINEKNIHLVCDEIYAATVFT-KESSFVSIAEIIDQDIACNRNLIHIVYSL 276
+E +++V F E NI +V D YAA F K SF+S+ + + IH SL
Sbjct: 198 KEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVE-----IH---SL 249
Query: 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV-----SSQ---TQHLIATMLSDDQFV 328
SK G+R+ + N+ +V +F V S Q Q L +
Sbjct: 250 SKAYNMTGWRLAFVVG-NELIV------KAFATVKDNNDSGQFIAIQKAGIYALDHPEIT 302
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW 367
EK ++ + R L++VG +L+
Sbjct: 303 EK----IREKYSRRLDKLVKILNEVGFKAEMPGGTFYLY 337
|
Length = 410 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-13
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
E + N I G+L+ NP NP G +E L++IV E ++ ++CDEIY V+ +
Sbjct: 163 ENKVKYNPSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKK 222
Query: 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN 294
+ V ++E+I L I SK++ +PG R G I YN
Sbjct: 223 T-VPLSEVIGD--VPGIALKGI----SKELPWPGSRCGWIEVYN 259
|
Length = 433 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 90/367 (24%), Positives = 147/367 (40%), Gaps = 62/367 (16%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GL R A+A+++ R D I ++ G A E + LA PG L+P P YP
Sbjct: 95 GLLPARRAIAEYLS--RDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYP 152
Query: 155 GFD-RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
++ R + V+ ++ + ++V +E +EA A E+ + + +I NP+NP G
Sbjct: 153 LYEARAVFSGLEVRHFDLLPER--GWEVDLEGVEAL---ADENTVAM---VIINPNNPCG 204
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV------SIAEIIDQDIACNR 267
+ E L I + I ++ DE+Y F FV +A ++
Sbjct: 205 SVYSYEHLAKIAETARKLGILVIADEVYDHLTF-GSKPFVPMGVFGEVAPVL-------- 255
Query: 268 NLIHIVYSLSKDMGFPGFRVGIIYS-------YNDQVVSCARKMSSFG-----LVSSQTQ 315
+ S+SK PG+R+G I + +VV R + V
Sbjct: 256 ----TLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIP 311
Query: 316 HLIATMLSDDQFVEKFI---AESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWM---D 369
+IA + ++F K + E+A E+ K I C G M D
Sbjct: 312 QIIAN--TKEEFFTKTLGLLKETADICYEKIKEIK------CITCPHKPEGSMFVMVKLD 363
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L L + +M + E + V PGS+ N W R+ FA +D ++E L R
Sbjct: 364 LSCL---SGIKDDMDFCCKLAKEESVVVLPGSALGMKN--WLRITFA-IDPPSLEDGLER 417
Query: 430 ITSFMLK 436
+ SF L+
Sbjct: 418 LKSFCLR 424
|
Length = 430 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G+PE R A+A + G + +DPD ++++ GAT A L +PGD L+ PYY
Sbjct: 62 GIPELRAAIAAQRRRRYG--LEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYY 119
Query: 154 PGFDRDLRW----RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
+ + R V LVP F + ++AL AA R + +++ +P
Sbjct: 120 DSYAAVIAMAGAHRVPVPLVP----DGRGFALDLDALRAAVTP------RTRALIVNSPH 169
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247
NP GT L L I E ++ ++ DE+Y VF
Sbjct: 170 NPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFD 207
|
Length = 387 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 73/366 (19%), Positives = 141/366 (38%), Gaps = 72/366 (19%)
Query: 90 FQDYHGLPEFRNAVA-KFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFL 147
+Q G+P A+ K + N I + ++ IV++ G+ A + DPGD +
Sbjct: 61 YQAVQGIPPLLEAITQKLQ---QDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEII 117
Query: 148 VPTPYYPGFDRDLRWRTGVQL---VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
+ TPYY F+ ++ + + P++ + +++++ EA+E A + + ++
Sbjct: 118 LNTPYY--FNHEM----AITMAGCQPILVPTDDNYQLQPEAIEQAITP------KTRAIV 165
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
+P+NP G L+ + E I+ + DE Y + F S I
Sbjct: 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHF-SPGSIPGSG-- 222
Query: 265 CNRNLIHIV--YSLSKDMGFPGFRVGI----------IYSYNDQVVSCARKMSSFGLV-- 310
H + YSLSK GF +R+G I D ++ C +S + +
Sbjct: 223 -----NHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGA 277
Query: 311 ----SSQTQHLIATMLSDDQFVEKFIAESAKR--IAERHKAFTWGLSQVGIGCLKSNAGL 364
S Q + + Q + K + + R + + AF
Sbjct: 278 LQVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAF------------------ 319
Query: 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424
+ LK T + L + +I E ++ V PG++F N + R+ + + T +
Sbjct: 320 ------YCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAK 373
Query: 425 IALSRI 430
+ R+
Sbjct: 374 EGIERL 379
|
Length = 389 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 8e-12
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 31/244 (12%)
Query: 112 GNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YYPGFDRDLRWRTG-VQ 167
+R P+++ ++ G GA + +A + DPGD LVP P YY R+ G V+
Sbjct: 75 ADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYG---MSARYHHGEVR 131
Query: 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSF 227
PV ++DF+ T + + AY+ RI V +T+P NP G+ + + ++ +
Sbjct: 132 EYPV--SKADDFEQTADTVLDAYDGE-----RI--VYLTSPHNPTGSEIPLDEVEALAER 182
Query: 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV 287
+E+ + +V DE Y F + S V++ E D D+A ++ + SK G G R+
Sbjct: 183 TDEETL-VVVDEAYGE--FAERPSAVALVEERD-DVA-------VLRTFSKAYGLAGLRL 231
Query: 288 GIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFI---AESAKRIAERHK 344
G + + AR + F + +A L DD+ VE+ + + + I E
Sbjct: 232 GYAVVPEEWADAYARVNTPFAASELACRAGLAA-LDDDEHVERTVETARWAREYIREELD 290
Query: 345 AFTW 348
A TW
Sbjct: 291 APTW 294
|
Length = 357 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 73/286 (25%), Positives = 113/286 (39%), Gaps = 50/286 (17%)
Query: 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVA---FCL-ADPGDAFLVP 149
G PE R A+ ++ + RG DP ++ G+ E VA L PGD ++P
Sbjct: 62 AGTPELREAIVGWLARRRGVTGL-DPAAVL---PVIGSKELVAWLPTLLGLGPGDVVVIP 117
Query: 150 TPYYPGFDRDLRWRTGVQLV---PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
YP ++ G +L V DS + L R + +
Sbjct: 118 ELAYPTYE------VGARLAGATVVRADS-------LTELGPQ---------RPALIWLN 155
Query: 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI--AEIIDQDIA 264
+PSNP G L + L+ +V++ E+ + DE Y ++ VSI + D
Sbjct: 156 SPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLE--LGWDAEPVSILDPRVCGGD-- 211
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS---CARKMSSFGLVSSQTQHLIATM 321
+ L+ V+SLSK G+R G + + +V+ RK + +V + Q +
Sbjct: 212 -HTGLL-AVHSLSKQSNLAGYRAGFVAG-DPALVAELLEVRKHAGM-MVPAPVQAAMVAA 267
Query: 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW 367
L DD V E +R A R L G S AGL+LW
Sbjct: 268 LGDDAHV----REQRERYARRRAVLRPALEAAGFRVDHSEAGLYLW 309
|
Length = 364 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 38/243 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD---PGDAFLVPTP 151
G PE R + K +G D D +++ GAT E++ + PGD + P P
Sbjct: 67 GFPELRELILKDLG--------LDDDEALITAGAT---ESLYLVMRAFLSPGDNAVTPDP 115
Query: 152 YYP---GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
Y F R+ V VP+ ++K+T E ++ + N R+ + + +P
Sbjct: 116 GYLIIDNFAS--RFGAEVIEVPIY-SEECNYKLTPELVKENMD----ENTRL--IYLIDP 166
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
NPLG+ E +K+ + + L+ D Y F +E + + + A
Sbjct: 167 LNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD--FAREHTLAA-------EYAPEHT 217
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA-RKMSSFGLVSSQTQHLIATMLSDDQF 327
+ YS SK G G R+G + + D + ++ G + IA + D++
Sbjct: 218 V--TSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVKDEW 275
Query: 328 VEK 330
+++
Sbjct: 276 IDR 278
|
Length = 380 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 74/353 (20%), Positives = 128/353 (36%), Gaps = 54/353 (15%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
E A+A + K R P+ IV G L PGD ++ TP YP F
Sbjct: 63 DELYAAIAHWF-KQRHQ-WEIKPEWIVFVPGVVPGISLAIRALTKPGDGVVIQTPVYPPF 120
Query: 157 DRDLRWRTGVQLVPVVCDSSND-FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF 215
G +++ + +++ +ALE A+ R+K ++ NP NP G
Sbjct: 121 YN-AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDE-----RVKLFILCNPHNPTGRV 174
Query: 216 LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275
+E L+ I + ++ DEI+A V + A + + A + + S
Sbjct: 175 WTKEELRKIAELCLRHGVRVISDEIHADLVL-GGHKHIPFA-SLSERFA---DNSITLTS 229
Query: 276 LSKDMGFPGFRVGIIYSYND---QVVSCARKM------SSFGLVSSQT------QHLIAT 320
SK G + I N K S+ G+++++ L
Sbjct: 230 ASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDEL 289
Query: 321 M--LSDD-QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQ 377
+ L D+ +V F+ +K + + W+D L +
Sbjct: 290 LEYLKDNRDYVADFL----------NKHLPG------VKVTEPQGTYLAWLDCRELGLD- 332
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ L ++ E K+ +SPGS+F G+ R+ FA +E AL R+
Sbjct: 333 ----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-CPRAILEEALERL 380
|
Length = 388 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 9e-11
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 42/253 (16%)
Query: 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSG-GATGAHETVAFCLADPGDAFLVPTPYYP 154
PE R A++K+ G + I++ G G +T+ DPGD ++PTP +
Sbjct: 71 APELREALSKYTG--------VPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFS 122
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEA-LEAAYEKAQESNIRIKGVLITNPSNPLG 213
++ + PV DF + +++ L A EK K + + P+NP G
Sbjct: 123 YYEISAKAHGA---KPVYAKREEDFSLDVDSVLNAITEKT-------KVIFLCTPNNPTG 172
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQ-DIACNRNLIHI 272
+ E ++ I + + + DE Y E + + + D NLI I
Sbjct: 173 NLIPEEDIRKI---LESTDALVFVDEAYV------EFAEYDYTPLALEYD-----NLI-I 217
Query: 273 VYSLSKDMGFPGFRVGIIYSY-NDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
+ SK G G R+G Y + + ++ + + ++ +Q LSD +++EK
Sbjct: 218 GRTFSKVFGLAGLRIG--YGFVPEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKEYIEKS 275
Query: 332 IA---ESAKRIAE 341
I +S + +
Sbjct: 276 IEHGIKSREYLYN 288
|
Length = 361 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 40/198 (20%)
Query: 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT 150
+Y L R A A + G ++ GA A + LA PG LV
Sbjct: 47 PEYDEL---RAAAAAYYG--------LPAASVLPVNGAQEAIYLLPRLLA-PGRV-LVLA 93
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P Y + R R G ++V + + L AA E +++ NP+N
Sbjct: 94 PTYSEYARAWR-AAGHEVVELPDL---------DRLPAALE-------EADLLVVCNPNN 136
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
P G + ETL + + + + LV DE + FT ++S A A L+
Sbjct: 137 PTGRLIPPETLLALAARLRARGGWLVVDEAFID--FTPDASLAPQA-------ARFPGLV 187
Query: 271 HIVYSLSKDMGFPGFRVG 288
++ SL+K G G R+G
Sbjct: 188 -VLRSLTKFFGLAGLRLG 204
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 23/204 (11%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+ R AVA +M + +++T P+ I ++ G E V LA P L+P P +P
Sbjct: 109 GILPARRAVADYMNRDLPHKLT--PEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFP 166
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+D + +G+++ ++++ +E +EA A E+ + +++ NP+NP G
Sbjct: 167 HYDARAAY-SGLEVRKFDLLPEKEWEIDLEGIEAI---ADENTV---AMVVINPNNPCGN 219
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI---AEIIDQDIACNRNLIH 271
+ LK + + I ++ DE+Y T+F ++ FVS+ A I+ +
Sbjct: 220 VYSHDHLKKVAETARKLGIMVISDEVYDRTIF-GDNPFVSMGKFASIVP---------VL 269
Query: 272 IVYSLSKDMGFPGFRVGIIYSYND 295
+ +SK PG+++G I + ND
Sbjct: 270 TLAGISKGWVVPGWKIGWI-ALND 292
|
Length = 462 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 83/349 (23%), Positives = 144/349 (41%), Gaps = 34/349 (9%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHETVAFCLADPGDAFLVP 149
+HG +FR A A++ + G + DP+ V+ G G AH +A + +PGD L+
Sbjct: 67 FHGTLDFREAAAQWYEQRFG--LAVDPETEVLPLIGSQEGTAHLPLA--VLNPGDFALLL 122
Query: 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
P YP + G Q+ P+ + NDF + + + ++++ P
Sbjct: 123 DPGYPSHAGGVYLAGG-QIYPMPLRAENDFLPVFADIPTEVLA------QARLMVLSYPH 175
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269
NP ++ V+F + ++ LV D Y VF E SI + D + + +
Sbjct: 176 NPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQA-DPEKSVSIEF 234
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FGLVSSQTQHLIATMLSDDQ 326
++LSK GFR+G N Q++ R++ + F IA +
Sbjct: 235 ----FTLSKSYNMGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQA 289
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
V++ + +R AF L Q+G A +++W L + + E L
Sbjct: 290 TVQQTVQ----IFRQRRDAFINALHQIGWPVPLPEATMYVWAKLPEPWQGNSVEFCTQL- 344
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR-TMEIALSRITSFM 434
+ + + SPGS F G+ R FA + D +E A+ RI +F+
Sbjct: 345 ---VAQTGVAASPGSGFGKSGEGYVR--FALVHDPDILEEAVERIAAFL 388
|
Length = 388 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 6e-10
Identities = 83/357 (23%), Positives = 147/357 (41%), Gaps = 48/357 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+ R A+A ++ +++ PD + ++ G A E + LA P L+P P +P
Sbjct: 75 GILPARRAIADYLSNDLPYQLS--PDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFP 132
Query: 155 GFD-----RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
+ L R L+P ++V ++A+EA A E+ I ++I NP
Sbjct: 133 DVETYAIFHHLEIRH-FDLLP-----EKGWEVDLDAVEAI---ADENTI---AMVIINPG 180
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-----SSFVSIAEIIDQDIA 264
NP G+ E L I + I ++ DE+Y VF + F SI +I
Sbjct: 181 NPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVI----- 235
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYND----QVVSCARKMSSFGLVSSQTQHLIAT 320
+ S+SK PG+ +G + + + Q+ A + + I
Sbjct: 236 -------TLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQA 288
Query: 321 MLSD--DQFVEKFIAESAKRIAERHKAFTWG-LSQVG-IGCLKSNAGLFLWMDLHHLLKE 376
+ + ++ E F +++ I AF + L ++ I C + G F + +LL
Sbjct: 289 AIPEILEKTTEDFFSKTIN-ILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLL 347
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
+ E +M + E L + PG + N W R+ FA ++ ++E L R+ SF
Sbjct: 348 EDIEDDMEFCLKLAKEESLIILPGVTVGLKN--WLRITFA-VEQSSLEDGLGRLKSF 401
|
Length = 409 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 56/259 (21%), Positives = 90/259 (34%), Gaps = 34/259 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVPTP 151
G R A+A +R +VM+ G+ E + L PGD +V P
Sbjct: 52 GGEGLRAAIA--------DRWRGGDAHVVMT--THGSSEAIYLVLTALLRPGDEVVVVDP 101
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
Y G ++ P + F+ ++AL A R + V++ P NP
Sbjct: 102 AYHSLSHLAVAT-GCEVRPWPLLAVRGFRPDLDALRALLTP------RTRAVVVNFPHNP 154
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G + L +++ L+ D +A V + + D+ I+
Sbjct: 155 TGASVTPRELDELLERAARSGAVLLWDNAFADLVHDAP-PLPDPSALYDRVISFG----- 208
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIA--TMLSDDQFVE 329
+LSK G PG RVG D + R L S L+A + D +
Sbjct: 209 ---TLSKAFGLPGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVELLAEVAVEHADALIG 265
Query: 330 KFIAESAKRIAERHKAFTW 348
+AE+ A R + W
Sbjct: 266 PRLAEAR---ANRRRLLDW 281
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262
V + NP+NP G + +E +K I+ ++NI+L+ DE A F +E+ +S+ ++
Sbjct: 145 VFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDE--AFMDFLEENETISMINYLEN- 201
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS------SFGLVSSQTQH 316
+NLI I+ + +K PG R+G + N + +M +F ++ Q
Sbjct: 202 ---FKNLI-IIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQ--- 254
Query: 317 LIATMLSDDQFVEK---FIAESAKRIAERHKAF 346
T+L D ++++K +I E + F
Sbjct: 255 ---TLLDDKEYIKKTIQWIKEEKDFLYNGLSEF 284
|
Length = 354 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 59/266 (22%)
Query: 139 LADPGD--AFLVP--TPY-----YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
L GD A + P TPY P +D ++ ++ + D ++ ++ + LE
Sbjct: 180 LLKKGDKIALMTPIFTPYLEIPELPRYDFEV---VRIKADEMTEDGTHTWQYPDKELEKL 236
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHL--VCDEIYAATVFT 247
+ + IK + + NPSNP + E+++ IV + L + D++Y V
Sbjct: 237 RDPS------IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV-- 288
Query: 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-------VSC 300
F S+ + + VYS SK G G+R+G I + D + +
Sbjct: 289 --DDFRSLFAELPYNTIG-------VYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPE 339
Query: 301 ARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS---QVGIGC 357
+K + + T +F+++ +A+S +++A H A GLS QV +
Sbjct: 340 EKKKE-----LDKRYSSLTTEPRKLKFIDRLVADS-RQVALNHTA---GLSTPQQVQMA- 389
Query: 358 LKSNAGLFLWMDLHHLLKEQTYEAEM 383
L S LF MD KE Y+AE
Sbjct: 390 LFS---LFALMD-----KENAYKAET 407
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 67/276 (24%)
Query: 139 LADPGD--AFLVP--TPYY--PGFDR-DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191
L GD A + P TPY P R DL ++V + D N+++ LE +
Sbjct: 186 LLKAGDKIALMTPIFTPYLEIPELPRYDL------EVVHINADEENEWQYPDSELEKLRD 239
Query: 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLV--CDEIYAATVFTKE 249
+ IK + + NPSNP + E+L+ I +NEK L+ D++Y V
Sbjct: 240 PS------IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV---- 289
Query: 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL 309
F S+ + N I +VYS SK G G+R+G+I + D V K+ + L
Sbjct: 290 DDFRSLFAV------LPYNTI-LVYSFSKYFGATGWRLGVIALHEDNVFD---KLIA-KL 338
Query: 310 VSSQTQHL------IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS---QVGIGCLKS 360
+ + L + T +F+++ +A+S +++A H A GLS QV +
Sbjct: 339 PEEKKKELDKRYSSLTTDPEKLKFIDRLVADS-RQVALNHTA---GLSTPQQVQM----- 389
Query: 361 NAGLFLWMDLHHLLKEQTYEAEM---------ALWR 387
LF L L +E Y+ M AL+
Sbjct: 390 --ALFSLFAL--LDEEDAYKKAMKDIIRRRYKALYE 421
|
Length = 527 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 90/374 (24%), Positives = 163/374 (43%), Gaps = 66/374 (17%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLP+ R A+A+++ + +++ D + ++ G T A + LA PG L+P P +P
Sbjct: 74 GLPQARRAIAEYLSRDLPYKLSLDD--VFITSGCTQAIDVALSMLARPGANILLPRPGFP 131
Query: 155 GFD-----RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
++ R L R V L+P ++V ++A+EA A ++ + ++I NP
Sbjct: 132 IYELCAAFRHLEVRY-VDLLP-----EKGWEVDLDAVEAL---ADQNTV---ALVIINPG 179
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-----SSFVSIAEIIDQDIA 264
NP G + LK I + I ++ DE+Y F F SI ++
Sbjct: 180 NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVL----- 234
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYS-------YNDQVVSCARK-MSSFGLVSSQTQH 316
+ SLSK PG+R+G + + ++V +K G ++ Q
Sbjct: 235 -------TLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQA 287
Query: 317 LIATML--SDDQFVEKFI---AESAKRIAERHKAFTWGLSQVGIGCL----KSNAGLFLW 367
+ T+L +D+ F +K I +S+ +R K I C+ K + +
Sbjct: 288 AVPTILEQTDESFFKKTINILKQSSDICCDRIKE---------IPCITCPHKPEGSMAVM 338
Query: 368 MDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427
+ L+ L E + ++ + E + + PG++ N W R+ FA D ++E AL
Sbjct: 339 VKLNLSLLEDISD-DIDFCFKLAREESVIILPGTAVGLKN--WLRITFA-ADPSSLEEAL 394
Query: 428 SRITSFMLKNVEAK 441
RI SF L++ + +
Sbjct: 395 GRIKSFYLRHSKTQ 408
|
Length = 409 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 9e-08
Identities = 58/251 (23%), Positives = 102/251 (40%), Gaps = 33/251 (13%)
Query: 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSND 178
P I + G+ + + GD + P P + + G +PV D
Sbjct: 76 PTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMY-SVYSKIAGAVEIPV--KLKED 132
Query: 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCD 238
+ + + EK Q K V + NP+NP G+ ++RE DI+ I + +V D
Sbjct: 133 YTYDVGSFIKVIEKYQP-----KLVFLCNPNNPTGSVIERE---DIIKIIEKSRGIVVVD 184
Query: 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV 298
E Y F +I ++I++ NLI ++ +LSK G G RVG + N+ ++
Sbjct: 185 EAYFE--FYGN----TIVDVINE----FENLI-VLRTLSKAFGLAGLRVGYAVA-NENIL 232
Query: 299 SCARKMSSFGLVSSQTQHLIATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQV-GI 355
+ S ++S +Q + +L E+ +I +R+ + LS++ GI
Sbjct: 233 KYLNLVKSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIK-------ELSKIPGI 285
Query: 356 GCLKSNAGLFL 366
S L
Sbjct: 286 KVYPSKTNFIL 296
|
Length = 351 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 70/274 (25%), Positives = 112/274 (40%), Gaps = 53/274 (19%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD-------AFLVPT 150
E + A+A+ G DP+RI++ G+ E +A PGD F V
Sbjct: 71 ELKAALAEKFG--------VDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAV-- 120
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
YP + G + V V + D+ ++A+ AA R + V I NP+N
Sbjct: 121 --YPIAAQ----AVGAKPVEV---PAKDYGHDLDAMLAAVTP------RTRLVFIANPNN 165
Query: 211 PLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
P GT+L E ++ F+ ++ +V DE YA + + + E++ + N
Sbjct: 166 PTGTYLPAE---EVERFLAGVPPDVLVVLDEAYAE--YVRRKDYEDGLELVAK----FPN 216
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA--RKMSSFGLVSSQTQHLIATMLSDDQ 326
++ + + SK G G RVG Y + A R F V+S L DD
Sbjct: 217 VV-VTRTFSKAYGLAGLRVG--YGIAPPEIIDALNRVRQPFN-VNSLALAAAVAALDDDA 272
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360
FVEK A +A T L+++G+ + S
Sbjct: 273 FVEKSRALNA---EGMAW-LTEFLAELGLEYIPS 302
|
Length = 367 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 60/219 (27%), Positives = 87/219 (39%), Gaps = 63/219 (28%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT----------GAHETVAFCLADPGD 144
G P R A+A+ RI DP+ I +S GA G TVA
Sbjct: 76 GYPFLREAIAE---NDYRGRI--DPEEIFISDGAKCDVFRLQSLFGPDNTVA-------- 122
Query: 145 AFLVPTPYYP-------------GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191
V P YP D D R+ ++ + C + N+F +
Sbjct: 123 ---VQDPVYPAYLDSNVMAGRAGVLDDDGRYS---KITYLPCTAENNFIPEL-------- 168
Query: 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251
+E +I I + + +P+NP GT L +E LK++V + NE ++ D Y+A F + S
Sbjct: 169 -PEEPHIDI--IYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSA--FISDPS 223
Query: 252 F-VSIAEIID-QDIACNRNLIHIVYSLSKDMGFPGFRVG 288
SI EI + A S SK GF G R+G
Sbjct: 224 LPHSIFEIPGARFCAIEFR------SFSKTAGFTGVRLG 256
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 85/368 (23%), Positives = 147/368 (39%), Gaps = 39/368 (10%)
Query: 81 LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETV-AF-- 137
G++ + GLPE R A+A+++ + DP+R V+ G E + AF
Sbjct: 51 RENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLP--VNGTREALFAFAQ 108
Query: 138 CLADPGDAFLV--PTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195
+ +PG A LV P P+Y ++ G + + C + N F +A+ + +
Sbjct: 109 AVINPGQAPLVVMPNPFYQIYE-GAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR--- 164
Query: 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255
R + + + +P NP G L +TLK ++ ++ + DE Y+ F + + +
Sbjct: 165 ---RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGL 221
Query: 256 ----AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVS 311
A++ D R + + +SLSK PG R G + + + + R + G
Sbjct: 222 LQAAAQLGRDDF---RRCL-VFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAM 277
Query: 312 SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLH 371
L + +D E+ + E+ E+ A L QV + +AG +LW
Sbjct: 278 PIPTQLASIAAWND---EQHVRENRALYREKFAAVLEILGQV-LDLELPDAGFYLWP--- 330
Query: 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSF----HCPNPGWFRVCFANMDD-RTMEIA 426
+ + A R + E + V PG NPG RV A + A
Sbjct: 331 -----KVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEA 385
Query: 427 LSRITSFM 434
RI SF+
Sbjct: 386 AERIRSFI 393
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 77/342 (22%), Positives = 146/342 (42%), Gaps = 32/342 (9%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G+ + R A+ + + + DP+ +V + G+ + + + +PGD +VP P Y
Sbjct: 72 GIYKLRLAICNWYKRKYN--VDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAY 129
Query: 154 PGFDRDLRWRTG-VQLVPVVCDSSNDFKVTMEALEAAYEKA-QESNIRIKGVLITNPSNP 211
P + G V +P+ + DF++ + EKA +ES+ + K V++ P NP
Sbjct: 130 PIHSQAFILAGGNVHKMPLEYNE--DFELDEDQFFENLEKALRESSPKPKYVVVNFPHNP 187
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT--KESSFVSIAEIIDQDIACNRNL 269
+++ + +V+ ++ +++ D YA F K S + + D +
Sbjct: 188 TTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVES---- 243
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FGLVSS-QTQHLIATMLSDD 325
Y+LSK G+RVG + N ++V +K+ S +G+ + Q IA L D
Sbjct: 244 ----YTLSKSYNMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIA--LDGD 296
Query: 326 Q-FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMA 384
Q VE+ KR ++F + G K A +F+W + + +
Sbjct: 297 QSCVEEIRETYRKRRDVLIESF----ANAGWELQKPRASMFVWAKIPEPARHL---GSLE 349
Query: 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIA 426
+ ++ E K+ VSPG F + R+ ++R + A
Sbjct: 350 FSKQLLTEAKVAVSPGIGFGEYGDEYVRIALIENENRIRQAA 391
|
Length = 403 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G+ R A+A ++ G + +D D I ++ GAT A L PGD +V P Y
Sbjct: 68 GVAALREAIAAKTARLYGRQ--YDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSY 125
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ + G V V DF+V + AA + R + +++ P NP G
Sbjct: 126 DSYAPAIELAGGR-AVRVALQPP-DFRVDWQRFAAAI------SPRTRLIILNTPHNPSG 177
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246
T ++ + I +I+++ DE+Y VF
Sbjct: 178 TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVF 210
|
Length = 386 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G+P R A A + + G + +PD ++V + G+ +A + PGD L P P Y
Sbjct: 69 GIPGLRRAQAAYYARRFG--VKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSY 126
Query: 154 P----GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-P 208
P GF + ++ VP D E A E+A +I LI N P
Sbjct: 127 PIHAFGF---IMAGGVIRSVPAEPD---------EEFFPALERAVRHSIPKPIALIVNYP 174
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID-QDIACNR 267
SNP D + KD+V+F + +I ++ D Y+ F S+ ++ +D+
Sbjct: 175 SNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPP-PSVLQVPGAKDVTVEF 233
Query: 268 NLIHIVYSLSKDMGFPGFRVG 288
S+SK G+R+G
Sbjct: 234 T------SMSKTFSMAGWRMG 248
|
Length = 405 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 21/211 (9%)
Query: 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGD 144
G+ + +Y G + R +A + G + D D ++++ G GA GD
Sbjct: 70 GVQAYTEYRGDADIRELLAARLAAFTGAPV--DAADELIITPGTQGALFLAVAATVARGD 127
Query: 145 AFLVPTPYYPGFD-RDLRWRTGVQLVPVVCDSSNDFK---VTMEALEAAYEKAQESNIRI 200
+ P Y F R L ++VPV D + K + ++ LE A++ +
Sbjct: 128 KVAIVQPDY--FANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG------V 179
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260
+ L +NP+NP G E + I + ++ D++Y+ ++ S A ID
Sbjct: 180 RVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPID 239
Query: 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIY 291
+ N+I I+ SK G+R+G+ +
Sbjct: 240 PE-----NVITIM-GPSKTESLSGYRLGVAF 264
|
Length = 405 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 80/345 (23%), Positives = 137/345 (39%), Gaps = 53/345 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATGAHETVAFCLADPGDAFLVPTPY 152
G+ R A+A+ ++ G R +DP V++ + G + ++ L PGD + +
Sbjct: 67 GIAALREALAEKTERLYGAR--YDPASEVTVIASASEGLYAAIS-ALVHPGDEVIY---F 120
Query: 153 YPGFDRDLRWRTGVQL---VPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
P FD + V+L PV S DF+V + + AA R + +++ P
Sbjct: 121 EPSFDS---YAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAI------TPRTRMIIVNTP 171
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
NP T L + +I ++ DE+Y VF +A +R
Sbjct: 172 HNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGA---------RHHSMARHRE 222
Query: 269 LIH---IVYSLSKDMGFPGFRVGIIYS---YNDQVVSCARKMSSFGLVSSQT--QHLIAT 320
L IV S K G+RVG + D++ RK+ F + S+ T QH A
Sbjct: 223 LAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEI----RKVHQFMVFSADTPMQHAFAE 278
Query: 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYE 380
L++ ++ A +R L+ L S F+ H E +
Sbjct: 279 ALAEPA---SYLGLGAFYQRKR-DLLARELAGSRFELLPSEGSFFMLARFRHFSDES--D 332
Query: 381 AEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTM 423
++ L R+I + ++ P S+F+ + G R+ F+ DD T+
Sbjct: 333 SDFVL-RLIR-DARVATIPLSAFYTDGTDTGLIRLSFSK-DDATL 374
|
Length = 384 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 50/279 (17%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-PGDAFLVPTPYY 153
R A+A+F G D + I + G+ E +++ + G ++ P +
Sbjct: 56 TSDPLREAIAEFYG--------LDAENIAV---GNGSDELISYLVKLFEGKHIVITPPTF 104
Query: 154 P--GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
F L G+ ++ V DF + E + + A V I +P+NP
Sbjct: 105 GMYSFYAKLN---GIPVIDVPLK--EDFTIDGERIAEKAKNA-------SAVFICSPNNP 152
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G E + ++ E +V DE YA E S S+ +ID+ NLI
Sbjct: 153 TGNLQPEEEILKVL----ETGKPVVLDEAYA------EFSGKSLIGLIDE----YPNLI- 197
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
++ + SK G G R G + + + + R F ++ T ++ L +E+
Sbjct: 198 LLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPFS-LNILTMKIVRLALDHYDLIEER 256
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
I I ER + ++G S+A FL + L
Sbjct: 257 IDYI---IKERERVR----RELGEYAYPSDAN-FLLLKL 287
|
Length = 337 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 7e-06
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260
K V I NP+NP GT+++ L + I+E N +V DE Y V K+ F +++
Sbjct: 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISE-NTLIVIDEAYYEYVTAKD--FPETLPLLE 209
Query: 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---VSSQTQHL 317
+ I ++ + SK G FRVG + + + K++ L VSS Q
Sbjct: 210 K-----HKNILVLRTFSKAYGLASFRVGYAVGHEELI----EKLNVVRLPFNVSSLAQKA 260
Query: 318 IATMLSDDQFVEKFI 332
DD+F+E+ +
Sbjct: 261 ATIAFGDDEFIEEIV 275
|
Length = 366 |
| >gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 58/254 (22%), Positives = 88/254 (34%), Gaps = 58/254 (22%)
Query: 76 CSAEGLNEFKGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG----- 127
AE L K +Y G +A+AK + + G IT I ++ G
Sbjct: 53 LLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNIT--AQNIALTNGSQSAF 110
Query: 128 -----------ATGAHETVAFCLADP----GDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172
+ G + + LA DA L D + + ++L+P
Sbjct: 111 FYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEE-------DLFVSAKPNIELLP-- 161
Query: 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232
+ V E L + ++ P+NP G L E L + + +
Sbjct: 162 -AGQFKYHVDFEHLHIGES--------TGAICVSRPTNPTGNVLTDEELAKLDALARQHG 212
Query: 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC--NRNLIHIVYSLSKDMGFPGFRVGII 290
I L+ D Y V II D N N+I SLSK +G PG R GII
Sbjct: 213 IPLIIDNAYG----------VPFPGIIFSDATPLWNENIIL-CMSLSK-LGLPGSRCGII 260
Query: 291 YSYNDQVVSCARKM 304
+ N++V+ M
Sbjct: 261 IA-NEKVIQAITNM 273
|
Length = 417 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 72/303 (23%), Positives = 111/303 (36%), Gaps = 50/303 (16%)
Query: 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGA-HETV-AFCLADPGDAFLVPTPYY 153
E + + G D ++ G++ + V AF P + P Y
Sbjct: 76 DLELEDDLRTLFAAQEG----LPADHVMAYAGSSEPLNYAVLAFT--SPTAGLVTADPTY 129
Query: 154 PGFDRDLRWRTG-VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL-ITNPSNP 211
R + V VP+ D ++D K A+ AA A G++ I NP+NP
Sbjct: 130 EAGWRAADAQGAPVAKVPLRADGAHDVK----AMLAADPNA--------GLIYICNPNNP 177
Query: 212 LGTFLDRETLKDIVSFINEKNIH--LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269
GT DI + K L+ DE Y F+ S V + A ++L
Sbjct: 178 TGTV---TPRADIEWLLANKPAGSVLLVDEAYIH--FSDAPSVVDLV-------AQRKDL 225
Query: 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL-VSSQTQHLIATM-LSDDQF 327
I ++ + SK G G R+G+ + D + K++ FG L D +
Sbjct: 226 I-VLRTFSKLYGMAGMRLGLAAARPDLL----AKLARFGHNPLPVPAAAAGLASLRDPKL 280
Query: 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWR 387
V + AE+A A R W L + G C S A F+ +D+ + MA
Sbjct: 281 VPQRRAENA---AVREDTIAW-LKKKGYKCTPSQANCFM-VDVKR--PAKAVADAMAKQG 333
Query: 388 VII 390
V I
Sbjct: 334 VFI 336
|
Length = 370 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 19/186 (10%)
Query: 118 DPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSN 177
I+ G T + V L P A +V TP + + R L+ G ++ ++
Sbjct: 71 PASWILAGNGETESIFAVVSGL-KPRRAMIV-TPGFAEYRRALQQ-VGCEIRRYSLREAD 127
Query: 178 DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVC 237
+++T LEA + + + P+NP G +R+ L+ I NI L+
Sbjct: 128 GWQLTDAILEAL-------TPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALIL 180
Query: 238 DEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV 297
DE + E+ F+ +A N +L ++ SL+K PG R+G + + +D
Sbjct: 181 DEAF-IDFIPDETGFIPQ-------LADNPHL-WVLRSLTKFYAIPGLRLGYLVNSDDAA 231
Query: 298 VSCARK 303
V+ R+
Sbjct: 232 VARMRR 237
|
Length = 356 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 7e-05
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 114 RITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRT----GVQLV 169
R DRI++ G+ + + PGD V T YP F + T V+ V
Sbjct: 83 RTGVPADRIILGNGSEDLIAVICRAVLRPGD--RVVT-LYPSFPLHEDYPTMMGARVERV 139
Query: 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN 229
V + D ++AL AA +A + ++ +NPSNP+G++L + L ++
Sbjct: 140 TV----TPDLGFDLDALCAAVARAP------RMLMFSNPSNPVGSWLTADQLARVLDATP 189
Query: 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY-SLSKDMGFPGFRVG 288
+ + +V DE YA + + S ++ R L IV + SK G G RVG
Sbjct: 190 PETL-IVVDEAYAE--YAAGDDYPSALTLL-----KARGLPWIVLRTFSKAYGLAGLRVG 241
|
Length = 371 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 36/195 (18%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD 157
+ R+A+A G P+ I++ G G + +PGD + YP F+
Sbjct: 71 DLRHALAAHHG--------VAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFN 122
Query: 158 RDLRWRTGV-QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL 216
+ G VP +D E L+A + A+ N + V + NP NP+G++
Sbjct: 123 YHVAGFGGRLVTVPYR----DDR----EDLDALLDAARRENAPL--VYLANPDNPMGSWH 172
Query: 217 DRETLKDIVSFIN---EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
DIV+FI E + LV DE Y T + I + N+I +
Sbjct: 173 PAA---DIVAFIEALPETTL-LVLDEAYCET--APAGAAPPID-------TDDPNVIRM- 218
Query: 274 YSLSKDMGFPGFRVG 288
+ SK G G RVG
Sbjct: 219 RTFSKAYGLAGARVG 233
|
Length = 369 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 33/175 (18%)
Query: 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKV 181
IV++ G T A + LA ++P Y ++R + +++ ND
Sbjct: 57 IVITAGITEALYLIGI-LALRDRKVIIPRHTYGEYER-VARFFAARIIK----GPNDP-- 108
Query: 182 TMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
E LE E+ V+ NP+NP G F + + LK ++ + ++N L+ DE
Sbjct: 109 --EKLEELVER--------NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEA 158
Query: 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND 295
+ FV E + + N+I + + +K G PG RVG + + +
Sbjct: 159 FI--------DFVKKPESPEGE-----NII-KLRTFTKSYGLPGIRVGYVKGFEE 199
|
Length = 311 |
| >gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 165 GVQLVPVVCDSSNDFKVTMEALEAAY-EKAQESNIRIKGVLITNPSN-PLGTFLDRETLK 222
G Q VP+ + K+ +E LEAA + + N N G + E L+
Sbjct: 95 GAQPVPL--PGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELR 152
Query: 223 DIVSFINEKNIHLVCD--EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY-SLSKD 279
+I + E I L D + A V V + EI V SLSK
Sbjct: 153 EIRAIAREHGIPLHLDGARLANAAVALG----VIVKEITS--------YADSVSMSLSKG 200
Query: 280 MGFPGFRVGIIYSYNDQVVSCARK 303
+G P VG + + +D ++ AR+
Sbjct: 201 LGAP---VGSVLAGSDDFIAYARR 221
|
Length = 288 |
| >gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 20/119 (16%)
Query: 134 TVAFCLADPGDAFLVPTPYYPG----FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189
T L GD L+P Y G F++ L+ + GV++ V D +D EA
Sbjct: 93 TALLALLKAGDHVLLPDDLYGGTYRLFEKILQ-KFGVEVTFV--DPGDD--------EAL 141
Query: 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
+E N ++ V + PSNPL D + I +V D +A V +
Sbjct: 142 EAAIKEPNTKL--VFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR 195
|
Length = 396 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 31/211 (14%)
Query: 95 GLPEFRNAVAKFMGK----VRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT 150
G+PE R+ + M + + G +++ +++ T VA D GD L+P
Sbjct: 45 GIPELRDLWQEKMLRENPSLSGKKMS----LPIVTNALTHGLSLVADLFVDQGDTVLLPD 100
Query: 151 PYYPGFDRDLRWRTGVQLVPV-VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-P 208
+ + R G ++V + D F +AL+ A + A K ++I N P
Sbjct: 101 HNWGNYKLTFNTRRGAEIVTYPIFDEDGGF--DTDALKEALQAAYNKG---KVIVILNFP 155
Query: 209 SNPLGTFLDRETLKDIVSFINE-----KNIHLVCDEIYAATVF---TKESSFVSIAEIID 260
+NP G + IV I E + V D+ Y + KES F ++A +
Sbjct: 156 NNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANL-- 213
Query: 261 QDIACNRNLIHI-VYSLSKDMGFPGFRVGII 290
+ N++ + + +K+ GFRVG I
Sbjct: 214 -----HSNILAVKLDGATKEEFVWGFRVGFI 239
|
Length = 388 |
| >gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 36/187 (19%), Positives = 63/187 (33%), Gaps = 28/187 (14%)
Query: 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVS 226
+ D K+T E +EAA + ++ N + GT + L+ I +
Sbjct: 98 GGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISA 157
Query: 227 FINEKNIHLVCD--EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY-SLSKDMGFP 283
E + L D + A V + V++ I ++ + V L+K G P
Sbjct: 158 VCKEHGLPLHMDGARLANALV----ALGVALKTI--------KSYVDSVSFCLTKGGGAP 205
Query: 284 GFRVGIIYSYNDQVVSCARK--------MSSFGLVSSQTQHLIATMLSDDQFVEKFIAES 335
VG I N AR+ M +++Q + + +
Sbjct: 206 ---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWRLA--ADHANAM 260
Query: 336 AKRIAER 342
A R+AE
Sbjct: 261 AARLAEG 267
|
Length = 342 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256
N + I +P NPLG + R++L I +K L DE A F A
Sbjct: 120 NYNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDE--AFIDFVPNR-----A 172
Query: 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303
E N+I I SL+K +G P R+G I + +D + +RK
Sbjct: 173 EEDVLLNRSYGNVI-IGRSLTKILGIPSLRIGYIAT-DDYNMKISRK 217
|
Length = 332 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 66/273 (24%), Positives = 110/273 (40%), Gaps = 74/273 (27%)
Query: 38 PYHPTKNPNGVI-QMGLA--------ENLL-CHELVEDWLMNNPKASICSAEGLNEFKGI 87
Y P K+ V + GL EN V++ + + L+E +
Sbjct: 12 AYQPGKSIEEVKREYGLEKIVKLASNENPYGPSPKVKEAIAAH----------LDE---L 58
Query: 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFL 147
A++ D PE R VAK +G D ++++ G + ++ L +PG +
Sbjct: 59 ALYPD-GYAPELRTKVAKHLG--------VDEEQLLFGAGLDEVIQMISRALLNPGTNTV 109
Query: 148 VPTPYYPGFDRDLRWRTG-------VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200
+ P + ++R V+ VP+ D +D LEA + E +I
Sbjct: 110 MAEPTFS------QYRHNAIIEGAEVREVPLK-DGGHD-------LEAMLKAIDE-QTKI 154
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEI 258
V I NP+NP GT+++ E L +SF+ ++ +V DE Y E +V+ AE
Sbjct: 155 --VWICNPNNPTGTYVNHEEL---LSFLESVPSHVLVVLDEAY------YE--YVT-AED 200
Query: 259 IDQDIACNR---NLIHIVYSLSKDMGFPGFRVG 288
+ NLI ++ + SK G RVG
Sbjct: 201 YPDTLPLLEKYENLI-VLRTFSKAYGLAALRVG 232
|
Length = 359 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 72/287 (25%), Positives = 123/287 (42%), Gaps = 59/287 (20%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC------LADPGDAFLVP-- 149
E R A+A+ +G P+ + A G +VA C A PGD +
Sbjct: 61 ELRAALAEHLG--------VPPEHV-----AVGCG-SVALCQQLVQATAGPGDEVIFAWR 106
Query: 150 -TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
YP + + T VQ VP+ D ++D ++A+ AA R + + + NP
Sbjct: 107 SFEAYPILVQ-VAGATPVQ-VPLTPDHTHD----LDAMAAAITD------RTRLIFVCNP 154
Query: 209 SNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACN 266
+NP GT + L F++ ++ +V DE Y V + + + D
Sbjct: 155 NNPTGTVVTPAEL---ARFLDAVPADVLVVLDEAYVEYV-RDDDVPDGLELVRDHP---- 206
Query: 267 RNLIHIVYSLSKDMGFPGFRVGIIYSYND-QVVSCARKMS-SFGLVSSQTQH-LIATMLS 323
N++ ++ + SK G G RVG Y+ +V++ RK++ F V+S Q IA++ +
Sbjct: 207 -NVV-VLRTFSKAYGLAGLRVG--YAVGHPEVIAALRKVAVPFS-VNSLAQAAAIASLAA 261
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
+D+ +E+ +AER + L G S A F+W+ L
Sbjct: 262 EDELLER----VDAVVAERDRVRA-ALRAAGWTVPPSQAN-FVWLPL 302
|
Length = 352 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 55/201 (27%), Positives = 78/201 (38%), Gaps = 48/201 (23%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETV--AFCLADPG-DAFLVPTPYY 153
PE NA + + G P++I+ S GA A E + AFC PG D+ P Y
Sbjct: 63 PELINAYSAYAG--------VAPEQILTSRGADEAIELLIRAFCE--PGQDSIACFGPTY 112
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNI-----RIKGVLITNP 208
G+ + S+ F V ++AL + + K V I NP
Sbjct: 113 -----------GMYAI-----SAETFNVGVKALPLTADYQLPLDYIEQLDGAKLVFICNP 156
Query: 209 SNPLGTFLDRETLKDIVSFINE-KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNR 267
+NP GT +DR DI I + +V DE Y F E S +
Sbjct: 157 NNPTGTVIDR---ADIEQLIEMTPDAIVVVDEAYIE--FCPEYSVADLLASYP------- 204
Query: 268 NLIHIVYSLSKDMGFPGFRVG 288
NL+ ++ +LSK G R G
Sbjct: 205 NLV-VLRTLSKAFALAGARCG 224
|
Length = 354 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 100 RNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVPT------ 150
R VA+F+ PD I+ + T A VA+ L PGD +
Sbjct: 49 REKVARFINAP-------SPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSN 101
Query: 151 --PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
P+ + L RTG +L V D +D ++ +EALE + R K V +T+
Sbjct: 102 IVPW-----QQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTE------RTKLVAVTHV 148
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCD 238
SN LGT +K+I +E + ++ D
Sbjct: 149 SNVLGTINP---VKEIGEIAHEAGVPVLVD 175
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 21/172 (12%)
Query: 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDF 179
D+ V TGA+E L PGD +V + G + VPV +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPV--PVDDAG 75
Query: 180 KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239
++ KA+ + ++IT + G L LK+I E I L+ D
Sbjct: 76 YGGLDVAILEELKAKP---NVALIVITPNTT-SGGVLVP--LKEIRKIAKEYGILLLVDA 129
Query: 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIY 291
A ++ + + +SL K++G G G++
Sbjct: 130 ASA-------GGASPAPGVLIPEGGA----DVVTFSLHKNLG--GEGGGVVI 168
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PLN02721 | 353 | threonine aldolase | 99.97 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.97 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.97 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.95 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.95 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.95 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.95 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.95 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.95 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.94 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.94 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.94 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.94 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.94 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.94 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.93 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.92 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.92 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.92 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.92 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.92 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.92 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.92 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.91 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.91 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.91 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.91 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.91 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.91 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.9 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.9 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.9 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.9 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.9 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.9 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.9 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.9 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.9 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.9 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.89 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.89 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.89 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.89 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.89 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.88 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.88 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.88 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.88 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.88 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.88 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.88 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.87 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.87 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.87 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.87 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.87 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.87 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.86 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.86 | |
| PLN02651 | 364 | cysteine desulfurase | 99.86 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.85 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.85 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.84 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.84 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.83 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.83 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.83 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.83 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.82 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.82 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.82 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.81 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.8 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.8 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.8 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.8 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.8 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.8 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.79 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.79 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.79 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.78 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.78 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.77 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.77 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.76 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.76 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.75 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.75 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.74 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.74 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.73 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.73 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.72 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.72 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.72 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.72 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.72 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.71 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.71 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.7 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.7 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.69 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.69 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.69 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.68 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.68 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.68 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.67 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.67 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.67 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.66 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.66 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.65 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.65 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.65 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.64 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.64 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.63 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.63 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.63 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.63 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.63 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.63 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.63 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.63 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.63 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.6 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.59 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.57 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.57 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.56 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.56 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.56 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.56 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.55 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.55 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.55 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.54 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.54 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.53 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.52 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.52 | |
| PLN02263 | 470 | serine decarboxylase | 99.51 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.51 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.51 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.5 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.5 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.5 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.5 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.5 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.5 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.49 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.49 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.49 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.49 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.49 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.49 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.48 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.48 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.48 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.48 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.48 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.47 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.47 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.47 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.47 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.45 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.45 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.45 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.45 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.44 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.42 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.41 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.41 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.33 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.32 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.31 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.3 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.29 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.29 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.28 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.27 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.23 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.23 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.21 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.2 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.19 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.17 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.12 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.12 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.06 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.04 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.02 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.97 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 98.94 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 98.9 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.88 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.8 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.7 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.6 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.58 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.57 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.56 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 98.56 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.55 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.5 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 98.48 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 98.3 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.25 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 97.94 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.84 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.62 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.31 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.25 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.9 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 96.44 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 92.32 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 86.79 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 84.4 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 82.89 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 82.38 |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-74 Score=596.11 Aligned_cols=479 Identities=62% Similarity=1.122 Sum_probs=410.9
Q ss_pred CccccccchhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccc
Q 011570 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEG 80 (483)
Q Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 80 (483)
|.+.--++..++++++.+.++|..++||.+|..|..++|++..||.++|+|+++||+++.+.+.+++.+.+...++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~ 80 (496)
T PLN02376 1 MGLPAKNKGAILSKIATNDQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEG 80 (496)
T ss_pred CCccccchhhhhhhhhcccccCCCCchHHHHHHHhCCCCCcccCCCceEEeecchhhhhHHHHHHHHHhCchhhcccccc
Confidence 44443344789999999999999999999999999999999999999999999999999999999999887765565566
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH
Q 011570 81 LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 81 ~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~ 160 (483)
+..+.+...|+++.|.++||++||+|+++.+|..+++++++|++|+|+++++..++.+|++|||.|++++|+|+.|...+
T Consensus 81 ~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~ 160 (496)
T PLN02376 81 IHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDL 160 (496)
T ss_pred ccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHH
Confidence 66677788899999999999999999998877556789999999999999999999999999999999999999999887
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
....|+++++++++.+++|.+|++.++++++...+.+.++|+|++||||||||.+++.+++++|+++|++++++||+||+
T Consensus 161 ~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEi 240 (496)
T PLN02376 161 RWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEI 240 (496)
T ss_pred HhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 74349999999998667899999999988765544455899999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhcc--ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDI--ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLI 318 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~ 318 (483)
|.++.|.+ .++.++.++..... +.+.+++++++||||.||+||+|+||++++++.+.+.......++.+++++|.++
T Consensus 241 Y~~~~f~~-~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~ 319 (496)
T PLN02376 241 YAATVFAG-GDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLML 319 (496)
T ss_pred ccccccCC-CCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 99988887 66778777643110 0012467889999999999999999999977888777777777777899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhc-cChHHHHHHHHHHHHhcCeEe
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE-QTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~-~~~~~~~~~~~~Ll~~~gV~v 397 (483)
+.++.++.++++++++.++.++++++.+.+.|++.|+++.+++||+|+|++++..... ..+..+.++++.+++++||.|
T Consensus 320 ~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v 399 (496)
T PLN02376 320 ASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACLTSNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNV 399 (496)
T ss_pred HHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEE
Confidence 9999998887889999999999999999999999999999999999999999865433 334455689999998889999
Q ss_pred eCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhccC------------ccchhhcc-ccccceeccccccc
Q 011570 398 SPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEAKV------------PNKKKLCW-QRSLRLSMSSRRMD 464 (483)
Q Consensus 398 ~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~~ 464 (483)
.||+.|+...++|+||+|+..+++.+++++++|++++.+.++... ..+++.+| ++.|||+. .|+.+
T Consensus 400 ~pGs~F~~~~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 478 (496)
T PLN02376 400 SPGSSFRCTEPGWFRICFANMDDDTLHVALGRIQDFVSKNKNKIVEKASENDQVIQNKNAKKLKWRQSNLRLSF-RRLYE 478 (496)
T ss_pred eCccccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhcchhhhhccceeecc-chhhh
Confidence 999999877789999999966889999999999999987664422 22345668 45588877 46678
Q ss_pred ccccCCC-CCCCCccccc
Q 011570 465 DFMASPC-MSPQSPLVQA 481 (483)
Q Consensus 465 ~~~~~~~-~~~~~~~~~~ 481 (483)
++|-||. |+|+||||++
T Consensus 479 ~~~~~~~~~~~~~~~~~~ 496 (496)
T PLN02376 479 DGLSSPGIMSPHSPLLRA 496 (496)
T ss_pred ccccCCCCCCCCCcccCC
Confidence 9999985 6789999985
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-72 Score=527.16 Aligned_cols=427 Identities=60% Similarity=1.066 Sum_probs=407.2
Q ss_pred cchhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccc
Q 011570 7 NQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKG 86 (483)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (483)
..+..+++++...++|..++||.+|.+|..++|++.+||.|+|+|+.+||.++++++..|+.+.++...+..++.....+
T Consensus 34 ~~~~~lS~~~~~~~~~e~S~yf~g~~~y~~npy~~~~Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~ 113 (471)
T KOG0256|consen 34 ASNNLLSSKAVDDKHGEDSSYFYGWKAYEKNPYDPIKNPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDE 113 (471)
T ss_pred hhhhhcccccccccccccchHHHHHHhcccCCCCCCCCchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhh
Confidence 45678999999999999999999999999999999999999999999999999999999999988888888888888889
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
+..|+++.|.+.+|+++|+|+...+|..+..+|+++++|+|++.++..++..|++|||..++|.|.|+++...+++..|+
T Consensus 114 la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgv 193 (471)
T KOG0256|consen 114 LAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 193 (471)
T ss_pred HhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999998999
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
++++|.+...++|+++.++||+++.++++.+.++|.|+++||+||.|++++++++..++++|.++++++|+||+|+..+|
T Consensus 194 eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF 273 (471)
T KOG0256|consen 194 EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVF 273 (471)
T ss_pred eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChh
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~ 326 (483)
+. ..|.|+.++.... +...++|.+++|+||.||+||+|+|.++..++.+..+..++..++.+|++.|..++.+|.+..
T Consensus 274 ~~-~~F~Sv~ev~~~~-~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLSD~~ 351 (471)
T KOG0256|consen 274 DK-SEFRSVLEVRKDP-HLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLSDEE 351 (471)
T ss_pred Cc-cCceEHHHHhhcc-ccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhchHH
Confidence 98 8999999887632 114678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
+.+.|+.+...+++.+..++.+.|+++||++.+.++|+|+|+++.+.+...+++.+.+++++++.+.++.+.||+.|.+.
T Consensus 352 f~~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~ 431 (471)
T KOG0256|consen 352 FTREYLRENNKRLRIRHRYIVEGLKALGIPCLKSNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCH 431 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCceeecCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 407 NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 407 ~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.+||+|+||++..++.++-+++||+.++.
T Consensus 432 EpGWFRvcFAn~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 432 EPGWFRVCFANMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHHHH
Confidence 99999999998788888889999999988
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=539.24 Aligned_cols=441 Identities=59% Similarity=1.016 Sum_probs=384.1
Q ss_pred CccccccchhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccc
Q 011570 1 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEG 80 (483)
Q Consensus 1 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 80 (483)
|+-...|++..+++++++..++..++||..|..+..++|++..||.|+|+|+++||.++.+.+.+++.+.+...++....
T Consensus 2 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~ 81 (447)
T PLN02607 2 MAIEIAQPAVGLSKVAVSETHGEDSPYFAGWKAYDEDPYDESHNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKG 81 (447)
T ss_pred cchhhccchhhhhhhhhhcccCCCchHHHHHHHhcCCCCCcccCCCceEEEechhhhhhHHHHHHHHHhCchhhcccccc
Confidence 56677899999999999999999999999999999999999999999999999999999999999998876644332222
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH
Q 011570 81 LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 81 ~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~ 160 (483)
......+..|+++.|.++||+++|+|++++++...++++++|++|+|+++++.+++.++++|||.|+++.|+|+.|...+
T Consensus 82 ~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~ 161 (447)
T PLN02607 82 APGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDL 161 (447)
T ss_pred ccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHH
Confidence 22234556799999999999999999998877556789999999999999999999999999999999999999998888
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
....|+++++++++++++|.+|++.+++++.+..+.+.++|+|+++|||||||.++|++++++|+++|++++++||+||+
T Consensus 162 ~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 162 RWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred HhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecc
Confidence 75459999999998777899999999999988777788999999999999999999999999999999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhcccc-CCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIAC-NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIA 319 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~ 319 (483)
|++++|++ .++.|+.++...+... ..++|++++||||.||++|+|+||+++.++.+...+.....+..+++++|.+++
T Consensus 242 Ya~~~f~~-~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~ 320 (447)
T PLN02607 242 YSGSVFSA-SEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLA 320 (447)
T ss_pred ccccccCC-CCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 99988886 6678887764321100 147899999999999999999999999777777777666666668999999999
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
.+|.+.++.++++++.+++++++++.+.+.|++.|+++.++++|+|+|++++..........+.+++.++++++||.|.|
T Consensus 321 ~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~p 400 (447)
T PLN02607 321 SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECLKGNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISP 400 (447)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcC
Confidence 99999888788999999999999999999999999999999999999999986543222334557888899888999999
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhccC
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEAKV 442 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~~~ 442 (483)
|+.|+...++|+||+|+..+++.++++++||.+++++.++..-
T Consensus 401 G~~f~~~~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~~~~ 443 (447)
T PLN02607 401 GSSCHCSEPGWFRVCFANMSEDTLEVALKRIHRFMDRRKTASS 443 (447)
T ss_pred ccccCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999877889999999966899999999999999988776633
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=510.32 Aligned_cols=426 Identities=58% Similarity=1.048 Sum_probs=357.1
Q ss_pred hhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCC
Q 011570 12 LSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQ 91 (483)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 91 (483)
++.+++..-++...+||..+..+..++|++..||.++|+|+++||+++.+.+.+++...+....+..........+..|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~ 83 (468)
T PLN02450 4 LSRKATCNSHGQDSSYFLGWEEYEKNPYDEIKNPSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQ 83 (468)
T ss_pred cchhhcccccCCCCchHHHHHHHhcCCCCcccCCCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCC
Confidence 34455555566777899999999999999999999999999999999999998988765332111001111123456799
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
++.|.++||++||+|+++.++..+++++++|++|+|+++++..++.++++|||.|++++|+|+.|...+....|++++++
T Consensus 84 ~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v 163 (468)
T PLN02450 84 DYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPI 163 (468)
T ss_pred CCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEE
Confidence 99999999999999999887765668999999999999999999999999999999999999999888774349999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+++++++|.+|++.+++++.+..+.+.++|+|++||||||||.++|.+++++|+++|++++++||+||+|.++.|.+ .+
T Consensus 164 ~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~-~~ 242 (468)
T PLN02450 164 HCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS-PG 242 (468)
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCC-CC
Confidence 99866789999999999998765556689999999999999999999999999999999999999999999988876 55
Q ss_pred cchHHHhhhhc---cccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQD---IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~---~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (483)
+.++.++.... +....++|++++||||.||++|+|+||++++++.+.+.+.+...++.+++++|.+++.+|.++.+.
T Consensus 243 ~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~ 322 (468)
T PLN02450 243 FVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLSDKKFT 322 (468)
T ss_pred cccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCchhH
Confidence 66665543210 000247899999999999999999999999777666666666656668999999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
++++++.++.++++++.+.+.|+++|+++.+++||+|+|++++...+...+..+.+++..+++++||.|.||+.|+...+
T Consensus 323 ~~~l~~~~~~l~~rr~~l~~~L~~~gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~ 402 (468)
T PLN02450 323 KNYLEENQKRLKQRQKKLVSGLEAAGIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEP 402 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCC
Confidence 66888899999999999999999999999999999999999986554444445567889999889999999999987678
Q ss_pred CEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 409 GWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 409 ~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+|+||+|+..+++++++++++|++++++..
T Consensus 403 g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 403 GWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 999999996688999999999999987654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=470.13 Aligned_cols=357 Identities=28% Similarity=0.514 Sum_probs=308.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc-EE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-IV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~-i~ 123 (483)
.++|+|+++++.++ ++.+.+++.+.... ... .|.+..|.++||++||+++.+.+| +.+++++ |+
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~-----------~~~-~Y~~~~G~~~LReaia~~~~~~~~--~~~~~~~eii 93 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEE-----------GGT-HYTPSAGIPELREAIAEKYKRRYG--LDVDPEEEII 93 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhc-----------ccC-CCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 57899999999876 55566555442110 011 677999999999999999999988 6678876 99
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.++++|||+|++++|.|+.|...+... |++++.++++.+ .+|.+|++.+++++.+ ++|+
T Consensus 94 vt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~-gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~ 166 (393)
T COG0436 94 VTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLA-GGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKA 166 (393)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceE
Confidence 9999999999999999999999999999999999999986 999999998655 4899999999999975 8999
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++++++++|+++|++||++||+||+|.++.|++ ..+.|+.++.. ..+++|+++||||.|+|
T Consensus 167 i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~-~~~~s~~~~~~-----~~~~~i~i~s~SK~~~m 240 (393)
T COG0436 167 IILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDG-AEHPSILELAG-----ARDRTITINSFSKTYGM 240 (393)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC-CCcCCHhhcCC-----CcceEEEEecccccccc
Confidence 9999999999999999999999999999999999999999999987 56678887754 35889999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK 359 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~ 359 (483)
+|||+||++++++.+.+.+.+.... ...+.++|.++..+|+..+. ....+..++.+++||+.+.+.|.+. |+.+..
T Consensus 241 tGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~ 319 (393)
T COG0436 241 TGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVK 319 (393)
T ss_pred cccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeecc
Confidence 9999999999657777776654433 45788999999999998743 4456777789999999999999988 599888
Q ss_pred -CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 360 -SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 360 -~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|+|+||+|++++... ++.+|+.+|++++||.|.||+.|+.. +.++|||+++ .+++++++++++|+++++..
T Consensus 320 ~p~Ga~Y~~~~i~~~~------d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~-~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 320 PPEGAFYLFPKIPELL------DSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLA-TSEETLEEALRRLARFLAEY 392 (393)
T ss_pred CCCeeEEEEeecCCCC------CHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEe-cCHHHHHHHHHHHHHHHHhc
Confidence 889999999999752 24589999999999999999999985 7899999998 46699999999999988764
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-54 Score=434.23 Aligned_cols=354 Identities=21% Similarity=0.356 Sum_probs=287.4
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i 122 (483)
+.++|+|+.++++++ ++.+.+.+.+.... .....|+++.|.++||++||+|+.+.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHD-----------PSTHGYLLFHGTLDFREAAAQWYEQRFG--LAVDPETEV 95 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------cccCCCCCCCCCHHHHHHHHHHHHHhhC--CcCCCcCeE
Confidence 456799999999876 45555555431100 1235799889999999999999988777 567898 69
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++.+++.+++++||.|++++|+|+.|...++.. |+++++++++++++|.+|++++++.+.. ++|+
T Consensus 96 ~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 168 (388)
T PRK07366 96 LPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLA-GGQIYPMPLRAENDFLPVFADIPTEVLA------QARL 168 (388)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEECCCccCCCCCHHHHHHhhcc------cceE
Confidence 99999999999999999999999999999999999998886 9999999998777889999999877643 6899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC-cchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS-FVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~-~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++ .. ..++.++.. ..+++|+++||||+||
T Consensus 169 i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~-----~~~~vi~~~SfSK~~g 242 (388)
T PRK07366 169 MVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDG-EVEPPSILQADP-----EKSVSIEFFTLSKSYN 242 (388)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCC-CCCCCChhhCCC-----CcccEEEEeecccccC
Confidence 9999999999999999999999999999999999999999988765 32 455665533 3457899999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhcCCC---ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSFGLV---SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~ 358 (483)
+||+|+||+++ ++.+.+.+......... +.+.|.+++.+..+ ++++++.++.++++++.+.+.|+++|+.+.
T Consensus 243 ~~GlRiG~~v~-~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~----~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~ 317 (388)
T PRK07366 243 MGGFRIGFAIG-NAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP----QATVQQTVQIFRQRRDAFINALHQIGWPVP 317 (388)
T ss_pred CcchhheehcC-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 99999999998 56666666555443222 22344555554433 345788889999999999999998898888
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
.|++|+|+|++++..... +..+++..+++++||.|.||+.|+...++|+||+++ .+++++++++++|++++
T Consensus 318 ~p~~g~f~~~~~~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 318 LPEATMYVWAKLPEPWQG----NSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV-HDPDILEEAVERIAAFL 388 (388)
T ss_pred CCCeeEEEEEECCcccCC----CHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec-CCHHHHHHHHHHHHHhC
Confidence 899999999999864221 123678888888899999999997655689999998 48999999999998763
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-53 Score=429.96 Aligned_cols=350 Identities=19% Similarity=0.374 Sum_probs=291.8
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i 122 (483)
..++++|+.++++++ ++.+.+.+.+.... .....|+ ..|.++||++||+|+++.+| +++++ ++|
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-----------~~~~~y~-~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 96 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQ-----------KESYGYT-LSGIQEFHEAVTEYYNNTHN--VILNADKEV 96 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhc-----------cccCCCC-CCCcHHHHHHHHHHHHHHhC--CCCCCCCeE
Confidence 346799999998764 45555555431110 0123455 47999999999999998877 56788 899
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++++|++++++|.+|++.+++++.+ ++++
T Consensus 97 ~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 169 (399)
T PRK07681 97 LLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMA-GATSYYMPLKKENDFLPDLELIPEEIAD------KAKM 169 (399)
T ss_pred EECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999999998876 9999999998777899999999888753 7899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++ ..+.++.++.. ..+++|+++||||.||+
T Consensus 170 v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~~~ 243 (399)
T PRK07681 170 MILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG-NKPISFLSVPG-----AKEVGVEINSLSKSYSL 243 (399)
T ss_pred EEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC-CCCCChhhCCC-----CcccEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999987775 44456655532 34689999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+|+|+||+++ ++.+.+.+..... .+.++.+.|.++..++.+.. .++++.++.++++++.+.+.|++.|+++..|
T Consensus 244 ~GlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p 319 (399)
T PRK07681 244 AGSRIGYMIG-NEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCEKNRGIYQERRDTLVDGFRTFGWNVDKP 319 (399)
T ss_pred ccceeEEEec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 9999999998 5556666655442 34588899999999998753 4577778889999999999999999988888
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
.+|+|+|++++...+ ..+++..+++++||.|.||..|+..+++++||+++ .+++++++++++|++
T Consensus 320 ~~g~f~~~~l~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 320 AGSMFVWAEIPKGWT------SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV-QDEEVLQQAVENIRN 384 (399)
T ss_pred CeeeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec-CCHHHHHHHHHHHHH
Confidence 999999999985322 33788888887899999999997656789999998 578999999999987
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=423.95 Aligned_cols=364 Identities=19% Similarity=0.341 Sum_probs=292.8
Q ss_pred CCCcccccchhhhhc-H-HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-c
Q 011570 45 PNGVIQMGLAENLLC-H-ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-R 121 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~ 121 (483)
+.++++|+.+.+... + ..+......... .....|++..|.++||+++|+|+.+.+| +.++++ +
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~l~~~~~--~~~~~~~~ 97 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQK------------PKTHGYSVSKGIYKLRLAICNWYKRKYN--VDLDPETE 97 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcC------------CccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCe
Confidence 456789988865543 2 233333322110 1356899999999999999999988777 567887 7
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc-CCce
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES-NIRI 200 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~ 200 (483)
|++|+|+++++.+++.++++|||.|++++|+|+.+...++.. |+++++++++.+++|.+|++.+...+++...+ .+++
T Consensus 98 I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 176 (403)
T PRK08636 98 VVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILA-GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKP 176 (403)
T ss_pred EEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCc
Confidence 999999999999999999999999999999999999998886 99999999865557899988775555443222 3478
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++++++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++ ..+.++..+.. ..+++|+++||||.|
T Consensus 177 ~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~ 250 (403)
T PRK08636 177 KYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG-YKTPSILEVEG-----AKDVAVESYTLSKSY 250 (403)
T ss_pred eEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC-CCCCChhcCCC-----ccccEEEEEeccccc
Confidence 999999999999999999999999999999999999999999987765 44456665532 236788899999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~ 358 (483)
|+||+|+||+++ ++.+.+.+...... ..++++.|.++..++... ..++++.++.++++++.+.+.|++.|+.+.
T Consensus 251 ~~~GlRiG~iv~-~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 326 (403)
T PRK08636 251 NMAGWRVGFVVG-NKKLVGALKKIKSWLDYGMFTPIQVAATIALDGD---QSCVEEIRETYRKRRDVLIESFANAGWELQ 326 (403)
T ss_pred CCccceeeeeeC-CHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 999999999998 55566555554432 346778888887776532 456788889999999999999999898888
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|.+|+|+|++++...... .+.+++..+++++||.|.||..|+..+++|+||+++ .+++++++++++|+++++..
T Consensus 327 ~p~~g~~~~~~l~~~~~~~---~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 327 KPRASMFVWAKIPEPARHL---GSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI-ENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred CCCcceEEEEECCCccCCC---CHHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-CCHHHHHHHHHHHHHHHHhh
Confidence 8999999999998643211 134788888888899999999998666789999998 69999999999999999764
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-52 Score=430.40 Aligned_cols=348 Identities=23% Similarity=0.378 Sum_probs=282.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhhcC
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
...|+++.|.++||++||+|+.+.+| +++++++|++|+|+++++..++++++ +|||.|+++.|+|+.|...++.. |
T Consensus 108 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~-g 184 (481)
T PTZ00377 108 TGAYTDSAGYPFVRKAVAAFIERRDG--VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLL-G 184 (481)
T ss_pred ccCcCcccCCHHHHHHHHHHHHHhcC--CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHc-C
Confidence 46799999999999999999998777 66889999999999999999999998 79999999999999999999886 9
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
++++.++++++++|.+|++.|++++.+...++.++|+|+++|||||||.++|.+++++|+++|++||++||+||+|.++.
T Consensus 185 ~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 185 GKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 99999999877789999999999997654444578999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchHHHhhhhccccC---CCeEEEEecCccc-cCCCCceEEEEEe--cChHHHHHHHHhhh-cCCCChHHHHHH
Q 011570 246 FTKESSFVSIAEIIDQDIACN---RNLIHIVYSLSKD-MGFPGFRVGIIYS--YNDQVVSCARKMSS-FGLVSSQTQHLI 318 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~---~~~vi~~~S~SK~-~g~~GlRiG~li~--~~~~l~~~~~~~~~-~~~~s~~~q~~~ 318 (483)
|+++.++.++..+..++.. . ..++|+++||||. ++++|||+||+++ .++.+.+.+.+... .+.+++++|.++
T Consensus 265 ~~~~~~~~s~~~~~~~l~~-~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~~~~~~~~~~~Q~a~ 343 (481)
T PTZ00377 265 YDGEKPFISFRKVLLELPA-EYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMT 343 (481)
T ss_pred cCCCCCcccHHHHHHhhcc-cccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHhheecCCChHHHHHH
Confidence 8542455666554322210 1 1379999999998 6999999999997 25666666555443 345788999999
Q ss_pred HHhcCCh----hH---HHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecC--chhhc----cChHHHHH
Q 011570 319 ATMLSDD----QF---VEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH--HLLKE----QTYEAEMA 384 (483)
Q Consensus 319 ~~~l~~~----~~---~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~--~~~~~----~~~~~~~~ 384 (483)
..++.+. .. ..++.++.+..++++++.+.+.|+++ |+.+..|+||||+|++++ ..... .....+..
T Consensus 344 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~ 423 (481)
T PTZ00377 344 GLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPDVL 423 (481)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCchhhHHHHHhcCCCcHHH
Confidence 9998641 11 12334444556899999999999988 899999999999998764 21110 00112335
Q ss_pred HHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 385 LWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
++..+++++||.|.||+.|+.. +++++|||++ .+++++++++++|++++++..+
T Consensus 424 ~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~-~~~e~l~~~l~rl~~~~~~~~~ 478 (481)
T PTZ00377 424 YCLELLESTGIVVVPGSGFGQKPGTYHFRITIL-PPEEQIEEMVKKIKEFHESFMK 478 (481)
T ss_pred HHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899999999999753 4569999998 7889999999999999987643
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=424.15 Aligned_cols=358 Identities=17% Similarity=0.317 Sum_probs=289.3
Q ss_pred CCCCcccccchhhh-h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-C
Q 011570 44 NPNGVIQMGLAENL-L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-D 120 (483)
Q Consensus 44 ~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~ 120 (483)
-+.+.++|+.+++. . +++.+.+.+.+.... .....|+++.|.++||++||+++.+.+| +++++ +
T Consensus 37 ~~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~LR~aia~~l~~~~g--~~~~~~~ 103 (405)
T PRK06207 37 LPGRPVDFSHGDVDAHEPTPGAFELFSAGVER-----------GGVQAYTEYRGDADIRELLAARLAAFTG--APVDAAD 103 (405)
T ss_pred CCCCceecCCcCCCCCCCCHHHHHHHHHHHhc-----------CCCccCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCC
Confidence 35677899987654 2 334444433321000 1235799999999999999999998877 55788 8
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC---CCCCcccCHHHHHHHHHHHHhcC
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD---SSNDFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~---~~~~~~~d~~~l~~~i~~~~~~~ 197 (483)
+|++|+|+++++..++.+++++||+|++++|+|+.+...++.. |+++++++++ .+.+|.+|++.|++++.+
T Consensus 104 ~I~it~Ga~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~----- 177 (405)
T PRK06207 104 ELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYLSADKRAGLDLDQLEEAFKA----- 177 (405)
T ss_pred CEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeccccCcccCCCcCHHHHHHhhhh-----
Confidence 9999999999999999999999999999999999999988876 9999999986 234688999999998864
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..+.++..+.. ..+++|+++|||
T Consensus 178 -~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~-----~~~~vi~i~SfS 250 (405)
T PRK06207 178 -GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG-TSYTHLRALPI-----DPENVITIMGPS 250 (405)
T ss_pred -cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCCchhcCCC-----CcCcEEEEecch
Confidence 68899999999999999999999999999999999999999999988876 44455544422 358999999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDD-QFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
|+||+||+|+||+++ ++.+.+.+...... ...+.++|.++..++.++ .+ +++..+.++++++.+.+.|+++
T Consensus 251 K~~~lpGlRiG~ii~-~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~----~~~~~~~~~~~r~~l~~~L~~~~ 325 (405)
T PRK06207 251 KTESLSGYRLGVAFG-SPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGW----MKDRIARHQAIRDDLLRVLRGVE 325 (405)
T ss_pred hhccCcccceEEEEc-CHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998 45566665554433 345778999999999764 33 4445556677888999999887
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+++.+|+||+|+|++++... .+..+++..+++++||.|.||+.|+...++++||+++. +++++++++++|+++
T Consensus 326 ~~~~~~p~gg~fl~~~l~~~~-----~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~~-~~~~l~~al~rl~~~ 399 (405)
T PRK06207 326 GVFVRAPQAGSYLFPRLPRLA-----VSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFSQ-DHAAAVAAAERIAQL 399 (405)
T ss_pred CceecCCCeeEEEEEeCcccC-----CCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEecC-CHHHHHHHHHHHHHH
Confidence 888888999999999998521 01336888888778999999999976667899999984 889999999999999
Q ss_pred HHHhh
Q 011570 434 MLKNV 438 (483)
Q Consensus 434 l~~~~ 438 (483)
+++.+
T Consensus 400 l~~~~ 404 (405)
T PRK06207 400 IERYR 404 (405)
T ss_pred HHHhh
Confidence 87653
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=425.46 Aligned_cols=364 Identities=20% Similarity=0.302 Sum_probs=290.6
Q ss_pred CCcccccchhh---hh-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc
Q 011570 46 NGVIQMGLAEN---LL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR 121 (483)
Q Consensus 46 ~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~ 121 (483)
.++++++++++ .+ +++.+.+.+.+.... ....+|++..|.++||+++|+|+.+.+| +.+++++
T Consensus 32 ~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~ 98 (433)
T PRK06855 32 VKITWENIGDPIAKGEKIPDWMKEIVAELVMD-----------DKSYGYCPTKGVLETREFLAELNNKRGG--AQITPDD 98 (433)
T ss_pred ccccccccCCCcccCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhccC--CCCCHhH
Confidence 46788888876 23 345555555432110 1346799999999999999999998776 5688999
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|++|+|+++++..++. +++|||.|++++|+|+.|........|+++++++++++++|.+|+++|++++.+ +++++
T Consensus 99 I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~~ 173 (433)
T PRK06855 99 IIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKY----NPSIA 173 (433)
T ss_pred EEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhc----CCCce
Confidence 9999999999999985 789999999999999987654333348899999988767899999999998863 13678
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
+++++|||||||.++|.+++++|+++|+++|++||+||+|.++.|.+ ..+.++.++.. ..++|+++||||.|+
T Consensus 174 ~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~-~~~~sl~~~~~------~~~~I~~~S~SK~~~ 246 (433)
T PRK06855 174 GILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG-KKTVPLSEVIG------DVPGIALKGISKELP 246 (433)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCCCHHHHcC------cCCeEEEecCccccC
Confidence 99999999999999999999999999999999999999999988876 55567776643 136799999999999
Q ss_pred CCCceEEEEEecC----hHHHHHHHHhh----hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 282 FPGFRVGIIYSYN----DQVVSCARKMS----SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 282 ~~GlRiG~li~~~----~~l~~~~~~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+||+|+||+++++ +.+...+.... ....+++++|.+++.++.++.+ ++++++.++.++++++.+.+.|++.
T Consensus 247 ~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L~~~ 325 (433)
T PRK06855 247 WPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDV 325 (433)
T ss_pred CCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999842 22232222221 1234678999999999987654 6788999999999999999999887
Q ss_pred -CceeecCCceEEEeeecCchhhc------------cC---------hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEE
Q 011570 354 -GIGCLKSNAGLFLWMDLHHLLKE------------QT---------YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWF 411 (483)
Q Consensus 354 -gi~~~~~~~g~f~~~~l~~~~~~------------~~---------~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~i 411 (483)
|+.+.+|+||||+|+++++.... .. .....+++..+++++||.+.||+.|+.. ..++
T Consensus 326 ~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~~~~ 404 (433)
T PRK06855 326 PGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-LNGF 404 (433)
T ss_pred CCeeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-CCce
Confidence 88888999999999999864200 00 0013477888888999999999999743 3459
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 412 RVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 412 Ris~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
||+++..+++++++++++|++++++
T Consensus 405 Rls~~~~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 405 RVTLLERDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred EEEECCCcHHHHHHHHHHHHHHHHH
Confidence 9999877899999999999999875
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=422.71 Aligned_cols=351 Identities=23% Similarity=0.385 Sum_probs=286.0
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|+|+.+.+..+ ++.+.+.+.+.... .....|++..|.++||+++|+|+.+.+| .+++++ +|+
T Consensus 32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~~g--~~~~~~~~i~ 98 (389)
T PRK08068 32 HDVINLGQGNPDQPTPEHIVEALQEAAEN-----------PANHKYSPFRGYPFLKEAAADFYKREYG--VTLDPETEVA 98 (389)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 46799999976654 34455554431110 1246798889999999999999987776 557888 899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.+|++++.+|.+|++++++.+.+ ++++|
T Consensus 99 it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~------~~~~v 171 (389)
T PRK08068 99 ILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALA-RAQFETMPLIAENNFLPDYTKIPEEVAE------KAKLM 171 (389)
T ss_pred EcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhc-CCEEEEeecccccCCCCCHHHHHHhccc------cceEE
Confidence 9999999999999999999999999999999999988876 9999999998766889999999988753 68999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.++|.+++++|+++|++++++||+||+|.++.|++ ..+.++..... ..+++++++||||.||+|
T Consensus 172 ~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~-~~~~s~~~~~~-----~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 172 YLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDG-QKPVSFLQTPG-----AKDVGIELYTLSKTFNMA 245 (389)
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCC-CCCcChhhCCC-----ccCCEEEEecchhccCCc
Confidence 999999999999999999999999999999999999999877764 33345444322 346889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcC--CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFG--LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+......+ +.+++.|.+++.++.++. +++++.++.++++++.+.+.|++.|+.+.+|.
T Consensus 246 GlRiG~~~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~r~~~~~~L~~~g~~~~~~~ 321 (389)
T PRK08068 246 GWRVAFAVG-NESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQ---SCVAELVARYESRRNAFISACREIGWEVDAPK 321 (389)
T ss_pred cceeEeEec-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 999999998 556666665544432 234557887777775432 45778888999999999999999999888999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
||+|+|++++...+ ..++++.+++++||.|+||..|+..+++++||+++ .+++.+.+++++|+++
T Consensus 322 g~~~~~v~~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 322 GSFFAWMPVPKGYT------SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL-TDEERLREAVERIGKL 386 (389)
T ss_pred eeEEEEEECCCCCC------HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc-CCHHHHHHHHHHHHHh
Confidence 99999999985322 34788888877899999999998666789999998 5778899999888753
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=426.30 Aligned_cols=397 Identities=21% Similarity=0.321 Sum_probs=312.5
Q ss_pred ccccccchhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhh---cHHHHHHHHhcCCCCccccc
Q 011570 2 AFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLL---CHELVEDWLMNNPKASICSA 78 (483)
Q Consensus 2 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~ 78 (483)
||..++.+|+|+++..+ +........++................++|+.+.++. +.....+.+......
T Consensus 48 ay~~L~~~G~i~~~~gs---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~----- 119 (459)
T COG1167 48 AYEELEARGYIESRPGS---APPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPDPSLFPLEALRRALARVLRN----- 119 (459)
T ss_pred HHHHHHhCcceeeccCC---CcccccccccchhhhhhcccccCCCceecCCCCCCCcccCCHHHHHHHHHHHHhh-----
Confidence 79999999999999444 3322222222211111000001124567888776433 333444443321100
Q ss_pred cccccccc-cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH
Q 011570 79 EGLNEFKG-IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD 157 (483)
Q Consensus 79 ~~~~~~~~-~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~ 157 (483)
.... ...|.++.|.++||++|++++....| +.+++++|++|+|+++++++++..+++|||+|++++|+|....
T Consensus 120 ----~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g--~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~PtY~~~~ 193 (459)
T COG1167 120 ----YGASLALQYGPTAGLPELREAIAAYLLARRG--ISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDPTYPGAL 193 (459)
T ss_pred ----cchhhhhcCCCCCCcHHHHHHHHHHHHHhcC--CccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHH
Confidence 0012 46788889999999999999996666 7789999999999999999999999999999999999999999
Q ss_pred HHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHHhhcCcEEE
Q 011570 158 RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFINEKNIHLV 236 (483)
Q Consensus 158 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI 236 (483)
..++.+ |.++++||+|++| +|++.|++.++++ ++|+++++ +-|||||.+||.+++++|+++|++||++||
T Consensus 194 ~~~~~~-g~~~~~vp~d~~G---~~~e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~II 264 (459)
T COG1167 194 QALEAL-GARVIPVPVDEDG---IDPEALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLII 264 (459)
T ss_pred HHHHHc-CCcEEecCCCCCC---CCHHHHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 999987 9999999999776 9999999999864 78877655 338999999999999999999999999999
Q ss_pred EccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHH
Q 011570 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQT 314 (483)
Q Consensus 237 ~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~ 314 (483)
+||+|+++.|+. .+..++..++ ..++||+++||||++. ||+|+||++++ +.+.+.+.... ....++.+.
T Consensus 265 EDD~y~el~~~~-~p~~~l~~ld------~~~rViy~gSFSK~l~-PglRlG~vv~p-~~~~~~~~~~k~~~~~~~s~~~ 335 (459)
T COG1167 265 EDDYYGELRYDG-PPPPPLKALD------APGRVIYLGSFSKTLA-PGLRLGYVVAP-PELIEKLLRLKQAADLGPSSLS 335 (459)
T ss_pred eeCcchhhhcCC-CCCCChHhhC------CCCCEEEEeeehhhcc-cccceeeeeCC-HHHHHHHHHHHHHhcCCCChHH
Confidence 999999998887 5555677664 3589999999999996 99999999995 45555443332 235588999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
|.+++..+.++. +++|+++.+..|+++++.+.+.|.+. ++++..|.||+|+|++++..++. ..+....++
T Consensus 336 Q~~la~~l~~G~-~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~------~~l~~~a~~ 408 (459)
T COG1167 336 QAALAAFLLSGH-YDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDA------RELLAAALE 408 (459)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCH------HHHHHHHHH
Confidence 999999999554 58999999999999999999999997 47888999999999999986543 356666664
Q ss_pred hcCeEeeC-CCCCCCCC--CCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 392 EVKLNVSP-GSSFHCPN--PGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 392 ~~gV~v~p-g~~f~~~~--~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+||.+.| |..|.... .+++||+|+..+++++++++++|.+++++..
T Consensus 409 -~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 409 -KGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred -CCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5999999 98887654 4589999998899999999999999998764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=425.01 Aligned_cols=349 Identities=23% Similarity=0.374 Sum_probs=281.6
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhhcC
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
...|+++.|.++||++||+|+.+.+| +++++++|++|+|+++++..++.+++ .+||.|+++.|+|+.|...+... |
T Consensus 161 ~~~Y~~s~G~~~lReaIA~~~~~r~g--~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~-g 237 (534)
T PLN02231 161 TGAYSHSQGIKGLRDAIAAGIEARDG--FPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALH-G 237 (534)
T ss_pred ccCcCCCCCcHHHHHHHHHHHHhccC--CCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHc-C
Confidence 56799999999999999999998776 66899999999999999999999998 48999999999999999999886 9
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
+++++++++++++|.+|+++|++++++...++.++|+|+++|||||||.+++.+++++|+++|+++|++||+||+|.+++
T Consensus 238 ~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~ 317 (534)
T PLN02231 238 GTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENV 317 (534)
T ss_pred CEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 99999999877789999999999998765555578999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchHHHhhhhcccc-CCCeEEEEecCcccc-CCCCceEEEEEec--ChHHHHHHHHhhhc-CCCChHHHHHHHH
Q 011570 246 FTKESSFVSIAEIIDQDIAC-NRNLIHIVYSLSKDM-GFPGFRVGIIYSY--NDQVVSCARKMSSF-GLVSSQTQHLIAT 320 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~-~~~~vi~~~S~SK~~-g~~GlRiG~li~~--~~~l~~~~~~~~~~-~~~s~~~q~~~~~ 320 (483)
|+++..+.++.++...++.. ...++|+++||||.+ |++|+|+||+++. ++.+.+.+.+.... ...+.+.|.++..
T Consensus 318 y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~ 397 (534)
T PLN02231 318 YVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASL 397 (534)
T ss_pred cCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 86324566776664321100 123689999999975 8999999999874 46666665554433 3345678888888
Q ss_pred hcCCh----hHHHHHH---HHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeec--Cch-hhcc---ChHHHHHHH
Q 011570 321 MLSDD----QFVEKFI---AESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDL--HHL-LKEQ---TYEAEMALW 386 (483)
Q Consensus 321 ~l~~~----~~~~~~~---~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l--~~~-~~~~---~~~~~~~~~ 386 (483)
++... ..++.+. +..++.++++++.+.+.|+++ |+.+.+|+||||+|+++ +.. .+.. ....+..++
T Consensus 398 ~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~ 477 (534)
T PLN02231 398 VMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYC 477 (534)
T ss_pred HhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHH
Confidence 88642 2234443 345788999999999999998 89999999999999655 321 1100 001133567
Q ss_pred HHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 387 RVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..|++++||.+.||+.|+.. +..++|++++ .++++++++++||++++++..+
T Consensus 478 ~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~-~~~e~l~eal~RL~~~~~~~~~ 530 (534)
T PLN02231 478 KRLLNATGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAIVSRLTEFHKSFMD 530 (534)
T ss_pred HHHHHhcCEEEeCCcccCCCCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 88998899999999999853 3457999996 6899999999999999888643
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=420.87 Aligned_cols=352 Identities=23% Similarity=0.415 Sum_probs=292.3
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|+|+.+.+.++ ++.+.+.+.+... ....+|++..|.++||+++++++.+.+| +.++++ +|+
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~Lr~aia~~~~~~~g--~~~~~~~~I~ 119 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIR------------DGKNQYARGFGVPELNSAIAERFKKDTG--LVVDPEKEVT 119 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 36899999988765 4555555543110 1235799999999999999999998777 567887 799
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.++++|||.|++++|+|+.|...++.. |++++.++++++ +|.+|++.|++.+.. ++|+|
T Consensus 120 vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~-~~~~~~~~l~~~~~~------~~k~i 191 (413)
T PLN00175 120 VTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMA-GAKIKTVTLRPP-DFAVPEDELKAAFTS------KTRAI 191 (413)
T ss_pred EeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEECCcc-cCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999988886 999999999754 388999999998853 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|.+ . +.++.++.. ..+++|+++||||.||++
T Consensus 192 ~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~-~~s~~~~~~-----~~~~vi~i~SfSK~~~~~ 264 (413)
T PLN00175 192 LINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG-D-HISMASLPG-----MYERTVTMNSLGKTFSLT 264 (413)
T ss_pred EecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC-c-ccChhhCCC-----CcCcEEEEecchhhccCc
Confidence 999999999999999999999999999999999999999987764 2 346655532 347899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... .+.++.+.|.+++.+|.++ +.++++.++.++++++.+.+.|.+.|+.+.+|+
T Consensus 265 G~RiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~p~ 340 (413)
T PLN00175 265 GWKIGWAIAP-PHLTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESYYEELKRDYSAKKDILVEGLKEVGFKVYPSS 340 (413)
T ss_pred chheeeeEeC-HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence 9999999995 555555544432 2558899999999999764 346788889999999999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
||+|+|++++... ...+.+++..|++++||.+.||+.|+.. +++++||+++ .+++++++++++|+++++
T Consensus 341 g~~f~~~~~~~~~----~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~-~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 341 GTYFVMVDHTPFG----FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC-KDEETLRAAVERMKTKLK 412 (413)
T ss_pred eeEEEEEeccccC----CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHh
Confidence 9999999985310 1123478899998889999999998642 3579999998 489999999999998875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=419.35 Aligned_cols=361 Identities=20% Similarity=0.378 Sum_probs=290.1
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i 122 (483)
+.++|+|+.++++++ ++.+.+.+...... .....|+++.|.++||+++|+++++.+| +.++++ +|
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~I 95 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQD-----------PRTHRYSASKGIPGLRRAQAAYYARRFG--VKLNPDTQV 95 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcC-----------cccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcE
Confidence 356799999988764 33333333321100 1246799999999999999999987777 557787 89
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||+|++++|+|+.|...+... |+++++++++.+++|..+ +++.+... .+++++
T Consensus 96 ~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~~---l~~~~~~~---~~~~~~ 168 (405)
T PRK09148 96 VATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMA-GGVIRSVPAEPDEEFFPA---LERAVRHS---IPKPIA 168 (405)
T ss_pred EEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhc-CCEEEEEeCCCCCCCccC---HHHHHhhc---cccceE
Confidence 99999999999999999999999999999999998888875 999999999766555444 44444321 237899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.++|.+++++|+++|++||++||+||+|.++.|++ ..+.++.++.. ..+++|+++||||.||+
T Consensus 169 v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~s~~~~~~-----~~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 169 LIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDG-NPPPSVLQVPG-----AKDVTVEFTSMSKTFSM 242 (405)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCC-CCCCChhhCCC-----ccCcEEEEeccccccCC
Confidence 9999999999999999999999999999999999999999987765 44455555422 23678899999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
||+|+||+++ ++.+.+.+...... +.+++++|.++..++.+. ++++++.+..++++++.+.+.|+++|+.+..|
T Consensus 243 pGlR~G~~v~-~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p 318 (405)
T PRK09148 243 AGWRMGFAVG-NERLIAALTRVKSYLDYGAFTPIQVAATAALNGP---QDCIAEMRELYKKRRDVLVESFGRAGWDIPPP 318 (405)
T ss_pred cchheeeeeC-CHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 9999999998 55666666555442 457889999999999753 34678888899999999999999999888889
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
++|+|+|++++...... .+.+++..+++++||.|.||..|+...++|+||+++ .+++++.+++++|.+++++..+
T Consensus 319 ~~g~f~~~~l~~~~~~~---~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~-~~~~~l~~al~~l~~~l~~~~~ 393 (405)
T PRK09148 319 AASMFAWAPIPEAFRHL---GSLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV-ENEQRIRQAARNIKRFLSSADE 393 (405)
T ss_pred CeeEEEEEECCCccCCC---CHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998643211 134788888878899999999997655789999998 6899999999999999987654
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=418.92 Aligned_cols=354 Identities=21% Similarity=0.349 Sum_probs=285.6
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCC-c
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPD-R 121 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~-~ 121 (483)
..++|+|+.++++++ ++.+.+.+.+. +.....|+++.|.++||++||+|+.+++| ++ ++++ +
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~-------------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~~ 92 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAAN-------------LDGLASYPTTAGLPALREAIAAWLERRYG--LPALDPATQ 92 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHH-------------hhhhcCCCCCCCCHHHHHHHHHHHHHHhC--CCcCCccce
Confidence 356799999998875 45555555431 12356799999999999999999988777 55 6775 8
Q ss_pred EEEeCChhHHHHHHHHHhcCC---CCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCC
Q 011570 122 IVMSGGATGAHETVAFCLADP---GDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNI 198 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~---gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 198 (483)
|++|+|+++++..++.++++| ||.|++++|+|+.|...++.. |++++++|++++++|.+|++.+++.+.+
T Consensus 93 i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~vp~~~~~~~~~d~~~l~~~~~~------ 165 (396)
T PRK09147 93 VLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLA-GAEPYFLNCDPANNFAPDFDAVPAEVWA------ 165 (396)
T ss_pred EEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhc-CCEEEEeccCccccCccCHHHHHHHHhh------
Confidence 999999999999999999999 899999999999999988876 9999999998777899999999887753
Q ss_pred ceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 199 RIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 199 ~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
+++++++||||||||.++|.+++++|+++|++|+++||+||+|.++.|++.....+.......+.....+++|+++||||
T Consensus 166 ~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK 245 (396)
T PRK09147 166 RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSK 245 (396)
T ss_pred ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEecccc
Confidence 78999999999999999999999999999999999999999999987765112222221111000002478999999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011570 279 DMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG 356 (483)
Q Consensus 279 ~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~ 356 (483)
.||++|+|+||++++ +.+.+.+...... +.++++.|.++...+.... ++++.++.++++++.+.+.|.+. +.
T Consensus 246 ~~~~~GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~~-~~ 319 (396)
T PRK09147 246 RSNVPGLRSGFVAGD-AALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEA----HVRENRALYREKFDAVTPILAPV-LD 319 (396)
T ss_pred ccCCccceeeeecCC-HHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchh----HHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 999999999999995 5555555444432 4578889988777776543 56778889999999999999875 66
Q ss_pred eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 357 CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 357 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
+..|++|+|+|++++. + +.+++..+++++||.+.||+.|+. .+.+++||+++. +++++++++++|
T Consensus 320 ~~~p~~g~f~~~~~~~--~------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~-~~~~l~~~l~rl 390 (396)
T PRK09147 320 VQLPDAGFYLWAKVPG--D------DTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA-PLAECVEAAERI 390 (396)
T ss_pred CCCCCeeEEEEEECCC--C------HHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC-CHHHHHHHHHHH
Confidence 7788999999999981 1 237888888888999999998863 235799999984 788999999999
Q ss_pred HHHHH
Q 011570 431 TSFML 435 (483)
Q Consensus 431 ~~~l~ 435 (483)
+++++
T Consensus 391 ~~~~~ 395 (396)
T PRK09147 391 VDFCR 395 (396)
T ss_pred HHHhc
Confidence 98774
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=422.37 Aligned_cols=363 Identities=19% Similarity=0.342 Sum_probs=289.9
Q ss_pred CCCcccccchhhhhc-----HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLAENLLC-----HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
..++|+|+.+++.+. ++.+.+.+.+.... .....|++..|.++||++||+|+++.++ +.+++
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lR~aiA~~~~~~~~--~~~~~ 131 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRS-----------GKGNSYGPGAGILPARRAVADYMNRDLP--HKLTP 131 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCChHHHHHHHHHHHHHhcC--CCCCc
Confidence 467899999977531 23333433321100 1235798899999999999999997766 56899
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|++++|.+++.++++|||.|++++|+|+.|...+... |++++.+++.++++|.+|++.|++++.+ +
T Consensus 132 ~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~l~~~~~~~~d~~~l~~~~~~------~ 204 (462)
T PLN02187 132 EDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYS-GLEVRKFDLLPEKEWEIDLEGIEAIADE------N 204 (462)
T ss_pred ccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEeCccccCCccCHHHHHHhcCC------C
Confidence 99999999999999999999999999999999999998888875 9999999987666899999999988753 6
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ ..+.++..+.. ..++|+++||||.
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~-~~~~s~~~~~~------~~~vi~l~SfSK~ 277 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGD-NPFVSMGKFAS------IVPVLTLAGISKG 277 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCC-CCceeHHHhcc------CCcEEEEecchhh
Confidence 7899999999999999999999999999999999999999999988876 55556665532 2579999999999
Q ss_pred cCCCCceEEEEEecC-hHH---HHHHHHhhhcC----CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011570 280 MGFPGFRVGIIYSYN-DQV---VSCARKMSSFG----LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS 351 (483)
Q Consensus 280 ~g~~GlRiG~li~~~-~~l---~~~~~~~~~~~----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 351 (483)
|++||+|+||+++++ +.+ .+.+......+ .++.+.|.++++++.+.. .+++++.++.++++++++.+.|+
T Consensus 278 f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~~~~~~l~~~r~~l~~~L~ 355 (462)
T PLN02187 278 WVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFAKKNKILKHNVDLVCDRLK 355 (462)
T ss_pred cCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999843 332 23333333332 247899999999997532 45788889999999999999999
Q ss_pred cCCc-e-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHH
Q 011570 352 QVGI-G-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 352 ~~gi-~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
+++. . +..|+||+|+|++++..... ...++.+++..+++++||.|.||+.|+ .++|+||+++ .+++.+++++++
T Consensus 356 ~~~~~~~~~~P~gg~fl~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg--~~~~iRis~~-~~~e~l~~al~r 431 (462)
T PLN02187 356 DIPCVVCPKKPESCTYLLTKLELSLMD-NIKDDIDFCVKLAREENLVFLPGDALG--LKNWMRITIG-VEAHMLEDALER 431 (462)
T ss_pred hCCCCcCCCCCCEeEEEEeecChhhCC-CCCCHHHHHHHHHhhCCEEEECccccC--CCCeEEEEeC-CCHHHHHHHHHH
Confidence 8743 3 34688999999988632111 111234677888888999999999996 4689999998 578999999999
Q ss_pred HHHHHHHhhhc
Q 011570 430 ITSFMLKNVEA 440 (483)
Q Consensus 430 L~~~l~~~~~~ 440 (483)
|.+++++..+.
T Consensus 432 L~~~l~~~~~~ 442 (462)
T PLN02187 432 LKGFCTRHAKK 442 (462)
T ss_pred HHHHHHHhhhc
Confidence 99999877643
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=417.66 Aligned_cols=350 Identities=23% Similarity=0.379 Sum_probs=288.7
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++++|+.+++.+. ++.+.+.+.+.... ....+|+++.|.++||+++|+|+++.+| ++++++ +|+
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~~vi 95 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAEN-----------PENHRYPSYEGMLAYRQAVADWYKRRFG--VELDPETEVL 95 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCeEE
Confidence 46789999988865 44455544431110 1246799999999999999999997776 456776 699
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|+.+...++.. |++++++|++++++|.+|++++++++.+ ++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 168 (383)
T TIGR03540 96 SLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFA-GGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLM 168 (383)
T ss_pred ECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhc-CCEEEEEecCcccCCccCHHHHHhhccc------cceEE
Confidence 9999999999999999999999999999999999988875 9999999998766788999999988753 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++||++||+||+|.++.|.+ ....++..+.. ..+++|+++||||.||++
T Consensus 169 ~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~-~~~~~~~~~~~-----~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 169 FINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG-YKAPSFLEVDG-----AKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred EEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC-CCCcCcccCCC-----cccCEEEEEecccccCCc
Confidence 999999999999999999999999999999999999999987765 44455555432 236789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+...... ..++.+.|.++..++.+. .+++++.++.++++++.+.+.|.+.|+.+.+++
T Consensus 243 GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 318 (383)
T TIGR03540 243 GWRIGMAVG-NADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGP---QDVVKEIRKIYQRRRDLLLEALKKIGIDVEKPK 318 (383)
T ss_pred cceeeEEeC-CHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCC
Confidence 999999998 45565555444332 346778999998988764 355778888999999999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
+|+|+|++++...+ ..+++..+++++||.|+||+.|+..+++++||+++ .+++++.+++++|++
T Consensus 319 ~~~~~~~~l~~~~~------~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 319 ATFYVWVPVPEGYT------SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT-VPDERLEEAVARIKK 382 (383)
T ss_pred cceEEEEECCCCCC------HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec-CCHHHHHHHHHHHhh
Confidence 99999999985432 23788888888899999999997655789999998 588899999999865
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=430.28 Aligned_cols=331 Identities=22% Similarity=0.363 Sum_probs=273.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
...|++..|.++||++||+|+.+..+ ..+++++|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |+
T Consensus 178 ~~~Y~~~~G~~~lReaia~~~~~~~~--~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~-g~ 254 (517)
T PRK13355 178 TEGYSDSKGLFSARKAIMQYAQLKGL--PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLA-GG 254 (517)
T ss_pred CCCCCCCcChHHHHHHHHHHHHhcCC--CCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHC-CC
Confidence 35799999999999999999976543 3478999999999999999999999999999999999999999988876 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++++++++|.+|++++++++.. ++++|+++|||||||.+++.+++++|+++|++||++||+||+|.++.|
T Consensus 255 ~~v~~~~~~~~~~~~d~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~ 328 (517)
T PRK13355 255 TAVHYRCDEQSEWYPDIDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVM 328 (517)
T ss_pred EEEEeecCcccCCCCCHHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcC
Confidence 99999998777899999999998853 789999999999999999999999999999999999999999999888
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec-ChH----HHHHHHHhhh-cCCCChHHHHHHHH
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY-NDQ----VVSCARKMSS-FGLVSSQTQHLIAT 320 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~-~~~----l~~~~~~~~~-~~~~s~~~q~~~~~ 320 (483)
++ ..+.++.++.+ ...+++++||||.|+++|+|+||++++ +.. +.+.+..... ...++.++|.++..
T Consensus 329 ~~-~~~~s~~~~~~------~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~ 401 (517)
T PRK13355 329 DG-LEHTSIASLAP------DLFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQT 401 (517)
T ss_pred CC-CCcccHHHhCC------CCeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHH
Confidence 76 55567776632 235778899999999999999999964 232 2322322222 24478899999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
+|.......+++.+.++ +.++++++.+.|+++ |+++.+|+|+||+|++++.... ...++.+++..+++++||.|.|
T Consensus 402 aL~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~~--~~~~~~~~~~~ll~~~gV~v~p 478 (517)
T PRK13355 402 ALGGHQSVKDYLVPGGR-VYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF--NIHDDEQFALDLLHDKKVLIVQ 478 (517)
T ss_pred HhcCCccHHHHHHHHHH-HHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCcccC--CCCCHHHHHHHHHHhCCEEEeC
Confidence 98754333555655443 445679999999988 8999999999999999874210 0112346788888889999999
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|+.|+...++||||+++ .+++++++++++|++++++.
T Consensus 479 g~~F~~~~~~~~Ris~~-~~~~~l~~a~~rl~~~~~~~ 515 (517)
T PRK13355 479 GTGFNWDKPDHFRVVYL-PRLEDLEDAMDRLADFFSYY 515 (517)
T ss_pred cchhCCCCcCEEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 99997667889999996 68999999999999999765
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=416.06 Aligned_cols=362 Identities=21% Similarity=0.346 Sum_probs=287.1
Q ss_pred CCCcccccchhhh----hc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLAENL----LC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~~n~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
..++|+|+.+++. ++ ++.+.+++.+.... .....|++..|.++||++||+|+.+.+| +++++
T Consensus 31 ~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~ 97 (409)
T PLN00143 31 HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRS-----------AKFNSYAPTGGILPARRAIADYLSNDLP--YQLSP 97 (409)
T ss_pred CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCH
Confidence 4578999999886 43 55555554431110 1245798889999999999999988776 56789
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.++++++.+|.+|++.|++++.. +
T Consensus 98 ~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 170 (409)
T PLN00143 98 DDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFH-HLEIRHFDLLPEKGWEVDLDAVEAIADE------N 170 (409)
T ss_pred hhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHc-CCEEEEEeccCCCCCcCCHHHHHHhccc------C
Confidence 99999999999999999999999999999999999999888876 9999999986556799999999987753 6
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++ ..+.++..+. ..+++|+++||||.
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~------~~~~vi~~~SfSK~ 243 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGS-KPFVPMGLFA------SIVPVITLGSISKR 243 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCC-CCCcchhhhc------ccCcEEEEccchhh
Confidence 7899999999999999999999999999999999999999999988865 4444544442 24689999999999
Q ss_pred cCCCCceEEEEEec-ChHHH------HHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011570 280 MGFPGFRVGIIYSY-NDQVV------SCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS 351 (483)
Q Consensus 280 ~g~~GlRiG~li~~-~~~l~------~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 351 (483)
|++||+|+||++++ ++.+. +.+..... ...++.++|.+++.++.+.. +.++++.++.++++++.+.+.|.
T Consensus 244 f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~ 321 (409)
T PLN00143 244 WMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKTT--EDFFSKTINILRAALAFCYDKLK 321 (409)
T ss_pred cCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999994 33332 22222222 22357799999999987531 34567777788888888989998
Q ss_pred cCCc-e-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHH
Q 011570 352 QVGI-G-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 352 ~~gi-~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
+++. . +..|+||+|+|++++..... ....+.+++..+++++||.+.||+.|+ .++|+||+++ .++++++++++|
T Consensus 322 ~~~~~~~~~~p~gg~f~w~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~--~~~~iRi~~~-~~~~~l~~al~r 397 (409)
T PLN00143 322 EIPCIMCPQKAEGAFFALVKLNLLLLE-DIEDDMEFCLKLAKEESLIILPGVTVG--LKNWLRITFA-VEQSSLEDGLGR 397 (409)
T ss_pred cCCCCCCCCCCCeeEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEEc-CCHHHHHHHHHH
Confidence 8743 3 23688999999999752100 111234677788888899999999996 4689999998 579999999999
Q ss_pred HHHHHHHhhh
Q 011570 430 ITSFMLKNVE 439 (483)
Q Consensus 430 L~~~l~~~~~ 439 (483)
|++++++..+
T Consensus 398 l~~~l~~~~~ 407 (409)
T PLN00143 398 LKSFCGRHAK 407 (409)
T ss_pred HHHHHHHhcc
Confidence 9999987654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=415.48 Aligned_cols=350 Identities=23% Similarity=0.392 Sum_probs=287.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++++|+.++|++. ++.+.+.+.+.... .....|+++.|.++||+++|+|+++.+| ..++++ +|+
T Consensus 31 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~ii 97 (385)
T PRK09276 31 VDVISLGIGDPDLPTPDHIIEAMCKAVED-----------PENHQYPSYEGMLEFRKAVADWYKRRFG--VELDPETEVI 97 (385)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 45789999988775 44555555431110 1245799999999999999999997776 456777 599
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |.+++.++++++.+|.+|++++++.+.+ ++++|
T Consensus 98 ~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v 170 (385)
T PRK09276 98 SLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFA-GGEPYFMPLKEENGFLPDLDAIPEDVAK------KAKLM 170 (385)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHc-CCEEEEEecCCCCCCcCCHHHHHHhccc------cceEE
Confidence 9999999999999999999999999999999999988876 9999999997666788999999887753 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..+.++..+.. ..+++|+++||||.||++
T Consensus 171 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~ 244 (385)
T PRK09276 171 FINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDG-YKPPSFLEVPG-----AKDVGIEFHSLSKTYNMT 244 (385)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCC-CCCCChhccCC-----CcCCEEEEecchhhcCCc
Confidence 999999999999999999999999999999999999999987765 44456555432 246789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+...... ..++.+.|.++..++.+. ..++++.++.++++++++.+.|++.|+++.+|.
T Consensus 245 GlRiG~~i~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 320 (385)
T PRK09276 245 GWRIGFAVG-NADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGP---QEVVEELRKIYQERRDILVEGLRKLGLEVEPPK 320 (385)
T ss_pred chhheeeeC-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 999999998 45566655544332 335668888888888652 456778888999999999999999999888899
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
+|+|+|++++...+ ..+++..+++++||.|.||..|+..+++++||+++ .+++++.+++++|++
T Consensus 321 ~~~~~~v~~~~~~~------~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~-~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 321 ATFYVWAPVPKGYT------SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT-VPDERIEEAVERIKK 384 (385)
T ss_pred cceEEEEECCCCCC------HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC-CCHHHHHHHHHHHhh
Confidence 99999999986432 33788888888899999999997656789999998 588899999999864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=413.49 Aligned_cols=347 Identities=19% Similarity=0.385 Sum_probs=288.1
Q ss_pred CcccccchhhhhcH-H-HHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 47 GVIQMGLAENLLCH-E-LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
++++|+.+++++++ + .+.+.+.... .....|+++.|.++||+++|+|+.+.+| +.+++++|++
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~i 94 (384)
T PRK06348 30 DIIDLSLGDPDLITDESIINAAFEDAK-------------KGHTRYTDSGGDVELIEEIIKYYSKNYD--LSFKRNEIMA 94 (384)
T ss_pred CcEEcCCCCCCCCCCHHHHHHHHHHHh-------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 57899999888753 2 2333332210 1346799999999999999999987776 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++.+++.+++++||+|++++|+|+.+...+... |.++++++++++++|.+|++.+++++++ ++++|+
T Consensus 95 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~ 167 (384)
T PRK06348 95 TVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMV-GGKPIILETYEEDGFQINVKKLEALITS------KTKAII 167 (384)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEecCCcCcCCcCCHHHHHHhhCc------CccEEE
Confidence 999999999999999999999999999999999999886 9999999986566789999999998753 689999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.++|.+++++|+++|++++++||+||+|.++.|+. .+.++.++.. ..+++|+++||||++|+||
T Consensus 168 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~-----~~~~vi~~~SfSK~~~l~G 240 (384)
T PRK06348 168 LNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE--DFVPMATLAG-----MPERTITFGSFSKDFAMTG 240 (384)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC--CccchhhcCC-----CcCcEEEEecchhccCCcc
Confidence 99999999999999999999999999999999999999987764 2345555432 2478999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||+++ ++.+.+.+..... .+++++++|.+++.++... ++++++.++.++++++++.+.|... ++.+.+|+
T Consensus 241 lRiG~~v~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~ 316 (384)
T PRK06348 241 WRIGYVIA-PDYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPK 316 (384)
T ss_pred ccceeeec-CHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 99999999 4666666555443 2457889999999888753 4557778888999999999999887 78888999
Q ss_pred ceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
||+|+|++++. ..+ ..+++..+++++||.|.||+.|+..+++++||+++ .+++++++++++|+++
T Consensus 317 gg~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 317 GSIYAFINIKKTGLS------SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT-VGIEVLEEAFNRIEKM 382 (384)
T ss_pred eeEEEEEecccCCCC------HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec-CCHHHHHHHHHHHHhh
Confidence 99999999974 222 33788888888899999999998656789999998 5899999999999753
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=423.19 Aligned_cols=376 Identities=18% Similarity=0.221 Sum_probs=297.6
Q ss_pred ccccccchhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccc
Q 011570 2 AFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEG 80 (483)
Q Consensus 2 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (483)
||..|+++|+|..+ .|+|+ |+....... ..........+++|+.+.+..+ ++.+.+.+.+..
T Consensus 49 a~~~L~~~g~i~~~---~~~G~----~v~~~~~~~-~~~~~~~~~~~i~L~~g~p~~~~~p~~~~~~~~~~--------- 111 (431)
T PRK15481 49 AYKRLVTAGLAQSQ---GRNGT----VIRGSPSPV-ALEGGDPGTPLHDLAGGNPDPQRLPDLSRYFARLS--------- 111 (431)
T ss_pred HHHHHHHCCCEEEe---CCCce----EEccCcchh-hhcccCCcchhhhhhcCCCChhHhHHHHHHHHHhh---------
Confidence 79999999999988 77888 543211000 0000111235688988865544 244445444311
Q ss_pred cccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH
Q 011570 81 LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 81 ~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~ 160 (483)
.....|+++.|.++||+++++|++...+ .+++|++|+|+++++.+++.++++|||.|++++|+|+.|...+
T Consensus 112 ----~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-----~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~ 182 (431)
T PRK15481 112 ----RTPRLYGDAPVSPELHAWAARWLRDDCP-----VAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINML 182 (431)
T ss_pred ----hhhhhcCCcCCCHHHHHHHHHHHhhccC-----CcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHH
Confidence 1235799999999999999999985322 3569999999999999999999999999999999999999999
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHHhhc-CcEEEEc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFINEK-NIHLVCD 238 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a~~~-~~~iI~D 238 (483)
+.. |++++++|+++++ +|++.|++++++ ++|+++++ |||||||.+++.+++++|+++|+++ +++||+|
T Consensus 183 ~~~-g~~~~~v~~~~~g---~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~D 252 (431)
T PRK15481 183 RYA-GFSASPVSVDAEG---MQPEKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIID 252 (431)
T ss_pred HHc-CCeEEeeccCCCC---CCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEec
Confidence 986 9999999997543 889999998864 67888887 9999999999999999999999999 9999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHH
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQH 316 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~ 316 (483)
|+|.++.+.. . .+.... ..+++|+++||||+|| ||+|+||++++ +.+.+.+...... ..++.++|.
T Consensus 253 e~Y~~~~~~~-~--~~~~~~-------~~~~vi~~~SfSK~~~-~GlRiG~~i~~-~~~~~~~~~~~~~~~~~~s~~~q~ 320 (431)
T PRK15481 253 DHFALLSSSP-Y--HSVIPQ-------TTQRWALIRSVSKALG-PDLRLAFVASD-SATSARLRLRLNSGTQWVSHLLQD 320 (431)
T ss_pred CchhhhccCC-C--CCCCcC-------CCCCEEEEeeeccccC-CCceeEEEeCC-HHHHHHHHHHHhccccCCCHHHHH
Confidence 9999875533 1 222211 2368999999999999 99999999994 5555555443332 347899999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+++.+|.++.+ .+++++.++.++++++.+.+.|.+.|+.+..|+||+|+|++++.. ..+++..+. ++||.
T Consensus 321 a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~p~gg~f~~~~l~~~--------~~~~~~~l~-~~gV~ 390 (431)
T PRK15481 321 LVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQYGIAIPSPGDGLNLWLPLDTD--------SQATALTLA-KSGWL 390 (431)
T ss_pred HHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCeEEEEEECCCC--------HHHHHHHHH-HCCcE
Confidence 99999998765 677889999999999999999999998887899999999999741 236677766 57999
Q ss_pred eeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 397 VSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 397 v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|.||+.|+.. ..+++||+++..+++++++++++|++++.
T Consensus 391 v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 391 VREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred EecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 9999999653 24689999997789999999999998874
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=414.22 Aligned_cols=353 Identities=23% Similarity=0.424 Sum_probs=291.3
Q ss_pred CCcccccchhhhhcH-HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLCH-ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|+|+.++|++++ +.+.+.+.+... .....|++..|.++||+++|+|+++.+| +.++++ +|+
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~ 85 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLE------------QGYTSYTANAGLLELRQEIAKYLKKRFA--VSYDPNDEII 85 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 467999999988753 334444332100 1245798889999999999999998777 556776 799
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++.++++|||.|++++|+|+.|...++.. |.++++++++.+++|.+|++.+++++.+ ++++|
T Consensus 86 ~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 158 (378)
T PRK07682 86 VTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLA-GGVPVPVATTLENEFKVQPAQIEAAITA------KTKAI 158 (378)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCCCCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999999888876 9999999987656789999999998754 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.++|.+++++|+++|++|+++||+||+|.++.|++ . +.++..+.. ..+++++++||||.||+|
T Consensus 159 ~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~-~~~~~~~~~-----~~~~~i~~~S~SK~~~~~ 231 (378)
T PRK07682 159 LLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-A-YTSFASIKG-----MRERTILISGFSKGFAMT 231 (378)
T ss_pred EEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-C-CCChhhccc-----ccCCEEEEecCcccccCh
Confidence 999999999999999999999999999999999999999987764 2 345544432 246899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+..... .+.+++++|.++..+|++.. .++++.++.++++++.+.+.|+++|+++..|+
T Consensus 232 GlR~G~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~ 307 (378)
T PRK07682 232 GWRLGFIAA-PVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN---DDVIRMRDSYRKRRNFFVTSFNEIGLTCHVPG 307 (378)
T ss_pred hhhhhhhhc-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence 999999999 4556665544332 24578899999999997643 24677888899999999999999999989999
Q ss_pred ceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||+|+|++++. ..+ ..+++..+++++||.|.||..|+...++++||+++. +++++++++++|++++++.
T Consensus 308 g~~~~~~~~~~~~~~------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 308 GAFYAFPSISSTGLS------SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYAT-SLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred eeEEEEEeccCCCCC------HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeCC-CHHHHHHHHHHHHHHHhhc
Confidence 99999998853 111 347888888778999999999976567899999984 7899999999999988653
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=414.75 Aligned_cols=363 Identities=22% Similarity=0.383 Sum_probs=292.9
Q ss_pred CCCcccccchhhh----hc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLAENL----LC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~~n~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
..++|+|+.+++. +. ++.+.+++.+... ....+.|++..|.++||+++|+++++.++ .++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 117 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALR-----------SGKYNSYSTCVGLLPARRAIAEYLSRDLP--YELST 117 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHH-----------cCcCCCCCCCccCHHHHHHHHHHHhhccC--CCCCh
Confidence 4578999999874 22 3444444433100 01245799999999999999999987766 56789
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|+++++.+++.++++|||+|+++.|+|+.|...+... |++++.+++.++.+|.+|++.+++.+.+ +
T Consensus 118 ~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~ 190 (430)
T PLN00145 118 DDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFS-GLEVRHFDLLPERGWEVDLEGVEALADE------N 190 (430)
T ss_pred hhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeeCCcccCCcCCHHHHHHHhCc------C
Confidence 99999999999999999999999999999999999998887775 9999999987667899999999988754 7
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..+.++..+. ...++|+++||||.
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~-~~~~~~~~~~------~~~~vi~~~S~SK~ 263 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGS-KPFVPMGVFG------EVAPVLTLGSISKR 263 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCC-CCccchhhhc------ccCcEEEEeccccc
Confidence 8999999999999999999999999999999999999999999988876 5556665553 24689999999999
Q ss_pred cCCCCceEEEEEec-ChHHHH------HHHHhhhc-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011570 280 MGFPGFRVGIIYSY-NDQVVS------CARKMSSF-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS 351 (483)
Q Consensus 280 ~g~~GlRiG~li~~-~~~l~~------~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 351 (483)
|++||||+||++++ ++.+.+ .+...... ..++++.|.++..+|.... +.+.++.++.++++++.+.+.|.
T Consensus 264 ~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~L~ 341 (430)
T PLN00145 264 WVVPGWRLGWIATCDPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIANTK--EEFFTKTLGLLKETADICYEKIK 341 (430)
T ss_pred cCCCCeeEEEEEEecchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999983 333322 22223222 2357789999999997632 45678888899999999999999
Q ss_pred cC-Ccee-ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHH
Q 011570 352 QV-GIGC-LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 352 ~~-gi~~-~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
++ |+.+ ..|+|++|+|++++..... ...++.+++..|++++||.+.||+.|+. ++|+||+|+ .+++.+++++++
T Consensus 342 ~~~g~~~~~~P~ga~y~~v~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pG~~fg~--~~~lRis~~-~~~~~l~~al~r 417 (430)
T PLN00145 342 EIKCITCPHKPEGSMFVMVKLDLSCLS-GIKDDMDFCCKLAKEESVVVLPGSALGM--KNWLRITFA-IDPPSLEDGLER 417 (430)
T ss_pred cCCCCCCCcCCCeeeEEEeccChhhcC-CCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeC-CCHHHHHHHHHH
Confidence 87 7775 4799999999999742100 0112447888999999999999999974 689999998 588999999999
Q ss_pred HHHHHHHhhhc
Q 011570 430 ITSFMLKNVEA 440 (483)
Q Consensus 430 L~~~l~~~~~~ 440 (483)
|++++.+..+.
T Consensus 418 l~~~~~~~~~~ 428 (430)
T PLN00145 418 LKSFCLRHAKL 428 (430)
T ss_pred HHHHHHHhccc
Confidence 99999887643
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=412.71 Aligned_cols=365 Identities=22% Similarity=0.379 Sum_probs=294.4
Q ss_pred CCCCCCCcccccchhhh----h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCC
Q 011570 41 PTKNPNGVIQMGLAENL----L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRI 115 (483)
Q Consensus 41 ~~~~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~ 115 (483)
...++.++|+|+++++. + +++.+.+++.+.... .....|++..|.++||+++++|++..+| +
T Consensus 26 ~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~ 92 (409)
T PLN02656 26 DEENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQS-----------NKFNGYAPTVGLPQARRAIAEYLSRDLP--Y 92 (409)
T ss_pred ccccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHHhcC--C
Confidence 34567889999999986 3 345555554431110 1346799989999999999999998766 5
Q ss_pred CcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 116 TFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 116 ~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
.+++++|++|+|+++++..++.+++++||+|++++|+|+.|....... |++++.++++++.+|.+|++.+++++.+
T Consensus 93 ~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~--- 168 (409)
T PLN02656 93 KLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFR-HLEVRYVDLLPEKGWEVDLDAVEALADQ--- 168 (409)
T ss_pred CCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHc-CCEEEEEeCCCcCCCCCCHHHHHHHhcc---
Confidence 578999999999999999999999999999999999999998877775 9999999987656789999999988753
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..+.++..+. ...++|+++|
T Consensus 169 ---~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~------~~~~vi~~~S 238 (409)
T PLN02656 169 ---NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS-NPFVPMGVFG------SIVPVLTLGS 238 (409)
T ss_pred ---CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC-CCcccHHHhc------ccCcEEEEcc
Confidence 67899999999999999999999999999999999999999999988876 4445555542 2468999999
Q ss_pred CccccCCCCceEEEEEecC-------hHHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYSYN-------DQVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~-------~~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 347 (483)
|||.|++||+|+||+++++ ..+.+.+..... ...++.++|.+++.++.+.. +.++++.++.++++++.+.
T Consensus 239 fSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~~~~~r~~~~ 316 (409)
T PLN02656 239 LSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD--ESFFKKTINILKQSSDICC 316 (409)
T ss_pred cchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999952 356655554433 34578899999999997532 4567888889999999999
Q ss_pred HhhhcC-Cce-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHH
Q 011570 348 WGLSQV-GIG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEI 425 (483)
Q Consensus 348 ~~L~~~-gi~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~ 425 (483)
+.|+++ ++. +..|+||+|+|++++..... ....+.+++..+++++||.|.||+.|+ .++|+||+++ .+++++++
T Consensus 317 ~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~-~~~~~~~~~~~~l~~~gV~v~pg~~fg--~~~~iRi~~~-~~~e~l~e 392 (409)
T PLN02656 317 DRIKEIPCITCPHKPEGSMAVMVKLNLSLLE-DISDDIDFCFKLAREESVIILPGTAVG--LKNWLRITFA-ADPSSLEE 392 (409)
T ss_pred HHHhhCCCCcCCcCCCeEEEEEEecchhhcC-CCCCHHHHHHHHHHhCCEEEecchhcC--CCCeEEEEeC-CCHHHHHH
Confidence 999887 333 35789999999999742110 001123566677778899999999996 3689999999 48999999
Q ss_pred HHHHHHHHHHHhh
Q 011570 426 ALSRITSFMLKNV 438 (483)
Q Consensus 426 ~l~~L~~~l~~~~ 438 (483)
++++|++++.+..
T Consensus 393 al~rl~~~~~~~~ 405 (409)
T PLN02656 393 ALGRIKSFYLRHS 405 (409)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988664
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=412.31 Aligned_cols=350 Identities=23% Similarity=0.379 Sum_probs=284.8
Q ss_pred CCcccccchhhhhcH-H-HHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cE
Q 011570 46 NGVIQMGLAENLLCH-E-LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i 122 (483)
.++++|+.+.+..++ . ..+........ .....|+++.|.++||+++|+|+++.+| ++++++ +|
T Consensus 35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~i 100 (394)
T PRK05942 35 LDLIDLGMGNPDGAAPQPVIEAAIAALAD------------PQNHGYPPFEGTASFRQAITDWYHRRYG--VELDPDSEA 100 (394)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhC------------CCCccCCCCCCCHHHHHHHHHHHHHHHC--CCcCCCCeE
Confidence 457899987554432 2 33333322100 1246799999999999999999998766 557888 49
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.++++|||+|++++|+|+.+...+... |+++++++++.+++|.+|++++++.+.+ ++|+
T Consensus 101 ~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~ 173 (394)
T PRK05942 101 LPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIA-GAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKI 173 (394)
T ss_pred EEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEeecCCccCCccCHHHHHHhccc------cceE
Confidence 99999999999999999999999999999999998888775 9999999998777899999999988753 7899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.++|.+++++|+++|+++|++||+||+|.++.+++ ..+.++.++.. ..+.+|+++||||.||+
T Consensus 174 i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~SfSK~~~~ 247 (394)
T PRK05942 174 LYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDG-YQPTSLLEIPG-----AKDIGVEFHTLSKTYNM 247 (394)
T ss_pred EEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCCCChhhCCC-----ccccEEEEecchhccCC
Confidence 9999999999999999999999999999999999999999987765 44455555422 23567889999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+|+|+||+++ ++.+.+.+..... .+.+++++|.++..+++.. ++++++.++.++++++++.+.|.+.|+.+.++
T Consensus 248 ~GlRiG~i~~-~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 323 (394)
T PRK05942 248 AGWRVGFVVG-NRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP---DSYLQQVQERYRTRRDFLIQGLGELGWNIPPT 323 (394)
T ss_pred hhhheeeeec-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHCCCeecCC
Confidence 9999999998 5566666655443 2457788999999998642 45678888999999999999999889988899
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
++|+|+|++++...+ ..+++.++++++||.|.||+.|+..+++|+||+++ .+.+.+.+++++|.++
T Consensus 324 ~~~~f~~~~~~~~~~------~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 324 KATMYLWVPCPVGMG------STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI-ADCDRLGEALDRLKQA 389 (394)
T ss_pred CeeeEEEEECCCCCC------HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec-CCHHHHHHHHHHHHHh
Confidence 999999999985332 23667778888899999999997656789999998 4778888888888653
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=410.87 Aligned_cols=353 Identities=22% Similarity=0.354 Sum_probs=282.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++++|+.|+|++. ++.+.+++... ......|+++.|.++||+++|+|+.+.+|....++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~-------------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~ 94 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALREN-------------LHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVL 94 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHH-------------hhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEE
Confidence 56799999998875 45566665542 1234679999999999999999998877732226785 899
Q ss_pred EeCChhHHHHHHHHHhcCCCCe--EEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 124 MSGGATGAHETVAFCLADPGDA--FLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~--Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
+|+|+++++..++.++++|||. |++++|+|+.|...++.. |++++.++++++++|.+|++++++++.+ ++|
T Consensus 95 it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k 167 (393)
T TIGR03538 95 PVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLA-GAEPYFLNCTAENGFLPDFDAVPESVWR------RCQ 167 (393)
T ss_pred ECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhc-CCeEEEeeccccCCCCCCHHHHHHHHhh------cce
Confidence 9999999999999999999986 999999999999888875 9999999998777899999999988764 789
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
+|+++|||||||.+++.+++++|+++|++||++||+||+|.++.+.+...+.+.............+++|+++||||.|+
T Consensus 168 ~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~ 247 (393)
T TIGR03538 168 LLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN 247 (393)
T ss_pred EEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC
Confidence 99999999999999999999999999999999999999999877653112233322111010013478999999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK 359 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~ 359 (483)
++|+|+||++++ +.+.+.+..... ...++++.|.++...+.+. +++++.++.++++++.+.+.|++. +.+..
T Consensus 248 ~~GlRvG~~i~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~ 321 (393)
T TIGR03538 248 LPGLRSGFVAGD-AEILKAFLRYRTYHGCAMPIPTQLASIAAWNDE----QHVRENRALYREKFAAVLEILGQV-LDLEL 321 (393)
T ss_pred CcccceEEEecC-HHHHHHHHHHHHhhccCcCHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhh-CcccC
Confidence 999999999995 555555544443 2347888999887777653 346778888999999999999875 56678
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|.||+|+|++++. + ..+++..+++++||.|.||+.|+. .+.+++||+++. +++++++++++|+++
T Consensus 322 p~gg~f~~~~~~~--~------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 322 PDAGFYLWPKVPG--D------DEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA-PLEECVEAAERIRSF 392 (393)
T ss_pred CCeeEEEEEECCC--C------HHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC-CHHHHHHHHHHHHHh
Confidence 9999999999981 1 236888888888999999998862 235799999984 789999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=412.47 Aligned_cols=357 Identities=21% Similarity=0.318 Sum_probs=289.8
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCC-
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPD- 120 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~- 120 (483)
.+.++++|+.++|++. ++.+.+.+.+.... .....|++ .|.++||+++|+|+.+.+| +. ++++
T Consensus 42 ~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~-----------~~~~~Y~~-~G~~~lr~aia~~~~~~~g--~~~~~~~~ 107 (410)
T PRK06290 42 PDMELIDMGVGEPDEMADESVVEVLCEEAKK-----------PENRGYAD-NGIQEFKEAAARYMEKVFG--VKDIDPVT 107 (410)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCC-CCcHHHHHHHHHHHHHHcC--CCcCCCcc
Confidence 3456899999999875 44455544431100 12346875 7999999999999988766 55 7786
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++..++.+++++||.|+++.|+|+.|...++.. |+++++++++++++|.+|++.+++++.+ ++
T Consensus 108 ~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~ 180 (410)
T PRK06290 108 EVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYY-GGEVYNLPLLEENNFLPDLDSIPKDIKE------KA 180 (410)
T ss_pred eEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHc-CCEEEEEecCCCcCCcCCHHHHHHhhcc------cc
Confidence 7999999999999999999999999999999999999988886 9999999998877899999999988753 78
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++|+++|||||||.++|.+++++|+++|++||++||+||+|.++.|++ . +.++.++.. ..+++|+++||||.|
T Consensus 181 k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~-~~s~~~~~~-----~~~~~I~i~SfSK~~ 253 (410)
T PRK06290 181 KLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-K-PLSFLSVPG-----AKEVGVEIHSLSKAY 253 (410)
T ss_pred eEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-C-CcChhcCCC-----ccccEEEEeechhhc
Confidence 999999999999999999999999999999999999999999987754 2 245554432 246789999999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~ 358 (483)
|+||+|+||+++ ++.+.+.+...... .+++.++|.++..++.+..+ +++.++.++++++.+.+.|++.|+.+.
T Consensus 254 g~~GlRiG~ii~-~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~ 328 (410)
T PRK06290 254 NMTGWRLAFVVG-NELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEI----TEKIREKYSRRLDKLVKILNEVGFKAE 328 (410)
T ss_pred CCchhheEeEEe-CHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHH----HHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence 999999999999 55566665554433 33456899999999987544 567788889999999999999999999
Q ss_pred cCCceEEEeeecCchhhc-cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHLLKE-QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFML 435 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~-~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~ 435 (483)
+|+||+|+|++++..... ....+..++++.|+++.+|.+.||+.|+ +|+||+++. .++++.++++++|++.+.
T Consensus 329 ~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~----~~lRi~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 329 MPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAG----HFLRFSVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred CCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCcccc----CeEEEEEEcccccccchhHHHHHHHHHHh
Confidence 999999999999864311 0011245789999988788888988663 699999985 378899999999999887
Q ss_pred Hh
Q 011570 436 KN 437 (483)
Q Consensus 436 ~~ 437 (483)
+.
T Consensus 405 ~~ 406 (410)
T PRK06290 405 DV 406 (410)
T ss_pred hc
Confidence 64
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=412.48 Aligned_cols=364 Identities=22% Similarity=0.392 Sum_probs=295.1
Q ss_pred CCCCcccccchhhh-----hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhC----CC
Q 011570 44 NPNGVIQMGLAENL-----LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRG----NR 114 (483)
Q Consensus 44 ~~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g----~~ 114 (483)
+..++|+|+.+.+. .+++.+.+++.+.... .....|+++.|.++||++||+|+++.++ .+
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~ 99 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDS-----------QECNGYPPTVGSPEAREAVATYWRNSFVHKESLK 99 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhc-----------CCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc
Confidence 55688999999875 3456666665442110 1346799999999999999999987542 12
Q ss_pred CCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 115 ITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 115 ~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
..+++++|++|+|+++++.+++.+++++||+|+++.|+|..+...++.. |++++.++++++.+|.+|++.+++++.+
T Consensus 100 ~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~~~~~~~d~~~l~~~~~~-- 176 (412)
T PTZ00433 100 STIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAY-GIEMRFYNCRPEKDWEADLDEIRRLVDD-- 176 (412)
T ss_pred CCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHc-CCEEEEEecCccccCcCCHHHHHHHhcc--
Confidence 4578999999999999999999999999999999999999999988886 9999999997666789999999988754
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ ..+.++..+.. ..++|+++
T Consensus 177 ----~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~------~~~~i~~~ 245 (412)
T PTZ00433 177 ----RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG-ATFTSVADFDT------TVPRVILG 245 (412)
T ss_pred ----CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC-CCccchhhccC------CCceEEEc
Confidence 68999999999999999999999999999999999999999999987765 44456655532 23578999
Q ss_pred cCccccCCCCceEEEEEec-C----hHHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSY-N----DQVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~-~----~~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 348 (483)
||||.||+||+|+||+++. + +.+.+.+..... .+.+++++|.+++.++.+. .+.++++.++.++++++.+.+
T Consensus 246 SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~l~~ 323 (412)
T PTZ00433 246 GTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT--PQEHLEQIVAKLEEGAMVLYN 323 (412)
T ss_pred cchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999972 2 345555544433 3468999999999888763 155688888899999999999
Q ss_pred hhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHH
Q 011570 349 GLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427 (483)
Q Consensus 349 ~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l 427 (483)
.|++. |+.+.+|+||+|+|++++...-. ......++++.+++++||.|.||+.|+. ++++||+++ ..++++++++
T Consensus 324 ~L~~~~~~~~~~p~gg~f~~~~l~~~~~~-~~~~~~~~~~~ll~~~gV~v~pg~~f~~--~~~iRis~~-~~~e~l~~al 399 (412)
T PTZ00433 324 HIGECIGLSPTMPRGSMFLMSRLDLEKFR-DIKSDVEFYEKLLEEENVQVLPGEIFHM--PGFTRLTIS-RPVEVLREAV 399 (412)
T ss_pred HHhcCCCCcccCCCeeEEEEEEechhhcC-CCCCHHHHHHHHHHhcCEEEeCccccCC--CCeEEEEec-CCHHHHHHHH
Confidence 99886 78888999999999998742100 0011347888888778999999999963 679999998 4788999999
Q ss_pred HHHHHHHHHhh
Q 011570 428 SRITSFMLKNV 438 (483)
Q Consensus 428 ~~L~~~l~~~~ 438 (483)
++|.+++++.+
T Consensus 400 ~~l~~~~~~~~ 410 (412)
T PTZ00433 400 ERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHhc
Confidence 99999998654
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=407.87 Aligned_cols=349 Identities=19% Similarity=0.333 Sum_probs=284.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|.++||+++++++.+.+| +++++ ++|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~i~ 94 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMR------------DGHNQYAPMAGIAALREALAEKTERLYG--ARYDPASEVT 94 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHH------------hCCCCcCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 36799999998875 4555555543110 1235799999999999999999998877 44555 6899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|++++|+|..+...++.. |++++.+++++ ++|.+|++.|++++.. ++++|
T Consensus 95 it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 166 (384)
T PRK12414 95 VIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQ-GATPVAIKLSP-EDFRVNWDEVAAAITP------RTRMI 166 (384)
T ss_pred EECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHc-CCEEEEEecCc-cccccCHHHHHhhcCc------ccEEE
Confidence 9999999999999999999999999999999998888876 99999999875 3588999999998753 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++||++||+||+|.++.|++ ..+.++..+.. ..+++|+++||||.||+|
T Consensus 167 ~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~SfSK~~~~p 240 (384)
T PRK12414 167 IVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDG-ARHHSMARHRE-----LAERSVIVSSFGKSYHVT 240 (384)
T ss_pred EEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCC-CCccCcccCcC-----ccCcEEEEecccccccCc
Confidence 999999999999999999999999999999999999999988875 44344443321 246899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... .+.++.++|.++..++.++.+ ..+.++.++++++.+.+.|++.|+.+.++.
T Consensus 241 GlRiG~~v~~-~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~ 315 (384)
T PRK12414 241 GWRVGYCLAP-AELMDEIRKVHQFMVFSADTPMQHAFAEALAEPAS----YLGLGAFYQRKRDLLARELAGSRFELLPSE 315 (384)
T ss_pred cceEEEEecC-HHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHhCCCeecCCC
Confidence 9999999995 555555555442 345788999999999987554 234667889999999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC--CCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN--PGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~--~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
||+|+|++++..... .+.+++..+++++||.|.||+.|+..+ .+++||+++. +++++++++++|.+
T Consensus 316 gg~~~~~~~~~~~~~----~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~-~~~~~~~~~~rl~~ 383 (384)
T PRK12414 316 GSFFMLARFRHFSDE----SDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK-DDATLVEGARRLCS 383 (384)
T ss_pred cceEEEEcccccCCC----CHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 999999998752211 123677777878899999999986432 5799999995 89999999999974
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=393.91 Aligned_cols=354 Identities=23% Similarity=0.357 Sum_probs=293.4
Q ss_pred ccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChh
Q 011570 51 MGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT 129 (483)
Q Consensus 51 l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~ 129 (483)
|+.+.+..+ |+.+.+++.+.... ...++|.+..|+++|+++|++.+...+|. .-...++|+||+|+.
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~-----------~~~~qYt~~~G~p~L~~aL~k~~se~~~~-~~~~~~eVlVT~GA~ 103 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKE-----------PSTNQYTRGYGLPQLRKALAKAYSEFYGG-LLDPDDEVLVTAGAN 103 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhcc-----------chhccccccCCchHHHHHHHHHHHHHhcc-ccCCcccEEEecCch
Confidence 888888776 56777766653322 13578999999999999999999987772 223445799999999
Q ss_pred HHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC------CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 130 GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD------SSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 130 ~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~------~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+++..++++++++||+|++.+|.|..|...++.. |.+.+.+++. ...+|.+|.+.|+.++.+ ++|+|
T Consensus 104 ~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~ma-G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~I 176 (420)
T KOG0257|consen 104 EAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMA-GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAI 176 (420)
T ss_pred HHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhc-CCcceeeccccccccccCccccCChHHHHhhccC------CccEE
Confidence 9999999999999999999999999999999986 9999999987 556899999999999975 89999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++|+||||||.++|+++|++|+++|++||++||+||+|..++|++ ..+.+++++ ++ .++++|.++|+||+||+.
T Consensus 177 i~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~-~~h~r~asl-Pg----m~ertitvgS~gKtf~~T 250 (420)
T KOG0257|consen 177 ILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDG-NKHIRIASL-PG----MYERTITVGSFGKTFGVT 250 (420)
T ss_pred EEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC-CcceeeecC-Cc----hhheEEEeccccceeeee
Confidence 999999999999999999999999999999999999999999998 777888887 43 579999999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHH-----HHHHHHHHHHHHHHHHHHHHhhhcCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFV-----EKFIAESAKRIAERHKAFTWGLSQVGIG 356 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~l~~~L~~~gi~ 356 (483)
|||+||+++ ++.+.......... ..++++.|.|.++++..+.-+ ..+.+++.+.|+++|+.|.+.|.++|++
T Consensus 251 GWrlGW~ig-p~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~ 329 (420)
T KOG0257|consen 251 GWRLGWAIG-PKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELGLK 329 (420)
T ss_pred eeeeeeeec-hHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999 67666665554432 457888998888777653311 1345668899999999999999999999
Q ss_pred eecCCceEEEeeecCchhhc---c---ChHHHHHHHHHHHHhcCeEeeCCCCCCCCC-----CCEEEEEeccCCHHHHHH
Q 011570 357 CLKSNAGLFLWMDLHHLLKE---Q---TYEAEMALWRVIINEVKLNVSPGSSFHCPN-----PGWFRVCFANMDDRTMEI 425 (483)
Q Consensus 357 ~~~~~~g~f~~~~l~~~~~~---~---~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~-----~~~iRis~~~~~~e~l~~ 425 (483)
+..|+|++|+|++++...+. . ....+..++..++++.|+.+.|++.|+... .+++|+++. .+++.++.
T Consensus 330 v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~-k~~~~L~~ 408 (420)
T KOG0257|consen 330 VTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFC-KADETLRK 408 (420)
T ss_pred cccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHH-hhHHHHHH
Confidence 99999999999999821110 0 011244688999999999999999998653 246888886 47788888
Q ss_pred HHHHHH
Q 011570 426 ALSRIT 431 (483)
Q Consensus 426 ~l~~L~ 431 (483)
++++|+
T Consensus 409 a~e~l~ 414 (420)
T KOG0257|consen 409 AIERLK 414 (420)
T ss_pred HHHHHh
Confidence 888887
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=413.13 Aligned_cols=350 Identities=21% Similarity=0.292 Sum_probs=278.0
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++++|+.++++++ ++.+.+.+.+..... ........|++..|.++||+++|+|+.+.+| +++++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 103 (409)
T PRK07590 33 EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEM-------GTAETFRGYGPEQGYDFLREKIAENDYQARG--CDISADEIF 103 (409)
T ss_pred CCceEEecCcCCCCCCCHHHHHHHHHHHhcc-------cccCCccCCCCCCCCHHHHHHHHHHHHHhcC--CcCChhhEE
Confidence 346899999998875 344445444311100 0001346798889999999999999987766 568999999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE-----------EEEeecCCCCCcccCHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ-----------LVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~-----------~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
+|+|+++++.++. .+++|||+|++++|+|+.|...++.. |.+ +++++++.+++|.+|.+.
T Consensus 104 it~Ga~~al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------- 174 (409)
T PRK07590 104 ISDGAKCDTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMA-GRTGEANEDGRYSGIVYLPCTAENNFVPELPE------- 174 (409)
T ss_pred ECCCHHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCcccccccccccceeEeecccccCCcccCcc-------
Confidence 9999999999875 56689999999999999999998886 886 899998766667666432
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
.++|+|++||||||||.++|.+++++|+++|++||++||+||+|.++.+.+ ..+.++.++.. ..+++|+
T Consensus 175 -----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~-~~~~~~~~~~~-----~~~~vi~ 243 (409)
T PRK07590 175 -----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDP-SLPHSIYEIEG-----ARECAIE 243 (409)
T ss_pred -----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCC-CCCcchhhCCC-----cccceEE
Confidence 278999999999999999999999999999999999999999999877655 33345555422 2357999
Q ss_pred EecCccccCCCCceEEEEEecChHHHH------------HHHHh--hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQVVS------------CARKM--SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKR 338 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l~~------------~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (483)
++||||+||+||+|+||++++++ +.+ ..... ..+..++.++|.+++.++.+.. .+++++.++.
T Consensus 244 ~~SfSK~~~~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~~~~~~~~ 320 (409)
T PRK07590 244 FRSFSKTAGFTGTRCAYTVVPKE-LKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQIKELIDY 320 (409)
T ss_pred EecCccccCCcCceeEEEEcCHH-HhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHHHHHHHHH
Confidence 99999999999999999999544 443 11111 1234578899999988887543 3567888899
Q ss_pred HHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccC
Q 011570 339 IAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418 (483)
Q Consensus 339 l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~ 418 (483)
++++++.+.+.|.+.|+.+.++.+|+|+|++++...+ +.+++..+++++||.+.||+.|+..+.+++||+++ .
T Consensus 321 ~~~~r~~l~~~L~~~~~~~~~~~g~~f~wi~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~ 393 (409)
T PRK07590 321 YMENAKIIREGLESAGFEVYGGVNAPYIWVKTPDGMS------SWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSAF-G 393 (409)
T ss_pred HHHHHHHHHHHHHhcCCceecCCcceEEEEECCCCCC------HHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEcc-C
Confidence 9999999999999999888888899999999986422 23678888888899999999997666789999975 4
Q ss_pred CHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSF 433 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~ 433 (483)
+++++++++++|+++
T Consensus 394 ~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 394 SRENVLEAMERIKKA 408 (409)
T ss_pred CHHHHHHHHHHHHhh
Confidence 889999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=407.49 Aligned_cols=349 Identities=23% Similarity=0.384 Sum_probs=288.6
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.++++++ ++.+.+++.+... .....|++..|.++||+++|+++++.+| +.+++++|++
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~i 97 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALA------------AGHTRYTAARGLPALREAIAGFYAQRYG--VDVDPERILV 97 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCccCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 36789999998864 5555555544211 1224688889999999999999998777 5678999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.++++|||+|++++|+|+.+...+... |.+++.++++.+++|.+|++.+++++++ ++++++
T Consensus 98 t~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 170 (387)
T PRK08960 98 TPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLV-EGAAQLVPVGPDSRYQLTPALVERHWNA------DTVGAL 170 (387)
T ss_pred ccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCeEEEEecCcccCCCCCHHHHHHHhCc------cceEEE
Confidence 999999999999999999999999999999999888876 9999999998777899999999998764 678899
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.+++.+++++|+++|+++|++||+||+|.++.|+. . ..++... .+++++++||||.||++|
T Consensus 171 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~-~-~~~~~~~--------~~~vi~~~S~SK~~g~~G 240 (387)
T PRK08960 171 VASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGV-D-AASVLEV--------DDDAFVLNSFSKYFGMTG 240 (387)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-C-CCChhhc--------cCCEEEEeecccccCCcc
Confidence 99999999999999999999999999999999999999877754 2 2344332 368999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee-ecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC-LKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~-~~~~ 361 (483)
+|+||++++ +.+.+.+..... ...++.+.|.++.+++.+. ..+++.+.++.++++++.+.+.|+++|+.+ ..|.
T Consensus 241 lRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 317 (387)
T PRK08960 241 WRLGWLVAP-PAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEARRAEFARRRDFLLPALRELGFGIAVEPQ 317 (387)
T ss_pred cEEEEEEcC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCC
Confidence 999999995 555555555443 2446889999988888653 246788888999999999999999988765 4688
Q ss_pred ceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 362 ~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
||+|+|++++.. .+ ..+++..+++++||.|.||+.|+.. .++|+||+++. +.+.+.+++++|+++++
T Consensus 318 g~~f~~~~~~~~~~~------~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~-~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 318 GAFYLYADISAFGGD------AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ-SLPRLQEAVERIARGLR 386 (387)
T ss_pred eeEEEEEeccccCCC------HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 999999999852 11 2478888888889999999999753 35699999994 78999999999988775
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=409.05 Aligned_cols=353 Identities=21% Similarity=0.371 Sum_probs=294.3
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+.+.+... .....|++..|.++||+++|+++++.+| ..+++++|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 98 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALD------------EGWTHYTPNAGIPELREAIAEYYKKFYG--VDVDVDNVIV 98 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcccEEE
Confidence 46799999998875 4455555443110 1234688888999999999999987776 4578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||.|++++|+|..+...+... |.+++.++++.+++|.+|++.+++.+.+ ++++|+
T Consensus 99 t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~ 171 (391)
T PRK08361 99 TAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIA-EAKPIRIPLREENEFQPDPDELLELITK------RTRMIV 171 (391)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------ccEEEE
Confidence 999999999999999999999999999999999988875 9999999998777889999999998864 688999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.+++++|+++|++++++||+||+|.++.|.+ ....++.++ ..+++++++||||.||++|
T Consensus 172 i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~-------~~~~~i~~~s~SK~~~~~G 243 (391)
T PRK08361 172 INYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEG-AKHYPMIKY-------APDNTILANSFSKTFAMTG 243 (391)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCC-CCCCCHhhc-------CCCCEEEEecCchhcCCcH
Confidence 99999999999999999999999999999999999999887765 444455444 2468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||++++ +.+.+.+..... .+.++++.|.++..++.+..+ .+++++.++.++++++.+.+.|++. |+.+.+|+
T Consensus 244 lRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 321 (391)
T PRK08361 244 WRLGFVIAP-EQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPK 321 (391)
T ss_pred hhhhhhccC-HHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC
Confidence 999999995 455555444433 356788999999999987653 3567888899999999999999987 88899999
Q ss_pred ceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 362 ~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
||+|+|++++. ..+ ..+++..+++++||.|.||..|+..+++++||+++ .+++++++++++|++++++
T Consensus 322 g~~~~~~~l~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~-~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 322 GAFYVFANIDETGMS------SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA-TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred EEEEEEEECCCCCCC------HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 99999999974 222 33678888877899999999998666789999998 4788999999999998864
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=402.51 Aligned_cols=356 Identities=22% Similarity=0.414 Sum_probs=290.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+.+++++. ++.+.+.+.+... .....|++..|.++||++++++++..++ +.+++ ++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 95 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAID------------ANQSHYTGMAGLLELRQAAADFVKEKYN--LDYAPENEIL 95 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46899999998875 4555555543110 1234698889999999999999998776 44554 7899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++.+++++||.|++++|+|..+...++.. |.+++.++.++ .+|.+|++.+++++.+. ..++++|
T Consensus 96 it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~---~~~~~~i 170 (391)
T PRK07309 96 VTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLV-GAEIVEIDTTE-NDFVLTPEMLEKAILEQ---GDKLKAV 170 (391)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHc-CCEEEEEecCC-cCCcCCHHHHHHHhhcc---CCCeEEE
Confidence 9999999999999999999999999999999999888876 99999999764 45789999999988642 2258999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ ..+.++.++. .+++|+++||||.||++
T Consensus 171 ~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~-------~~~~i~~~S~SK~~g~~ 242 (391)
T PRK07309 171 ILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTG-EPHVSIAEYL-------PDQTILINGLSKSHAMT 242 (391)
T ss_pred EEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCC-CCCCCHHHhc-------cCCEEEEecChhhccCc
Confidence 999999999999999999999999999999999999999988765 4445665552 37899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... ...+++++|.++..++.+..+ +....++.++++++++.+.|++.|+.+.+|+
T Consensus 243 GlRvG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~ 318 (391)
T PRK07309 243 GWRIGLIFAP-AEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKD---DALPMKKEYIKRRDYIIEKMTDLGFKIIKPD 318 (391)
T ss_pred cceeEEEEeC-HHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChh---HHHHHHHHHHHHHHHHHHHHHHCCCeecCCC
Confidence 9999999995 445555444332 245788999999999987532 1345667888899999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||+|+|++++..... ++.+++.++++++||.|.||..|+..+++++||+++. +.+++++++++|++++++.
T Consensus 319 gg~~~~~~l~~~~~~----~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 319 GAFYIFAKIPAGYNQ----DSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-SMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred eeEEEEEECCCCCCC----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 999999999864321 1346788888788999999999987667899999984 7899999999999988654
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=404.16 Aligned_cols=353 Identities=24% Similarity=0.446 Sum_probs=291.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.|+++++ ++.+.+.+.+... .....|++..|.++||+++|+++.+.+| ..+++++|++
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~la~~~~~~~~--~~~~~~~i~~ 89 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALA------------DGETFYTHNLGIPELREALARYVSRLHG--VATPPERIAV 89 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCcCcceEEE
Confidence 36799999999886 5566666554211 1124599999999999999999998776 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||.|++++|+|+.+...++.. |++++.+|++.+ ++|.+|++.+++.+.+ ++++|
T Consensus 90 t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i 162 (382)
T PRK06108 90 TSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKIL-GARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRAL 162 (382)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHC-CCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999999888876 999999998753 4688999999988753 68899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.......++.++.. ..+++++++||||.||++
T Consensus 163 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~ 237 (382)
T PRK06108 163 FINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE-----PDDRIIFVNSFSKNWAMT 237 (382)
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC-----CcCCEEEEeechhhccCc
Confidence 999999999999999999999999999999999999999987762133345555432 346899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS 360 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~ 360 (483)
|+|+||++++ +.+.+.+..... ...++.+.|.++..++.+. .+++++.+++++++++.+.+.|++. |+++.+|
T Consensus 238 G~RiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 313 (382)
T PRK06108 238 GWRLGWLVAP-PALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG---EDFVAELVARLRRSRDHLVDALRALPGVEVAKP 313 (382)
T ss_pred ccceeeeeCC-HHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence 9999999994 555555544332 2446888999998888764 2356777888899999999999887 8888889
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
++|+|+|++++...+ ..+++..|++++||.+.||+.|+...++++||+++. +++++++++++|+++++
T Consensus 314 ~~g~~~~~~l~~~~~------~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 314 DGAMYAFFRIPGVTD------SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR-DPARLDEAVERLRRFLA 381 (382)
T ss_pred CeeEEEEEeCCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 999999999975322 337888888888999999999976567899999996 99999999999998875
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=405.80 Aligned_cols=359 Identities=21% Similarity=0.379 Sum_probs=294.6
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.+.++++ ++.+.+.+.+... ....+|+++.|.++||+++++++.+.+| +.+++++|++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~ 98 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIE------------RGETKYTLVNGTPALRKAIIAKLERRNG--LHYADNEITV 98 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 46789999988775 3445555443111 1235799999999999999999988777 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|++++|+|..|...+... |.+++.++++.+++|.+|++.+++++.. ++++|+
T Consensus 99 t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 171 (402)
T PRK06107 99 GGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLAN-DGTPVIVACPEEQGFKLTPEALEAAITP------RTRWLI 171 (402)
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHhhcCc------CceEEE
Confidence 999999999999999999999999999999998887765 8888888887666788999999988753 788999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhc-CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEK-NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~-~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++|||||||.+++.+++++|+++|+++ +++||+||+|.++.|.+ ..+.++.++..+ ..+++++++||||.||+|
T Consensus 172 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~-~~~~~~~~~~~~----~~~~vi~~~S~SK~~~~p 246 (402)
T PRK06107 172 LNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDD-EPTPHLLAAAPE----LRDRVLVTNGVSKTYAMT 246 (402)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCC-CCCCCHHHhCcC----ccCCEEEEeccchhhcCc
Confidence 999999999999999999999999998 99999999999988876 555666665431 236899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS 360 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~ 360 (483)
|+|+||++++ +.+.+.+..... .+.++.++|.++..++.++ ..++++.++.++++++.+.+.|+++ |+++.+|
T Consensus 247 GlRiG~~~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p 322 (402)
T PRK06107 247 GWRIGYAAGP-ADLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFVTESVAVYKQRRDYALALLNAIPGLSCLVP 322 (402)
T ss_pred ccceeeeecC-HHHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC
Confidence 9999999994 556666655443 2458899999999999753 3467888889999999999999887 8888899
Q ss_pred CceEEEeeecCchhh-----ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLK-----EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~-----~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+||+|+|++++...+ .....+..+++..+++++||.++||+.|+. ++|+||+|+ .+++++++++++|+++++
T Consensus 323 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~--~~~iRis~~-~~~e~l~~~l~~l~~~l~ 399 (402)
T PRK06107 323 DGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL--SPYFRLSIA-TSLETLEEACARIERAVA 399 (402)
T ss_pred CcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC--CCeEEEEeC-CCHHHHHHHHHHHHHHHH
Confidence 999999999853211 000112347788888889999999999964 579999999 489999999999999886
Q ss_pred Hh
Q 011570 436 KN 437 (483)
Q Consensus 436 ~~ 437 (483)
+.
T Consensus 400 ~~ 401 (402)
T PRK06107 400 AL 401 (402)
T ss_pred hc
Confidence 54
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=396.52 Aligned_cols=341 Identities=23% Similarity=0.358 Sum_probs=280.6
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEEEe
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIVMS 125 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it 125 (483)
+++|+.+.+.++ ++.+.+++.+.. .....|+++.|.++||+++++|+.+.+| ++++++ +|++|
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~Iiit 66 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAV-------------PEVSQYPSALGTKALREAISGWFERRFG--VKLDPDAQVLPS 66 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHH-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEEc
Confidence 467787777665 555666665421 1345799999999999999999988777 667888 99999
Q ss_pred CChhHHHHHHHHHhcCCC---CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 126 GGATGAHETVAFCLADPG---DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~g---d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+++++..++.+++++| |.|+++.|+|+.|...++.. |+++++++++.+++|.+|++.+++++.+ ++++
T Consensus 67 ~Gs~~ai~~~~~~~~~~g~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~ 139 (350)
T TIGR03537 67 AGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFA-GGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKI 139 (350)
T ss_pred CChHHHHHHHHHHHcCCCCCCceEEEcCCCCcchHHHHHhc-CCEEEEcccCcccCCccCHHHHHHhhhh------ccEE
Confidence 999999999999999887 69999999999999999886 9999999997666789999999998865 7899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
+++++||||||.+++.+++++|+++|+++|++||+||+|.++.++. ...++..+ ..+++|+++||||.+|+
T Consensus 140 i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~-------~~~~~i~~~s~SK~~g~ 210 (350)
T TIGR03537 140 VWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGE--PPHSALEV-------GIENVLAFHSLSKRSGM 210 (350)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCC--CCCchhhc-------CcCCEEEEeecccccCC
Confidence 9999999999999999999999999999999999999999875543 33444443 34789999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcC--CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFG--LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+|+|+||+++ ++.+.+.+......+ ..+++.|.++..++.+..+ +++.++.++++++.+.+.|.+.|+++.+|
T Consensus 211 ~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~r~~l~~~~~~~~~~l~~~g~~~~~~ 285 (350)
T TIGR03537 211 TGYRSGFVAG-DEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNH----VLERRKIFKRKRDLFIEFFNKVGLEYLYP 285 (350)
T ss_pred ccccceeeec-CHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 9999999998 555666555544332 2344678877777765443 56677888999999999999999998999
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
.||+|+|++++...+ ..++++.|++ +||.|.||..|+...++++||+++ .+++++++++++|++
T Consensus 286 ~g~~~~~~~~~~~~~------~~~l~~~L~~-~gv~v~~g~~f~~~~~~~~Ri~~~-~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 286 DATFYLWVKVPSGID------AKDYALRLLE-NGIVVAPGENFGSGEEGYVRVALV-PTLEECEEALRLWER 349 (350)
T ss_pred CeEEEEEEECCCCCC------HHHHHHHHHH-CCEEEcCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHhc
Confidence 999999999986322 2377888875 699999999997655789999997 688999999999875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=373.30 Aligned_cols=356 Identities=21% Similarity=0.331 Sum_probs=309.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.+++.|.+++..++ ++.+.+++++.... ...+|+ .+..++.++|+.|..++++ ..+.++.|++
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdh------------GvfGY~--~~~~~~~~ai~~w~~~r~~--~~i~~e~i~~ 88 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDH------------GVFGYP--YGSDELYAAIAHWFKQRHQ--WEIKPEWIVF 88 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhc------------CCCCCC--CCCHHHHHHHHHHHHHhcC--CCCCcceEEE
Confidence 57899999998876 67777777663221 334665 5678899999999999988 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
++|...++..++++|++|||.|++..|.|+++...++.. |.++++.|+. +++.|.+|.+.||+++.+ .++|+.
T Consensus 89 ~p~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n-~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-----~~vkl~ 162 (388)
T COG1168 89 VPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLN-GRKVIENPLVEDDGRYEIDFDALEKAFVD-----ERVKLF 162 (388)
T ss_pred cCcchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhc-CcEEEeccccccCCcEEecHHHHHHHHhc-----CCccEE
Confidence 999999999999999999999999999999999999986 9999999986 567899999999999986 368999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++||||||||.+++.++|.+|.++|.+||+.||+||+|+++++.+ ..+.++.++.+. -.++++.+.|.||+|+++
T Consensus 163 iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g-~~h~~~a~ls~~----~a~~~it~~saSKtFNla 237 (388)
T COG1168 163 ILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGG-HKHIPFASLSER----FADNSITLTSASKTFNLA 237 (388)
T ss_pred EEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccC-CCccchhhcChh----hhcceEEEeeccccccch
Confidence 999999999999999999999999999999999999999999998 677888777552 247899999999999999
Q ss_pred CceEEEEEecChHHHHHHHH-hh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceee
Q 011570 284 GFRVGIIYSYNDQVVSCARK-MS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCL 358 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~-~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~ 358 (483)
|+.+++++.+++.+.....+ +. ....+|.++..|..++++.++ .|+.+..+.++.+++++.+.|++. ++++.
T Consensus 238 GL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~---~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~ 314 (388)
T COG1168 238 GLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGE---PWLDELLEYLKDNRDYVADFLNKHLPGVKVT 314 (388)
T ss_pred hhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 99999999988877554332 22 345688899889888888764 578999999999999999999997 89999
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|+|.|.+|+++....-. +.++.+.++++.+|.+.+|..||..+.|++|++++ ++.+.++++++||+.++++.
T Consensus 315 ~p~gTYL~WLD~r~l~l~-----d~~l~~~ll~~akVal~~G~~FG~~g~gf~RlN~a-cpr~~L~eal~ri~~al~~~ 387 (388)
T COG1168 315 EPQGTYLAWLDCRELGLD-----DSELAEFLLEEAKVALSPGSTFGEEGSGFVRLNFA-CPRAILEEALERLKRALKKR 387 (388)
T ss_pred cCCCceeeeeeccccCCC-----hHHHHHHHHHhhcEeccCCCccCcCCCceEEEecC-CCHHHHHHHHHHHHHHHhcc
Confidence 999999999999874322 23778899999999999999999999999999998 59999999999999988764
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=398.76 Aligned_cols=343 Identities=18% Similarity=0.256 Sum_probs=273.1
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.|+|+++ ++.+.+++.+.. .....|+++.|.++||+++|+|+.+.+| +++++++|++
T Consensus 24 ~~~i~l~~~~p~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~G~~~lr~aia~~l~~~~g--~~~~~~~I~i 88 (374)
T PRK05839 24 YKGLDLTIGEPQFETPKFIQDALKNNA-------------HLLNKYPKSAGEESLREAQRGFFKRRFK--IELKENELIP 88 (374)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHh-------------hccCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEE
Confidence 37899999998875 455555554321 2346799999999999999999998877 5678999999
Q ss_pred eCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 125 SGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 125 t~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
|+|+++++..++.+++ .+||.|+++.|+|+.|...++.. |+++++++++++++|.+|++..+ + .++|+
T Consensus 89 t~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~~~--~-------~~~k~ 158 (374)
T PRK05839 89 TFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS-RAKVLLMPLTKENDFTPSLNEKE--L-------QEVDL 158 (374)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhc-CCEEEEeecccccCCcCCcchhh--h-------ccccE
Confidence 9999999999988774 57999999999999999998876 99999999987777888865542 2 16899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+. ..+.++............+++|+++||||.||+
T Consensus 159 v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~--~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 236 (374)
T PRK05839 159 VILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYEN--TPPPSLLEASILVGNESFKNVLVINSISKRSSA 236 (374)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccC--CCCCCHhhhhcccCccccCcEEEEeccccccCC
Confidence 999999999999999999999999999999999999999986433 333454432110000134799999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
||+|+||++++ +.+.+.+...... +.++.+.|.++..++.+.. ++++.++.++++++++.+.| ++. .|
T Consensus 237 ~GlRiG~ii~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l---~~~--~p 306 (374)
T PRK05839 237 PGLRSGFIAGD-ASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDE----HAEFFRNIYAKNLKLAREIL---GIT--IP 306 (374)
T ss_pred ccceeEEEecC-HHHHHHHHHHHhhcCCCCChHHHHHHHHHhccch----HHHHHHHHHHHHHHHHHHhc---CCC--CC
Confidence 99999999994 5566655554432 4578888988887776544 45667788888888888766 443 67
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.||+|+|++++. ..+++.++++++||.|.||+.|+.. .++|+||+++ .+++++.+++++|+++++
T Consensus 307 ~gg~fi~~~~~~---------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~-~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 307 PATFYVWLPVDN---------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV-YDTPKLEKALEIIKTYLE 373 (374)
T ss_pred CeeEEEEEeCCC---------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec-CCHHHHHHHHHHHHHHhh
Confidence 899999999973 2378888887789999999988653 3689999998 489999999999998875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-49 Score=399.49 Aligned_cols=353 Identities=24% Similarity=0.428 Sum_probs=289.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++++|+.+.+.++ ++.+.+++.+... .....|++..|.++||+++|++++..+| +.++++ +|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~~I~ 93 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAIT------------ENYTSYTHNAGLLELRKAACNFVKDKYD--LHYSPESEII 93 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 45689999987654 3455555544211 1235798889999999999999987776 557888 999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++.+++++||.|+++.|+|+.+...++.. |++++.++.++ .+|.+|.+.+++.+.+ ++++|
T Consensus 94 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~i 165 (387)
T PRK07683 94 VTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLC-GAKPVFIDTRS-TGFRLTAEALENAITE------KTRCV 165 (387)
T ss_pred EeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHc-CCEEEEeecCc-ccCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999988876 99999999875 4688899999988753 68999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ . ..++.++.+ ..+++|+++||||.||+|
T Consensus 166 ~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~-~~~~~~~~~-----~~~~vi~~~s~SK~~~~p 238 (387)
T PRK07683 166 VLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-P-HTSIAHFPE-----MREKTIVINGLSKSHSMT 238 (387)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-C-cCChhhccC-----CcCCeEEEeeccccccCc
Confidence 999999999999999999999999999999999999999987754 3 345555422 346899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+.....+ ..+++++|.++..++.++. .+.++.++.++++++.+.+.|.+.|+.+.+++
T Consensus 239 GlRiG~i~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 314 (387)
T PRK07683 239 GWRIGFLFAP-SYLAKHILKVHQYNVTCASSISQYAALEALTAGK---DDAKMMRHQYKKRRDYVYNRLISMGLDVEKPT 314 (387)
T ss_pred cceeEEEEcC-HHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 9999999995 5555555443332 3467789999999997643 24677788899999999999998899989999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||+|+|+.++... ..+.+++..+++++||.|.||+.|+..+++++||+++. +++++.+++++|.+++++.
T Consensus 315 ~~~~~~~~~~~~~-----~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~~-~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 315 GAFYLFPSIGHFT-----MSSFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYAY-SIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred eeEEEEEecccCC-----CCHHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 9999999987521 01336777888888999999999976667899999985 8999999999999988654
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=400.59 Aligned_cols=354 Identities=25% Similarity=0.398 Sum_probs=285.1
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~i 124 (483)
++++|+.+.++.+ ++.+.+.+.+... .....|+++.|.++||+++++++++.+| +.++++ +|++
T Consensus 27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 92 (387)
T PRK08912 27 GAINLGQGFPDDPGPEDVRRAAADALL------------DGSNQYPPMMGLPELRQAVAAHYARFQG--LDLDPETEVMV 92 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcccEEE
Confidence 5689998876654 2223332222100 1245799999999999999999998777 567888 9999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |++++.+++++ .+|.+|++.+++.+.+ ++++|+
T Consensus 93 t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~~~~~l~~~~~~------~~~~v~ 164 (387)
T PRK08912 93 TSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRA-GGVPRLVRLEP-PHWRLPRAALAAAFSP------RTKAVL 164 (387)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCc-ccCcCCHHHHHHHhCc------cceEEE
Confidence 999999999999999999999999999999999988876 99999999864 3578999999998753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.++|.+++++|+++|++++++||+||+|.++.|++ ..+.++.++.. ..+++++++||||.||++|
T Consensus 165 l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 238 (387)
T PRK08912 165 LNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDG-RRHIPLMTLPG-----MRERTVKIGSAGKIFSLTG 238 (387)
T ss_pred EeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCC-CCCcChhhCCC-----ccCceEEEeechhhccCcC
Confidence 99999999999999999999999999999999999999887765 44455554422 2468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||++++ +.+.+.+...... +.+++..|.+++.++... .+++++.++.++++++.+.+.|+..|+++.+++|
T Consensus 239 lRiG~~~~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~g 314 (387)
T PRK08912 239 WKVGFVCAA-PPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKP---DDYFEGMRADLARSRDRLAAGLRRIGFPVLPSQG 314 (387)
T ss_pred ceeEEEecC-HHHHHHHHHHHhhccccCChHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc
Confidence 999999995 5555555444332 446667788887777532 3346778888999999999999999999999999
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
|+|+|++++..... .+..+++..+++++||.|.||..|+.. ..+|+||+++. +++.+++++++|++++++
T Consensus 315 ~~~l~~~l~~~~~~---~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~-~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 315 TYFLTVDLAPLGLA---EDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAK-RDATLDEAVERLAAARRR 386 (387)
T ss_pred ceEEEecccccCCC---CCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHhc
Confidence 99999999752100 123478888888889999999998643 35799999995 789999999999988764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-49 Score=398.13 Aligned_cols=352 Identities=21% Similarity=0.344 Sum_probs=287.5
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC-CCcEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD-PDRIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~i 124 (483)
++++|+.++++++ ++.+.+++.+.... .....|++..|.+++|+++++++.+.+| +.++ +++|++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~-----------~~~~~Y~~~~G~~~lr~~~~~~l~~~~g--~~~~~~~~i~~ 94 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN-----------PENHKYQAVQGIPPLLEAITQKLQQDNG--IELNNEQAIVV 94 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCeEEE
Confidence 5689999998764 45566665442110 1235799999999999999999988777 4455 678999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++.+ .+|.+|++++++++++ ++|+|+
T Consensus 95 t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~--~~~~~d~~~l~~~i~~------~~klv~ 165 (389)
T PRK05957 95 TAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMA-GCQPILVPTD--DNYQLQPEAIEQAITP------KTRAIV 165 (389)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhc-CCEEEEeecC--CCCCcCHHHHHHhcCc------CceEEE
Confidence 999999999999999999999999999999998877765 9999999975 3678999999998863 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.++|.+++++|+++|+++|++||+||+|.++.|++ ....+...+.. ...++|+++||||.||++|
T Consensus 166 ~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 239 (389)
T PRK05957 166 TISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDG-VKHFSPGSIPG-----SGNHTISLYSLSKAYGFAS 239 (389)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCC-CCccChhhCCC-----ccCcEEEEecchhhccCcc
Confidence 99999999999999999999999999999999999999987765 33344444422 3468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcC-C-ceeec
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDD-QFVEKFIAESAKRIAERHKAFTWGLSQV-G-IGCLK 359 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g-i~~~~ 359 (483)
+|+||++++ +.+.+.+...... ..++.++|.++..++.++ ++ +++.++.++++++.+.+.|.+. + +.+.+
T Consensus 240 lRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~ 314 (389)
T PRK05957 240 WRIGYMVIP-IHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSY----CQQHLPEIAQVRQILLKSLGQLQDRCTLHP 314 (389)
T ss_pred ceeEEEecC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHH----HHHHHHHHHHHHHHHHHHHHhcCCCccccC
Confidence 999999994 5566666554432 346778999998888763 34 4555566889999999999887 5 37778
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
++||+|+|++++...+ +.++++.+++++||.|.||+.|+...++|+||+++..+++++++++++|.+.+++.
T Consensus 315 ~~gg~~~~~~~~~~~~------~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~ 386 (389)
T PRK05957 315 ANGAFYCFLKVNTDLN------DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERLVQGLKTI 386 (389)
T ss_pred CCeeEEEEEeCCCCCC------hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999975432 34788888887899999999997666679999998678999999999999988764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=399.80 Aligned_cols=353 Identities=23% Similarity=0.400 Sum_probs=285.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.++++++ ++.+.+++.+... .....|++..|.++||+++|+|++..+| +.+++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 95 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALR------------RGVTQYTSALGLAPLREAIAAWYARRFG--LDVAPERIVV 95 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHhEEE
Confidence 46799999988764 4444555543111 1245699888999999999999988777 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |++++.++++.+++|.+|++++++.+.+ ++++|+
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (388)
T PRK07337 96 TAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAA-EGRPVLVPSGPAERFQLTAADVEAAWGE------RTRGVL 168 (388)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEeecCCccCCcCCHHHHHhhcCc------cceEEE
Confidence 999999999999999999999999999999998888875 9999999998666789999999988753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.+++++|+++|++++++||+||+|.++.|.+ . +.+...+ .+++|+++||||.||++|
T Consensus 169 l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~-~~~~~~~--------~~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 169 LASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA-A-PVSALSL--------GDDVITINSFSKYFNMTG 238 (388)
T ss_pred EECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC-C-CcChhhc--------cCCEEEEEechhhcCCch
Confidence 99999999999999999999999999999999999999876654 3 2343332 267899999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee-ecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC-LKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~-~~~~ 361 (483)
+|+||++++ +.+.+.+..... ...+++++|.++..++.+..+ . ++++.++.++++++.+.+.|++.|+.+ ..|+
T Consensus 239 ~RiG~~~~~-~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~-~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~ 315 (388)
T PRK07337 239 WRLGWLVVP-EALVGTFEKLAQNLFICASALAQHAALACFEPDTL-A-IYERRRAEFKRRRDFIVPALESLGFKVPVMPD 315 (388)
T ss_pred hheeeeecC-HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch-H-HHHHHHHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 999999995 555555544432 235788999999888875432 2 356778899999999999999888765 4688
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+|+|+|++++...... ..++.+++..+++++||.|.||+.|+.. .++|+||+++. +++.+.+++++|.+++
T Consensus 316 ~g~f~~~~~~~~~~~~-~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 316 GAFYVYADCRGVAHPA-AGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-SMSRLEEAVARLGKLF 387 (388)
T ss_pred eeEEEEEecccccCCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC-CHHHHHHHHHHHHHHh
Confidence 9999999997531101 0123478888888889999999999753 35799999985 7899999999998765
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=400.84 Aligned_cols=357 Identities=20% Similarity=0.348 Sum_probs=287.4
Q ss_pred CCcccccchhhh----h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 46 NGVIQMGLAENL----L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 46 ~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
.++++|+.+++. + +++.+.+.+.+.... .....|++..|.++||+++|++++.. + ..++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~aia~~~~~~-~--~~~~~~ 96 (401)
T TIGR01264 31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDS-----------GKYNGYAPTVGALSAREAIASYYHNP-D--GPIEAD 96 (401)
T ss_pred CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhc-----------cCCCCCCCCCCCHHHHHHHHHHHhhc-C--CCCCHH
Confidence 467899998763 3 345555555431110 12356988899999999999999863 3 347899
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++.+++.+++++||+|++++|+|..|...++.. |+++++++++.+++|.+|++.+++++.+ ++
T Consensus 97 ~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~-g~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~ 169 (401)
T TIGR01264 97 DVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESM-GIEVKLYNLLPDKSWEIDLKQLESLIDE------KT 169 (401)
T ss_pred HEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHHhcc------Cc
Confidence 9999999999999999999999999999999999999888876 9999999987666789999999988753 67
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ ..+.++..+.. ..++|+++||||+|
T Consensus 170 ~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~------~~~vi~~~SfSK~~ 242 (401)
T TIGR01264 170 AALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSG-ATFEPLASLSS------TVPILSCGGLAKRW 242 (401)
T ss_pred eEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCC-cccccHHHcCC------CCcEEEEccCcccC
Confidence 899999999999999999999999999999999999999999987765 45566666532 23689999999999
Q ss_pred CCCCceEEEEEecCh-----HHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 281 GFPGFRVGIIYSYND-----QVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 281 g~~GlRiG~li~~~~-----~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
+++|+|+||+++++. .+.+.+..... .+.+++++|.++..++.+. .++++++.++.++++++.+.+.|+++
T Consensus 243 ~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~ 320 (401)
T TIGR01264 243 LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGALAAVP 320 (401)
T ss_pred CCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999642 23333333332 3457889999999998752 24668888889999999999999988
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+.+..|++|+|+|++++..... ....+.+++..+++++||.|.||+.|+ .++++||+++ .+++++++++++|+++
T Consensus 321 ~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gI~v~pg~~f~--~~~~iRis~~-~~~~~l~~~l~rl~~~ 396 (401)
T TIGR01264 321 GLRPVMPSGAMYMMVGIEMEHFP-EFKNDVEFTERLVAEQSVFCLPGSCFE--YPGFFRVVLT-VPVVMMEEACSRIQEF 396 (401)
T ss_pred CCcccCCCeeeEEEEEecccccC-CCCCHHHHHHHHHHhCCEEEeCchhcC--CCCeEEEEEc-CCHHHHHHHHHHHHHH
Confidence 78877899999999998642000 011234788888878899999999886 3689999998 4789999999999998
Q ss_pred HHH
Q 011570 434 MLK 436 (483)
Q Consensus 434 l~~ 436 (483)
+++
T Consensus 397 ~~~ 399 (401)
T TIGR01264 397 CER 399 (401)
T ss_pred Hhc
Confidence 864
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=402.57 Aligned_cols=350 Identities=21% Similarity=0.332 Sum_probs=287.7
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|+|+.++++++ ++.+.+.+.+... .....|++..|.++||+++++++.+.++ +..+++ +|+
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~G~~~lr~~~a~~l~~~~~--~~~~~~~~i~ 95 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMA------------AGHNQYPPMTGVAALREAIAAKTARLYG--RQYDADSEIT 95 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 35789999887765 3445555443110 1235798889999999999999998777 445665 899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|++++|+|+.+...++.. |++++.++++++ +|.+|++.+++.+.+ ++++|
T Consensus 96 ~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~~~~~~~-~~~~d~~~l~~~~~~------~~~~v 167 (386)
T PRK09082 96 VTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELA-GGRAVRVALQPP-DFRVDWQRFAAAISP------RTRLI 167 (386)
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCcc-cccCCHHHHHHhcCc------cceEE
Confidence 9999999999999999999999999999999999988886 999999999753 589999999998853 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ ..+.++.++.. ..+++++++||||.||++
T Consensus 168 ~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~-~~~~s~~~~~~-----~~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 168 ILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDG-AGHASVLRHPE-----LRERAFVVSSFGKTYHVT 241 (386)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCC-CCCCChhhCcC-----ccCcEEEEeechhhccch
Confidence 999999999999999999999999999999999999999988865 44566665532 357899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+.+... .+.++.+.|.+++.++... ++++++.++.++++++++.+.|++.|+++.+++
T Consensus 242 G~RiG~iv~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 317 (386)
T PRK09082 242 GWKVGYCVAP-AALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEHYLELPAFYQAKRDRFRAALANSRFKLLPCE 317 (386)
T ss_pred hhhhhhhhCC-HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 9999999995 566665555432 2458889999999998632 344677788999999999999999899999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~--~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
||+|+|+++++..+ .+..+++..|++++||.+.||+.|+. .+.+++||+++. +++.+++++++|++
T Consensus 318 g~~~~~~~~~~~~~----~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~-~~~~l~~~~~rl~~ 385 (386)
T PRK09082 318 GTYFQLVDYSAISD----LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAK-QEETLDAAAERLCQ 385 (386)
T ss_pred eeEEEEEeccccCC----CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecC-CHHHHHHHHHHHhh
Confidence 99999999985211 12347888888889999999998863 245799999985 88999999999975
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=393.94 Aligned_cols=344 Identities=22% Similarity=0.311 Sum_probs=284.8
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
...++++|+++|+... ++.+..+..... .....|++..|.++||++||++++. +++++|
T Consensus 24 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~G~~~lr~~ia~~~~~-------~~~~~v 83 (373)
T PRK07324 24 AESCIDSLTLEELLALAGKNPEAFYQELG-------------QKKLTYGWIEGSPEFKEAVASLYQN-------VKPENI 83 (373)
T ss_pred ccCCCCCCcHHHHHhccCcchHHHHHHHh-------------cCCccCCCCCCCHHHHHHHHHHhcC-------CChhhE
Confidence 3467899999998754 333322222210 1235799999999999999999862 578999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++.+++.+++++||+|+++.|+|..+...++.. |++++.++++.+++|.+|++.+++.+.+ ++|+
T Consensus 84 i~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~-g~~v~~v~~~~~~~~~~d~~~l~~~~~~------~~kl 156 (373)
T PRK07324 84 LQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLVRP------NTKL 156 (373)
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHhCCC------CCcE
Confidence 99999999999999999999999999999999999888876 9999999998777899999999887753 7899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|++||++||+||+|.++.+.. .+.++.+. .+++|+++||||.||+
T Consensus 157 i~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~s~~~~--------~~~~I~~~s~SK~~~~ 226 (373)
T PRK07324 157 ICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG--STPSIADL--------YEKGISTNSMSKTYSL 226 (373)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCCChhhc--------cCCEEEEecchhhcCC
Confidence 9999999999999999999999999999999999999999876654 23454443 3678999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK 359 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~ 359 (483)
+|+|+||+++ ++.+.+.+.+.... ..++.++|.++..++... ++++++.++.++++++.+.+.|.+. ++.+..
T Consensus 227 ~G~RiG~i~~-~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~---~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 302 (373)
T PRK07324 227 PGIRVGWIAA-NEEVIDILRKYRDYTMICAGVFDDMLASLALEHR---DAILERNRKIVRTNLAILDEWVAKEPRVSYVK 302 (373)
T ss_pred ccceeEEEec-CHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHhcCCCceEEC
Confidence 9999999999 56677766665543 346778898888888753 4567888888999999999999887 788888
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|.+|+|+|+.++... +..+++.++++++||.|.||+.|+. ++++||+++. +++.+++++++|++++++.
T Consensus 303 p~gg~~~~i~~~~~~------~~~~~~~~ll~~~gv~v~pg~~F~~--~~~iRis~~~-~~~~l~~~l~rl~~~l~~~ 371 (373)
T PRK07324 303 PKAVSTSFVKLDVDM------PSEDFCLKLLKETGVLLVPGNRFDL--EGHVRIGYCC-DTETLKKGLKKLSEFLREF 371 (373)
T ss_pred CCceEEEEEEeCCCC------CHHHHHHHHHHhcCEEEECccccCC--CCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 999999999887532 2347889999889999999999963 5799999984 7899999999999998753
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=395.09 Aligned_cols=331 Identities=24% Similarity=0.370 Sum_probs=268.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
...|+++.|.++||+++|+++..... ..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++.. |+
T Consensus 65 ~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~ 141 (404)
T PRK09265 65 AQGYSDSKGLFSARKAIMQYYQQKGI--PDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLS-GG 141 (404)
T ss_pred CCCCCCCCCcHHHHHHHHHHHhccCC--CCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHc-CC
Confidence 45799999999999999999975432 2478999999999999999999999999999999999999999988875 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++++.+++|.+|++.+++++.. ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|
T Consensus 142 ~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 215 (404)
T PRK09265 142 KPVHYLCDEEAGWFPDLDDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILY 215 (404)
T ss_pred EEEEEecccccCCCCCHHHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccC
Confidence 99999887666788999999988753 789999999999999999999999999999999999999999999877
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec-ChH----HHHHHHHhh-hcCCCChHHHHHHHH
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY-NDQ----VVSCARKMS-SFGLVSSQTQHLIAT 320 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~-~~~----l~~~~~~~~-~~~~~s~~~q~~~~~ 320 (483)
++ ..+.++..+.. ..++|+++||||+||+||+|+||++++ +.. +.+.+.... ....++.++|.++..
T Consensus 216 ~~-~~~~~~~~~~~------~~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 288 (404)
T PRK09265 216 DG-AVHISIASLAP------DLLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQT 288 (404)
T ss_pred CC-CCcCCHHHcCC------CceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 65 44566665532 247899999999999999999999973 332 222222221 124578899999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
++.+.++..++++. .+.+.++++.+.+.|+++ |+++.+|+||+|+|++++..... ...+.+++..++.++||.|.|
T Consensus 289 ~l~~~~~~~~~~~~-~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~~--~~~~~~~~~~~l~~~gv~v~p 365 (404)
T PRK09265 289 ALGGYQSINELILP-GGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVYP--IHDDEQFVLDLLLQEKVLLVQ 365 (404)
T ss_pred HhcCchhHHHHHHH-HHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEecccccC--CCCHHHHHHHHHHhCCEEEEC
Confidence 99765443444333 345677789999999887 88889999999999999753210 011234566677788999999
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|+.|+...++|+||+++ .+++++++++++|++++++.
T Consensus 366 g~~F~~~~~~~~Ri~~~-~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 366 GTGFNWPEPDHFRIVTL-PRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred chhhCCCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 99997656789999996 68999999999999998754
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=394.84 Aligned_cols=357 Identities=20% Similarity=0.320 Sum_probs=285.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++++|+.+.+... ++.+.+.+.+... ......|+++.|.++||+++++|+++.+| +.++++ +|+
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~g--~~~~~~~~i~ 95 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQ-----------RPDTHGYSTSRGIPRLRRAISRWYQDRYD--VDIDPESEAI 95 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEE
Confidence 46788888765543 2222222222100 01346799999999999999999998777 557777 899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++..+++|||+|++++|+|+.+...++.. |++++.++++++++ +.+.++++++.. ..++++|
T Consensus 96 ~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~---~~~~l~~~l~~~---~~~~~~v 168 (395)
T PRK08175 96 VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIA-GAQVRSVPLVEGVD---FFNELERAIRES---YPKPKMM 168 (395)
T ss_pred EccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCeEEEEecccCCC---cHHHHHHHHhhc---cCCceEE
Confidence 9999999999999999999999999999999988888775 99999999976553 467788777531 2368999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ....++..+.. ..+++++++||||.||+|
T Consensus 169 ~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 169 ILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDG-WKAPSIMQVPG-----AKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCC-CCCcchhcCCC-----cccCEEEEeeccccccCc
Confidence 999999999999999999999999999999999999999987765 44455544421 236788999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+.+.... +++++++|.++..++... ++++++.++.++++++++.+.|.+.|+.+.+|.
T Consensus 243 GlRiG~~~~-~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~p~ 318 (395)
T PRK08175 243 GWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPK 318 (395)
T ss_pred chhheeeeC-CHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 999999998 55666666554432 446778888888888653 456788889999999999999999999888889
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+|+|+|++++..... .++.+++..+++++||.|.||+.|+..+++++||+++ .+++.+.+++++|.+++++
T Consensus 319 ~g~~i~i~l~~~~~~---~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~-~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 319 ASMYVWAKIPEPYAA---MGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI-ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred EEEEEEEECCcccCC---CCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC-CCHHHHHHHHHHHHHHHHh
Confidence 999999999864321 1234788888888899999999997666789999998 5889999999999998863
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=391.91 Aligned_cols=351 Identities=21% Similarity=0.301 Sum_probs=284.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.+.++|+.+++++. +..+.+.+.+... -.....|++..|.++||+++++++++.+| ..+++++|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 95 (386)
T PRK07550 29 GPLIDLSQAVPGYPPPPELLRALAEAAA-----------DPAAHLYGPVEGLPELREAYAAHYSRLYG--AAISPEQVHI 95 (386)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHh-----------CcCCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCcceEEE
Confidence 45799999998765 4445555443110 01345798889999999999999998877 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |+++++++++++.++.+|++.+++++++ ++++|+
T Consensus 96 t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~ 168 (386)
T PRK07550 96 TSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDML-GIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIA 168 (386)
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhc-CCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEE
Confidence 999999999999999999999999999999998888876 9999999998666788999999998864 688999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.++|.+++++|+++|+++|++||+||+|.++.+.. ....+...... ..+++++++||||.+|++|
T Consensus 169 ~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 242 (386)
T PRK07550 169 LVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGG-GAPHDLFADPD-----WDDTLVHLYSFSKSYALTG 242 (386)
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCCcchhhCCC-----ccccEEEEecchhhccCcc
Confidence 99999999999999999999999999999999999999875543 22223332211 2468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||++++ +.+.+.+..... . ..++.++|.+++.++.+ ++++.++.++.++++++.+.+.|.+. ++.+ .+.
T Consensus 243 ~RiG~i~~~-~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 317 (386)
T PRK07550 243 HRVGAVVAS-PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LAS 317 (386)
T ss_pred cceEeeecC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCC
Confidence 999999995 445544444332 2 34678899999999875 35667788889999999999999886 6654 466
Q ss_pred ceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|+|++++. ..+ ..+++..|++++||.|.||..|+...++++||+++..+++++++++++|+++
T Consensus 318 g~~~~~~~~~~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 318 GAYFAYVRHPFPDRP------SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred ceEEEEecCCCCCCC------HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 88999999975 222 3378888888889999999999755567999999877899999999999875
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=383.49 Aligned_cols=330 Identities=25% Similarity=0.405 Sum_probs=279.9
Q ss_pred CcccccchhhhhcH-HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLCH-ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++++|+.||||+++ +.+.+.+... ...++.||++ ...+|+++++++++. +++++|+++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~-------------~~~~~rYPd~-~~~~l~~a~a~~~~~-------~~~~~V~~g 81 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAA-------------LDKLNRYPDP-DYRELRAALAEYYGV-------VDPENVLVG 81 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCC-cHHHHHHHHHHHhCC-------CCcceEEEc
Confidence 67999999999985 4455554431 1246789988 579999999999872 578999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++.|..++++++.+||.|+++.|+|+.|...++.. |++++.++..+ |.+|++.+.+++.+ ++++|++
T Consensus 82 nGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~-g~~~~~v~~~~---~~~d~~~~~~~~~~------~~~lv~i 151 (356)
T COG0079 82 NGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLA-GAEVVKVPLKE---FRLDLDAILAAIRD------KTKLVFL 151 (356)
T ss_pred CChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhc-CCeEEEecccc---cccCHHHHHHhhhc------CCCEEEE
Confidence 99999999999999999999999999999999999886 99999999875 88999999998874 6899999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
||||||||..++.++++++++.+.+ +.+||+||+|.+ |.+ .+...+.. .++|+++++||||+||++|+
T Consensus 152 ~nPNNPTG~~~~~~~l~~l~~~~~~-~~~vVvDEAY~e--F~~----~~~~~l~~-----~~~nlivlRTfSKa~gLAGl 219 (356)
T COG0079 152 CNPNNPTGTLLPREELRALLEALPE-GGLVVIDEAYIE--FSP----ESSLELLK-----YPPNLIVLRTFSKAFGLAGL 219 (356)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhh--cCC----chhhhhcc-----CCCCEEEEEecHHhhhcchh
Confidence 9999999999999999999999988 899999999998 554 23333332 35889999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCce-eecCCceE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG-CLKSNAGL 364 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~-~~~~~~g~ 364 (483)
|+||+++ ++.+++.+++....|+++.+++.++.+++.+.++ +++..+.+.+.|+++.+.|+.+|+. +.++. ++
T Consensus 220 RlGy~ia-~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~----~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~-aN 293 (356)
T COG0079 220 RVGYAIA-NPELIAALNKVRPPFNVSSPALAAAIAALRDADY----LEESVERIREERERLYAALKALGLFGVFPSQ-AN 293 (356)
T ss_pred ceeeccC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHhCCCCeecCCC-Cc
Confidence 9999998 6788888989988888999999999999998654 6778888899999999999999855 66666 56
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
|++++++.. . ...+.+.|++ +||.|+.+.. .+..++|+||+++ ++++.+.++++|+++++.
T Consensus 294 Fvlv~~~~~------~-~~~l~~~L~~-~giivR~~~~-~~~~~~~lRitvg--t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 294 FVLVRVPDA------E-AAALAEALLK-KGILVRDCSS-VGLLPGYLRITVG--TPEENDRLLAALREVLKG 354 (356)
T ss_pred EEEEECCCc------c-HHHHHHHHHH-CCEEEEeCCC-CCCCCCeEEEEeC--CHHHHHHHHHHHHHHHhc
Confidence 999999851 1 2256777775 5999999876 4445779999999 888889999999988765
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=395.51 Aligned_cols=358 Identities=34% Similarity=0.572 Sum_probs=297.6
Q ss_pred Ccccccchhhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 47 GVIQMGLAENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 47 ~~i~l~~~~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
++|+|+.|++... .+.+++++.+... +.........|+++.|.++||+++|+|+++..+ ++++++ +|+
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~~i~ 72 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIR-------GAATSSSFLGYPPPQGYPELREAIADFLGRRYG--VPVDPEANIL 72 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHH-------HHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHT--HHTTGGEGEE
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHH-------HhhcccccccCCCchhhHHHHHHHHHHhhhccC--cccccceEEE
Confidence 4689999887764 2223333322100 001124567899999999999999999997666 667899 999
Q ss_pred EeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++..+ .++||.|++++|+|+.+...++.. |.++++++++.+++|.+|++.|++.+++...++.++++
T Consensus 73 ~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~ 151 (363)
T PF00155_consen 73 VTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLL-GAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKA 151 (363)
T ss_dssp EESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHT-TSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEE
T ss_pred EecccccchhhhhhcccccccccceecCCcccccccccccc-Cceeeeccccccccccccccccccccccccccccccce
Confidence 9999999999999999 899999999999999999999986 99999999887788999999999999875554435789
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.. ..+.+...... ...++++++||||.||+
T Consensus 152 v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~-----~~~~vi~~~S~SK~~g~ 225 (363)
T PF00155_consen 152 VLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGD-PDFGPIRSLLD-----EDDNVIVVGSLSKSFGL 225 (363)
T ss_dssp EEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSS-SHTHHHHGHHT-----TTSTEEEEEESTTTTTS
T ss_pred eeecccccccccccccccccchhhhhcccccceeeeeceeccccCC-CccCccccccc-----ccccceeeeeccccccc
Confidence 9999999999999999999999999999999999999999987775 43333222222 34569999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+|+||+++ ++.+.+.+......+..+++.|.+++.++.+.....+++++.++.++++++++.+.|.+.|+.+.++.+
T Consensus 226 ~GlRvG~i~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~~ 304 (363)
T PF00155_consen 226 PGLRVGYIVA-PPELIERLRRFQRSGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVLPPEA 304 (363)
T ss_dssp GGGTEEEEEE-EHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHHSB
T ss_pred cccccccccc-hhhhhhhhhhccccccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhheeeccC
Confidence 9999999999 677777777766665568899999999988876555688999999999999999999999999999999
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
|+|+|+.++.. ++.+++++|++++||.+.||..|+. ++++||+++..+++++++++++|
T Consensus 305 ~~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~pg~~~~~--~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 305 GFFLWVRLDPN-------DAEELAQELLEEYGILVRPGSYFGV--PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp SSEEEEEESHH-------HHHHHHHHHHHHHTEEEEEGGGGTS--TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred ccEEEEEcccc-------hHHHHHHHHHHhCCEEEEecCCCCC--CCEEEEEeccCCHHHHHHHHhhC
Confidence 99999998853 3458899999888999999999986 78999999557999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=393.04 Aligned_cols=356 Identities=22% Similarity=0.366 Sum_probs=284.6
Q ss_pred CCCcccccchhh---hh-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAEN---LL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+.++|+|+.+.+ ++ +++.+.+++.+... .....|++..|.++||+++|+|++..+| +.++++
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~ 94 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIK------------EGHNYYGPSEGLPELREAIVKREKRKNG--VDITPD 94 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHH------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCChh
Confidence 357899999987 34 34555555543110 1134698889999999999999988766 568899
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++..++.+++++||.|++++|+|+.+...++.. |.+++.++..++.+|.+|++.+++++.+ ++
T Consensus 95 ~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~ 167 (398)
T PRK08363 95 DVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFY-GGVPVEYRTIEEEGWQPDIDDIRKKITE------KT 167 (398)
T ss_pred hEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHc-CCEEEEeccccccCCcCCHHHHHhhCCc------ce
Confidence 9999999999999999999999999999999999999888875 9998888432334688999999988753 68
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ .+.++.++. ...++++++||||.|
T Consensus 168 ~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~--~~~~~~~~~------~~~~vi~~~SfSK~~ 239 (398)
T PRK08363 168 KAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEG--KHVSPGSLT------KDVPVIVMNGLSKVY 239 (398)
T ss_pred EEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCC--cccCHHHcC------cCCcEEEEecchhcc
Confidence 999999999999999999999999999999999999999999887754 334555553 235799999999999
Q ss_pred CCCCceEEEEEe-cChHHHHHHH-Hhh----hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 281 GFPGFRVGIIYS-YNDQVVSCAR-KMS----SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 281 g~~GlRiG~li~-~~~~l~~~~~-~~~----~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
++||+|+||+++ .++.+.+.+. ... ..+.++.++|.+++.++.+. .+++++.++.++++++.+.+.|.++
T Consensus 240 ~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~l~~~~~~~~~~~~~l~~~L~~~~ 316 (398)
T PRK08363 240 FATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGP---MDYLEEYMKKLKERRDYIYKRLNEIP 316 (398)
T ss_pred CCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998 3443333322 211 12457889999999888652 3457777888999999999999887
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+.+..|.||+|+|++++.... ..+.+++..+++++||.|+||+.|+..+++|+||+++ .+++++++++++|+++
T Consensus 317 ~~~~~~p~g~~~~~~~l~~~~~----~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-~~~~~l~~~l~~l~~~ 391 (398)
T PRK08363 317 GISTTKPQGAFYIFPRIEEGPW----KDDKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-PPVEILEEAMDRFEEF 391 (398)
T ss_pred CCEecCCCeEEEEEEEeccCCC----CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec-CCHHHHHHHHHHHHHH
Confidence 8888889999999999875210 0123666777778899999999997656789999997 5889999999999998
Q ss_pred HHHh
Q 011570 434 MLKN 437 (483)
Q Consensus 434 l~~~ 437 (483)
+++.
T Consensus 392 ~~~~ 395 (398)
T PRK08363 392 MRER 395 (398)
T ss_pred HHHh
Confidence 8763
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=391.51 Aligned_cols=354 Identities=22% Similarity=0.408 Sum_probs=288.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.++++++ ++.+.+++.+.. .....|++..|.+++|+++++++. .+| +.+++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~g~~~lr~~ia~~~~-~~~--~~~~~~~i~~ 93 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYD-------------EEVLAYSHSQGIPELREAFAKYYK-KWG--IDVEPDEILI 93 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHh-------------cCCcCcCCCCCCHHHHHHHHHHHH-HhC--CCCCcceEEE
Confidence 35789999988764 455555554311 124579999999999999999998 445 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCccc-CHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKV-TMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~-d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |.++++++++.+.+|.+ +++.+++++.+ ++++|
T Consensus 94 t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~g~~~~~~~~l~~~~~~------~~~~v 166 (397)
T PRK07568 94 TNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSA-GVKIVPVTTKIEEGFHLPSKEEIEKLITP------KTKAI 166 (397)
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHc-CCEEEEeecCcccCCCCCCHHHHHHhcCc------cceEE
Confidence 999999999999999999999999999999998877775 99999999875555654 67889888753 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ ..+.++.++.. ..+++++++||||.||++
T Consensus 167 ~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~-~~~~s~~~~~~-----~~~~~i~~~S~SK~~~~~ 240 (397)
T PRK07568 167 LISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDG-LKYTSALSLEG-----LEDRVIIIDSVSKRYSAC 240 (397)
T ss_pred EEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCC-CCccChhhcCC-----CcCCEEEEecchhhccCC
Confidence 999999999999999999999999999999999999999987765 44556665532 357899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhh-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
|+|+||++++++.+.+.+.... ..+.++.+.|.+++.++... +.++++.++.++++++.+.+.|+++ |+.+..|.
T Consensus 241 G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 317 (397)
T PRK07568 241 GARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLDTP---ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPK 317 (397)
T ss_pred CcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC
Confidence 9999999996666665544332 23457889999999999753 3457788889999999999999887 78888899
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHh-----cCeEeeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINE-----VKLNVSPGSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v~pg~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
||+|+|++++.. ...+++..++++ +||.+.||..|+.. +++++||+|+ .+++++++++++|+++
T Consensus 318 g~~~~~~~l~~~-------~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~-~~~~~~~~~~~~l~~~ 389 (397)
T PRK07568 318 GAFYIIAKLPVD-------DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYV-LNEEDLKRAMEILKEA 389 (397)
T ss_pred cceEEEEecCCC-------CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEe-CCHHHHHHHHHHHHHH
Confidence 999999999742 123677777764 69999999988532 3469999998 5789999999999999
Q ss_pred HHHhhh
Q 011570 434 MLKNVE 439 (483)
Q Consensus 434 l~~~~~ 439 (483)
+++...
T Consensus 390 l~~~~~ 395 (397)
T PRK07568 390 LEKYNK 395 (397)
T ss_pred HHHhhc
Confidence 987653
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=391.34 Aligned_cols=359 Identities=22% Similarity=0.385 Sum_probs=288.5
Q ss_pred CCcccccchhhh----h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 46 NGVIQMGLAENL----L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 46 ~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
.++++|+.+++. + +++.+.+.+.+.... .....|++..|.+++|+++|++++...+ +.++++
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~ 97 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRS-----------GKFNGYAPSVGALAAREAVAEYLSSDLP--GKLTAD 97 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCHH
Confidence 567999999763 2 344455544431110 1234798889999999999999997655 556889
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++.+++.+++++||+|+++.|+|+.+...+... |.+++.++++.+++|.+|++.+++++.+ ++
T Consensus 98 ~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~ 170 (403)
T TIGR01265 98 DVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFS-GLEVRLYDLLPEKDWEIDLDGLEALADE------KT 170 (403)
T ss_pred HEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEecCCcccCCccCHHHHHHHhCc------Cc
Confidence 9999999999999999999999999999999999998888775 9999999987666789999999988753 68
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
+++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..+.++.++.. ..++|+++||||.|
T Consensus 171 ~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~------~~~vi~~~S~SK~~ 243 (403)
T TIGR01265 171 VAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD-APFIPMASFAS------IVPVLSLGGISKRW 243 (403)
T ss_pred cEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC-CCccchhhhcc------CCcEEEEeeccccc
Confidence 899999999999999999999999999999999999999999987776 55566666642 35799999999999
Q ss_pred CCCCceEEEEEecC--hH----HHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 281 GFPGFRVGIIYSYN--DQ----VVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 281 g~~GlRiG~li~~~--~~----l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++||+|+||+++++ .. +.+.+..... ...++.++|.+++.++.+.. +.++++.++.++++++.+.+.|+.+
T Consensus 244 ~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (403)
T TIGR01265 244 VVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILENTP--QEFFDGKISVLKSNAELCYEELKDI 321 (403)
T ss_pred CCCcceEEEEEEeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999843 22 2333333332 34578899999999987522 4567888889999999999999987
Q ss_pred -CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 354 -GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 354 -gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
|+.+..|.+|+|+|++++..... ...+..+++..+++++||.|.||+.|+ .++|+||+++ .+++.+++++++|++
T Consensus 322 ~~~~~~~p~~g~f~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~pg~~f~--~~~~iRis~~-~~~~~l~~~l~~l~~ 397 (403)
T TIGR01265 322 PGLVCPKPEGAMYLMVKLELELFP-EIKDDVDFCEKLVREESVICLPGSAFG--LPNWVRITIT-VPESMLEEACSRIKE 397 (403)
T ss_pred CCceecCCCceeEEEEeccccccC-CCCCHHHHHHHHHHhCCEEEeCccccC--CCCeEEEEec-CCHHHHHHHHHHHHH
Confidence 78877899999999999753110 011234788888888899999999996 3689999998 478899999999999
Q ss_pred HHHHh
Q 011570 433 FMLKN 437 (483)
Q Consensus 433 ~l~~~ 437 (483)
++++.
T Consensus 398 ~~~~~ 402 (403)
T TIGR01265 398 FCERH 402 (403)
T ss_pred HHHhc
Confidence 88654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=398.43 Aligned_cols=358 Identities=20% Similarity=0.255 Sum_probs=273.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhh-hCCCCCcC-CCcE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKV-RGNRITFD-PDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~-~g~~~~~~-~~~i 122 (483)
.++|+|+.+++.++ ++.+.++.... .. .+|+++.|.++||++|++++.+. .+...... .++|
T Consensus 100 ~~~i~l~~g~p~~~~~~~v~e~~~~~--------------~~-~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I 164 (527)
T PRK09275 100 RDAVSYVRDQLGFDADEFVYELVDGI--------------IG-DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDL 164 (527)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHH--------------hc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeE
Confidence 34689999988876 44555544331 01 35999999999999999966543 22111112 3499
Q ss_pred EEeCChhHHHHHHHHH-----hcCCCCeEEEeCCCCcChHHHHhhh-cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 123 VMSGGATGAHETVAFC-----LADPGDAFLVPTPYYPGFDRDLRWR-TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 123 ~it~G~~~al~~~~~~-----l~~~gd~Vlv~~P~y~~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
++|+|+++++..++.+ +++|||+|++++|+|+.|...+... .|.++++++.+++++|.+|++.+++++.
T Consensus 165 ~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~----- 239 (527)
T PRK09275 165 FAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD----- 239 (527)
T ss_pred EEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC-----
Confidence 9999999999999886 6899999999999999999887764 2456677776666789999999998764
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
+++|+|+++|||||||.+++.+++++|+++|++ ++++||+||+|.++.+ .+.++.... ++++|+++
T Consensus 240 -~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~s~~~~~-------~~~~I~v~ 307 (527)
T PRK09275 240 -PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD----DFRSLFAVL-------PYNTILVY 307 (527)
T ss_pred -CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc----cccCHHHhC-------CCCEEEEe
Confidence 389999999999999999999999999999954 5999999999998543 234554442 37899999
Q ss_pred cCccccCCCCceEEEEEecChHHHHH----H--------------------------------HHhhh--cCCCChHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSC----A--------------------------------RKMSS--FGLVSSQTQH 316 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~----~--------------------------------~~~~~--~~~~s~~~q~ 316 (483)
||||.||++|||+||++++++.+.+. + ++... ...++++.|.
T Consensus 308 SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~ 387 (527)
T PRK09275 308 SFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQV 387 (527)
T ss_pred ehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHH
Confidence 99999999999999999976532211 1 12221 2346777887
Q ss_pred H-----HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---ccCh-------HH
Q 011570 317 L-----IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK---EQTY-------EA 381 (483)
Q Consensus 317 ~-----~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~---~~~~-------~~ 381 (483)
+ +.+++... +.+.+++++.+++|++.+.+.|. .++...+|+|+||+|++++.... +..+ .+
T Consensus 388 a~al~~~~all~~~---~~~~~~~~~~~~~Rr~~l~~~Lg-~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~ 463 (527)
T PRK09275 388 QMALFSLFALLDEE---DAYKKAMKDIIRRRYKALYEGLG-LPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYS 463 (527)
T ss_pred HHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHHHHcC-CCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCC
Confidence 6 23445432 34678888999999999998883 24444679999999999975321 1101 13
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
..+|+.+|++++||.+.||+.|+. .++++|||++..+++++.++.++|++++.+..++
T Consensus 464 ~~~f~~~Ll~e~gV~v~PG~~Fg~-~~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~ 521 (527)
T PRK09275 464 PVDLLFRLAEETGVVLLPGGGFGG-PEWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEE 521 (527)
T ss_pred HHHHHHHHHhcCCEEEeCchhhCC-CCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999975 4678999998778999999999999999988766
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=394.18 Aligned_cols=349 Identities=21% Similarity=0.303 Sum_probs=270.8
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++++|+.++++++ ++.+.+.+....... ........|++..|.++||+++|+++.+. .+++++|+
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-----~~~~d~I~ 99 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDEL-------ASEETFRGYGPEQGYPFLREAIAENDYRG-----RIDPEEIF 99 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcc-------cccccccCCCCCCCCHHHHHHHHHHHHhc-----CCCHHHEE
Confidence 357799999998865 444444443311100 00012356988889999999999986421 26899999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc-----------EEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV-----------QLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~-----------~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
+|+|+++++.+++ .++.+||.|++++|+|..|...++.. |+ ++++++++++++|.+|++..
T Consensus 100 it~Ga~~al~~l~-~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------ 171 (402)
T TIGR03542 100 ISDGAKCDVFRLQ-SLFGSDNTVAVQDPVYPAYVDSNVMA-GRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE------ 171 (402)
T ss_pred ECCCcHHHHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHc-CCccccccccccceEEEeecchhhCCCCCcccc------
Confidence 9999999999875 56689999999999999999988875 99 99999987666676664321
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
.++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.+++ ....++..+.. ..+++|+
T Consensus 172 -----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~-----~~~~vi~ 240 (402)
T TIGR03542 172 -----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDP-SLPHSIFEIPG-----AKECAIE 240 (402)
T ss_pred -----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCC-CCCcchhhCCC-----CcccEEE
Confidence 268999999999999999999999999999999999999999999976654 33344444422 2368999
Q ss_pred EecCccccCCCCceEEEEEecChHH-------HHHHH-Hh-hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQV-------VSCAR-KM-SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l-------~~~~~-~~-~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
++||||.||+||+|+||++++++.+ ..... .. ...+.++.++|.++..++.+..+ .+..+.++.+++++
T Consensus 241 ~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~~~~ 318 (402)
T TIGR03542 241 FRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPILEAISYYMENA 318 (402)
T ss_pred EecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHHHHHHHHHHHHH
Confidence 9999999999999999999965433 12221 12 22345788999998888876543 23556678889999
Q ss_pred HHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHH
Q 011570 344 KAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423 (483)
Q Consensus 344 ~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l 423 (483)
+.+.+.|++.|+++.++.+|+|+|++++...+ +.+++..+++++||.|+||+.|+..+++|+||+++. +++++
T Consensus 319 ~~~~~~L~~~~~~~~~~~~~~f~~v~l~~~~~------~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~~l 391 (402)
T TIGR03542 319 RILRKALEAAGFKVYGGEHAPYLWVKTPEGIS------SWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG-KRENI 391 (402)
T ss_pred HHHHHHHHhcCceecCCCceeEEEEECCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHH
Confidence 99999999889888888899999999986332 237888889888999999999976567899999864 88999
Q ss_pred HHHHHHHHHH
Q 011570 424 EIALSRITSF 433 (483)
Q Consensus 424 ~~~l~~L~~~ 433 (483)
++++++|+++
T Consensus 392 ~~~l~~l~~~ 401 (402)
T TIGR03542 392 VEACERIKEA 401 (402)
T ss_pred HHHHHHHHhh
Confidence 9999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=388.98 Aligned_cols=352 Identities=23% Similarity=0.382 Sum_probs=282.8
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~i 124 (483)
++++|+.+.+... ++.+.+.+.+... .....|++..|.++||+++++++.+.+| ++++++ +|++
T Consensus 25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~i~~ 90 (387)
T PRK07777 25 GAVNLGQGFPDEDGPPEMLEAAQEAIA------------GGVNQYPPGPGIPELRAAIAAQRRRRYG--LEYDPDTEVLV 90 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCcEEE
Confidence 5689998875543 2222232222100 1235799999999999999999988777 456676 7999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++ .+|.+|++.+++++.+ ++++|
T Consensus 91 t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v 163 (387)
T PRK07777 91 TVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMA-GAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRAL 163 (387)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHC-CCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEEE
Confidence 999999999999999999999999999999999888876 999999998765 4788999999998753 68999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.|.+ ..+.++..+.. ..+++++++||||.||++
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 164 IVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDG-ARHLPLATLPG-----MRERTVTISSAAKTFNVT 237 (387)
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCC-CCcccHhhCCC-----CcCcEEEEeechhhccCc
Confidence 999999999999999999999999999999999999999887765 44455554422 246899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... .+.++++.|.+++.++... ++++++.++.++++++.+.+.|.+.|+++.+++
T Consensus 238 GlRiG~~~~~-~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 313 (387)
T PRK07777 238 GWKIGWACGP-APLIAAVRAAKQYLTYVGGAPFQPAVAHALDHE---DAWVAALRDSLQAKRDRLAAGLAEAGFEVHDSA 313 (387)
T ss_pred CceeEEEecC-HHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCccCCC
Confidence 9999999984 555555544433 2346778888888888653 345777888999999999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
||+|+|++++.... ....++++.|++++||.|.||+.|+.. .++++||+++. +++++++++++|+++.
T Consensus 314 g~~~~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~-~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 314 GTYFLCADPRPLGY----DDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCK-RDDTLDEAIRRLRALR 384 (387)
T ss_pred cceEEEecccccCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 99999999863111 123478999988889999999988642 24689999984 8999999999998765
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=357.27 Aligned_cols=362 Identities=20% Similarity=0.352 Sum_probs=302.7
Q ss_pred CCcccccchhhhhc-----HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 46 NGVIQMGLAENLLC-----HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
..+|.++.+++..- .+...+++.+.. ..+..+.|++..|....|+++|+|+.+... -.++++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al-----------~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~--~kl~a~ 127 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDAL-----------RSGKGNGYAPSVGILPARRAVAEYLNRDLP--NKLTAD 127 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHH-----------hcCCCCCcCCccccHHHHHHHHHHhhcCCC--CccCcC
Confidence 36788888876541 122333332210 014568899999999999999999876543 457999
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++||.+++.+|.+||..||+|.|+|+.|...+... |.++..+.+-++.+|.+|++.+|+.+.+ +|
T Consensus 128 DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~-~lEVR~ydlLPe~~weIDL~~veal~DE------NT 200 (447)
T KOG0259|consen 128 DVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYS-GLEVRYYDLLPEKDWEIDLDGVEALADE------NT 200 (447)
T ss_pred ceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhc-CceeEeecccCcccceechHHHHHhhcc------Ce
Confidence 9999999999999999999999999999999999998888775 9999999998888999999999999876 89
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
.++++.|||||+|.+++.+.|++|++.|++++++||.||+|.+++|++ .+|.++.++.. .-.||.++|.||.|
T Consensus 201 ~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~-~pfvpmg~fss------iVPVitlggisKrW 273 (447)
T KOG0259|consen 201 VAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD-KPFVPMGKFSS------IVPVITLGGISKRW 273 (447)
T ss_pred eEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC-CCccchhhccc------cCceEeeccccccc
Confidence 999999999999999999999999999999999999999999999998 99999888854 35789999999999
Q ss_pred CCCCceEEEEEecCh-------HHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011570 281 GFPGFRVGIIYSYND-------QVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ 352 (483)
Q Consensus 281 g~~GlRiG~li~~~~-------~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 352 (483)
=.||||+||++..+. .+.+.+..+.. ....+++.|.|+-.+|.... +++.......++.+.+...+.|.+
T Consensus 274 ~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp--~efF~k~~~~lk~na~l~y~~Lk~ 351 (447)
T KOG0259|consen 274 IVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTP--EEFFDKKLSFLKSNADLCYSRLKD 351 (447)
T ss_pred ccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhCh--HHHHHHHHHHHHhhHHHHHHHHhc
Confidence 999999999998432 12222333322 24477899999999998654 567888889999999999999999
Q ss_pred C-Cce-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 353 V-GIG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 353 ~-gi~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
+ ++. ...|+|.+|+|+.+.-.. -..++++.+|+..|.+|..+.+.||..|+ .++|+|++++ .+.+.++++..||
T Consensus 352 IP~l~cp~kPeg~mylmv~l~~s~-~~~~~dD~dFc~kL~~Eesv~~LPG~af~--~~nw~Ri~i~-~~~~~leea~~Ri 427 (447)
T KOG0259|consen 352 IPCLTCPVKPEGCMYLMVKLNLSL-FPDIEDDVDFCQKLAREESVICLPGQAFG--LKNWLRIVIT-VEEEMLEEAFSRI 427 (447)
T ss_pred CCCcccCcCCCcceEEEeccchhh-hccccccHHHHHHHhhhcceEEecccccc--CCCeEEEEEc-cChHHHHHHHHHH
Confidence 8 787 568999999999987431 12345677999999999999999999997 4789999998 6889999999999
Q ss_pred HHHHHHhhhc
Q 011570 431 TSFMLKNVEA 440 (483)
Q Consensus 431 ~~~l~~~~~~ 440 (483)
+.+..+.-++
T Consensus 428 k~Fc~RH~~~ 437 (447)
T KOG0259|consen 428 KEFCDRHSKE 437 (447)
T ss_pred HHHHHhhhhc
Confidence 9999887633
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=384.50 Aligned_cols=332 Identities=19% Similarity=0.343 Sum_probs=271.5
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++++|+.++|+.+ ++.+.+.+.+.. .....|+++ +.++||+++|+|++ +++++|++|
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~Y~~~-~~~~lr~~ia~~~~--------~~~~~i~it 77 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENL-------------DKLVEYPDP-DYLELRKRIASFEQ--------LDLENVILG 77 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhhcCCCc-cHHHHHHHHHHHhC--------CChhhEEEC
Confidence 4689999998875 445555554311 234578765 68999999999985 689999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++++..++.++ .+ +.|++++|+|+.|...++.. |.+++.++++++++|.+| +.+.+.+.. ++++|++
T Consensus 78 ~Ga~~~l~~~~~~~-~~-~~v~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d-~~~~~~~~~------~~~~v~~ 147 (354)
T PRK06358 78 NGATELIFNIVKVT-KP-KKVLILAPTFAEYERALKAF-DAEIEYAELTEETNFAAN-EIVLEEIKE------EIDLVFL 147 (354)
T ss_pred CCHHHHHHHHHHHh-CC-CcEEEecCChHHHHHHHHHc-CCeeEEEeCccccCCCcc-HHHHHhhcc------CCCEEEE
Confidence 99999999999986 44 68999999999999988875 999999999877788899 666555532 6899999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++++|+++|++++++||+||+|.++.+++ .. .+...... ..+++|+++||||.||+||+
T Consensus 148 ~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~-~~~~~~~~-----~~~~vi~~~S~SK~~gl~G~ 220 (354)
T PRK06358 148 CNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN-ET-ISMINYLE-----NFKNLIIIRAFTKFFAIPGL 220 (354)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc-cc-hhHHHhcc-----CCCCEEEEEechhhccCcch
Confidence 9999999999999999999999999999999999999887654 32 34333332 35789999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGL 364 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~ 364 (483)
|+||++++++.+.+.+......+.++.++|.++..++.+..+ +++.++.++++++.+.+.|.+. |+.+.+++|+
T Consensus 221 RiG~lv~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~- 295 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQMREPWSINTFADLAGQTLLDDKEY----IKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN- 295 (354)
T ss_pred hheeeecCCHHHHHHHHHhCCCCcchHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-
Confidence 999999866677766666665667899999999999976543 5677778899999999999887 7888888765
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
|+|++++.. .++++.+++ +||.|+||+.|+..+++++||+++ +++++++++++|++++
T Consensus 296 f~~~~~~~~---------~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRls~~--~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 296 FIFFKLEKP---------IDLRKELLK-KGILIRSCSNYRGLDENYYRVAVK--SREDNKKLLKALEVIL 353 (354)
T ss_pred EEEEEcCch---------HHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 899999741 267777775 699999999996445689999998 8899999999998765
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=385.27 Aligned_cols=358 Identities=26% Similarity=0.472 Sum_probs=292.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.+++.++ ++.+.+.+.+... .....|++..|.++||+++|+++++.+| ..+++++|++
T Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~~ 96 (393)
T PRK05764 31 RDVISLGAGEPDFDTPEHIKEAAIEALD------------DGKTKYTPAAGIPELREAIAAKLKRDNG--LDYDPSQVIV 96 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHh------------cCCCCcCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 45789999988776 3445554443110 1234698889999999999999988776 4578899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||.|++++|+|..+...++.. |.++++++++++++|.+|++.+++++.+ ++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (393)
T PRK05764 97 TTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLA-GGVPVFVPTGEENGFKLTVEQLEAAITP------KTKALI 169 (393)
T ss_pred eCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHc-CCEEEEEecCcccCCcCCHHHHHHhhCc------cceEEE
Confidence 999999999999999999999999999999998888875 9999999998667889999999998853 688999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.++|.+++++|+++|++||+++|+||+|.++.|.+ ..+.++.++..+ ..+++++++||||.+|++|
T Consensus 170 ~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~----~~~~~i~~~s~SK~~~~~G 244 (393)
T PRK05764 170 LNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDG-AEFTSIASLSPE----LRDRTITVNGFSKAYAMTG 244 (393)
T ss_pred EECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCC-CCcccHHHcCCC----CcCCEEEEecCcccccCcc
Confidence 99999999999999999999999999999999999999887765 444565555221 3468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||+++ ++.+.+.+..... .+.+++++|.++..++... .+++++.++.++++++.+.+.|+++ |+.+..|+
T Consensus 245 ~RiG~i~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 320 (393)
T PRK05764 245 WRLGYAAG-PKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPE 320 (393)
T ss_pred ceeEEEec-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence 99999998 4556665554432 3457889999998888731 3557778888899999999999998 99989999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||+|+|++++........ ...++...+++++||.+.||..|+. ++++||+++. +++++++++++|.+++++.
T Consensus 321 g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~gi~v~~g~~f~~--~~~vRis~~~-~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 321 GAFYVFPNVSKLLGKSIT-DSLEFAEALLEEAGVAVVPGIAFGA--PGYVRLSYAT-SLEDLEEGLERIERFLESL 392 (393)
T ss_pred cceEEEEecccccccccC-CHHHHHHHHHHhCCEEEccccccCC--CCEEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 999999999864321110 1347788888888999999998864 6899999984 8999999999999988753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=410.63 Aligned_cols=368 Identities=16% Similarity=0.255 Sum_probs=284.3
Q ss_pred CCCCCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCc
Q 011570 39 YHPTKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITF 117 (483)
Q Consensus 39 ~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~ 117 (483)
+.+...+.++|+|+.|+|+++ ++.+.+++.+... . ..| +.|+++++++|++|+.+++| ++.
T Consensus 690 ~~~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~-------------~-~~~--s~g~pdlr~aLa~~la~~~G--v~~ 751 (1082)
T PLN02672 690 SVSGSQESSLIHMDVDESFLPVPSAVKASIFESFV-------------R-QNI--SESETDPRPSILQFIKSNYG--FPT 751 (1082)
T ss_pred CCcccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHh-------------h-cCC--CCCChHHHHHHHHHHHHHhC--cCC
Confidence 344555568899999999987 4566666543110 0 112 34578899999999998887 445
Q ss_pred CC-CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 118 DP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 118 ~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
++ ++|++|+|+++++..++.++++|||.|+++.|+|+.|...++.. |++++.+|++++++|.+|++.|++++.+
T Consensus 752 d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~-Ga~vv~Vpl~~e~gf~lD~d~Le~al~~---- 826 (1082)
T PLN02672 752 DSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFL-KANFRRIPTKSSDGFKLTAKTLASTLET---- 826 (1082)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc----
Confidence 54 58999999999999999999999999999999999999999986 9999999998767899999999998853
Q ss_pred CCceeEEEEeCCC-CCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc--chHHHhhhhcccc-CCCeEEE
Q 011570 197 NIRIKGVLITNPS-NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF--VSIAEIIDQDIAC-NRNLIHI 272 (483)
Q Consensus 197 ~~~~~~i~l~~P~-NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~--~s~~~l~~~~~~~-~~~~vi~ 272 (483)
.+.++|+++||| ||||.+++.+++++|+++|++||++||+||+|.++.|++ ... .++.+........ ...+|++
T Consensus 827 -~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~-~~~s~~sl~s~l~~~~~~sks~nVIv 904 (1082)
T PLN02672 827 -VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDT-SGWGGWDLKSILSRLKSSNPSFAVAL 904 (1082)
T ss_pred -CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCC-CCCcccchhhHHHHhccccCCceEEE
Confidence 134579999997 999999999999999999999999999999999888875 321 1222211110000 0137999
Q ss_pred EecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHh---cC--ChhHHHHHHHHHHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATM---LS--DDQFVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~---l~--~~~~~~~~~~~~~~~l~~~~~~l~ 347 (483)
++||||.|+++|+|+||++++++.+.+.+..........+..|.++..+ +. ++.| .+++.+.++.++++++++.
T Consensus 905 L~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~-~~~l~e~r~~Lk~rRd~L~ 983 (1082)
T PLN02672 905 LGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDL-LDGVAEQKKILKSRAERLK 983 (1082)
T ss_pred EeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976667776655433332333444444333 32 3344 5678888899999999999
Q ss_pred HhhhcCCceeecCCceEEEeeecCchhh------cc----C-hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec
Q 011570 348 WGLSQVGIGCLKSNAGLFLWMDLHHLLK------EQ----T-YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA 416 (483)
Q Consensus 348 ~~L~~~gi~~~~~~~g~f~~~~l~~~~~------~~----~-~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~ 416 (483)
+.|++.|+.+.+|+||||+|++++.... .. . -.++.++++.|++++||.|.||+.|+. ++|+||+++
T Consensus 984 e~L~~~Gi~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~--~g~~RIsfa 1061 (1082)
T PLN02672 984 ETLEACGWDVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI--PGYCRFSFA 1061 (1082)
T ss_pred HHHHHCCCeEecCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC--CCeEEEEec
Confidence 9999999999999999999998753211 00 0 012458999999888999999988763 689999998
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q 011570 417 NMDDRTMEIALSRITSFML 435 (483)
Q Consensus 417 ~~~~e~l~~~l~~L~~~l~ 435 (483)
.+++++++++++|+++.+
T Consensus 1062 -~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1062 -LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred -CCHHHHHHHHHHHHHHHH
Confidence 588899999999998654
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=386.26 Aligned_cols=328 Identities=19% Similarity=0.298 Sum_probs=265.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.|+|+++ ++.+.+++.+.. .....|+ ..|.++||++||++++ +++++|++
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~-------------~~~~~Yp-~~g~~~Lr~aia~~~~--------~~~~~I~v 86 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSW-------------LDHALYP-DGGATTLRQTIANKLH--------VKMEQVLC 86 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHH-------------HhcCcCC-CCCHHHHHHHHHHHhC--------CCcceEEE
Confidence 46799999999986 455666554311 1234575 4688999999999985 68999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.+++++ +.+|++.+++++.+ ++++|+
T Consensus 87 t~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~v~~v~~~~---~~~d~~~l~~~~~~------~~~~v~ 156 (366)
T PRK01533 87 GSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIE-GCEVKEVALNN---GVYDLDEISSVVDN------DTKIVW 156 (366)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCEEEEeecCC---CCcCHHHHHHHhCc------CCcEEE
Confidence 999999999999999999999999999999999998876 99999999853 46899999988753 689999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+||||||||.+++.+++++|+++|++++ ++|+||+|.++.+.+ . ..+...... ..+++|+++||||.||++|
T Consensus 157 i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~-~-~~~~~~~~~-----~~~~vi~~~SfSK~~~l~G 228 (366)
T PRK01533 157 ICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAK-D-FPETLPLLE-----KHKNILVLRTFSKAYGLAS 228 (366)
T ss_pred EeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccc-c-CcchhHHhc-----cCCCEEEEeCchHHhcChH
Confidence 9999999999999999999999998876 577899998765443 2 223333322 3578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceE
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~ 364 (483)
+|+||+++ ++.+.+.+.+....+.++.++|.++..+|.+.++ .++.++.++++++++.+.++.+|+++.+++| +
T Consensus 229 lRiG~~i~-~~~~~~~l~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~~~~~~~~r~~~~~~l~~~g~~~~~~~~-n 302 (366)
T PRK01533 229 FRVGYAVG-HEELIEKLNVVRLPFNVSSLAQKAATIAFGDDEF----IEEIVRVNTEGLRQYESFCKENEIPFYQSQT-N 302 (366)
T ss_pred HHHhHHhC-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHhCCCccCCCcC-c
Confidence 99999999 4666666666655577999999999999987655 4555666777788888888888998888865 5
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|+|++++. ..++.+.|+ ++||.|++ | ++++||+++ +.++++.++++|+++++..+
T Consensus 303 f~~~~~~~---------~~~~~~~l~-~~GI~Vr~---~----~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 357 (366)
T PRK01533 303 FIFLPVEN---------GGEIYEACA-HAGFIIRP---F----PNGVRITVG--TREQNEGVISVLQQHFENKK 357 (366)
T ss_pred EEEEeCCC---------HHHHHHHHH-HCCcEEcc---C----CCceEEeCC--CHHHHHHHHHHHHHHHHhcc
Confidence 99999863 125666666 57999997 3 368999998 88999999999998876554
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=386.41 Aligned_cols=344 Identities=18% Similarity=0.223 Sum_probs=268.8
Q ss_pred Ccccccchhh---h--hc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAEN---L--LC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~n---~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
++|+|+.+.+ . .+ .+.+.+++.+.... .....|+++.|.++||+++++|+....+ ..++++
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~-----------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~ 93 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET-----------ETTKNYLPIEGLAAYRQAVQELLFGADS--PALAAG 93 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhccc-----------ccCCCcCCCCCCHHHHHHHHHHhcCCCC--cccccC
Confidence 6799999852 1 12 24555555442111 1345799999999999999999975433 235788
Q ss_pred cE--EEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 121 RI--VMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 121 ~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
+| ++|+|+++++.++++++ ++|||+|++++|+|+.|...++.. |++++++|+.++++|.+|++.+++++.+.
T Consensus 94 ~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--- 169 (396)
T PRK09257 94 RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAA-GLEVKTYPYYDAATKGLDFDAMLADLSQA--- 169 (396)
T ss_pred eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHc-CCcEEEEeccccccCccCHHHHHHHHHhC---
Confidence 87 99999999999998766 589999999999999999999986 99999999843445889999999988642
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
..+.++++++|||||||.++|.+++++|+++|++||++||+||+|.++.++.+..+.++..+.. ..+++|+++||
T Consensus 170 ~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~-----~~~~vi~i~Sf 244 (396)
T PRK09257 170 PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA-----AGLELLVASSF 244 (396)
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh-----cCCcEEEEEEc
Confidence 1234566779999999999999999999999999999999999999976542122345544433 34689999999
Q ss_pred ccccCCCCceEEEEEe--cChH-HH---HHHHHh--hhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHHHHHHHHH
Q 011570 277 SKDMGFPGFRVGIIYS--YNDQ-VV---SCARKM--SSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKRIAERHKA 345 (483)
Q Consensus 277 SK~~g~~GlRiG~li~--~~~~-l~---~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~ 345 (483)
||.|+++|+|+||+++ ++.. +. ..+... ..++.++.+.|.+++.++.++.+ ..+++++.++.++++++.
T Consensus 245 SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~ 324 (396)
T PRK09257 245 SKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQL 324 (396)
T ss_pred CCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999989999999984 3332 22 222222 23344688899999999988643 367788899999999999
Q ss_pred HHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHH
Q 011570 346 FTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR 421 (483)
Q Consensus 346 l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e 421 (483)
+.+.|++.+ +.+..|+||+|+|++++. +++.++++++||.+.|. + ||+|+..+++
T Consensus 325 l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~-----------~~~~~l~~~~~V~~~p~--------~--ri~~~~~~~~ 383 (396)
T PRK09257 325 LVEALKAKGPSRDFDFIARQRGMFSYSGLTP-----------EQVDRLREEFGVYAVGS--------G--RINVAGLNES 383 (396)
T ss_pred HHHHHHhcCCCCCcccccccceEEEecCCCH-----------HHHHHHHHcCCEEEcCC--------C--eEEEeeCCHH
Confidence 999999874 667889999999998862 45677888999998862 2 9999878999
Q ss_pred HHHHHHHHHHHH
Q 011570 422 TMEIALSRITSF 433 (483)
Q Consensus 422 ~l~~~l~~L~~~ 433 (483)
++++++++|+++
T Consensus 384 ~i~~~~~~i~~~ 395 (396)
T PRK09257 384 NIDYVAEAIAAV 395 (396)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-47 Score=385.79 Aligned_cols=346 Identities=16% Similarity=0.186 Sum_probs=268.5
Q ss_pred Ccccccchhhh-hc-----HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAENL-LC-----HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~n~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
++++|+.+.++ .. .+.+.+++..... .....+|+++.|.++||+++|+|+....+ ..++++
T Consensus 30 ~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~ 96 (404)
T PTZ00376 30 SKVNLGIGAYRDENGKPYVLESVRKAEKIIAE-----------KNLDKEYLPIEGLQSFIEAAQKLLFGEAS--YALAEK 96 (404)
T ss_pred ccEecccceeECCCCCEehhhHHHHHHHHhcc-----------ccCCCCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 66899998742 22 2234444332110 12346899999999999999999865433 346889
Q ss_pred cEE--EeCChhHHHHHHHH---HhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 121 RIV--MSGGATGAHETVAF---CLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 121 ~i~--it~G~~~al~~~~~---~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
+|+ .|.|+++++..++. ++++|||+|++++|+|+.|...++.. |++++++|+.++++|.+|++.+++++++.
T Consensus 97 ~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~l~~~~~~~~d~~~l~~~~~~~-- 173 (404)
T PTZ00376 97 RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSA-GLNVKEYRYYDPKTKGLDFDGMLEDLRTA-- 173 (404)
T ss_pred eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCceeeccccCcccCCcCHHHHHHHHHhC--
Confidence 998 59999999988875 67899999999999999999999986 99999999955556899999999998642
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCCeEEEEe
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
.+++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|.+. ..+.++..+.. ..+++|+++
T Consensus 174 -~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~-----~~~~vi~i~ 247 (404)
T PTZ00376 174 -PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAE-----RGVEFLVAQ 247 (404)
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHh-----cCCcEEEEE
Confidence 12456778899999999999999999999999999999999999999877430 12234444432 346899999
Q ss_pred cCccccCCCCceEEEEE--ecChHHHH----HHHHh-hh-cCCCChHHHHHHHHhcCChhHHHH---HHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIY--SYNDQVVS----CARKM-SS-FGLVSSQTQHLIATMLSDDQFVEK---FIAESAKRIAERH 343 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li--~~~~~l~~----~~~~~-~~-~~~~s~~~q~~~~~~l~~~~~~~~---~~~~~~~~l~~~~ 343 (483)
||||.||++|+|+||++ ..++.+.+ .+.+. .. ++.+++++|.+++.++.++++.+. ++++.++.+++++
T Consensus 248 SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r 327 (404)
T PTZ00376 248 SFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMR 327 (404)
T ss_pred eCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999984 22444332 22222 22 334567899999999988654333 3556678899999
Q ss_pred HHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCC
Q 011570 344 KAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMD 419 (483)
Q Consensus 344 ~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~ 419 (483)
+.+.+.|++.+ +.+..|+||+|+|++++. +++.+|++++||.+.|| + |++++..+
T Consensus 328 ~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~-----------~~~~~L~~~~~v~v~p~--------~--Ris~~~~~ 386 (404)
T PTZ00376 328 QLLYDELKALGSPGDWEHIINQIGMFSFTGLTK-----------EQVERLIEKYHIYLLDN--------G--RISVAGLT 386 (404)
T ss_pred HHHHHHHHhcCCCCcccccccCceEEEecCCCH-----------HHHHHHHHhCCEeecCC--------C--eEEEeccC
Confidence 99999999875 456678999999998852 67889999999999987 1 99997679
Q ss_pred HHHHHHHHHHHHHHHH
Q 011570 420 DRTMEIALSRITSFML 435 (483)
Q Consensus 420 ~e~l~~~l~~L~~~l~ 435 (483)
.++++.++++|++++.
T Consensus 387 ~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 387 SKNVDYVAEAIHDVVR 402 (404)
T ss_pred HHhHHHHHHHHHHHHh
Confidence 9999999999998865
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=378.44 Aligned_cols=327 Identities=18% Similarity=0.299 Sum_probs=261.8
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++++|+.|+|++. ++.+.+.+.+.. .....|++ .|.++||+++|++++ +++++|+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~I~ 86 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAA-------------ERVHSYPK-ASHADLTAALADRWD--------VSPEQVW 86 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHH-------------hhhhcCCC-CCHHHHHHHHHHHhC--------CCcceEE
Confidence 457899999999985 444555554311 12357875 678999999999985 6899999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++.++++|||.|++++|+|+.|....... |.+++.++++.+++|.++++.+++... ++++|
T Consensus 87 it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~-g~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~k~i 158 (357)
T PRK14809 87 LANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYH-HGEVREYPVSKADDFEQTADTVLDAYD-------GERIV 158 (357)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEEecccCcCCCcCHHHHHHhhc-------CCcEE
Confidence 9999999999999999999999999999999887777765 999999998766678888887766542 57899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++||||||||.++|.+++++|+++|++ +++||+||+|.++.+.. +...... ..+++++++||||.||++
T Consensus 159 ~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~-----~~~~~~~-----~~~~vi~~~SfSK~~~~~ 227 (357)
T PRK14809 159 YLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERP-----SAVALVE-----ERDDVAVLRTFSKAYGLA 227 (357)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCc-----hhHHHHh-----hCCCEEEEecchhHhcCc
Confidence 999999999999999999999999875 78999999999865432 2222222 347899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g 363 (483)
|+|+||++++ +.+.+.+.+....+.+++++|.++..++.+.+ ++++.++.++++++++.+.|...++ +.+|
T Consensus 228 GlRiG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~----~~~g 298 (357)
T PRK14809 228 GLRLGYAVVP-EEWADAYARVNTPFAASELACRAGLAALDDDE----HVERTVETARWAREYIREELDAPTW----ESAG 298 (357)
T ss_pred chhheeeecC-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHhcCccC----CCCC
Confidence 9999999994 55666665555556688899999888887644 4666777888899999999875432 4667
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+|+|++++. ..++++.+ +++||.|+||+.|+. ++++||+++ +++++++++++|+++++
T Consensus 299 ~f~~~~~~~---------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRls~~--~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 299 NFVLAEVGD---------ASAVAEAA-QERGVIVRDCTSFGL--PECIRITCG--TREETERAVEVLNEVLA 356 (357)
T ss_pred CEEEEECCC---------HHHHHHHH-HHCCEEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhc
Confidence 899998852 23666665 567999999999863 579999997 67899999999998875
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=371.01 Aligned_cols=315 Identities=15% Similarity=0.247 Sum_probs=251.0
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
.+|+|+.|||++.. ......||++. ..+||+++|++++ +++++|++|+
T Consensus 17 ~~i~l~~Nenp~~~-----------------------~~~~~~Yp~~~-~~~lr~~ia~~~~--------~~~~~I~it~ 64 (332)
T PRK06425 17 RIIDFSANINDFMD-----------------------IGDISIYPEIS-YTDIEDQIKIYTQ--------GLKIKVLIGP 64 (332)
T ss_pred CEEEeccccCCCcC-----------------------hhhcccCcCcC-HHHHHHHHHHHhC--------CCcceEEECC
Confidence 56899999999841 01346798764 7999999999987 5799999999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~ 206 (483)
|+++++..++. ++++|+ |++++|+|+.|...++.. |++++.+|+++ +.+|.+.+++ .++++|++|
T Consensus 65 Gs~~~l~~~~~-~~~~~~-vv~~~P~y~~y~~~~~~~-G~~v~~vp~~~---~~~~~~~l~~---------~~~k~v~l~ 129 (332)
T PRK06425 65 GLTHFIYRLLS-YINVGN-IIIVEPNFNEYKGYAFTH-GIRISALPFNL---INNNPEILNN---------YNFDLIFIV 129 (332)
T ss_pred CHHHHHHHHHH-HhCCCc-EEEeCCChHHHHHHHHHc-CCeEEEEeCCc---ccCcHHHHhh---------cCCCEEEEe
Confidence 99999999997 467775 667799999999999986 99999999864 3456544432 278999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCce
Q 011570 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR 286 (483)
Q Consensus 207 ~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR 286 (483)
|||||||.+++.+++++|+++|++++++||+||+|.++.+.. . .+...+.. ..+++|+++||||+||+||+|
T Consensus 130 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~-~--~~~~~~~~-----~~~~vi~~~SfSK~~~l~GlR 201 (332)
T PRK06425 130 SPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR-A--EEDVLLNR-----SYGNVIIGRSLTKILGIPSLR 201 (332)
T ss_pred CCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc-c--hhHHHHhc-----cCCCEEEEeecHHhcCCchhh
Confidence 999999999999999999999999999999999999876543 2 34444443 457999999999999999999
Q ss_pred EEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEE
Q 011570 287 VGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFL 366 (483)
Q Consensus 287 iG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~ 366 (483)
+||+++ ++.+.+.+.+....+.++.+++.++. ... .+.++++.++.++++++++.+.|+++|+.+..+.+|+|+
T Consensus 202 iGy~v~-~~~li~~l~~~~~~~~~~~~~~~~l~----~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~g~f~ 275 (332)
T PRK06425 202 IGYIAT-DDYNMKISRKITEPWSVCDPAIDFIR----SID-LDYVAKHSLDIMENERSYLINNLEAMGFRAAGDPSANFI 275 (332)
T ss_pred heeeec-CHHHHHHHHHcCCCCccCHHHHHHHH----Hhh-hHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCceEE
Confidence 999999 55666666665555555555443322 222 244567778899999999999999999887654566799
Q ss_pred eeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 367 WMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 367 ~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
|++++. ..++++.+++ +||.|+||+.|+..+++|+||+++ ++++++.++++|++++
T Consensus 276 ~~~~~~---------~~~~~~~l~~-~gi~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 331 (332)
T PRK06425 276 TFMIPD---------AHDFYSYLLK-NGILVRLLDDYECLGEQYIRIAIR--RRSFNIKLVNALRNFL 331 (332)
T ss_pred EEEcCC---------HHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 999862 2367777775 599999999997555689999998 7889999999998765
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=373.97 Aligned_cols=333 Identities=19% Similarity=0.271 Sum_probs=255.9
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.+.++++|+.++|+++ ++.+.+.+.+. ......|+++ +..+||++||+|++ +++++|
T Consensus 20 ~~~~~i~l~~~~n~~~~~~~~~~a~~~~-------------~~~~~~Y~~~-~~~~Lr~aia~~~~--------v~~~~I 77 (360)
T PRK07392 20 PPDAILDFSASINPLGPPESVIAAIQSA-------------LSALRHYPDP-DYRELRLALAQHHQ--------LPPEWI 77 (360)
T ss_pred CcccEEEeCCcCCCCCCCHHHHHHHHHH-------------HHHhhcCCCc-CHHHHHHHHHHHhC--------cChhhE
Confidence 3457899999999986 45555555431 1124579876 46899999999984 689999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCc---ccCHHHHHHHHHHHHhcCCc
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDF---KVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~---~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|+|+++++.+++.++. +||.|++++|+|+.|...++.. |++++++++++++++ ..+++.+++.. .+
T Consensus 78 ~it~G~~~~i~~~~~~l~-~g~~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------~~ 148 (360)
T PRK07392 78 LPGNGAAELLTWAGRELA-QLRAVYLITPAFGDYRRALRAF-GATVKELPLPLDQPSPGLTLRLQTLPPQL-------TP 148 (360)
T ss_pred EECCCHHHHHHHHHHHhC-CCCeEEEECCCcHHHHHHHHHc-CCeEEEEecccccCCcccccCHHHHHHhc-------cC
Confidence 999999999999998865 6899999999999999999986 999999999866654 24555554332 26
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++++++|||||||.+++++++.+++ +++++ +|+||+|.++.+++ . ..+...... ..+++|+++||||.
T Consensus 149 ~~~~~l~nP~NPTG~~~~~~~l~~l~---~~~~~-~IiDE~y~~~~~~~-~-~~s~~~~~~-----~~~~vi~i~S~SK~ 217 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWSREAILPLL---EQFAL-VVVDEAFMDFLPPD-A-EQSLIPCLA-----EYPNLIILRSLTKF 217 (360)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHH---HHCCE-EEEECchhhhccCc-c-ccchHHHhh-----cCCCEEEEEechhh
Confidence 78999999999999999977665554 56775 66799999976654 2 234443333 35789999999999
Q ss_pred cCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee
Q 011570 280 MGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL 358 (483)
Q Consensus 280 ~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~ 358 (483)
||++|+|+||++++ +.+.+.+......+.++.++|.++..++.+..+ .++.++.++++++.+.+.|+++ |+.+.
T Consensus 218 ~~l~GlRiG~~v~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~ 292 (360)
T PRK07392 218 YSLPGLRLGYAIAH-PDRLQRWQQWRDPWPVNGLAAAAAIAALADRDF----QQQTWAWLPPAREALFQGLASLPGLTPL 292 (360)
T ss_pred hcCCchheeeeeCC-HHHHHHHHhhCCCCCCCHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHhCCCcEEC
Confidence 99999999999995 555555655555567899999999999987654 4445567888899999999887 77766
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+ .+++|+|++++. +..+++..+++++||.|.||..|+..+++|+||+++ +.++.+.+.+.|++++
T Consensus 293 ~-~~~~fl~~~~~~--------~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~~~l~~al~~~~ 357 (360)
T PRK07392 293 P-SAANFLLVQSQG--------SALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR--TEAENQRLLEALAAIL 357 (360)
T ss_pred C-CCCCEEEEEcCC--------CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC--CHHHHHHHHHHHHHHh
Confidence 5 677899998863 134778888888899999999997656789999998 4444555555555544
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=374.11 Aligned_cols=334 Identities=17% Similarity=0.295 Sum_probs=265.9
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++++|+.|+|+++ ++.+.+++.+.. .....|++. +..+||++||++++ +++++|+
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~-------------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~ 76 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNL-------------DCAERYPDV-EYRHLHQALARHHQ--------VPASWIL 76 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHH-------------HhcccCcCc-cHHHHHHHHHHHhC--------cChhhEE
Confidence 456799999999986 455555554311 123468764 68999999999985 6899999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.++ .+|+ +++++|+|..|...++.. |++++.+|++++++|.+| +.+++.+. +++|+|
T Consensus 77 it~Ga~~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~-~~~~~~~~------~~~k~v 146 (356)
T PRK08056 77 AGNGETESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQV-GCEIRRYSLREADGWQLT-DAILEALT------PDLDCL 146 (356)
T ss_pred ECCCHHHHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHc-CCeEEEEecccccCCCcc-HHHHHhcc------CCCCEE
Confidence 9999999999999887 6776 788899999998888876 999999999766677777 34445443 378999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+.. ..+.+ ... ..+++++++||||.||++
T Consensus 147 ~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~~~~---~~~-----~~~~~i~~~S~SK~~~~~ 217 (356)
T PRK08056 147 FLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE-TGFIP---QLA-----DNPHLWVLRSLTKFYAIP 217 (356)
T ss_pred EEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcc-hHHHH---Hhc-----cCCCEEEEEechhhccCc
Confidence 999999999999999999999999999999999999999875543 22222 222 246899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~ 362 (483)
|+|+||++++++.+.+.+.+....+.++.++|.++..++.+..+ .++.++.++++++++.+.|+++ |+.+.++ +
T Consensus 218 G~RiG~~v~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~ 292 (356)
T PRK08056 218 GLRLGYLVNSDDAAVARMRRQQMPWSINAFAALAGEVILQDRAY----QQATWQWLAEEGARFYQALCALPLLTVWPG-R 292 (356)
T ss_pred chhheeeecCCHHHHHHHHHhCCCCchhHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-C
Confidence 99999999865566666655555566888899998888876554 5677788899999999999887 7777666 5
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|+|+|++++.. ..++++.|++ +||.|++|..|....++|+||+++ ++++.+.++++|+++++
T Consensus 293 ~~~~~~~~~~~--------~~~~~~~l~~-~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 293 ANYLFLRCERP--------DIDLQRALLT-QRILIRSCANYPGLDSRYYRVAIR--SAAENERLLAALRNVLT 354 (356)
T ss_pred CcEEEEEcCCC--------hHHHHHHHHH-CCeEEEECCCCCCCCCCEEEEEEc--CHHHHHHHHHHHHHHHc
Confidence 68999998731 2367777774 699999999996555679999998 77889999999987654
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=377.61 Aligned_cols=282 Identities=21% Similarity=0.375 Sum_probs=234.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhhcC
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
...|++..|.++||++||+|+.+.+| +.+++++|++|+|+++++..++.+++ +|||.|++++|+|+.|...+... |
T Consensus 100 ~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~-g 176 (407)
T PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLL-G 176 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHc-C
Confidence 56799999999999999999988766 56789999999999999999999987 79999999999999999999886 9
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
+++++++++++.+|.+|++.|++++++...++.++|+++++|||||||.+++.+++++|+++|++||++||+||+|.++.
T Consensus 177 ~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 177 GTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999877789999999999997543344478999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchHHHhhhhccc--cCCCeEEEEecCcccc-CCCCceEEEEEe--cChHHHHHHHHhh-hcCCCChHHHHHHH
Q 011570 246 FTKESSFVSIAEIIDQDIA--CNRNLIHIVYSLSKDM-GFPGFRVGIIYS--YNDQVVSCARKMS-SFGLVSSQTQHLIA 319 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~--~~~~~vi~~~S~SK~~-g~~GlRiG~li~--~~~~l~~~~~~~~-~~~~~s~~~q~~~~ 319 (483)
|++...+.|+.++...+.. ...+++|+++||||+| |++|||+||+++ .++.+.+.+.+.. ..+.++.++|.++.
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~~~~~~~~~~Q~aa~ 336 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMG 336 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhcccCCCCcHHHHHHH
Confidence 8752245676654321100 0135899999999998 899999999995 2555655555543 33557889999999
Q ss_pred HhcCChh----HH---HHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecC
Q 011570 320 TMLSDDQ----FV---EKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 320 ~~l~~~~----~~---~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~ 371 (483)
+++.... .+ .+..++..+.+++|++.+.+.|.++ |+.+..|+|+||+|++++
T Consensus 337 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 337 LMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred HHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 9997531 11 2223456789999999999999998 999999999999998665
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=375.37 Aligned_cols=341 Identities=18% Similarity=0.230 Sum_probs=263.9
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.+++|+.|+|+++ ++.+.+++.+.... ......|++ .|.++||++||+|+++.++.++.+++++|++|
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~Y~~-~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it 97 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQ----------GIESNRYPD-GGHEALKQAIAEYVNESAAGSSQITPANISVG 97 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh----------cccccCCCC-CchHHHHHHHHHHhCccccccCCCCHHHEEEc
Confidence 4789999999986 45566655431100 001346865 69999999999999977643466899999999
Q ss_pred CChhHHHHHHHHHhcCCCC-eEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 126 GGATGAHETVAFCLADPGD-AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd-~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
+|+++++..++.+++.+|| .|++++|+|+.|...++.. |++++.+++++ ++|.+|+++|++++.+.. ..++|+|+
T Consensus 98 ~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~--~~~~k~i~ 173 (374)
T PRK02610 98 NGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTL-GIPVVRVGRDP-ETFEIDLAAAQSAIEQTQ--NPPVRVVF 173 (374)
T ss_pred CChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEecCCc-ccCCCCHHHHHHHHHhhc--CCCceEEE
Confidence 9999999988888888886 8999999999999998886 99999999864 458999999999886421 13789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+||||||||.+++.++++++++++ ++++||+||+|.++.+ . ..+..+. ..+++|+++||||+||+||
T Consensus 174 l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~---~--~~~~~~~------~~~~~ivi~SfSK~~g~~G 240 (374)
T PRK02610 174 VVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ---T--TLVGELA------QHPNWVILRTFSKAFRLAA 240 (374)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc---c--chHHHHh------cCCCEEEEEecchhccCcc
Confidence 999999999999999999999876 4899999999988532 1 1222232 2367889999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g 363 (483)
+|+||+++ ++.+.+.+......+.+++++|.++..++.+.+ .+.+..+..+++ ++.+.+.|+.+ ++.+. |++|
T Consensus 241 lRiG~~v~-~~~l~~~l~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~~~~~~~~-r~~l~~~L~~~~~~~~~-p~~g 314 (374)
T PRK02610 241 HRVGYAIG-HPELIAVLEKVRLPYNLPSFSQLAAQLALEHRQ---ELLAAIPEILQE-RDRLYQALQELPQLRVW-PSAA 314 (374)
T ss_pred cceeeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH---HHHHHHHHHHHH-HHHHHHHHHhCCCcEeC-CCcc
Confidence 99999998 566666666655556689999999999988643 344555545444 67788888876 67654 6778
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|+|++++...+ ..+++..+ .++||.|+++ ++++||+++ +++++++++++|++++++.
T Consensus 315 ~f~~~~l~~~~~------~~~~~~~l-~~~gi~v~~~-------~~~lRls~~--~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 315 NFLYLRLSQDAA------LAALHQAL-KAQGTLVRHT-------GGGLRITIG--TPEENQRTLERLQAALTQL 372 (374)
T ss_pred eEEEEeCCCCCC------HHHHHHHH-HHCCEEEEeC-------CCeEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 999999985322 23666665 4679999864 368999998 4678999999999988654
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-46 Score=373.61 Aligned_cols=335 Identities=23% Similarity=0.374 Sum_probs=263.4
Q ss_pred CCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCC
Q 011570 43 KNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPD 120 (483)
Q Consensus 43 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~ 120 (483)
.++.++++|+.+++..+ ++.+.+.+.... ....|+++.|.++||+++|+|+.+.+| ++ ++++
T Consensus 24 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~--------------~~~~Y~~~~G~~~lr~~ia~~l~~~~~--~~~~~~~ 87 (364)
T PRK07865 24 AHPDGIVDLSVGTPVDPVPPVIQEALAAAA--------------DAPGYPTTAGTPELREAIVGWLARRRG--VTGLDPA 87 (364)
T ss_pred hcCCCEEEcCCCCCCCCCCHHHHHHHHHHH--------------hhCCCCCccCCHHHHHHHHHHHHHHcC--CCCCCcc
Confidence 34456799999976544 355555554311 124799999999999999999998776 54 7899
Q ss_pred cEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 121 RIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
+|++|+|+++++..++.++ +++||.|++++|+|+.|...++.. |++++.++. +++++. .+
T Consensus 88 ~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~---------~~~l~~---------~~ 148 (364)
T PRK07865 88 AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLA-GATVVRADS---------LTELGP---------QR 148 (364)
T ss_pred cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhc-CCEEEecCC---------hhhCCc---------cc
Confidence 9999999999999998888 799999999999999999888876 999888741 222221 26
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.+.+ .. .+..... ......+++|+++||||.
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~-~~~~~~~--~~~~~~~~~i~~~S~SK~ 224 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDA-EP-VSILDPR--VCGGDHTGLLAVHSLSKQ 224 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCC-CC-Ccccccc--ccCCccceEEEEeechhc
Confidence 7999999999999999999999999999999999999999999876654 22 2221110 000024789999999999
Q ss_pred cCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 280 MGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 280 ~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
||++|+|+||++++ +.+.+.+.... ..+.++++.|.++..++.+.. ++++.++.++++++.+.+.|++.|+.+
T Consensus 225 ~~~~GlRiG~i~~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~ 299 (364)
T PRK07865 225 SNLAGYRAGFVAGD-PALVAELLEVRKHAGMMVPAPVQAAMVAALGDDA----HVREQRERYARRRAVLRPALEAAGFRV 299 (364)
T ss_pred cCCCceeeEEEecC-HHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999984 55555554433 234578899999999998744 356777888999999999999999988
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
..++||+|+|++++.. ..+++..+ .++||.|.||..|+...++++||+++. +++++++++++|+
T Consensus 300 ~~~~~~~~~~~~~~~~--------~~~~~~~l-~~~gv~v~pg~~f~~~~~~~iRi~~~~-~~~~~~~~~~~l~ 363 (364)
T PRK07865 300 DHSEAGLYLWATRGED--------CWDTVAWL-AERGILVAPGDFYGPAGAQHVRVALTA-TDERIAAAVERLA 363 (364)
T ss_pred cCCCccEEEEEeCCCC--------HHHHHHHH-HHCCEEEeCccccCcCCCCEEEEEecC-CHHHHHHHHHHhh
Confidence 8899999999987421 12455555 467999999998875567899999984 7899999999985
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=381.66 Aligned_cols=356 Identities=17% Similarity=0.247 Sum_probs=267.2
Q ss_pred CCcccccchhhhhcHH-HHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHH-HHHhhhCCCCCcCCC--c
Q 011570 46 NGVIQMGLAENLLCHE-LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAK-FMGKVRGNRITFDPD--R 121 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~-~~~~~~g~~~~~~~~--~ 121 (483)
.++|+++.+++.++++ .+.++.... . ..+|+++.|..++++++++ |+.+.++. ....++ +
T Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~-------------~--~~~Y~~p~g~~~~~e~iv~~y~~~~~~~-~~~~~~~~~ 157 (521)
T TIGR03801 94 RDIISYVIDQLGFDPDAFLYEMCDGI-------------I--GDNYPVPDRMLPHSEKIVHQYLIQEMCG-NKPPPGEFD 157 (521)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHh-------------h--cCCCCCCCCCHHHHHHHHHHHHHhhccC-CCCCCCcCe
Confidence 3468888888777643 343333321 0 1258877788888888874 65654431 112334 8
Q ss_pred EEEeCChhHHHHHHHHH-----hcCCCCeEEEeCCCCcChHHHHhhh-cCcEEEEeecCCCCC-----cccCHHHHHHHH
Q 011570 122 IVMSGGATGAHETVAFC-----LADPGDAFLVPTPYYPGFDRDLRWR-TGVQLVPVVCDSSND-----FKVTMEALEAAY 190 (483)
Q Consensus 122 i~it~G~~~al~~~~~~-----l~~~gd~Vlv~~P~y~~~~~~~~~~-~G~~~~~v~~~~~~~-----~~~d~~~l~~~i 190 (483)
|++|+|+++++..++.+ +++|||+|++++|+|+.|...+... .|.++++++.+++.+ |.+|++++++++
T Consensus 158 V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~ 237 (521)
T TIGR03801 158 LFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLR 237 (521)
T ss_pred EEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhc
Confidence 99999999999999887 7899999999999999999886653 378888888765433 999999998865
Q ss_pred HHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCCCcchHHHhhhhccccCCC
Q 011570 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268 (483)
Q Consensus 191 ~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~ 268 (483)
. +++|+|+++|||||||.+++.+++++|+++|++| +++||+||+|.++.+ .+.|+.... .+
T Consensus 238 ~------~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~sl~~~~-------~~ 300 (521)
T TIGR03801 238 D------PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD----DFRSLFAEL-------PY 300 (521)
T ss_pred C------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc----cccchhhhC-------CC
Confidence 4 3899999999999999999999999999999986 999999999998543 234554442 36
Q ss_pred eEEEEecCccccCCCCceEEEEEecChHHHH------------HH------------------------HHhhh--cCCC
Q 011570 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS------------CA------------------------RKMSS--FGLV 310 (483)
Q Consensus 269 ~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~------------~~------------------------~~~~~--~~~~ 310 (483)
++|+++||||.||++|||+||++++++.+.+ .+ ++... ...+
T Consensus 301 ~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~ 380 (521)
T TIGR03801 301 NTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGL 380 (521)
T ss_pred CEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCC
Confidence 8999999999999999999999997553211 11 11111 1335
Q ss_pred ChHHHH-----HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---ccCh---
Q 011570 311 SSQTQH-----LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK---EQTY--- 379 (483)
Q Consensus 311 s~~~q~-----~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~---~~~~--- 379 (483)
+++.|. ++.+++... +.+.++.++.+++|++.+.+.|. ..+...++.|+||+|++++.... +..+
T Consensus 381 s~p~Q~q~al~a~~all~~~---~~y~~~~~~~~~~R~~~l~~~Lg-~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~ 456 (521)
T TIGR03801 381 STPQQVQMALFSLFALMDKE---NAYKAETKDICRRREKLLFRGLG-LPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSY 456 (521)
T ss_pred CcHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHhcC-CCCcCCCCCeEEEEEeehHHHHHHhcchHHHHH
Confidence 667665 344555432 45678888999999999999882 23334678999999999985321 0000
Q ss_pred ----HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 380 ----EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 380 ----~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.++.+++.+|++++||.+.||..|+.. .+++|||++..+++++.++.++|++++++..+
T Consensus 457 l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~-~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~ 519 (521)
T TIGR03801 457 LKKNYSPVDVLFRLAEETGIVLLPGGGFGGP-EWSVRVSLANLNEYDYAEIGRAIRKILDEYYE 519 (521)
T ss_pred HhccCCHHHHHHHHHHhCCEEEeCchhcCCC-CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 125689999999999999999999853 56899999867899999999999999987654
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-46 Score=373.66 Aligned_cols=327 Identities=19% Similarity=0.260 Sum_probs=261.2
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.|+|+++ ++.+.+.+... .....|+++ +..+||++||++++ +++++|+
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~--------------~~~~~Yp~~-~~~~lr~~ia~~~~--------~~~~~I~ 107 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNM--------------KFPYVYPDP-ESRRLRAALAEDSG--------LESENIL 107 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhh--------------HhhccCCCC-CHHHHHHHHHHHhC--------cChhhEE
Confidence 457899999999985 45555555431 123458765 68999999999986 5789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|++++|+|+.|...++.. |++++.+++++ +|.+|++.+++++.. .++++|
T Consensus 108 ~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~~~v 179 (380)
T PLN03026 108 VGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVN-GAEVIKVPRTP--DFSLDVPRIVEAVET-----HKPKLL 179 (380)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecCC--CCCcCHHHHHHHHhc-----cCCcEE
Confidence 9999999999999999999999999999999888877775 99999999853 578999999998842 278999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++.+|++.+ ++||+||+|.++.+.. +...... ..+++|+++||||.||++
T Consensus 180 ~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~DeaY~~~~~~~-----~~~~~~~-----~~~~viv~~SfSK~~gla 245 (380)
T PLN03026 180 FLTSPNNPDGSIISDDDLLKILELP----ILVVLDEAYIEFSTQE-----SRMKWVK-----KYDNLIVLRTFSKRAGLA 245 (380)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEECcchhhcCCc-----chHHHHH-----hCCCEEEEecchHhhcCc
Confidence 9999999999999999999998753 8999999999864432 1122222 358899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~ 362 (483)
|+|+||++++ +.+.+.+.+....+.++.++|.++.++|.+.++ +++.++.++++++++.+.|++++ +.+ .+.+
T Consensus 246 GlRiGy~~~~-~~~i~~l~~~~~~~~~~~~~q~aa~~aL~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~ 319 (380)
T PLN03026 246 GLRVGYGAFP-LSIIEYLWRAKQPYNVSVAAEVAACAALSNPKY----LEDVKNALVEERERLFGLLKEVPFLEP-YPSD 319 (380)
T ss_pred cccceeeecC-HHHHHHHHHhcCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCC
Confidence 9999999994 556666666665667899999999999987544 56777888999999999999885 444 5667
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
++|+|++++...+ ..++++.|+ ++||.|++|..++ .++++|||++ ++++++.++++|+++
T Consensus 320 ~~f~~~~~~~~~~------~~~~~~~l~-~~gI~v~~~~~~~--~~~~lRis~~--~~~~~~~l~~al~~~ 379 (380)
T PLN03026 320 ANFILCRVTSGRD------AKKLKEDLA-KMGVMVRHYNSKE--LKGYIRVSVG--KPEHTDALMEALKQL 379 (380)
T ss_pred CeEEEEECCCCCC------HHHHHHHHH-HCCeEEEECCCCC--CCCEEEEecC--CHHHHHHHHHHHHHh
Confidence 7899999874221 236777777 6799999987632 4679999998 677888888887653
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=374.61 Aligned_cols=334 Identities=19% Similarity=0.297 Sum_probs=268.0
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.|+|++. ++.+.+++.+.. .....|++..| .+||+++|++++ +++++|+
T Consensus 35 ~~~~i~l~~~~~~~~~~~~~~~al~~~~-------------~~~~~Y~~~~g-~~lr~~ia~~~~--------~~~~~i~ 92 (371)
T PRK05166 35 VPRIAKLGSNENPLGPSPAVRRAFADIA-------------ELLRLYPDPQG-RALREAIAARTG--------VPADRII 92 (371)
T ss_pred CcceEEcCCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCCcH-HHHHHHHHHHhC--------cCHHHEE
Confidence 347899999999874 455666554311 13457999888 599999999875 5789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|+++.|+|+.+...++.. |.+++.++++. ++.+|++++++++.+ ++++|
T Consensus 93 ~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~~~~~l~~~~~~------~~~~v 163 (371)
T PRK05166 93 LGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMM-GARVERVTVTP--DLGFDLDALCAAVAR------APRML 163 (371)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHhhhc------CCCEE
Confidence 9999999999999999999999999999999998888876 99999999864 467999999998864 67899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++ +++||+||+|.++.++. .+.+....... ..+++|+++||||.||++
T Consensus 164 ~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~--~~~~~~~~~~~----~~~~vi~i~SfSK~~~l~ 236 (371)
T PRK05166 164 MFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAGD--DYPSALTLLKA----RGLPWIVLRTFSKAYGLA 236 (371)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCc--CcccHHHHHhh----cCCCEEEEeechHhhhcc
Confidence 999999999999999999999999874 88999999999876543 23344433221 236899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g 363 (483)
|+|+||++++++.+.+.+.+....+.++.++|.++.+++.+.++ +++.++.++++++.+.+.|++.|+.+.+ .+|
T Consensus 237 GlRiG~~i~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~p-~~g 311 (371)
T PRK05166 237 GLRVGYGLVSDPELVGLLDRVRTPFNVNGAAQAAALAALDDEEH----LAKGVALALAERERLKKELAEMGYRIAP-SRA 311 (371)
T ss_pred hhheeeeecCCHHHHHHHHHhccCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCcCeeCC-CcC
Confidence 99999998767777777766665666899999888888876554 5666677888889999999988887654 556
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+|+|++++.. ..++++.+++ +||.|+||..++ .++++||+++ +.++.+.+++.|+.++
T Consensus 312 ~fl~~~~~~~--------~~~l~~~l~~-~gi~v~p~~~~~--~~~~iRi~~~--~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 312 NFLFFDARRP--------ASAVAEALLR-QGVIVKPWKQPG--FETFIRVSIG--SPEENDHFVAALDKVL 369 (371)
T ss_pred CEEEEeCCCC--------HHHHHHHHHH-CCeEEecCCCCC--CCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 8999997631 2367777775 599999997654 4689999998 5667777777776654
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-46 Score=372.24 Aligned_cols=336 Identities=22% Similarity=0.368 Sum_probs=263.3
Q ss_pred CCCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cC
Q 011570 41 PTKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FD 118 (483)
Q Consensus 41 ~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~ 118 (483)
..+++.++++|+.+++..+ ++.+.+.+.+. .....|+++.|.++||+++++|+.+++| ++ ++
T Consensus 16 ~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~--------------~~~~~Y~~~~G~~~lr~~ia~~~~~~~~--~~~~~ 79 (357)
T TIGR03539 16 AASHPDGIVDLSVGTPVDPVPPLIRAALAAA--------------ADAPGYPQTWGTPELREAIVDWLERRRG--VPGLD 79 (357)
T ss_pred hhhCCCCeEEccCCCCCCCCCHHHHHHHHHH--------------HhhCCCCcccCCHHHHHHHHHHHHHhcC--CCCCC
Confidence 3455677899999876554 34455554431 1235799999999999999999988776 54 78
Q ss_pred CCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcC
Q 011570 119 PDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 197 (483)
+++|++|+|+++++..++.++ +++||.|++++|+|+.+...++.. |++++.++ +++.+..
T Consensus 80 ~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~---------~~~~l~~--------- 140 (357)
T TIGR03539 80 PTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLA-GATPVAAD---------DPTELDP--------- 140 (357)
T ss_pred cCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhc-CCEEeccC---------ChhhcCc---------
Confidence 999999999999999999888 799999999999999998888775 99988764 2222221
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
.++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|.+ .. .+... ........+++|+++|||
T Consensus 141 ~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~-~~~~~--~~~~~~~~~~vi~~~S~S 216 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEG-RP-VSILD--PRVCGGDHTGLLAVHSLS 216 (357)
T ss_pred cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCC-CC-cccee--cccCCCccccEEEEeccc
Confidence 267999999999999999999999999999999999999999998876654 32 22111 100000246899999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI 355 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi 355 (483)
|.||++|+|+||++++ +.+.+.+..... .+.++++.|.++..++.+..+ +++.+..++++++++.+.|.+.|+
T Consensus 217 K~~~~~G~R~G~~i~~-~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~L~~~g~ 291 (357)
T TIGR03539 217 KRSNLAGYRAGFVAGD-PALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGH----VAEQKARYAARRAQLKPALEKAGF 291 (357)
T ss_pred cccCCCceeEEEEecC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999984 555555544332 245788999999999976443 566778889999999999998899
Q ss_pred eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 356 GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 356 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
.+.+|.||+|+|++++.. ..++...| .++||.|.||..|+...++++||+++. +++++++++++|
T Consensus 292 ~~~~p~~~~~~~~~~~~~--------~~~~~~~l-~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~~i~~~~~~l 356 (357)
T TIGR03539 292 RIDHSEAGLYLWATRGED--------AWDTVDRL-AELGILVAPGDFYGPAGSQHVRVALTA-TDERIAAAVARL 356 (357)
T ss_pred CCcCCCccEEEEEECCCC--------HHHHHHHH-HhCCEEECCccccCCCCCCeEEEEecC-CHHHHHHHHHhh
Confidence 989999999999998631 22566555 467999999998876557899999985 789999999887
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=377.97 Aligned_cols=358 Identities=18% Similarity=0.274 Sum_probs=264.8
Q ss_pred CCcccccchhhhh-c--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 46 NGVIQMGLAENLL-C--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.++|+|+.+.+.. + .+.+.+++....... ........|+++.|.++||++||+|+.+.+| +.+++++|
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~v~~~~I 100 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASG-------KLTEALGNYDGPQGKDELIEALAALLNERYG--WNISPQNI 100 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCc-------ccccccccCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhE
Confidence 4679999887643 2 234445443311100 0002346799999999999999999988777 56899999
Q ss_pred EEeCChhHHHHHHHHHhcC-----CCCeEEE-eCCCCcChHHHHhhh---cCcEEEEeecCCC-CCcccCHHHHHHHHHH
Q 011570 123 VMSGGATGAHETVAFCLAD-----PGDAFLV-PTPYYPGFDRDLRWR---TGVQLVPVVCDSS-NDFKVTMEALEAAYEK 192 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~-----~gd~Vlv-~~P~y~~~~~~~~~~---~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~ 192 (483)
++|+|+++++.+++.++++ +||.|++ ++|+|+.|...+... .+.....++++.+ .+|.+|++.|+ +.
T Consensus 101 ~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~- 177 (416)
T PRK09440 101 ALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID- 177 (416)
T ss_pred EEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-
Confidence 9999999999999999985 6899999 799999998755422 0122222233322 14789999887 22
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
.++++++++|||||||.+++.+++++|+++|++++++||+||+|.+. +.. ..+.+ .... ..+++|+
T Consensus 178 -----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~-~~~~~---~~~~----~~~~vI~ 243 (416)
T PRK09440 178 -----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPP-FPG-IIFSE---ATPL----WNPNIIL 243 (416)
T ss_pred -----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCC-cchhh---cCcc----ccCCeEE
Confidence 36799999999999999999999999999999999999999999753 211 11111 1110 1478999
Q ss_pred EecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHH-HHHHHHHHHHHHHHh
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAE-SAKRIAERHKAFTWG 349 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~ 349 (483)
++||||. ++||+|+||+++ ++.+.+.+...... ..++.+.|.+++.++.++++ .++..+ .+..++++++.+.+.
T Consensus 244 ~~SfSK~-~~pGlRiG~~i~-~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~ 320 (416)
T PRK09440 244 CMSLSKL-GLPGVRCGIVIA-DEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIAL 320 (416)
T ss_pred Eeccccc-CCCcceEEEEeC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999996 899999999999 45566655554432 45788999999999998776 344433 577788888888888
Q ss_pred hhcC----CceeecCCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC-------CCEEEEEecc
Q 011570 350 LSQV----GIGCLKSNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN-------PGWFRVCFAN 417 (483)
Q Consensus 350 L~~~----gi~~~~~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~-------~~~iRis~~~ 417 (483)
|.+. ++.+..|+||+|+|++++.. .+ +.++...+ +++||.|.||+.|+... .+++||+++.
T Consensus 321 L~~~l~~~~~~~~~p~gg~fiw~~~~~~~~~------~~~~~~~l-~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~ 393 (416)
T PRK09440 321 LRRYLPDEPCLIHKPEGAIFLWLWFKDLPIT------TEELYQRL-KARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ 393 (416)
T ss_pred HHHhcccCCeEEecCCCceEEEEECCCCCCC------HHHHHHHH-HHCCEEEechHhhCCCCccccCCcCceEEEEecC
Confidence 8653 46677899999999999852 21 23666665 46799999999985421 3589999984
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 418 MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 418 ~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+++++++++++|++++++..++
T Consensus 394 -~~~~l~~~i~~l~~~~~~~~~~ 415 (416)
T PRK09440 394 -DDEEIEKGIAILAEEVEKAYAE 415 (416)
T ss_pred -CHHHHHHHHHHHHHHHHHHhhc
Confidence 8899999999999999876554
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=367.97 Aligned_cols=327 Identities=19% Similarity=0.282 Sum_probs=259.9
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
+.++++.|+|+++++.. . ...+..|+++. ..+||++||++++ +++++|++|+
T Consensus 32 ~~~~~~~ne~~~~~~~~-----~--------------~~~~~~Y~~~~-~~~lr~~ia~~~~--------~~~~~I~~t~ 83 (364)
T PRK04781 32 GDVWLNANESAWANPAD-----P--------------DASTRRYPDPQ-PPGLRSALAALYG--------CAPEQLLIGR 83 (364)
T ss_pred CCEEeeCCCCCCCCChh-----h--------------cchhccCCCCC-HHHHHHHHHHHhC--------cChHHEEEeC
Confidence 56899999999875321 0 01346788765 6999999999985 6889999999
Q ss_pred ChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 127 GATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 127 G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+++++..++.+++.+| |.|++++|+|+.|...++.. |.+++++|++ ++++|.+|++++++.+.. .++++|+
T Consensus 84 G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-----~~~~lv~ 157 (364)
T PRK04781 84 GSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQ-NAPLVEVPLVDGADGFHADVPAIVAAALA-----SNAKLVF 157 (364)
T ss_pred CHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCCCccCCCcCHHHHHHHHhc-----cCCeEEE
Confidence 99999999999999999 79999999999888877775 9999999985 345688899988765532 3789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.++++++++.|+ ++++||+||+|.++.+. . +...+.. ..+++|+++||||+||+||
T Consensus 158 l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~--~---~~~~~~~-----~~~~vi~~~SfSK~~gl~G 226 (364)
T PRK04781 158 LCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFSDV--P---SAVGLLA-----RYDNLAVLRTLSKAHALAA 226 (364)
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhcCC--c---chHHHHh-----hCCCEEEEecChhhccccc
Confidence 9999999999999999999999986 47899999999986532 2 2223323 3578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g 363 (483)
+|+||+++ ++.+.+.+.+....+.+++++|.++..++.++.+ . +..+..+.++++++.+.+.|+++ |+....|.+|
T Consensus 227 lRvGy~v~-~~~l~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g 303 (364)
T PRK04781 227 ARIGSLIA-NAELIAVLRRCQAPYPVPTPCAALAEQALSAPAL-A-VTARRVAEVRAERERLHAALAQLPGVRRVYPSQG 303 (364)
T ss_pred ceeeeeeC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccH-H-HHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCC
Confidence 99999998 5667777777766677899999999889987542 2 23445557788999999999888 6653456667
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+|+|++++. ..++.+.+. ++||.|+||..|.. .++|+||+++ ++++++.++++|+++.
T Consensus 304 ~f~~~~~~~---------~~~~~~~l~-~~gI~v~~~~~~~~-~~~~~Ris~~--~~~~~~~l~~al~~~~ 361 (364)
T PRK04781 304 NFLLVRFDD---------AEAAFQALL-AAGVVVRDQRAAPR-LSDALRITLG--TPEQNDRVLAALQRTQ 361 (364)
T ss_pred cEEEEEcCC---------HHHHHHHHH-HCCeEEeeCCCCCC-CCCeEEEeCC--CHHHHHHHHHHHHHHH
Confidence 999999873 124555554 67999999987753 4679999998 6788899888887643
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=368.33 Aligned_cols=328 Identities=20% Similarity=0.218 Sum_probs=258.5
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhc
Q 011570 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 86 ~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~ 164 (483)
...+|+++.|.++||+++++++.+..+ ... .+.++|++|+|+++++.+++.++++|||.|++++|+|+.|...+....
T Consensus 36 ~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~ 114 (388)
T PRK08637 36 EIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRR 114 (388)
T ss_pred cccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhc
Confidence 456899999999999999999876432 111 123689999999999999999999999999999999999998765324
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh-----cCcEEEEcc
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE-----KNIHLVCDE 239 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~-----~~~~iI~De 239 (483)
|.+++++|+..+ ++++|++.++++++.. ..+..++++++|||||||.+++.+++++|+++|++ |+++||+||
T Consensus 115 g~~vv~v~~~~~-~~~~d~~~l~~~~~~~--~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De 191 (388)
T PRK08637 115 GAEIVTYPIFDE-DGGFDTDALKEALQAA--YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDD 191 (388)
T ss_pred CCEEEEecccCC-CCcCCHHHHHHHHHhh--ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecc
Confidence 999999998422 3468999999988621 11244567888999999999999999999998875 899999999
Q ss_pred ccccCccCCCCCcchHH-HhhhhccccCCCeE--EEEecCccccCCCCceEEEEEecC-----hHHHHHHHH-h-----h
Q 011570 240 IYAATVFTKESSFVSIA-EIIDQDIACNRNLI--HIVYSLSKDMGFPGFRVGIIYSYN-----DQVVSCARK-M-----S 305 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~-~l~~~~~~~~~~~v--i~~~S~SK~~g~~GlRiG~li~~~-----~~l~~~~~~-~-----~ 305 (483)
+|.++.|++ ....++. .+.. ..+++ ++++||||.|++||+|+||+++++ +.+.+.+.. . .
T Consensus 192 ~Y~~l~~~~-~~~~~~~~~~~~-----~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (388)
T PRK08637 192 AYFGLFYED-SYKESLFAALAN-----LHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRS 265 (388)
T ss_pred cchhcccCC-ccchhhHHHhhc-----ccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhc
Confidence 999988876 4434432 2322 23564 455799999999999999999743 555555432 1 1
Q ss_pred hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHH
Q 011570 306 SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 306 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~ 381 (483)
..+.++.++|.++..++.++.+ .+++++.+..++++++.+.+.|.+. ++.+.+|++|+|+|++++. . +
T Consensus 266 ~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~-~------~ 337 (388)
T PRK08637 266 NISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKG-V------D 337 (388)
T ss_pred ccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCCh-H------H
Confidence 2346889999999999988765 5667777888999999999888765 5788899999999999973 1 2
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++++.+++++||.+.+. +++++||+++..+++++++++++|++++++.
T Consensus 338 ~~~l~~~l~~~~gv~~~~~------~~~~iRi~~~~~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 338 AEELRVHLLEKYGIGTIAL------NETDLRIAFSCVEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred HHHHHHHHhhhcceEEEec------cCCceEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 3478888887889988742 3568999998778999999999999999764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=369.32 Aligned_cols=344 Identities=27% Similarity=0.458 Sum_probs=275.4
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.+.+.++ ++.+.+.+...... .......|++..|.+++|++++++++..++ ..+++++|++
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~---------~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~--~~~~~~~i~~ 101 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEE---------EDPGLHGYMPNAGYPEVREAIAESLNRRFG--TPLTADHIVM 101 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhc---------CCcCcccCCCCCCCHHHHHHHHHHHHHHhC--CCCCcCcEEE
Confidence 35688888866543 45555555432110 001246798889999999999999998776 4578999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||.|++++|+|..+...++.. |++++.++++++ +|.+|++++++++.+ ++++|+
T Consensus 102 t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~-g~~v~~v~~~~~-~~~~d~~~l~~~~~~------~~~~v~ 173 (394)
T PRK06836 102 TCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNH-GGKLVVVPTDTD-TFQPDLDALEAAITP------KTKAVI 173 (394)
T ss_pred eCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEEecCCc-cCcCCHHHHHhhcCc------CceEEE
Confidence 999999999999999999999999999999999888875 999999998754 478999999998854 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhh------cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINE------KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~------~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
+++||||||.++|.+++++|+++|++ ||++||+||+|.++.|.+ ....++.+ ..+++++++||||
T Consensus 174 ~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~--------~~~~~i~~~S~SK 244 (394)
T PRK06836 174 INSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG-AEVPYIFK--------YYDNSIVVYSFSK 244 (394)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC-CCCCChHH--------ccCcEEEEecchh
Confidence 99999999999999999999999998 899999999999987765 33333332 2368999999999
Q ss_pred ccCCCCceEEEEEecChHHHHH---HHH---hh---hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 011570 279 DMGFPGFRVGIIYSYNDQVVSC---ARK---MS---SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWG 349 (483)
Q Consensus 279 ~~g~~GlRiG~li~~~~~l~~~---~~~---~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 349 (483)
.||+||+|+||++++++ +.+. ... .. ..+.++++.|.++..++.+.. .+..++++++.+.+.
T Consensus 245 ~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~--------~~~~~~~~r~~l~~~ 315 (394)
T PRK06836 245 SLSLPGERIGYIAVNPE-MEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATV--------DVSIYKRNRDLLYDG 315 (394)
T ss_pred hccCcceeeEEEecCHH-HhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChH--------HHHHHHHHHHHHHHH
Confidence 99999999999999543 3221 111 11 123577889999999987632 134577788999999
Q ss_pred hhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHH
Q 011570 350 LSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 350 L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
|+++|+.+.++.||+|+|++++.. + ..+++..+ +++||.|.||..|+. ++++||+++ .+++++++++++
T Consensus 316 L~~~g~~~~~~~gg~~~~~~~~~~-~------~~~~~~~l-~~~gv~v~~g~~f~~--~~~iRi~~~-~~~~~~~~~i~~ 384 (394)
T PRK06836 316 LTELGFECVKPQGAFYLFPKSPEE-D------DVAFCEKA-KKHNLLLVPGSGFGC--PGYFRLSYC-VDTETIERSLPA 384 (394)
T ss_pred HHhCCCEeecCCceEEEEEeCCCC-C------HHHHHHHH-HhCCEEEECchhcCC--CCeEEEEec-CCHHHHHHHHHH
Confidence 998899999999999999998752 1 23566554 567999999999863 579999998 699999999999
Q ss_pred HHHHHHHh
Q 011570 430 ITSFMLKN 437 (483)
Q Consensus 430 L~~~l~~~ 437 (483)
|+++++++
T Consensus 385 l~~~l~~~ 392 (394)
T PRK06836 385 FEKLAKEY 392 (394)
T ss_pred HHHHHHHh
Confidence 99999765
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=370.66 Aligned_cols=328 Identities=18% Similarity=0.288 Sum_probs=264.7
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++++|+.|+|+++ ++.+.+++.+.. ... .|.+..|.++||+++|++++ +++++|++|
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~-------------~~~-~~~p~~g~~~lr~~ia~~~~--------~~~~~i~~t 87 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHL-------------DEL-ALYPDGYAPELRTKVAKHLG--------VDEEQLLFG 87 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHH-------------HHh-hcCCCCcHHHHHHHHHHHhC--------CCHHHEEEC
Confidence 6789999999884 455666554311 122 34455689999999999985 578999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++++..++.+++++||.|++++|+|+.+...+... |.+++.+|++ ++.+|++.+++++.+ +++++++
T Consensus 88 ~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~d~~~l~~~~~~------~~~~v~i 157 (359)
T PRK03158 88 AGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIE-GAEVREVPLK---DGGHDLEAMLKAIDE------QTKIVWI 157 (359)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEEecC---CCCcCHHHHHHhcCC------CCCEEEE
Confidence 99999999999999999999999999999998888775 9999999986 356899999887753 7889999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++.++++.++ +|++||+||+|.++.+.+ .. .+...+.. ..+++++++||||.||++|+
T Consensus 158 ~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~-~~-~~~~~~~~-----~~~~vi~~~S~SK~~g~~Gl 229 (359)
T PRK03158 158 CNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTAE-DY-PDTLPLLE-----KYENLIVLRTFSKAYGLAAL 229 (359)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCCc-cc-ccHHHHHH-----hcCCEEEEEechHhhcCcch
Confidence 999999999999999999998875 699999999999876654 22 23223322 34789999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||+++ ++.+.+.+......+.+++++|.++..++.+.++ .++.++.++++++.+.+.|.+.|+.+.++. |+|
T Consensus 230 RiG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-g~~ 303 (359)
T PRK03158 230 RVGYGIA-SEELIEKLNIARPPFNTTRIAQYAAIAALEDQAF----LKECVEKNAEGLEQYYAFCKEYGLFYYPSQ-TNF 303 (359)
T ss_pred hhehhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeeCCCc-CcE
Confidence 9999999 4566666666555566899999999999987655 455566677888889999988888876554 579
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|++++. + ..++++.|++ +||.|+||+.|+ .++++||+++ +.++++.++++|+++
T Consensus 304 i~~~~~~--~------~~~~~~~l~~-~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 358 (359)
T PRK03158 304 IFVDTGR--D------ANELFEALLK-KGYIVRSGAALG--FPTGVRITIG--LKEQNDKIIELLKEL 358 (359)
T ss_pred EEEECCC--C------HHHHHHHHHH-CCeEEeeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHh
Confidence 9998852 1 2367777774 699999999986 3679999998 789999999999875
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=370.28 Aligned_cols=320 Identities=17% Similarity=0.290 Sum_probs=258.7
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
+.++|+.|||+++++.. +.. .....||+.. ..+|++.+|++++ +++++|++|+
T Consensus 29 ~~~~l~~Nenp~~~~~~---~~~---------------~~~~~Yp~~~-~~~l~~~~a~~~g--------~~~~~I~~~~ 81 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQ---LTQ---------------QTLNRYPECQ-PKAVIENYAAYAG--------VKPEQVLVSR 81 (351)
T ss_pred CceEecCCCCCCCCChh---hcc---------------cccccCCCCC-hHHHHHHHHHHhC--------CCHHHEEEcC
Confidence 45899999999975431 110 2356798765 4899999999876 6899999999
Q ss_pred ChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 127 GATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 127 G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
|+++++.+++.+++++| |.|+++.|+|+.|...++.. |++++.+|+++ +|.+|++.+++++. ++++|++
T Consensus 82 Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~-G~~~~~v~~~~--~~~~d~~~l~~~~~-------~~~lv~l 151 (351)
T PRK01688 82 GADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVEIRTVPTLD--NWQLDLPAIADNLD-------GVKVVYV 151 (351)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHHhcc-------CCcEEEE
Confidence 99999999999999997 99999999999999888876 99999999864 58899999988762 6899999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
||||||||.+++.+++++|++.|++ +.+||+||+|.++ .. . .+...+.. .++++++++||||.||++|+
T Consensus 152 ~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f--~~-~--~s~~~~~~-----~~~n~iv~rSfSK~~glaGl 220 (351)
T PRK01688 152 CSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEF--CP-Q--ASLAGWLA-----EYPHLVILRTLSKAFALAGL 220 (351)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhc--CC-C--CChHHHHh-----hCCCEEEEecchHhhcCHHH
Confidence 9999999999999999999999986 6789999999885 33 2 23344433 45799999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGL 364 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~ 364 (483)
|+||+++ ++.+.+.+.+....+.++.++|.++..+|.+.. .+++++.++.++++++++.+.|+++ |+....|.+++
T Consensus 221 RiGy~i~-~~~~i~~l~~~~~~~~v~~~~~~~a~~~L~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~n 297 (351)
T PRK01688 221 RCGFTLA-NEEVINLLLKVIAPYPLSTPVADIAAQALSPQG--IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETN 297 (351)
T ss_pred HHhHHhC-CHHHHHHHHhccCCCCCCHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCc
Confidence 9999998 566667677766667788888888888887642 2346667778888899999999988 66534455677
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
|+|++++. ..++++.|+ ++||.|+++..|.. .++|+||+++ ++++++.++++|
T Consensus 298 fi~~~~~~---------~~~l~~~L~-~~gi~vr~~~~~~~-~~~~iRis~~--~~~e~~~l~~al 350 (351)
T PRK01688 298 YILARFTA---------SSAVFKSLW-DQGIILRDQNKQPG-LSNCLRITIG--TREECQRVIDAL 350 (351)
T ss_pred EEEEEcCC---------HHHHHHHHH-HCCeEEEECCCcCC-CCCeEEEeCC--CHHHHHHHHHhh
Confidence 99998862 236777777 56999998776532 3679999998 789999999887
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=365.83 Aligned_cols=338 Identities=19% Similarity=0.252 Sum_probs=268.2
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
..++|+.|+|+++ ++.+.+++.+.... .......|++ .|.++||++||+|+.+.+| +++++++|++|
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~---------~~~~~~~Y~~-~g~~~lr~aia~~~~~~~~--~~~~~~~I~it 94 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAE---------AAAGLNRYPD-RDAVALRADLAAYLTAQTG--VGLTVENVWAA 94 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhh---------hhhhhccCCC-CchHHHHHHHHHHhhhhcc--CCCChhhEEEC
Confidence 4589999999986 45566666542110 0013467876 4889999999999988776 56789999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++++.+++.+++++||.|+++.|+|+.|...+... |.++++++.+ .+|.+|++.+++++.+ .++++|++
T Consensus 95 ~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~-----~~~~~i~l 166 (368)
T PRK03317 95 NGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGT-HTEWVEGPRA--ADFTLDVDAAVAAIAE-----HRPDVVFL 166 (368)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhc-CCeeEEcccC--CCCCCCHHHHHHHHhc-----cCCCEEEE
Confidence 99999999999999999999999999999999888875 9999988864 3678999999998864 26789999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++++|++.| +++||+||+|.++.+.+ . .+...+.. ..+++++++||||.||++|+
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~~-~--~~~~~~~~-----~~~~~i~~~SfSK~~g~~Gl 235 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRSG-T--PSALTLLP-----EYPRLVVSRTMSKAFAFAGG 235 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhcccC-C--cCHHHHHH-----hCCCEEEEEechhhhccchh
Confidence 99999999999999999998877 68999999999865543 2 23333333 24689999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||+++ ++.+.+.+......+.+++++|.++.+++.+.+. ..+.++.+.++++.+.+.|++.|+.+.++.++++
T Consensus 236 RiG~~~~-~~~~~~~l~~~~~~~~~s~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~ 310 (368)
T PRK03317 236 RLGYLAA-APAVVDALRLVRLPYHLSAVTQAAARAALRHADE----LLASVAALRAERDRVVAWLRELGLRVAPSDANFV 310 (368)
T ss_pred hhhhhhC-CHHHHHHHHhcCCCCCCCHHHHHHHHHHhhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEeCCCCCcEE
Confidence 9999999 5666666665554556899999999899876432 2344456788889999999989999888999988
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|.+++. ...+.+.++ ++||.|+++. .++++||+++ +.++++.++++|+++++..
T Consensus 311 ~~~~~~~---------~~~~~~~l~-~~Gv~v~~~~-----~~~~iRi~~~--~~~~~~~~~~~l~~~~~~~ 365 (368)
T PRK03317 311 LFGRFAD---------RHAVWQGLL-DRGVLIRDVG-----IPGWLRVTIG--TPEENDAFLAALAEVLATE 365 (368)
T ss_pred EEeccCC---------HHHHHHHHH-HCCEEEEeCC-----CCCeEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 8876642 235666666 5699998742 2579999997 7788999999999887654
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=365.92 Aligned_cols=333 Identities=20% Similarity=0.251 Sum_probs=264.4
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.+++|+.|+|+++ ++.+.+++.+.. .....|+++ +.++||++||++++ +++++|++|
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~-~~~~Lr~~ia~~~~--------~~~~~I~it 90 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAA-------------AEIWKYGDP-ENHDLRHALAAHHG--------VAPENIMVG 90 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCCC-ccHHHHHHHHHHhC--------CCHHHEEEc
Confidence 4579999999986 445555554311 123568876 47999999999985 688999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++++..++.++++|||.|+++.|+|+.+...+... |.+++.+|++.+ .+|++.+++.+.+ .++++|++
T Consensus 91 ~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~vp~~~~---~~~~~~l~~~~~~-----~~~~~i~l 161 (369)
T PRK08153 91 EGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGF-GGRLVTVPYRDD---REDLDALLDAARR-----ENAPLVYL 161 (369)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHc-CCeEEEeeCCCC---CCCHHHHHHHhcc-----cCCcEEEE
Confidence 99999999999999999999999999999999888875 999999998643 3788888776643 37889999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++.+|++.|+ ++++||+||+|.++.+.+ .+.+ +.. ..+++++++||||.||++|+
T Consensus 162 ~~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~--~~~~---~~~-----~~~~~i~~~SfSK~~g~~Gl 230 (369)
T PRK08153 162 ANPDNPMGSWHPAADIVAFIEALP-ETTLLVLDEAYCETAPAG--AAPP---IDT-----DDPNVIRMRTFSKAYGLAGA 230 (369)
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCcc--cchh---hhh-----cCCCEEEEecchHhccCcch
Confidence 999999999999999999999887 489999999999865543 2222 222 24689999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||+++ ++.+.+.+......+.+++++|.++..++.+..+ +++.++.++++++.+.+.|++.|+.+. |.+++|
T Consensus 231 RiG~~v~-~~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~~~~~L~~~g~~~~-p~~~~f 304 (369)
T PRK08153 231 RVGYAIG-APGTIKAFDKVRNHFGMNRIAQAAALAALKDQAY----LAEVVGKIAAARDRIAAIARANGLTPL-PSATNF 304 (369)
T ss_pred heeeeec-CHHHHHHHHHhhcCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCccC-CCcCcE
Confidence 9999999 4556666655555566899999999999986544 566778888999999999998888755 567789
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEee-CCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS-PGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~-pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+|++++... .....+.+.+++ +||.++ ||.. ..++++||+++ ++++++.++++|++++...+
T Consensus 305 ~~~~~~~~~-----~~a~~l~~~l~~-~Gi~v~~p~~~---~~~~~iRis~~--~~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 305 VAIDCGRDG-----AFARAVLDGLIA-RDIFVRMPGVA---PLDRCIRVSCG--PDEELDLFAEALPEALEAAR 367 (369)
T ss_pred EEEECCCCc-----ccHHHHHHHHHH-CCeEEeeCCCC---CCCCeEEEecC--CHHHHHHHHHHHHHHHHHhh
Confidence 999986310 112366777664 699995 6542 23569999998 78999999999999887554
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=364.39 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=245.9
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc-----EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHh
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-----IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLR 161 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~-----i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~ 161 (483)
..+|++..|.++||+++++|+..... ...++++ +++|+|+.+ +...+..++.|||+|++++|+|+.|...++
T Consensus 84 ~~~Y~~~~G~~~LR~aia~~~~~~~~--~~~~~~~i~~~~i~~g~Ga~~-l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~ 160 (423)
T PLN02397 84 NKEYLPIEGLAEFNKLSAKLAYGADS--PAIKENRVATVQCLSGTGSLR-LGAEFLARFYPGSTIYIPNPTWGNHHNIFR 160 (423)
T ss_pred CCCCCCcCCCHHHHHHHHHHHcCCCC--chhhcCeeEeeecccchHHHH-HHHHHHHHhCCCCEEEEeCCCchhHHHHHH
Confidence 45799999999999999999864432 1122333 334444443 344444555799999999999999999999
Q ss_pred hhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 162 WRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 162 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.. |++++++++.+.++|.+|++.+++.+.+. ..+++++++++||||||.+++.+++++|+++|++||++||+||+|
T Consensus 161 ~~-g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y 236 (423)
T PLN02397 161 DA-GVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAY 236 (423)
T ss_pred Hc-CCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccc
Confidence 86 99999999843345889999999887643 236788899999999999999999999999999999999999999
Q ss_pred ccCccCCC-CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEE--ecChHHHH----HHHHhhh--cCCCCh
Q 011570 242 AATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIY--SYNDQVVS----CARKMSS--FGLVSS 312 (483)
Q Consensus 242 ~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li--~~~~~l~~----~~~~~~~--~~~~s~ 312 (483)
.++.|++. ..+.++..+.. ..+++|+++||||+|+++|||+||++ +++..+.. .+..... ..+++.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~-----~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (423)
T PLN02397 237 QGFASGDLDADAQSVRMFVE-----DGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPI 311 (423)
T ss_pred CCccCCchhhhhHHHHHHHh-----cCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcH
Confidence 99877431 12334444432 23579999999999999999999995 44444332 2222222 234677
Q ss_pred HHHHHHHHhcCChhHHHHH---HHHHHHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHH
Q 011570 313 QTQHLIATMLSDDQFVEKF---IAESAKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
+.|.+++.+|.++++.+.+ +++.++.++++++.+.+.|+++| +.+..|+||||+|++++. ++
T Consensus 312 ~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~-----------~~ 380 (423)
T PLN02397 312 HGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHITKQIGMFSFTGLNK-----------EQ 380 (423)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccCCceEEEecCCCH-----------HH
Confidence 8999999999887544344 67788999999999999999987 788889999999998852 58
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+.+|++++||.|.+ .+ |++++..+.+.+++++++|+++++
T Consensus 381 ~~~Ll~~~~V~v~~--------~~--Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 381 VDRMTKEYHIYMTR--------DG--RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred HHHHHHhCCEEECC--------CC--eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 89999999999862 22 999976899999999999999985
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=362.25 Aligned_cols=328 Identities=18% Similarity=0.274 Sum_probs=261.6
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i 122 (483)
+.++++|+.|+|+++ ++.+.+.+.+.... .....|++ .|.++||+++|+|++ +++ ++|
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~~~~~lr~~ia~~~~--------~~~~~~I 84 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAE-----------VALNRYPD-PRAAALKAALRAAMG--------VPAGADV 84 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhc-----------cccccCCC-CCHHHHHHHHHHHhC--------cCCCCcE
Confidence 457899999999986 55566665542110 12467887 578999999999986 233 589
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||+|++++|+|..|...++.. |++++++++++ +|.+|++.+++++.+ .++++
T Consensus 85 ~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~i~~~~--~~~~d~~~l~~~~~~-----~~~~~ 156 (356)
T PRK04870 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLA-GLEFVGVPLTA--DFTLDLPAMLAAIAE-----HRPAL 156 (356)
T ss_pred EEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhhc-----CCCCE
Confidence 99999999999999999999999999999999998888876 99999999874 578999999998864 27899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.+++.+++++|+++| +.++|+||+|.++. . ..+.+ .+ . ..+++++++|||| +|+
T Consensus 157 v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~--~-~~~~~--~~-~-----~~~~vi~~~S~SK-~~~ 221 (356)
T PRK04870 157 VFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFA--G-DSWLP--RL-A-----RFPNLLVMRTVSK-LGL 221 (356)
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhc--C-cchHH--HH-h-----hCCCEEEEecchh-hhh
Confidence 99999999999999999999999988 67899999998743 2 22111 12 2 3468999999999 899
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+|+||++++ +.+.+.+......+.++.++|.++..++.+.++ +++.++.++++++.+.+.|+++ |+.+.+ .
T Consensus 222 ~GlRiG~~i~~-~~~i~~~~~~~~~~~~~~~~q~~a~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~ 295 (356)
T PRK04870 222 AGLRLGYLAGH-PAWIAELDKVRPPYNVNVLTQATALFALEHVDV----LDAQAAQLRAERTRLAAALAALPGVTVFP-S 295 (356)
T ss_pred HHHhhhhhhCC-HHHHHHHHHccCCCcCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHhCCCcEECC-C
Confidence 99999999994 556565655555566888999998888876443 5666777889999999999887 887654 5
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|+|++++. ..++...+ +++||.|++|..|+...++++||+++ +.++++.++++|+++
T Consensus 296 ~~~~~~~~~~~---------~~~~~~~l-~~~gI~v~~~~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~ 355 (356)
T PRK04870 296 AANFILVRVPD---------AAAVFDGL-KTRGVLVKNLSGMHPLLANCLRVTVG--TPEENAQFLAALKAA 355 (356)
T ss_pred CCeEEEEECCC---------HHHHHHHH-HHCCEEEEECCCCCCCCCCeEEEeCC--CHHHHHHHHHHHHHh
Confidence 56799999872 12455554 57799999999986555789999998 788899999999765
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=358.82 Aligned_cols=324 Identities=21% Similarity=0.273 Sum_probs=255.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.+++||+.|+|+++ ++.+.+++.+.. .....|+++.|.++||+++|++++ +++++|++
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~Y~~~~g~~~lr~aia~~~~--------~~~~~I~i 80 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARL-------------GDLAAYPSTEDERRARAAVAARHG--------RTPDEVLL 80 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHh-------------hHhhcCCCccchHHHHHHHHHHhC--------cChhhEEE
Confidence 57899999999875 555666665421 234579988899999999999985 57999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++.+++. +.+| .++++.|+|..+...++.. |++++.++++++ |.+|++.++ .++++++
T Consensus 81 t~Ga~~al~~~~~--l~~~-~viv~~P~y~~~~~~~~~~-G~~i~~v~~~~~--~~~d~~~l~----------~~~~~i~ 144 (349)
T PRK07908 81 LAGAAEGFALLAR--LRPR-RAAVVHPSFTEPEAALRAA-GIPVHRVVLDPP--FRLDPAAVP----------DDADLVV 144 (349)
T ss_pred CCCHHHHHHHHHh--cCCC-eEEEeCCCChHHHHHHHHc-CCEEEeeccCcc--cCcChhHhc----------cCCCEEE
Confidence 9999999999988 4665 5677899999998888875 999999998753 778887542 2678999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.++|.+++.++ |+ ++.++|+||+|.++.. + . ..++.+. ..+++++++||||.||++|
T Consensus 145 l~np~NPTG~~~~~~~l~~l---~~-~~~~iIvDe~y~~~~~-~-~-~~~l~~~-------~~~~~i~i~S~SK~~~l~G 210 (349)
T PRK07908 145 IGNPTNPTSVLHPAEQLLAL---RR-PGRILVVDEAFADAVP-G-E-PESLAGD-------DLPGVLVLRSLTKTWSLAG 210 (349)
T ss_pred EcCCCCCCCCCcCHHHHHHH---Hh-cCCEEEEECcchhhcc-C-C-ccccccc-------cCCCEEEEeecccccCCcc
Confidence 99999999999997766555 44 4778999999988633 2 2 2444332 3468999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceE
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~ 364 (483)
+|+||+++ ++.+.+.+......+.++++.+.++..++.+.. .+++++.++.++++++++.+.|.++|+++.+|.+|+
T Consensus 211 lRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~~g~ 287 (349)
T PRK07908 211 LRVGYALG-APDVLARLTRGRAHWPVGTLQLEAIAACCAPRA--VAEAAADAARLAADRAEMVAGLRAVGARVVDPAAAP 287 (349)
T ss_pred ceeeeeec-CHHHHHHHHhcCCCCCccHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHHHHHHhCCcEeccCCCce
Confidence 99999998 455666665555556678888888888877432 345777888999999999999998899888888899
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|+|++++. ...+.. +++++||.|+||..|+..++++|||+++ +++++++++++|++++.
T Consensus 288 ~~~~~~~~---------~~~~~~-~l~~~gI~v~~g~~f~~~~~~~vRis~~--~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 288 FVLVRVPD---------AELLRK-RLRERGIAVRRGDTFPGLDPDYLRLAVR--PRAEVPVLVQALAEILK 346 (349)
T ss_pred EEEEECCc---------HHHHHH-HHHhCCEEEEECCCCCCCCCCeEEEEeC--CCccHHHHHHHHHHHHh
Confidence 99999974 113344 4567799999999986545789999997 77889999999987654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=360.21 Aligned_cols=325 Identities=18% Similarity=0.253 Sum_probs=259.7
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.|+|+++ ++.+.+++.+.. .....|++.. .++||++|+++++ +++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~Y~~~~-~~~Lr~aia~~~~--------v~~e~I~i 100 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSA-------------ALSGRYDLEL-EDDLRTLFAAQEG--------LPADHVMA 100 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHH-------------HHhcCCCCch-HHHHHHHHHHHhC--------cChhhEEE
Confidence 57799999999886 555555554310 1224687654 8999999999875 68999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.+++++ +|.+|++.+++.. .++++|+
T Consensus 101 t~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~-------~~~~~v~ 170 (370)
T PRK09105 101 YAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQ-GAPVAKVPLRA--DGAHDVKAMLAAD-------PNAGLIY 170 (370)
T ss_pred cCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHhcC-------CCCCEEE
Confidence 999999999999999999999999999999999988876 99999999864 5788999987652 2678999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+||||||||.+++.++++++++.++ ++++||+||+|.++ .. . .+..++.. ..+++++++||||.||++|
T Consensus 171 l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f--~~-~--~s~~~~~~-----~~~~vi~~~SfSK~~g~~G 239 (370)
T PRK09105 171 ICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHF--SD-A--PSVVDLVA-----QRKDLIVLRTFSKLYGMAG 239 (370)
T ss_pred EeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHh--cc-C--cchHHHHh-----hCCCEEEEecccHhhcCCc
Confidence 9999999999999999999998764 58999999999763 33 2 24444433 3578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceE
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~ 364 (483)
+|+||+++ ++.+.+.+... ..+.++.++|.++..++.+.+ ++++.++.++++++++.+.|++.|+++.++++++
T Consensus 240 lRiG~~v~-~~~~i~~l~~~-~~~~~~~~~~~aa~~~L~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~f 313 (370)
T PRK09105 240 MRLGLAAA-RPDLLAKLARF-GHNPLPVPAAAAGLASLRDPK----LVPQRRAENAAVREDTIAWLKKKGYKCTPSQANC 313 (370)
T ss_pred cceeeeec-CHHHHHHHHhc-CCCCcCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCcE
Confidence 99999999 45566666555 344578888888888887644 4677778889999999999999999888888876
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
| |++++. + ..++++.|+++ ||.| |..|. ..++|+||+++ ++++++.++++|++++
T Consensus 314 ~-~~~~~~--~------~~~l~~~L~~~-gI~v--~~~~~-~~~~~~Ris~~--~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 314 F-MVDVKR--P------AKAVADAMAKQ-GVFI--GRSWP-IWPNWVRVTVG--SEEEMAAFRSAFAKVM 368 (370)
T ss_pred E-EEeCCC--C------HHHHHHHHHHC-CcEE--ecCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHHh
Confidence 5 577752 1 23778888855 9998 34453 34689999998 6788999999888765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=358.37 Aligned_cols=325 Identities=17% Similarity=0.286 Sum_probs=256.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++|+++ ++.+.+++.+... .....|++. |.++||++||++++ +++++|++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~------------~~~~~y~~~-~~~~lr~aia~~~~--------~~~~~I~i 82 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALG------------DDLRLYPDP-NADALRQAIAAYYG--------LDPEQVFV 82 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhh------------hhhhcCCCC-cHHHHHHHHHHHhC--------CCHHHEEE
Confidence 56799999999986 5566666654211 124578766 56999999999986 68999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++++++++||.|++++|+|+.|...++.. |++++.+++++ +|.+|++.+++ ++++|+
T Consensus 83 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~----------~~~~v~ 149 (353)
T PRK05387 83 GNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLY-GIPYEEIPLDD--DFSIDVEDYLR----------PNGGII 149 (353)
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHc-CCEEEEeecCC--CCCCCHHHHHh----------cCCEEE
Confidence 999999999999999999999999999999888877775 99999999864 57899998863 347899
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.+++.+|++.++ +++||+||+|.+ |.+ ....+ +.. ..+++++++||||.||++|
T Consensus 150 ~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~--~~~-~~~~~---~~~-----~~~~~i~~~S~SK~~~~~G 216 (353)
T PRK05387 150 FPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVD--FGG-ESAIP---LID-----RYPNLLVVQTFSKSRSLAG 216 (353)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccc--cCC-cchHH---HHh-----hCCCEEEEEehhHhhcchh
Confidence 9999999999999999999998654 899999999976 444 22222 222 2467999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh---cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS---FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
+|+||+++ ++.+.+.+..... .+.++.++|.++..++.+.++ .++.++++.++++.+.+.|.+.|+++.+ .
T Consensus 217 lR~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~ 290 (353)
T PRK05387 217 LRVGFAIG-HPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAY----FEETRAKVIATRERLVEELEALGFEVLP-S 290 (353)
T ss_pred hhceeeec-CHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHCCCeECC-C
Confidence 99999998 5666666655442 245788999999899876554 4566777888999999999998987654 5
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+++|+|++++.. +..++++.|. ++||.|++.... ..++++||+++ +++++++++++|+++++
T Consensus 291 ~~~~~~~~~~~~-------~~~~~~~~l~-~~gi~v~~~~~~--~~~~~iRis~~--~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 291 KANFVFARHPSH-------DAAELAAKLR-ERGIIVRHFNKP--RIDQFLRITIG--TDEEMEALVDALKEILA 352 (353)
T ss_pred cCcEEEEECCCC-------CHHHHHHHHH-HCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHHhh
Confidence 667999998731 1236777775 569999853221 23579999998 67999999999998765
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=357.01 Aligned_cols=347 Identities=20% Similarity=0.288 Sum_probs=270.1
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.++|+++ ++.+.+++.+.... .....|+++.|.++||+++|++++ +++++|+
T Consensus 27 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~l~--------~~~~~v~ 87 (380)
T PRK06225 27 DKEMIWMGQNTNHLGPHEEVREAMIRCIEE-----------GEYCKYPPPEGFPELRELILKDLG--------LDDDEAL 87 (380)
T ss_pred cCCeEEccCCCCCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCcchHHHHHHHHHhcC--------CCCCcEE
Confidence 457899999999886 45555555442110 123568888899999999999976 5788999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.+++.+||+|++++|+|..+...+... |.++++++++ ++++|.+|++.+++.+.+ ++++
T Consensus 88 ~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~ 160 (380)
T PRK06225 88 ITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRF-GAEVIEVPIYSEECNYKLTPELVKENMDE------NTRL 160 (380)
T ss_pred EeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHh-CceEEeeccccccCCccCCHHHHHhhcCC------CceE
Confidence 9999999999999999999999999999999888877775 9999999974 344688999999998753 6889
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+++|||||||.+++.+++++|+++|+++|+++|+||+|.++... . .+...+ ..++++++.||||.+|+
T Consensus 161 v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~--~~~~~~-------~~~~~i~~~s~SK~~g~ 229 (380)
T PRK06225 161 IYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE--H--TLAAEY-------APEHTVTSYSFSKIFGM 229 (380)
T ss_pred EEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc--C--Cchhhc-------CCCCEEEEeechhhcCC
Confidence 999999999999999999999999999999999999999875322 1 222222 24788999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhh-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccee-ec
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGC-LK 359 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~-~~ 359 (483)
+|+|+||++++ +.+.+.+.... ...+++.++|.++..++... .++.++.++.++++++.+.+.|+++ |+.+ ..
T Consensus 230 ~G~RiG~i~~~-~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 305 (380)
T PRK06225 230 AGLRIGAVVAT-PDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK---DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVY 305 (380)
T ss_pred ccceeEEEecC-HHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccC
Confidence 99999999995 55665554433 23457888998887777642 2345556666777788888888875 5432 23
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+.+|+|+|++++... .+..++...|. ++||.++||..|+.. +++++|++++ .+++++++++++|++++++.+
T Consensus 306 ~~~g~~~~~~~~~~~-----~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~~iR~s~~-~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 306 PSHGNMMVIDISEAG-----IDPEDLVEYLL-ERKIFVRQGTYTSKRFGDRYIRVSFS-IPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred CCCCeEEEEEccccc-----CCHHHHHHHHH-HCCEEEcCCcccCcCCCCceEEEEeC-CCHHHHHHHHHHHHHHHHHhh
Confidence 456678999986421 11336777777 569999999876532 4579999998 488999999999999998765
Q ss_pred h
Q 011570 439 E 439 (483)
Q Consensus 439 ~ 439 (483)
+
T Consensus 379 ~ 379 (380)
T PRK06225 379 T 379 (380)
T ss_pred c
Confidence 3
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=357.80 Aligned_cols=334 Identities=22% Similarity=0.323 Sum_probs=267.8
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++++|+.++|+++ ++.+.+.+.+.. .....|++.. ..+||+++|++++ +++++|+
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~-~~~lr~~ia~~~~--------~~~~~i~ 88 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAA-------------DELHRYPDGS-GFELKAALAEKFG--------VDPERII 88 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHH-------------HhhcCCCCCc-HHHHHHHHHHHhC--------cCHHHEE
Confidence 456899999998876 344555554321 1245788765 4799999999985 5789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|..+...+... |.+++.++++ ++.+|++.+++++.+ ++++|
T Consensus 89 ~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~---~~~~~~~~l~~~~~~------~~~~v 158 (367)
T PRK02731 89 LGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAV-GAKPVEVPAK---DYGHDLDAMLAAVTP------RTRLV 158 (367)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHc-CCeEEEeccc---CCCCCHHHHHHHhCC------CCcEE
Confidence 9999999999999999999999999999999888777765 9999999874 467999999998853 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++.++++.++ +|++||+||+|.++.+.+ ....++ .... ..+++++++||||.||++
T Consensus 159 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~-~~~~~~-~~~~-----~~~~~i~~~S~SK~~g~~ 230 (367)
T PRK02731 159 FIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRK-DYEDGL-ELVA-----KFPNVVVTRTFSKAYGLA 230 (367)
T ss_pred EEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECcHHHhccCc-CcccHH-HHHh-----hcCCEEEEeeehHhhcCc
Confidence 99999999999999999999999875 699999999998876654 322333 2222 347899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g 363 (483)
|+|+||+++ ++.+.+.+......+.+++++|.++..++.+..+ .++.++.++++++.+.+.|++.|+.+.+ .+|
T Consensus 231 G~RiG~l~~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~g 304 (367)
T PRK02731 231 GLRVGYGIA-PPEIIDALNRVRQPFNVNSLALAAAVAALDDDAF----VEKSRALNAEGMAWLTEFLAELGLEYIP-SVG 304 (367)
T ss_pred ccceeeeeC-CHHHHHHHHHccCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCCCccCC-CCc
Confidence 999999999 4566666666555556789999999999987544 5667778888899999999988988775 456
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+|+|++++...+ ..++++.|. ++||.|+++..|+ .++++||+++ +.++++.++++|+++++
T Consensus 305 ~~~~i~~~~~~~------~~~~~~~L~-~~gI~v~~~~~~~--~~~~iRis~~--~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 305 NFILVDFDDGKD------AAEAYQALL-KRGVIVRPVAGYG--LPNALRITIG--TEEENRRFLAALKEFLA 365 (367)
T ss_pred eEEEEECCCCCC------HHHHHHHHH-HCCEEEEeCCCCC--CCCeEEEecC--CHHHHHHHHHHHHHHHh
Confidence 899999964322 336777776 5699999998875 3579999997 77899999999998764
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=353.85 Aligned_cols=314 Identities=17% Similarity=0.233 Sum_probs=246.1
Q ss_pred CCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 45 PNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
+.++++|+.|+|+++++.... . ...+..||+.. .+||+++|++++ + .++++|++
T Consensus 23 ~~~~i~ls~Nenp~~~~~~~~--~---------------~~~~~~Yp~~~--~~L~~~ia~~~~------~-~~~~~I~i 76 (339)
T PRK06959 23 YDAWLDLSTGINPHGYPVPPV--P---------------ADAWRRLPEDD--DGLAACAARYYG------A-PDAAHVLP 76 (339)
T ss_pred hhhhceeccCCCCCCCCCCCC--C---------------HHHHHhCCCch--HHHHHHHHHHhC------C-CCcccEEE
Confidence 456799999999987541000 0 01245698753 899999999987 2 14689999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..+.. ++++|| |+++.|+|+.|...++.. |++++++++++ +.+.+ .+++++
T Consensus 77 ~~Gs~e~i~~l~~-~~~~g~-v~v~~P~y~~y~~~~~~~-g~~~~~v~~~~--------~~~~~----------~~~~v~ 135 (339)
T PRK06959 77 VAGSQAAIRALPA-LLPRGR-VGIAPLAYSEYAPAFARH-GHRVVPLDEAA--------DTLPA----------ALTHLI 135 (339)
T ss_pred CcCHHHHHHHHHH-hcCCCe-EEEcCCCcHHHHHHHHHC-CCEEEeecccc--------hhccc----------cCCEEE
Confidence 9999999997765 568887 889999999999999886 99999988642 11211 457899
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+||||||||.+++.+++++|++.|.+++.+||+||+|.++.+. .++..+. ..+++|+++||||.||+||
T Consensus 136 l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-----~s~~~~~------~~~~vi~l~SfSK~~gl~G 204 (339)
T PRK06959 136 VVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-----ASLAAHT------DRPGLVVLRSVGKFFGLAG 204 (339)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-----ccchhcc------CCCCEEEEecChhhcCCcc
Confidence 9999999999999999999999998889999999999985321 2333332 2367999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceE
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~ 364 (483)
+|+||+++ ++.+.+.+.+....+.++.++|.++.++|.+.++ .++.++.++++++++.+.|+++|+++. .+++
T Consensus 205 lRiGy~v~-~~~li~~l~~~~~~~~vs~~~q~a~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~ 277 (339)
T PRK06959 205 VRAGFVLA-APALLAALRDALGAWTVSGPARHAVRAAFADAAW----QAAMRERLAADGARLAALLRAHGFAVH--ATPL 277 (339)
T ss_pred hheEEEec-CHHHHHHHHHhcCCCCCcHHHHHHHHHHhCcHHH----HHHHHHHHHHHHHHHHHHHHHCCCCcc--Ccce
Confidence 99999999 5667777777666677899999999999987655 456778899999999999999988765 3568
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
|+|++++. ..++...|. ++||.|++ |+ ..+++||+++ .++++++.++++|+++++....
T Consensus 278 f~~~~~~~---------~~~l~~~l~-~~GI~vr~---~~--~~~~lRisi~-~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 278 FSWTDDPR---------AAALHAALA-RRGIWTRY---FA--PPPSVRFGLP-ADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred EEEEeCCC---------HHHHHHHHH-hCCeEEEE---CC--CCCeEEEECC-CCHHHHHHHHHHHHHHHHHHhh
Confidence 99998762 125667666 45999985 32 3469999994 2778999999999988776543
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=355.18 Aligned_cols=320 Identities=19% Similarity=0.301 Sum_probs=253.4
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.+.++|+.|+|+++++.. +. ......|++. +.++||+++|++++ +++++|++|
T Consensus 31 ~~~~~l~~ne~~~~~~~~---~~---------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------~~~~~I~it 83 (354)
T PRK04635 31 RGDIWINANESPFNNEYK---LD---------------LARLNRYPEC-QPPELINAYSAYAG--------VAPEQILTS 83 (354)
T ss_pred CCcEEeeCCCCCCCCChh---hh---------------hHHhccCCCC-CHHHHHHHHHHHhC--------cCHHHEEEe
Confidence 356899999999875421 10 1234679876 47999999999875 689999999
Q ss_pred CChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 126 GGATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
+|++++|.+++.+++++| |.|+++.|+|+.|...++.. |++++.+|+++ +|.+|++.++. + .++++|+
T Consensus 84 ~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~-g~~v~~v~~~~--~~~~~~~~l~~-~-------~~~~li~ 152 (354)
T PRK04635 84 RGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETF-NVGVKALPLTA--DYQLPLDYIEQ-L-------DGAKLVF 152 (354)
T ss_pred CCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHc-CCEEEEEecCC--CCCCCHHHHHh-c-------cCCCEEE
Confidence 999999999999999999 99999999999998888775 99999999864 47789888862 2 2789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+||||||||.+++.+++++|++.|+ +++||+||+|.++. . . .+..++.. ..+++++++||||.||++|
T Consensus 153 i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~--~-~--~s~~~~~~-----~~~~~iv~~S~SK~~~l~G 220 (354)
T PRK04635 153 ICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFC--P-E--YSVADLLA-----SYPNLVVLRTLSKAFALAG 220 (354)
T ss_pred EeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhc--c-C--cchHHHHh-----hCCCEEEEechHHHhhhhH
Confidence 9999999999999999999999876 48999999998753 2 1 23333333 3578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g 363 (483)
+|+||+++ ++.+.+.+......+.++.+.|.++..++.+... +++++.++.++++++.+.+.|++++ +++.+++|
T Consensus 221 lRlG~~i~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g- 296 (354)
T PRK04635 221 ARCGFTLA-NEELIEILMRVIAPYPVPLPVSEIATQALSEAGL--ARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNG- 296 (354)
T ss_pred HHHhhhhC-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCC-
Confidence 99999999 5556666655555566788888888888876432 3356667788999999999999885 78777765
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|++++. ..++.+. ++++||.|+++..+ ..++++|||++ ++++++.++++|++.
T Consensus 297 ~f~~~~~~~---------~~~~~~~-l~~~gv~v~~~~~~--~~~~~lRis~~--~~e~~~~l~~al~~~ 352 (354)
T PRK04635 297 NYVLAKFDD---------VDAVFKA-LWDAGIVARAYKDP--RLANCIRFSFS--NRAETDKLIGLIRNQ 352 (354)
T ss_pred cEEEEECCC---------HHHHHHH-HHHCCEEEEECCCC--CCCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 699998863 1245554 45779999876533 23579999998 789999999998753
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=344.73 Aligned_cols=325 Identities=20% Similarity=0.327 Sum_probs=251.9
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
.++|+.|+|+++ ++.+.+++.+.... .....|++. +..+||+++|++++ +++++|++|+
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~ia~~~~--------~~~~~i~it~ 83 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKS-----------SQVNIYPDP-TAEKLREELARYCS--------VVPTNIFVGN 83 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhc-----------CcccCCCCc-cHHHHHHHHHHHhC--------CCcccEEEec
Confidence 479999999875 45555555431110 124568765 46999999999975 6789999999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~ 206 (483)
|+++++..++.+++++||+|++++|+|+.+...++.. |.+++.+++++ +|.+|++.+++++.+ .++|+|+++
T Consensus 84 G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~~~-----~~~k~v~l~ 155 (351)
T PRK14807 84 GSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIA-GAVEIPVKLKE--DYTYDVGSFIKVIEK-----YQPKLVFLC 155 (351)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCCCHHHHHHHhhc-----cCCCEEEEe
Confidence 9999999999999999999999999999988877775 99999999864 478999999998864 278999999
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCce
Q 011570 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR 286 (483)
Q Consensus 207 ~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR 286 (483)
|||||||.+++.+++.++++ +++.++|+||+|.++ + + ....+. .. ..+++|+++||||.||+||+|
T Consensus 156 ~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~-~-~-~~~~~~---~~-----~~~~vi~~~S~SK~~~~~GlR 221 (351)
T PRK14807 156 NPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEF-Y-G-NTIVDV---IN-----EFENLIVLRTLSKAFGLAGLR 221 (351)
T ss_pred CCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhh-c-c-cchHHH---hh-----hCCCEEEEecchHhcccchhc
Confidence 99999999999888777765 456789999999875 3 3 222222 22 347899999999999999999
Q ss_pred EEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEE
Q 011570 287 VGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLF 365 (483)
Q Consensus 287 iG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f 365 (483)
+||+++ ++.+.+.+......+.+++++|.++..++.+. + +++..+.+.++++.+.+.|.+. |+.+.++ +|+|
T Consensus 222 iG~~v~-~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~-~----~~~~~~~~~~~r~~l~~~l~~~~g~~~~~~-~~~~ 294 (351)
T PRK14807 222 VGYAVA-NENILKYLNLVKSPYNINSLSQVIALKVLRTG-V----LKERVNYILNERERLIKELSKIPGIKVYPS-KTNF 294 (351)
T ss_pred eeeeec-CHHHHHHHHHccCCCCcCHHHHHHHHHHHhHH-H----HHHHHHHHHHHHHHHHHHHHhCCCcEECcC-CccE
Confidence 999999 56676766666555668899999999999753 3 3444556778888899999876 8877655 4679
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+|++++. ...+++.++ ++||.|+++..+. ..++++||+++ +.++.+.+++.|++++
T Consensus 295 ~~i~~~~---------~~~~~~~l~-~~gV~v~~~~~~~-~~~~~iRis~~--~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 295 ILVKFKD---------ADYVYQGLL-ERGILVRDFSKVE-GLEGALRITVS--SCEANDYLINGLKELL 350 (351)
T ss_pred EEEEcCC---------HHHHHHHHH-HCCEEEEECCCCC-CCCCeEEEEcC--CHHHHHHHHHHHHHhh
Confidence 9999873 225566666 5699999865322 24679999998 6777888888887653
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=343.40 Aligned_cols=317 Identities=17% Similarity=0.254 Sum_probs=244.0
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.+.++|+|+.|+|+++ ++.+.+.+.+.... .....|+++ |.++||+++|+|+++. + +++++|
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~~Y~~~-~~~~Lr~aia~~~~~~-~----~~~~~i 79 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNS-----------DTLRIYYDS-PDEELIEKILSYLDTD-F----LSKNNV 79 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-ChHHHHHHHHHHhCCC-C----CCcceE
Confidence 3467899999999997 44455554431110 123457765 7999999999999853 1 589999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.++ |.|++++|+|+.|...++.. |++++.+|++++ |.++... + .++++
T Consensus 80 ~it~Ga~~~i~~~~~~~----d~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~~~--~~~~~~~----~-------~~~~~ 141 (335)
T PRK14808 80 SVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTKD--LRIPEVN----V-------GEGDV 141 (335)
T ss_pred EEcCCHHHHHHHHHHHh----CcEEECCCCHHHHHHHHHHc-CCeEEEecCCCc--CCCChhH----c-------cCCCE
Confidence 99999999999999888 67999999999999999986 999999998753 4444321 1 14689
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
++++|||||||.+++.+++++|+ +++++||+||+|.++ .+ ..+.+ +.. ..+++++++||||+||+
T Consensus 142 i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f--~~-~~~~~---~~~-----~~~~vi~~~S~SK~~~l 206 (335)
T PRK14808 142 VFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEF--HG-ESYVD---LLK-----KYENLAVIRTFSKAFSL 206 (335)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhh--cC-CchHH---HHH-----hCCCEEEEEechhhccC
Confidence 99999999999999999988886 479999999999984 33 22222 222 34789999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+|+||++++ +.+.+.+......+.++.++|.++..++.+.++ ..+..+.+.++++.+.+.|++.|+++.+++|
T Consensus 207 ~GlRvG~~v~~-~~~~~~l~~~~~~~~~~~~~q~a~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~g 281 (335)
T PRK14808 207 AAQRIGYVVSS-EKFIDAYNRVRLPFNVSYVSQMFAKVALDHREI----FEERTKFIVEERERMKSALREMGYRITDSRG 281 (335)
T ss_pred cccceEEEEeC-HHHHHHHHHhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHHHHCCCEECCCCC
Confidence 99999999994 566666666655566889999998888875433 4555667777789999999999998888866
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
.|+|++++.. ...++.+.+. ++||.|+. | .+++||+++ +.++++.+++.|+.+
T Consensus 282 -~f~~~~l~~~-------~~~~~~~~l~-~~Gi~V~~---~----~~~~Risi~--~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 282 -NFVFIFMEKE-------EKERLLEHLR-AKNIAVRS---F----REGVRITIG--KREENDMILKELEVF 334 (335)
T ss_pred -eEEEEeCCCc-------cHHHHHHHHH-HCCeEEEE---C----CCCeEEecC--CHHHHHHHHHHHHhh
Confidence 5889999731 1235666655 56999994 3 257999998 788999999988753
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=337.86 Aligned_cols=308 Identities=21% Similarity=0.309 Sum_probs=235.2
Q ss_pred CCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 40 HPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 40 ~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
+-+.++.++|+|+.|+|+++++.+.+++.+. ......|+. ...||+++|++++
T Consensus 2 ~~~~~~~~~i~l~~~~np~~p~~~~~a~~~~-------------~~~~~~yp~---~~~l~~~ia~~~~----------- 54 (311)
T PRK08354 2 HGGIREEGLIDFSASVNPYPPEWLDEMFERA-------------KEISGRYTY---YEWLEEEFSKLFG----------- 54 (311)
T ss_pred CCCCCccceeEecCCCCCCCCHHHHHHHHHH-------------HHHhhcCCC---hHHHHHHHHHHHC-----------
Confidence 4455677899999999999877666666541 112346764 4779999998875
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|+++++.+++..+ .+||.|++++|+|+.|...++.. |++++.++ +|++.+++.+. +
T Consensus 55 ~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~--------~d~~~l~~~~~-------~ 117 (311)
T PRK08354 55 EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFF-AARIIKGP--------NDPEKLEELVE-------R 117 (311)
T ss_pred CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHc-CCEEeecC--------CCHHHHHHhhc-------C
Confidence 47999999999999888554 48999999999999999999886 99997754 57888877764 4
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.++. .. . .++++++++||||+
T Consensus 118 ~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~------~-------~~~~vi~~~S~SK~ 183 (311)
T PRK08354 118 NSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP-ES------P-------EGENIIKLRTFTKS 183 (311)
T ss_pred CCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc-cc------c-------CCCcEEEEeccHhh
Confidence 5789999999999999999999999999999999999999999876653 21 1 23789999999999
Q ss_pred cCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec
Q 011570 280 MGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK 359 (483)
Q Consensus 280 ~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~ 359 (483)
||+||+|+||+++ +.+.++.....+.++.+.+.++..++.+ .+ +++.+.++.+.++++.+.+.+ ..+
T Consensus 184 ~~l~GlRiG~~v~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~l------~~~ 250 (311)
T PRK08354 184 YGLPGIRVGYVKG----FEEAFRSVRMPWSIGSTGYAFLEFLIED-DF--EHLRKTMPLIWREKERFEKAL------YVK 250 (311)
T ss_pred cCCccceeeeeee----hHHHHHHcCCCccCCHHHHHHHHHHHHh-HH--HHHHHHHHHHHHHHHHHHHhc------CCC
Confidence 9999999999998 3445555556666788888888777764 22 234455555666666655544 235
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+++++| |++++. ..++++.+. ++||.|+||+.|+ .++|+||+++ .+++.+.++++|+++
T Consensus 251 ~~~~~~-~~~~~~---------~~~~~~~l~-~~gv~v~~g~~f~--~~~~iRi~~~--~~~~~~~l~~al~~~ 309 (311)
T PRK08354 251 SDANFF-IKDVGD---------AEKFVEFLK-RNGILVRDCTSFG--LPGYIRFSVR--DREENEKLIRALREW 309 (311)
T ss_pred CCCcEE-EEECCC---------HHHHHHHHH-HCCeEEEecccCC--CCCeEEEEeC--CHHHHHHHHHHHHHh
Confidence 666644 466642 236777665 5699999999996 3589999998 566677777777653
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=347.18 Aligned_cols=335 Identities=20% Similarity=0.311 Sum_probs=261.3
Q ss_pred CCCCCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCc
Q 011570 39 YHPTKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITF 117 (483)
Q Consensus 39 ~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~ 117 (483)
|.+..++.++|+|+.++++++ ++.+.+++.+.. .....|++ .|..++|+++|++++ +
T Consensus 15 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~-~g~~~lr~~ia~~~~--------~ 72 (352)
T PRK03321 15 YVPGKTVPGAIKLSSNETPFGPLPSVRAAIARAA-------------AGVNRYPD-MGAVELRAALAEHLG--------V 72 (352)
T ss_pred CCCCCCcccceeccCCCCCCCCCHHHHHHHHHHH-------------HhcCcCCC-CcHHHHHHHHHHHhC--------c
Confidence 555555567899999999884 556666655411 12356864 689999999999986 5
Q ss_pred CCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcC
Q 011570 118 DPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 197 (483)
++++|++|+|+++++..++.++++|||.|+++.|+|..|...++.. |.+++.++++++ +.+|++.+++++.+
T Consensus 73 ~~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~-g~~~~~v~~~~~--~~~~~~~l~~~~~~----- 144 (352)
T PRK03321 73 PPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVA-GATPVQVPLTPD--HTHDLDAMAAAITD----- 144 (352)
T ss_pred CHHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHc-CCEEEEccCCCC--CCCCHHHHHHhhcc-----
Confidence 7899999999999999999999999999999999999887777775 999999998743 57899999988853
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
++++|+++|||||||.+++.+++.++++.+ +++++||+||+|.++.+.+ ....++..+ . ..+++++++|||
T Consensus 145 -~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~-~~~~~~~~~-~-----~~~~vi~~~S~S 215 (352)
T PRK03321 145 -RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRDD-DVPDGLELV-R-----DHPNVVVLRTFS 215 (352)
T ss_pred -CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccCc-CCCcHHHHH-h-----hCCCEEEEecch
Confidence 789999999999999999999999888876 4799999999999887654 322333322 2 347899999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
|.||++|+|+||+++ ++.+.+.+.+....+.+++++|.++.+++...+. +.+ ..+.+.++++.+.+.|.+.|+.+
T Consensus 216 K~~g~~GlRiG~~v~-~~~~~~~~~~~~~~~~~s~~~q~~a~~~l~~~~~---~~~-~~~~~~~~r~~~~~~L~~~~~~~ 290 (352)
T PRK03321 216 KAYGLAGLRVGYAVG-HPEVIAALRKVAVPFSVNSLAQAAAIASLAAEDE---LLE-RVDAVVAERDRVRAALRAAGWTV 290 (352)
T ss_pred HHhhhHHHhhhhhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH---HHH-HHHHHHHHHHHHHHHHHHCCCcc
Confidence 999999999999999 4666666666555566899999988888865433 223 33344455678889998888876
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.++ +|+|+|++++.. ..++.+.|. ++||.|++ |+ +.++||+++ +.+++++++++|++++.
T Consensus 291 ~~~-~g~~i~i~l~~~--------~~~~~~~l~-~~gI~v~~---~~---~~~iRi~~~--~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 291 PPS-QANFVWLPLGER--------TADFAAAAA-EAGVVVRP---FA---GEGVRVTIG--APEENDAFLRAARAWRA 350 (352)
T ss_pred CCC-CCCEEEEeCCCC--------HHHHHHHHH-HCCEEEEc---cC---CCcEEEeeC--CHHHHHHHHHHHHHHhc
Confidence 554 568999998531 236777764 67999987 43 346999997 88999999999988653
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=340.65 Aligned_cols=309 Identities=17% Similarity=0.241 Sum_probs=237.8
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.++|+|+.|+|+++++.. . +.. .....||+. ..+||++||++++ +++|++|
T Consensus 20 ~~~i~l~~ne~p~~~~~~-~-~~~---------------~~~~~yp~~--~~~Lr~~ia~~~~----------~~~I~it 70 (330)
T PRK05664 20 ADWLDLSTGIAPWPWPVP-A-IPA---------------DAWARLPET--DDGLEAAARAYYG----------APQLLPV 70 (330)
T ss_pred HHheeecCCcCCCCCCCc-c-cCH---------------HHHHhCCCC--hHHHHHHHHHHhC----------CCCEEEC
Confidence 467999999999764321 0 000 113458754 4899999999975 4799999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|++++|.+++ .+.+||+|++++|+|+.|...++.. |++++.++++ .+++++. +++++++
T Consensus 71 ~Gs~~al~~~~--~~~~gd~v~v~~P~y~~~~~~~~~~-g~~~~~v~~~----------~~~~~~~-------~~~~v~l 130 (330)
T PRK05664 71 AGSQAAIQALP--RLRAPGRVGVLSPCYAEHAHAWRRA-GHQVRELDEA----------EVEAALD-------SLDVLVV 130 (330)
T ss_pred cCHHHHHHHHH--HccCCCEEEEcCCChHHHHHHHHHc-CCeEEEechh----------hHhhhhc-------CCCEEEE
Confidence 99999999885 3579999999999999999999986 9999998753 3444442 5678999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++++|+++|++++++||+||+|.++ .. . .++..+. ..+++++++||||+||+||+
T Consensus 131 ~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~--~~-~--~s~~~~~------~~~~vi~~~SfSK~~gl~Gl 199 (330)
T PRK05664 131 VNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDN--TP-Q--HSLAACA------HRPGLIVLRSFGKFFGLAGA 199 (330)
T ss_pred eCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccC--CC-c--ccccccc------cCCCEEEEeeccccccCCCc
Confidence 999999999999999999999999999999999999763 22 1 2444442 24789999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||+++ ++.+.+.+......+.+++++|.++..+|.+..+ .++.++.++++++++.+.|.+.|++.. +..++|
T Consensus 200 RiG~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~-~~~~~f 273 (330)
T PRK05664 200 RLGFVLA-EPALLRALAELLGPWTVSGPTRWLAQAALADTPW----QRRQRERLLAASQRLAALLRRHGLTPA-GGCALF 273 (330)
T ss_pred ceEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHCCCccc-CCcceE
Confidence 9999999 4566666666555556889999999999987554 456678889999999999998886532 222389
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+|++++. ..++++.|. ++||.|++ |+ .++++||+++. ++++++++++.|+.+.++
T Consensus 274 ~~~~~~~---------~~~~~~~l~-~~gi~v~~---f~--~~~~iRis~~~-~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 274 QWVRTED---------AAALHEFLA-RRGILTRL---FE--QPASLRFGLPA-DEADWARLDQALLAYRKE 328 (330)
T ss_pred EEEecCC---------HHHHHHHHH-HCCeEEEE---CC--CCCeEEEECCC-CHHHHHHHHHHHHHHHhh
Confidence 9998752 225666655 66999984 43 35799999984 667788888888765443
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=345.71 Aligned_cols=326 Identities=19% Similarity=0.340 Sum_probs=255.1
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.|+|+++ ++.+.+.+.+. ......|+++.+ ++||+++|++++ +++++|+
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 90 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKE-------------LSKIHRYPEPDA-PELREALSKYTG--------VPVENII 90 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHH-------------HHhhcCCCCCCH-HHHHHHHHHHhC--------CCHHHEE
Confidence 457899999999876 34444444331 112356877654 999999999986 5789999
Q ss_pred E-eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 M-SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 i-t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+ |+|+++++..++.+++++||.|+++.|+|+.+...++.. |++++.++.+ .+|.+|++.+++.+.+ ++++
T Consensus 91 ~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~-g~~~~~~~~~--~~~~~~~~~l~~~~~~------~~~~ 161 (361)
T PRK00950 91 VGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAH-GAKPVYAKRE--EDFSLDVDSVLNAITE------KTKV 161 (361)
T ss_pred EeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEeecC--CCCCcCHHHHHHHhcc------CCCE
Confidence 9 799999999999999999999999999999988877775 9999999854 3578999999988753 6889
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++.+++ +++|+++|+||+|.++. + ....+ +.. ..+++++++||||.||+
T Consensus 162 v~~~~p~nptG~~~~~~~l~~l~---~~~~~~li~De~y~~~~--~-~~~~~---~~~-----~~~~vi~~~S~SK~~g~ 227 (361)
T PRK00950 162 IFLCTPNNPTGNLIPEEDIRKIL---ESTDALVFVDEAYVEFA--E-YDYTP---LAL-----EYDNLIIGRTFSKVFGL 227 (361)
T ss_pred EEEeCCCCCCCCCcCHHHHHHHH---HHCCcEEEEECchhhhC--c-cchHH---HHH-----hcCCEEEEEeehHhhcC
Confidence 99999999999999977666654 57799999999998753 3 22222 222 34789999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+|+||+++ ++.+.+.+......+.+++++|.++..++.+.++ +++.++.++++++.+.+.|. +.+. +.+
T Consensus 228 ~GlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~r~~l~~~l~---~~~~-~~~ 298 (361)
T PRK00950 228 AGLRIGYGFV-PEWLIDYYMRAKTPFSLTRLSQAAAIAALSDKEY----IEKSIEHGIKSREYLYNELP---FKVY-PSE 298 (361)
T ss_pred chhhcchhcC-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHhhcC---eeEC-CCc
Confidence 9999999999 5556666655555556888999998888887554 45566677888888888775 5554 456
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
++|+|++++. .+ ..++++.|.+ +||.|+||..|+..+++++||+++ +.+++++++++|++++
T Consensus 299 ~~~i~~~~~~-~~------~~~~~~~l~~-~gv~v~~~~~f~~~~~~~lRis~~--~~~~~~~l~~~L~~il 360 (361)
T PRK00950 299 ANFVLVDVTP-MT------AKEFCEELLK-RGVIVRDCTSFRGLGDYYIRVSIG--TFEENERFLEILKEIV 360 (361)
T ss_pred ceEEEEECCC-CC------HHHHHHHHHH-CCEEEeeCCccCCCCCCeEEEECC--CHHHHHHHHHHHHHHh
Confidence 7899999942 11 3377888775 599999999886555679999998 7789999999998875
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=339.56 Aligned_cols=316 Identities=18% Similarity=0.290 Sum_probs=242.3
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++|+|+.|+|+++ ++.+.+.+.+.... .....|++ .|.++||+++|+|++ +++++|++|
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~-~g~~~lr~~ia~~~~--------~~~~~I~~t 78 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKR-----------VPFNRYPH-ITSDPLREAIAEFYG--------LDAENIAVG 78 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhc-----------CccccCCC-CCHHHHHHHHHHHhC--------cCcceEEEc
Confidence 5699999999875 34444444321100 12457875 689999999999986 688999999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+|+++++..++.++ +||+|+++.|+|+.|...++.. |.+++++++++ +|.+|++.+++.+ .+++++++
T Consensus 79 ~G~~~~l~~~~~~~--~gd~V~v~~P~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~~-------~~~~~v~~ 146 (337)
T PRK03967 79 NGSDELISYLVKLF--EGKHIVITPPTFGMYSFYAKLN-GIPVIDVPLKE--DFTIDGERIAEKA-------KNASAVFI 146 (337)
T ss_pred CCHHHHHHHHHHHh--CCCeEEEeCCChHHHHHHHHHc-CCeEEEeecCC--CCCcCHHHHHHhc-------cCCCEEEE
Confidence 99999999998876 7999999999999888877765 99999999864 4789999998754 26789999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++.+++ +++++||+||+|.++ .. ..+.+ ... ..+++|+++||||.||++|+
T Consensus 147 ~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~--~~-~~~~~---~~~-----~~~~vi~l~S~SK~~~l~Gl 211 (337)
T PRK03967 147 CSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEF--SG-KSLIG---LID-----EYPNLILLRTFSKAFGLAGI 211 (337)
T ss_pred eCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhh--cc-cchHH---HHh-----hCCCEEEEecchHhhcchhh
Confidence 99999999999987777665 369999999999884 33 22222 222 24689999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||+++ ++.+.+.+......+.++.++|.++..++.+.++ ..+.++.+.++++.+.+.|.+. ..+.+++|
T Consensus 212 RiG~iv~-~~~~i~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~r~~l~~~L~~~----~~~~~~~~ 282 (337)
T PRK03967 212 RAGYAIA-NEEIIDALYRIKPPFSLNILTMKIVRLALDHYDL----IEERIDYIIKERERVRRELGEY----AYPSDANF 282 (337)
T ss_pred hheeeec-CHHHHHHHHhhcCCCCCCHHHHHHHHHHHhCHHH----HHHHHHHHHHHHHHHHHHhccC----cCCCCCcE
Confidence 9999999 5666666666655667889999999999986544 3344445566778888888764 23577899
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|++++ +.+.|+ ++||.|+++.. ..++++||+++ +.++.++++++|+++.+..
T Consensus 283 ~~~~~~-------------~~~~l~-~~gi~v~~~~~---~~~~~~Ri~~~--~~~~~~~l~~~l~~~~~~~ 335 (337)
T PRK03967 283 LLLKLD-------------AYDYLL-ENGIVVRKLSG---RLEGHIRVTVG--KREENDEFIKALKEIKEGY 335 (337)
T ss_pred EEEhHH-------------HHHHHH-HCCEEEEeCCC---CCCCeEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence 998763 345555 46999998653 23569999998 6777888888888776654
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=322.98 Aligned_cols=348 Identities=19% Similarity=0.227 Sum_probs=271.3
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhc
Q 011570 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 85 ~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~ 164 (483)
....+|++..|.++|+.-|.++.+..... ......+|++|+|.+.+++.+++.++++||.|+++.++|+.....++..
T Consensus 91 s~alQYg~s~G~peLl~fik~h~~~~ih~-p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~- 168 (472)
T KOG0634|consen 91 SRALQYGQSSGIPELLLFIKDHNRPTIHA-PPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEAL- 168 (472)
T ss_pred hhhhccccccCcHHHHHHHHHhccccccC-CCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhcccc-
Confidence 34579999999999999999966522221 2345569999999999999999999999999999999999999988886
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhc---CCceeEEEEeCC--CCCCcCCCCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQES---NIRIKGVLITNP--SNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~~~~~i~l~~P--~NPtG~~~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
|+++++|+++++| +++|.|++.+..+... .+++ .|++|-| +||||..++.+++++|.++|++|+++||+||
T Consensus 169 gv~~ipv~md~~G---i~pE~l~~il~~w~~~~~k~~~p-~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 169 GVKIIPVKMDQDG---IDPESLEEILSNWKPGSYKKPKP-HVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred CceEEeccccCCC---CCHHHHHHHHhcCCcccccCCCC-eEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 9999999998776 9999999999887654 2344 4777877 8999999999999999999999999999999
Q ss_pred ccccCccCC-------CCCcchHHHhhh----h-ccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc
Q 011570 240 IYAATVFTK-------ESSFVSIAEIID----Q-DIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF 307 (483)
Q Consensus 240 ay~~~~~~~-------~~~~~s~~~l~~----~-~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~ 307 (483)
+|..+.|.. +.+..+...+.. . ++.....+||.+.||||.++ ||+|+||+.+++..+...+.....-
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhccee
Confidence 998777662 011112111111 0 01113579999999999997 9999999999665665555443221
Q ss_pred -CCCChHHHHHHHHhcCChhH--HHHHHHHHHHHHHHHHHHHHHhhhcC---C-ceeecCCceEEEeeecCc--hhhccC
Q 011570 308 -GLVSSQTQHLIATMLSDDQF--VEKFIAESAKRIAERHKAFTWGLSQV---G-IGCLKSNAGLFLWMDLHH--LLKEQT 378 (483)
Q Consensus 308 -~~~s~~~q~~~~~~l~~~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~---g-i~~~~~~~g~f~~~~l~~--~~~~~~ 378 (483)
...|..+|.++-++|...+. ..+|+.+.+..|..|++.+..+|.+. + .++.+|.+|+|+|++++- ....+.
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~~~ 403 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYINFDTKKS 403 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccccccccc
Confidence 23677888888888765321 14789999999999999999999886 5 688999999999999971 111122
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCC-CC----CEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCP-NP----GWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~----~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+.+..++....+.+.||.+.+|++|... +. -++|++++..+.|+++++++|+..++++...
T Consensus 404 i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~ 469 (472)
T KOG0634|consen 404 INQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFI 469 (472)
T ss_pred hHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2323455555666789999999999876 22 2899999988999999999999999988753
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.25 Aligned_cols=327 Identities=22% Similarity=0.375 Sum_probs=262.5
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
++++|+|++++|+++ ++.+.+++.+.. .....|+++.+ +++|+++|++++ +++++|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~-------------~~~~~y~~~~~-~~lr~~ia~~~~--------~~~~~i~ 75 (346)
T TIGR01141 18 GKEVIKLNSNENPFGPPPKAKEALRAEA-------------DKLHRYPDPDP-AELKQALADYYG--------VDPEQIL 75 (346)
T ss_pred CCceEEccCCCCCCCCCHHHHHHHHHhH-------------HHhhcCCCCCH-HHHHHHHHHHhC--------cChHHEE
Confidence 357899999999886 444555554421 12357887766 999999999987 5789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|++++|+|+.+...++.. |.+++.++++++ +.+|++.+++++. +++++|
T Consensus 76 ~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~-g~~~~~~~~~~~--~~~d~~~l~~~~~------~~~~~v 146 (346)
T TIGR01141 76 LGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIH-GAEVVKVPLDED--GQLDLEDILVAID------DKPKLV 146 (346)
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEeccCCC--CCCCHHHHHHhcC------CCCCEE
Confidence 9999999999999999999999999999999888777775 999999998753 6789999998764 378999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++.++++.++ +++++|+||+|.++.+.. .+.+.. . ..+++++++|+||.||++
T Consensus 147 ~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~--~~~~~~---~-----~~~~~i~~~S~sK~~g~~ 215 (346)
T TIGR01141 147 FLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSGEP--STLPLL---A-----EYPNLIVLRTLSKAFGLA 215 (346)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcCCc--cHHHHH---h-----hCCCEEEEehhhHhhhch
Confidence 99999999999999999999999887 799999999998753321 212221 1 235789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~ 362 (483)
|+|+||+++ ++.+.+.+......+.+++++|.++..++.... +.++.+++++++++.+.+.|.++ |+++.+ .+
T Consensus 216 G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~ 289 (346)
T TIGR01141 216 GLRIGYAIA-NAEIIDALNKVRAPFNLSRLAQAAAIAALRDDD----FIEKTVEEINAERERLYDGLKKLPGLEVYP-SD 289 (346)
T ss_pred hhhceeeec-CHHHHHHHHhccCCCCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCCCEECC-Cc
Confidence 999999999 566666666555556678999999989988754 35677788899999999999887 888654 45
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
|+|+|++++. + ..++++.|. ++||.+.||..|+.. ++++|++++ ++++++++++.|+
T Consensus 290 g~~~~~~~~~--~------~~~~~~~L~-~~gI~v~~g~~f~~~-~~~iRls~~--~~~~i~~~~~~l~ 346 (346)
T TIGR01141 290 ANFVLIRFPR--D------ADALFEALL-EKGIIVRDLNSYPGL-PNCLRITVG--TREENDRFLAALR 346 (346)
T ss_pred CCEEEEecCC--C------HHHHHHHHH-HCCeEEEeCCCcCCC-CCeEEEecC--CHHHHHHHHHHhC
Confidence 6899999874 1 236777776 469999999988644 789999997 7889999988763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=336.33 Aligned_cols=313 Identities=21% Similarity=0.300 Sum_probs=250.2
Q ss_pred CCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 45 PNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
..++++|+.++|+++++..+.. .....+|+++.+ ++||+.+|++++ +++++|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 69 (330)
T TIGR01140 16 PEDWLDFSTGINPLGPPVPPIP-----------------ASAWARYPDPEY-DELRAAAAAYYG--------LPAASVLP 69 (330)
T ss_pred hhheeEccccCCCCCCChhhcc-----------------hHHHhhCCCccH-HHHHHHHHHHhC--------CChhhEEE
Confidence 3467999999998876521110 124567988776 999999999986 57899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..+..+ +.+| .|++++|+|..+...++.. |.+++.++ |++.+++.+. ++++|+
T Consensus 70 t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~-g~~~~~~~---------d~~~l~~~~~-------~~~~v~ 130 (330)
T TIGR01140 70 VNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAA-GHEVVELP---------DLDRLPAALE-------ELDVLV 130 (330)
T ss_pred CCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHc-CCEEEEeC---------CHHHHHhhcc-------cCCEEE
Confidence 99999999998766 5677 6999999999999988876 99998887 6788888763 567899
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.+++.+++++|+++|+++|++||+||+|.++.+. .++..+.. ..+++|+++||||.||++|
T Consensus 131 i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-----~~~~~~~~-----~~~~~i~~~S~SK~~g~~G 200 (330)
T TIGR01140 131 LCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD-----ASLAPQAA-----RFPGLVVLRSLTKFFGLAG 200 (330)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc-----cchhhHhc-----cCCCEEEEEecchhhcCch
Confidence 9999999999999999999999999999999999999875432 13333322 3478999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g 363 (483)
+|+||++++ +.+.+.+......+.+++++|.++..++.+.++ .++.+++++++++.+.+.|++++ +++. +.+|
T Consensus 201 ~R~G~i~~~-~~~~~~l~~~~~~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~ 274 (330)
T TIGR01140 201 LRLGFVVAH-PALLARLREALGPWTVNGPARAAGRAALADTAW----QAATRARLAAERARLAALLARLGGLEVV-GGTA 274 (330)
T ss_pred hhhhheeCC-HHHHHHHHhcCCCCCchHHHHHHHHHHHhchHH----HHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCC
Confidence 999999994 556666666655566889999999999987665 45567888999999999999987 5554 4567
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
+|+|++++. ..+++++|++ +||.+.||..|.....+++||+++. +.++ +.++++|
T Consensus 275 ~f~~~~~~~---------~~~l~~~l~~-~gi~v~pg~~f~~~~~~~iRi~~~~-~~~~-~~~~~~l 329 (330)
T TIGR01140 275 LFLLVRTPD---------AAALHEALAR-RGILIRDFDNFPGLDPRYLRFALPT-DEEN-DRLEEAL 329 (330)
T ss_pred eEEEEEcCC---------HHHHHHHHHH-CCEEEEECCCCCCCCCCEEEEEecC-HHHH-HHHHHhh
Confidence 999998873 2377888876 5999999999964456799999983 3333 7777665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=286.35 Aligned_cols=345 Identities=22% Similarity=0.376 Sum_probs=273.1
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhhc
Q 011570 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 86 ~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~ 164 (483)
.+..|+...|.+-+|+.+|+|+.++.| ++.+|++|++|.|++.++..++..++ ++.+-|++|.|.|+.|...+..+
T Consensus 105 s~GaYS~SqGv~~vR~~VA~~I~rRDG--~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~- 181 (475)
T KOG0258|consen 105 SLGAYSDSQGVPGVRKHVAEFIERRDG--IPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLL- 181 (475)
T ss_pred cccccccccCChhHHHHHHHHHHhccC--CCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHh-
Confidence 456899999999999999999999988 78899999999999999999998876 56789999999999999999987
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|...+++.++++.+|.+|.++|++.+.++. ++.+++++++.||.||||.+++++.+++|+.+|.+++++++.||+|.+.
T Consensus 182 ~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~N 260 (475)
T KOG0258|consen 182 GGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDN 260 (475)
T ss_pred CCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhh
Confidence 999999999999999999999999999887 6789999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcchHHHhhhhccccCCCe--EEEEecCccc-cCCCCceEEEEEec--ChHHHHHHHHhhhc-CCCChHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNL--IHIVYSLSKD-MGFPGFRVGIIYSY--NDQVVSCARKMSSF-GLVSSQTQHLI 318 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~--vi~~~S~SK~-~g~~GlRiG~li~~--~~~l~~~~~~~~~~-~~~s~~~q~~~ 318 (483)
+|..+.+|.|+.....+|+....++ ++.++|.||. +|-.|.|-||+-.- +..+.+.+.++.+. ...+...|..+
T Consensus 261 vy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~v 340 (475)
T KOG0258|consen 261 VYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLV 340 (475)
T ss_pred ccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhh
Confidence 9988668999988777775333334 4567899999 56689999998652 33444444443332 22333445555
Q ss_pred HHhcCC-----hhH--HHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhc------cChHHHHH
Q 011570 319 ATMLSD-----DQF--VEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKE------QTYEAEMA 384 (483)
Q Consensus 319 ~~~l~~-----~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~------~~~~~~~~ 384 (483)
-.++.. ..+ ...........++++...+.+.++.+ |+.+.+++|.||++.++.-..+. ....-+.-
T Consensus 341 dl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A~~~~~~PD~F 420 (475)
T KOG0258|consen 341 DLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAAKALGIAPDEF 420 (475)
T ss_pred ceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHHHHhCCCCcHH
Confidence 445443 111 12223445677788888899999998 99999999999998776422111 11111345
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCC-CCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPN-PGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~-~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.|.+||+..||.+.||+.|+... .-++|.+|- +.. + +.+++++++-.+..
T Consensus 421 Yc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiL--p~~-~-~~i~~~~~fH~~f~ 471 (475)
T KOG0258|consen 421 YCLKLLEATGICVVPGSGFGQKEGTYHFRTTIL--PPG-L-EIIEKFKKFHAEFM 471 (475)
T ss_pred HHHHHHHhcCeEEecCCCCCCCCceeEEEEeec--Cch-h-HHHHHHHHHHHHHH
Confidence 78899999999999999998542 236999996 333 5 88888888776654
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=265.76 Aligned_cols=305 Identities=19% Similarity=0.301 Sum_probs=242.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
|+++. ...++.++++- -++++|+|+++-|+.+.|..+++..+.|| ++|+...|+|+.|...+... ++++
T Consensus 66 ~~d~r-nk~ls~a~~~d--------kpLt~dnic~GvGsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A~iN-d~eV 135 (375)
T KOG0633|consen 66 YPDPR-NKRLSDALAQD--------KPLTSDNICVGVGSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDAAIN-DAEV 135 (375)
T ss_pred cCCcc-cchhhhhcccC--------CCCCccceEEecCcHHHHHHHHhheecCCccceeecCCcceeEEEEeecC-CceE
Confidence 45443 35555555543 35799999999999999999999999999 99999999999998777764 9999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.+|++. +|.+|.+++.+.+.. ...+|.+++|+|+||||..+..+++.+|++... |.+|++||+|.+ |.+
T Consensus 136 vkvpl~p--dF~lnvdai~evl~~----ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~--nglVVvDEAYid--Fsg 205 (375)
T KOG0633|consen 136 VKVPLNP--DFSLNVDAIAEVLEL----DSKIKCIFLTSPGNPTGSIIKEDDILKILEMPD--NGLVVVDEAYID--FSG 205 (375)
T ss_pred EEecCCC--CccccHHHHHHHHhc----cccceEEEEcCCCCCCcccccHHHHHHHHhCCC--CcEEEEeeeeEe--ecc
Confidence 9999986 799999999988764 357899999999999999999999999998654 789999999988 554
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (483)
. .|...+.. .++|++++.+|||.||++|+|+||... +..+++.+..+..++++|.++..++.+++++..
T Consensus 206 -~--~S~~~lV~-----kYpNLivlqTlSKsfGLAGiRvG~~~~-~~~ia~iln~~KaPYNiS~~~s~~AL~Als~~n-- 274 (375)
T KOG0633|consen 206 -V--ESRMKLVK-----KYPNLIVLQTLSKSFGLAGIRVGYGAF-PLSIAEILNRAKAPYNISVAGSVAALAALSDSN-- 274 (375)
T ss_pred -c--cccchHhH-----hCCceeehhhhhhhcCcceeEeecccc-cHHHHHHHHhccCCccccchhHHHHHHhcCccc--
Confidence 2 35555666 689999999999999999999999998 677888888888777788888888888888543
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC-CCCCCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP-GSSFHC 405 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-g~~f~~ 405 (483)
-+.++..++.+.+.|.++.+.|.+. ++. +..+...+|+.+++....+. .+..+..+++.++||.|+- |+.-
T Consensus 275 ~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~----~akkly~q~at~~gVvVRfrgse~-- 348 (375)
T KOG0633|consen 275 GKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNG----MAKKLYKQDATKMGVVVRFRGSEE-- 348 (375)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcH----HHHHHHHHHHHhcceEEEEcCCcc--
Confidence 2346677788888889999999987 333 22333346899998754221 2336677778889999983 1111
Q ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 406 PNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 406 ~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
...|++||+++ ++|+...+++-|+++
T Consensus 349 ~c~G~lRitvG--t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 349 GCKGYLRITVG--TPEENTVLMKCLKQF 374 (375)
T ss_pred ccceeEEEEcC--CcccchHHHHHHHhh
Confidence 13579999999 778888888888875
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=282.87 Aligned_cols=318 Identities=30% Similarity=0.544 Sum_probs=253.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
...|++..|..++++.++++++..++ .+..++++++++|+++++..++.++.++||+|+++.|+|..+...++.. |.
T Consensus 29 ~~~~~~~~~~~~l~~~l~~~l~~~~~--~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~-~~ 105 (350)
T cd00609 29 LLGYYPDPGLPELREAIAEWLGRRGG--VDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLA-GA 105 (350)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CC
Confidence 35678888999999999999997665 3456789999999999999999999999999999999999999999886 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++.++.+.+..+.+.++..+ ++++++|++++|+||||.+++.+++.+|+++|+++|+++|+|++|+.+.+
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 106 EVVPVPLDEEGGFLLDLELLEAAK------TPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred EEEEEecccccCCccCHHHHHhhc------CccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 999999876554433324444433 24789999999999999999999999999999999999999999988765
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSD 324 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~ 324 (483)
.. ... +...... ..+.+++++|+||.++++|+|+||++++++.+.+.+.....+ +..+...+.++..++..
T Consensus 180 ~~-~~~-~~~~~~~-----~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (350)
T cd00609 180 DG-EPP-PALALLD-----AYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDD 252 (350)
T ss_pred CC-ccc-ccccCcC-----ccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC
Confidence 54 221 1111111 346789999999999989999999999654666666555444 45777888888888876
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee-ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC-LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~-~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
.. +..++.++.+.++++++.+.|.+.+... ..+.+|+++|++++... ..+...+++.++||.+.++..|
T Consensus 253 ~~---~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~l~~~gi~i~~~~~~ 322 (350)
T cd00609 253 GE---EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGD-------DEEFLERLLLEAGVVVRPGSAF 322 (350)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCC-------hHHHHHHHHHhCCEEEeccccc
Confidence 52 4467778888999999999999886543 56778899999987531 1245666777889999999887
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011570 404 HCPNPGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 404 ~~~~~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
....+.++|++++.. .++++.++++|+
T Consensus 323 ~~~~~~~iRi~~~~~-~~~i~~~~~al~ 349 (350)
T cd00609 323 GEGGEGFVRLSFATP-EEELEEALERLA 349 (350)
T ss_pred ccCCCCeEEEEeeCC-HHHHHHHHHHhh
Confidence 654567999999865 999999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=287.89 Aligned_cols=319 Identities=16% Similarity=0.228 Sum_probs=237.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
..|++..|.++||++++++++ .+++++|+|+++++.+++.++++||| |++++|.|..|...+... |++
T Consensus 72 ~~Y~~~~g~~~Lreaia~~~~----------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~-G~~ 139 (460)
T PRK13238 72 EAYAGSRSYYRLEDAVKDIFG----------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELN-GAT 139 (460)
T ss_pred cccCCCCCHHHHHHHHHHHhC----------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHc-CCE
Confidence 579999999999999999986 35799999999999999999999999 999999999998888875 999
Q ss_pred EEEeecCCC------CCcc--cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCc-CCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 LVPVVCDSS------NDFK--VTMEALEAAYEKAQESNIRIKGVLITNPSNPLG-TFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 ~~~v~~~~~------~~~~--~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
++.+++++. ++|. +|++.|++.+.+... .++++|++++|||||| .+++.+++++|.++|++||++||+|
T Consensus 140 ~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~D 217 (460)
T PRK13238 140 AVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGA--ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVID 217 (460)
T ss_pred EEEEeccccccccccccccCCcCHHHHHHHHhhcCC--CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999998642 3565 999999999974211 2689999999999998 9999999999999999999999999
Q ss_pred cccc--cCccCCC----CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE------EEEEecChHHHHHHHHhh-
Q 011570 239 EIYA--ATVFTKE----SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV------GIIYSYNDQVVSCARKMS- 305 (483)
Q Consensus 239 eay~--~~~~~~~----~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi------G~li~~~~~l~~~~~~~~- 305 (483)
+++. ..+|... ....++.++. +.++|++|.+.++|+|+ |+++++++.+.+.++...
T Consensus 218 aa~~~e~a~f~~~~e~g~~~~si~~i~-----------~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~ 286 (460)
T PRK13238 218 AARFAENAYFIKQREPGYKDKSIKEIA-----------REMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCI 286 (460)
T ss_pred CcchhhhhhhhhhccccccCCCHHHHh-----------hhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhccc
Confidence 9663 2334210 1223443332 22456666666666664 355654456666665542
Q ss_pred ------hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---c
Q 011570 306 ------SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK---E 376 (483)
Q Consensus 306 ------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~---~ 376 (483)
.++..+...|.+++..+.+.- -+.++..+ .+++++|.+.|.+.|+++..|.||+|+++++..... .
T Consensus 287 ~~~g~~t~~g~~~~~~~Ala~~l~e~~-~~~~~~~~----~~~~~~l~~~L~~~G~~~~~p~Gg~~v~~d~~~~~~~~~~ 361 (460)
T PRK13238 287 LYEGFPTYGGLAGRDMEALAVGLYEGM-DEDYLAYR----IGQVEYLGEGLEEAGVPIQTPAGGHAVFVDAGKFLPHIPA 361 (460)
T ss_pred ccCCcccccCcHHHHHHHHHhhHHHhh-ChHHHHHH----HHHHHHHHHHHHHCCCCeEccCCceEEEEEchhcCCCCCC
Confidence 122234455777776554310 01223332 335689999999999999999999999999975421 1
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCCCC-----------CCEEEEEecc--CCHHHHHHHHHHHHHHHHHh
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPN-----------PGWFRVCFAN--MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~-----------~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+. ..+|+.+|+++.||.+.|+..|..+. ...+||++.. .+.++++.+.++|+++.++.
T Consensus 362 ~~~~-~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~ 434 (460)
T PRK13238 362 EQFP-AQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENR 434 (460)
T ss_pred CCCc-hHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhH
Confidence 1111 35899999999999999988776432 3679999974 29999999999999866443
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=250.32 Aligned_cols=324 Identities=19% Similarity=0.286 Sum_probs=242.4
Q ss_pred cccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC---CCC--eEEEe-CCCCcChHH
Q 011570 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD---PGD--AFLVP-TPYYPGFDR 158 (483)
Q Consensus 85 ~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~---~gd--~Vlv~-~P~y~~~~~ 158 (483)
..+.+|..++|...|.+++++++++.+| +.+++.||.+|+|++.+.+-++..|.. .|+ .|+.| .|.|-+|.+
T Consensus 65 e~~cnY~~pQG~~~li~ala~~l~~~yg--wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d 142 (417)
T COG3977 65 EALCNYDGPQGKAVLIDALAKMLRREYG--WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD 142 (417)
T ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHhC--CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccc
Confidence 3567999999999999999999999999 557999999999999999999988853 243 46555 799988876
Q ss_pred HHhhhcCcEEEEee----cCCCC--CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 159 DLRWRTGVQLVPVV----CDSSN--DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 159 ~~~~~~G~~~~~v~----~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
+.-. +--+|.+. +.+++ .|.+|.++|.-. .++.+|+++-|.||||.|++.+|+.+|-++|++||
T Consensus 143 ~~l~--~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~--------e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~g 212 (417)
T COG3977 143 AGLE--EDLFVSAKPNIELLPAGQFKYHVDFEHLHIG--------ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHG 212 (417)
T ss_pred cccC--ccceeeccCCcccccccceeeccCHHHcccc--------cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcC
Confidence 5321 11122211 22233 356787777542 37889999999999999999999999999999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCC
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLV 310 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~ 310 (483)
+.+|+|.+|+.- |.+ --|..+.-+. .+|+|.+.|+||. |+||.|+|.+++ ++.++..+..+... ...
T Consensus 213 iPliIDnAYg~P-FP~-iifsd~~~~w-------~~NiilC~SLSK~-GLPG~R~GIiIa-ne~viqaitnmn~iisLap 281 (417)
T COG3977 213 IPLIIDNAYGVP-FPG-IIFSDATPLW-------NENIILCMSLSKL-GLPGSRCGIIIA-NEKVIQAITNMNGIISLAP 281 (417)
T ss_pred CcEEEecccCCC-CCc-eecccccccC-------CCCEEEEeehhhc-CCCCcceeEEEc-cHHHHHHHHhccceeeecC
Confidence 999999999743 443 2222222232 3789999999995 899999999999 67777777665443 235
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
+.+.+++++.+++.++.++-.-+..+--|+.+.+.....|++ ..+.++.|+|..|+|+-+.+..- .+.+++
T Consensus 282 ~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI-----tt~~LY 356 (417)
T COG3977 282 GRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI-----TTEELY 356 (417)
T ss_pred CCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC-----CHHHHH
Confidence 667889999999988764332233445556665555555544 46788899999999997765321 244778
Q ss_pred HHHHHhcCeEeeCCCCCCCCC-------CCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 387 RVIINEVKLNVSPGSSFHCPN-------PGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~-------~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++|.+ .||++.||+.|.+.- ..++|+++. .+++.++.++++|++.+++.-
T Consensus 357 q~LKa-~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~-~~~~~ie~Gva~lae~ve~~y 413 (417)
T COG3977 357 QRLKA-RGVLMVPGHYFFPGLDKEWPHTHQCMRMNYV-PEPEKIEKGVAILAEEVERAY 413 (417)
T ss_pred HHHHh-CeEEEecccccCCCCCCCCCCccceEEEecC-CCHHHHHHHHHHHHHHHHHHH
Confidence 87765 599999999987642 247999997 488999999999999988764
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=262.36 Aligned_cols=282 Identities=12% Similarity=0.133 Sum_probs=206.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEe---CCCCcChHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP---TPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~---~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
+.+|++.+|+|++ ++++++++++|+++++..++.++++|||.|+++ .|+|..|...++.. |++++.+
T Consensus 56 ~~~Le~~lA~~~g--------~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~-ga~~~~~- 125 (346)
T TIGR03576 56 EEKVQELGREHLG--------GPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLA-GAEYFES- 125 (346)
T ss_pred HHHHHHHHHHHcC--------CCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHc-CCEEecc-
Confidence 4566666666655 578999999999999999999999999999975 57999998888875 8876432
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+++.++. ..++++|+++ ++||+|.+++.+++++|+++|+++|++||+||+|+.++... ...
T Consensus 126 --------~~l~~l~~--------~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~-~~~ 187 (346)
T TIGR03576 126 --------DELSELKK--------IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRL-YGQ 187 (346)
T ss_pred --------CCHHHHhh--------CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcccccccc-CCC
Confidence 13444321 1256777774 57999999999999999999999999999999998754321 111
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcC--CCChHHHHHHHHhcCChhHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG--LVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
.+.... ...+++.|||| +++|+|+||++++ +.+++.+.+....+ .+++++|.++.++|+...
T Consensus 188 ~~~~~~---------~~divv~s~SK--alaG~r~G~v~~~-~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~---- 251 (346)
T TIGR03576 188 PPALDL---------GADLVVTSTDK--LMDGPRGGLLAGR-KELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFE---- 251 (346)
T ss_pred CCHHHc---------CCcEEEeccch--hccccceEEEEeC-HHHHHHHHHhhcCcccCccHHHHHHHHHHHhhcc----
Confidence 122222 12356779999 5699999999994 56666666554332 257888888888886422
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
.+..++.++++++++.+.+.. +.+.++.+| |+|++++.. +..+++..+++++||.|+||+.|. ..++|
T Consensus 252 -~~~~~~~l~~r~~~~~~~l~~--~~~~~~~~~-f~~~~~~~~-------~~~~~~~~ll~~~gV~v~~~~~f~-~~~~~ 319 (346)
T TIGR03576 252 -LSRIRDAFKRKEEVYLRLFDK--LNVERTPTG-FVIKGVEEE-------KLIEIGLDLLRNYGIITITAVGMP-GASKT 319 (346)
T ss_pred -HHHHHHHHHHHHHHHHHHHHh--CCCCcCCCe-EEEEeCCCC-------CHHHHHHHHHHhCCEEEeCCcccC-CCCCe
Confidence 245567788888888888873 555565665 899998741 123677788889999999998884 34679
Q ss_pred EEEEeccCCHH---HHHHHHHHHHHHH
Q 011570 411 FRVCFANMDDR---TMEIALSRITSFM 434 (483)
Q Consensus 411 iRis~~~~~~e---~l~~~l~~L~~~l 434 (483)
+||+++. +++ +++.++++|++-+
T Consensus 320 vRis~~~-~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 320 LRFDLAA-KDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred EEEEEec-ChHHhcCHHHHHHHHHhcc
Confidence 9999983 333 6888888887643
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=263.00 Aligned_cols=324 Identities=15% Similarity=0.191 Sum_probs=222.1
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
+|||+.|+|+.+++.+.+++.... .....|++..+..+|+++||++++ + +.+++++|
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~-------------~~~~~Y~~~~~~~~L~~~la~~~g--------~--~~~~v~~~ 57 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAP-------------VGDDVYGDDPTVNALQDYAAELSG--------K--EAALFLPT 57 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhcc-------------CCCcccCCCHHHHHHHHHHHHHhC--------C--CeEEEeCc
Confidence 489999999998777777665421 123568655678999999999976 2 34467788
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcC-hHHH-HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPG-FDRD-LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~-~~~~-~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
+++++.+++.+++.+||+|+++.|+|.. |... .....+++++.++.++ +|.+|+++|++++.+...+..++++|++
T Consensus 58 g~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~lv~l 135 (333)
T PRK10534 58 GTQANLVALLSHCERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAA--DGTLPLDKVAAKIKPDDIHFARTRLLSL 135 (333)
T ss_pred hHHHHHHHHHHhcCCCCeeEEechhhhhHhcCCchHHhcCceEEeecCCC--CCCCCHHHHHHhhcccCcCcccceEEEE
Confidence 8888888888889999999999988853 3221 2333236777777653 6889999999988531111115789999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
|||+ ||.+++.+++++|+++|++++++||+||+|....... .. .+...+.. ..++++ .||||.||++
T Consensus 136 ~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~-~~-~~~~~~~~-----~~~~~~--~s~SK~~~~~-- 202 (333)
T PRK10534 136 ENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVA-YG-CELKEITQ-----YCDSFT--ICLSKGLGTP-- 202 (333)
T ss_pred ecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHH-cC-CCHHHHHh-----cCCEEE--EEeEcCCCCc--
Confidence 9876 4999999999999999999999999999986211100 01 12222221 124444 3899998864
Q ss_pred eEE-EEEecChHHHHHHHHhhhcCC----CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 286 RVG-IIYSYNDQVVSCARKMSSFGL----VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 286 RiG-~li~~~~~l~~~~~~~~~~~~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+| |+++ ++++.+.+++....+. .+.++|.++...+.+ .. +..+...+.++++.+.|+++|+++.+|
T Consensus 203 -~G~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~~~g~~~~~~ 273 (333)
T PRK10534 203 -VGSLLVG-NRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLREAGADVMRQ 273 (333)
T ss_pred -ccceEEc-CHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 68 6777 6667777666554322 223445554444432 11 222233456689999999999998877
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
+ ++|+|++++.. ...++. ++++++||.|+||. ++|++... .+++++++++++|++++.
T Consensus 274 ~-~nfv~~~~~~~-------~~~~~~-~~l~~~gi~v~~~~--------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 274 D-TNMLFVRVGEE-------QAAALG-EYMRERNVLINASP--------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred C-ceEEEEECCch-------hHHHHH-HHHHHcCeeecCCc--------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 5 67999998731 122454 45556799999873 48887743 599999999999997764
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=254.45 Aligned_cols=321 Identities=17% Similarity=0.258 Sum_probs=232.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
..|++..|.++|+++++++++ .+++++|+|+++++.+++.++++|||.| +++|+|..+...+... |++
T Consensus 47 ~~Y~~~~g~~~Leeaia~~~g----------~~~vv~t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~-Ga~ 114 (431)
T cd00617 47 EAYAGSKSFYDLEDAVQDLFG----------FKHIIPTHQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEAN-GAV 114 (431)
T ss_pred CccCCCCCHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhC-CCE
Confidence 359999999999999999986 3589999999999999999999999987 6899999998888875 999
Q ss_pred EEEeecCCCCC------cc--cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 LVPVVCDSSND------FK--VTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 ~~~v~~~~~~~------~~--~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
++.++++++.+ |. +|++.|+++|.+.. ..++++|++++||||+ |.+++.+++++|.++|++||++||+|
T Consensus 115 pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~--~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~D 192 (431)
T cd00617 115 PVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVG--AENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLD 192 (431)
T ss_pred eEEEecccccccccccCCCCCcCHHHHHHHhCccc--CCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 99999875432 44 99999999997410 1247899999999998 99999999999999999999999999
Q ss_pred ccccc--CccC----CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCce------EEEEEecChHHHHHHHHhh-
Q 011570 239 EIYAA--TVFT----KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR------VGIIYSYNDQVVSCARKMS- 305 (483)
Q Consensus 239 eay~~--~~~~----~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR------iG~li~~~~~l~~~~~~~~- 305 (483)
++... ..|. +.....++.++ ++.+.|+||.+.+.|+| .||++++++++.+.++...
T Consensus 193 aAr~~~na~~i~~r~~g~~~~si~ei-----------~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~ 261 (431)
T cd00617 193 AARFAENAYFIKEREEGYRDKSIAEI-----------AREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVV 261 (431)
T ss_pred chhhHhhhhhhhcccccccCCCHHHH-----------HHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhcc
Confidence 99532 1221 00122344433 23356778887777777 5699997666776665322
Q ss_pred ---h---cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---c
Q 011570 306 ---S---FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK---E 376 (483)
Q Consensus 306 ---~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~---~ 376 (483)
. ++..+.-...+++..|.+... .++++ +++ ++++++.+.|.+.|+++..|.||+++|++++.... .
T Consensus 262 ~~~~~~~~gG~~~r~~~A~A~gL~e~~~-~~~l~---~~~-~~r~~l~~~L~~~G~~v~~P~Ggh~v~~d~~~~~~~~~~ 336 (431)
T cd00617 262 LYEGFVTYGGMAGRDMEALAQGLREAVE-EDYLR---HRV-EQVRYLGDRLDEAGVPIVEPAGGHAVFIDAREFLPHIPQ 336 (431)
T ss_pred ccCCccccccccHHHHHHHHHHHHhccc-HHHHH---HHH-HHHHHHHHHHHHCCCCccCCCcceEEEEEhHHhcCCCCc
Confidence 1 122232222333334433110 12222 223 35588999999999999999999999999986432 1
Q ss_pred cChHHHHHHHHHHHHhcCeEee-CCCCC-C--CC-------CCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhh
Q 011570 377 QTYEAEMALWRVIINEVKLNVS-PGSSF-H--CP-------NPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~-pg~~f-~--~~-------~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..+ ...+|+.+|+++.||.+. -|+.. + +. .-..+||++.. .+.++++.+.++|..++++...
T Consensus 337 ~~~-~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~ 411 (431)
T cd00617 337 EQF-PAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED 411 (431)
T ss_pred ccC-cHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh
Confidence 111 345889999999999854 35521 1 11 12469999965 3999999999999998877543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=254.73 Aligned_cols=307 Identities=16% Similarity=0.132 Sum_probs=216.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
...|.+++++++++++.+.+| .+++|++|+| ++++..++.++++|||.|++++|+|+.+...+... |.+++.+
T Consensus 81 ~~~G~~~l~~~l~~~la~~~g-----~~~~i~~tsG-~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~-~~~~~~~ 153 (397)
T PRK06939 81 FICGTQDLHKELEEKLAKFLG-----TEDAILYSSC-FDANGGLFETLLGKEDAIISDALNHASIIDGVRLC-KAKRYRY 153 (397)
T ss_pred cccCCcHHHHHHHHHHHHHhC-----CCcEEEEcCh-HHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhc-CCceEEe
Confidence 346888999999999998776 2478888888 67888889999999999999999999998888775 8888877
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++.+++....+.++++|+..+.+||||.+.+ +++|+++|+++|++||+||+|....+.. ..
T Consensus 154 ~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~-~~ 222 (397)
T PRK06939 154 AN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP---LPEICDLADKYDALVMVDDSHAVGFVGE-NG 222 (397)
T ss_pred CC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC---HHHHHHHHHHhCCEEEEECcccccCcCC-CC
Confidence 63 4788898888754333346777776677899998766 8889999999999999999996322222 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc--CC-CChHHHHHHHHhcCChhH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF--GL-VSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~--~~-~s~~~q~~~~~~l~~~~~ 327 (483)
.+...... + ..+.+++++||||+++ |+|+||++++ +.+.+.+.... .+ .. .++..+.++.+.++.
T Consensus 223 -~~~~~~~~-~---~~~~~i~~~S~sK~~~--g~r~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~--- 291 (397)
T PRK06939 223 -RGTVEHFG-V---MDRVDIITGTLGKALG--GASGGYTAGR-KEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLEL--- 291 (397)
T ss_pred -CCHHHHcC-C---CCCCcEEEEECHHHhC--ccCceEEEeC-HHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH---
Confidence 11111111 0 2245788999999984 5699999995 55555554432 22 11 223333333333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-- 405 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-- 405 (483)
+. ...+.+++++++++++.+.|++.|+++.++.++++ ++.++... ...++++.|+++ ||.+.++. |..
T Consensus 292 ~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~L~~~-gI~v~~~~-~~~~~ 361 (397)
T PRK06939 292 LE-ESDELRDRLWENARYFREGMTAAGFTLGPGEHPII-PVMLGDAK------LAQEFADRLLEE-GVYVIGFS-FPVVP 361 (397)
T ss_pred Hh-cCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCEE-EEEECCHH------HHHHHHHHHHHC-CceEeeeC-CCCCC
Confidence 11 12456678889999999999988887776666654 44454321 234788888876 99998654 432
Q ss_pred CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 406 PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 406 ~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+.+++|++++. .+++++++++++|++++++.
T Consensus 362 ~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 362 KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 234689999976 69999999999999988654
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=251.18 Aligned_cols=300 Identities=16% Similarity=0.202 Sum_probs=210.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
+.++++.+|++++ .+.+++++|+++++..++.+++++||.|+++.+.|......++.. |++++.++.++
T Consensus 53 ~~~~~e~lA~~~g----------~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~-g~~~~~~~~~~ 121 (370)
T TIGR02539 53 IHDFLEDLAEFLG----------MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERA-GLNVKEVPHTG 121 (370)
T ss_pred HHHHHHHHHHHhC----------CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHc-CCEEEEEecCC
Confidence 4678888999876 246777999999999999999999999999988866666666665 99999999876
Q ss_pred CCCcccCHHHHHHHHHHHHhc-CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 176 SNDFKVTMEALEAAYEKAQES-NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+.+|.+|++.|++++.+...+ ..++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|...... .+
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~~-----~~ 193 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRMP-----VS 193 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCcC-----CC
Confidence 557889999999998653221 136789999999999999888 777888899999999999999853111 12
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChH----------HHHHHHHhcCC
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQ----------TQHLIATMLSD 324 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~----------~q~~~~~~l~~ 324 (483)
.... +..++++|+||+++ +|.|+||++++ +.+++.+.....++..+.+ ++.++...+..
T Consensus 194 ~~~~---------~~di~v~s~sK~~~-~~g~~G~l~~~-~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 262 (370)
T TIGR02539 194 AKEI---------GADFIVGSGHKSMA-ASGPCGVLGMS-EEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH 262 (370)
T ss_pred HHHc---------CCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH
Confidence 2211 33466799999998 67789999995 5555555444332222211 33333343432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee--cCCceEEEeeecCchhh--ccChHHHHHHHHHHHHhcCeE-eeC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL--KSNAGLFLWMDLHHLLK--EQTYEAEMALWRVIINEVKLN-VSP 399 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~--~~~~g~f~~~~l~~~~~--~~~~~~~~~~~~~Ll~~~gV~-v~p 399 (483)
..++++...+.++.. +++.+.|.++|+++. .+..++|++++++.... .........+.+.|. ++||. +++
T Consensus 263 ---~~~~l~~~~~~~~~~-~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~-e~GI~~ir~ 337 (370)
T TIGR02539 263 ---VVERVKRWDEEVKKT-RWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK-KRGIHGIRS 337 (370)
T ss_pred ---HHHHHHHHHHHHHHH-HHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH-hCCCccccC
Confidence 133344444444444 589999999998763 24556789898863210 000011224566665 55996 654
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
| .++++|+++...+++++++++++|++++++
T Consensus 338 ~------~~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 338 G------QTKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred C------cceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 3 246899998335999999999999988764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=251.36 Aligned_cols=297 Identities=15% Similarity=0.166 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS 176 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~ 176 (483)
.+|++++|++++ .+++++++|+++++..++.+++++||.|+++.|+|+.+...++.. +.+.+.++
T Consensus 86 ~~le~~ia~~~g----------~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~-~~~~~~~~---- 150 (393)
T TIGR01822 86 KELEAKIAAFLG----------TEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYA---- 150 (393)
T ss_pred HHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhc-CCceEEeC----
Confidence 788999999876 256788889999999999999999999999999999998887765 76665443
Q ss_pred CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 177 NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 177 ~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
.+|++++++++++....+.++++|++.+++||||.+.+ +++|+++|++||+++|+||+|....+.. ...+..
T Consensus 151 ---~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~--~~~~~~ 222 (393)
T TIGR01822 151 ---NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLGP--TGRGSH 222 (393)
T ss_pred ---CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCC--CCCchH
Confidence 26899999999764333336788888889999999988 8888999999999999999996433322 112222
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc--C-CCChHHHHHHHHhcCChhHHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF--G-LVSSQTQHLIATMLSDDQFVEKFI 332 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~--~-~~s~~~q~~~~~~l~~~~~~~~~~ 332 (483)
.... + ..+.+++++|+||.+ +|+|+||+++ ++.+.+.+... ..+ . ..++..+.++.+++. .++ ..
T Consensus 223 ~~~~-~---~~~~di~~~s~sK~l--~g~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~---~~~-~~ 291 (393)
T TIGR01822 223 ELCG-V---MGRVDIITGTLGKAL--GGASGGFTTA-RKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLE---MLE-AS 291 (393)
T ss_pred HhcC-C---CCCCeEEEEEChHHh--hCCCcEEEEe-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH---HHh-cC
Confidence 2211 0 124568899999987 4789999998 45566655442 222 1 123333333334432 111 23
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--CCCCE
Q 011570 333 AESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGW 410 (483)
Q Consensus 333 ~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~--~~~~~ 410 (483)
++.+++++++++++.+.|++.|+++.++.+. ++.+.++... ...+++..|+++ ||.+. +..|.. .+..+
T Consensus 292 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~i~~~~~~------~~~~l~~~L~~~-gI~v~-~~~~~~~~~~~~~ 362 (393)
T TIGR01822 292 NELRDRLWANTRYFRERMEAAGFDIKPADHP-IIPVMLYDAV------LAQRFARRLLEE-GIYVT-GFFYPVVPKGQAR 362 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCHH------HHHHHHHHHHHC-CeeEe-eeCCCCCCCCCce
Confidence 5567788899999999998888877655554 5555554321 234788888765 99987 554532 13347
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+|++++. .+++++++++++|++++++
T Consensus 363 iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 363 IRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 9999976 4899999999999988664
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=249.42 Aligned_cols=292 Identities=14% Similarity=0.116 Sum_probs=208.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+++++++++++ .+++|++++|+.+.+ .++.+++++||+|+++.|+|+.+...++.. |.+++.++.
T Consensus 63 ~~~l~~~la~~~~---------~~~~i~~~~G~~~~~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-- 129 (360)
T TIGR00858 63 HEELEEELAEWKG---------TEAALLFSSGYLANV-GVISALVGKGDLILSDALNHASLIDGCRLS-GARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECchHHHHH-HHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEecC--
Confidence 4567788888765 357888888865555 567788999999999999999998888875 999887763
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
+|++.+++.+++.. +.++++|++++++||||...+ +++|.++|+++|++||+||+|..+.+.. .. .+.
T Consensus 130 -----~d~~~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~-~~-~~~ 197 (360)
T TIGR00858 130 -----NDVEHLERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGE-DG-RGT 197 (360)
T ss_pred -----CCHHHHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcCC-CC-Cch
Confidence 57889998886421 124678888899999999888 7888888999999999999998654543 21 222
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc---CCCChHHHHHHHHhcCChhHHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF---GLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
..... + ...+++|+++||||+||++| ||+++ ++.+.+.+... ..+ ...++..+.++.++++.. . .
T Consensus 198 ~~~~~-~--~~~~~~i~i~s~sK~~~~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~-~ 266 (360)
T TIGR00858 198 LEHFG-L--KPEPVDIQVGTLSKALGSYG---AYVAG-SQALIDYLINRARTLIFSTALPPAVAAAALAALELI---Q-E 266 (360)
T ss_pred HHhcC-C--CccCCcEEEEechhhhhccC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHH---h-h
Confidence 22211 0 02367899999999999777 99998 45555554332 222 123344444444555321 1 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-CCCCE
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-PNPGW 410 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-~~~~~ 410 (483)
.+..+++++++++++.+.|+++++++.++ +++|+|+.++... ...++.+.|+ ++||.+.++..+.. .+.++
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~l~-~~gI~v~~~~~~~~~~~~~~ 338 (360)
T TIGR00858 267 EPWRREKLLALIARLRAGLEALGFTLMPS-CTPIVPVIIGDNA------SALALAEELQ-QQGIFVGAIRPPTVPAGTSR 338 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccCCC-CCCEEEEEeCCHH------HHHHHHHHHH-HCCeeEeeeCCCCCCCCCce
Confidence 34567788999999999999888877654 4568999886421 2336777776 46999998766543 23468
Q ss_pred EEEEecc-CCHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~ 431 (483)
+||+++. .+++++++++++|+
T Consensus 339 iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 339 LRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred EEEEEcCCCCHHHHHHHHHhhC
Confidence 9999975 59999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=252.51 Aligned_cols=309 Identities=18% Similarity=0.180 Sum_probs=218.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
..|+...++.+|++++|++++ .++.|++++|.... ..++.+++++||.|++++|+|..+...++.. |++
T Consensus 140 ~~~g~~~~~~ele~~lA~~~g---------~~~ai~~~~G~~an-~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~-Ga~ 208 (489)
T PLN02483 140 VDGGTTKLHRELEELVARFVG---------KPAAIVFGMGYATN-STIIPALIGKGGLIISDSLNHNSIVNGARGS-GAT 208 (489)
T ss_pred cccCCcHHHHHHHHHHHHHhC---------CCcEEEECCHHHHH-HHHHHHhCCCCCEEEEcchhhHHHHHHHHHc-CCe
Confidence 457777789999999999997 46788888875554 4677889999999999999999999988876 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhc------CCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQES------NIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~------~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
++.++.+ |++++++.+++.... .+..++++++++ .|++|.+.+ +++|+++|+++|++||+||+
T Consensus 209 v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa 278 (489)
T PLN02483 209 IRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEA 278 (489)
T ss_pred EEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECc
Confidence 9998853 467777776643211 112356666666 699999988 88889999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---cC-CCCh-HHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FG-LVSS-QTQ 315 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~---~~-~~s~-~~q 315 (483)
|+...++. . ......+..-. ..+.+|+++||||+||++| ||+++ ++.+.+.+..... +. ..++ ..|
T Consensus 279 ~s~g~~G~-~-G~g~~~~~~v~---~~~~dI~~~SfSKs~g~~G---G~i~~-~~~li~~l~~~~~~~~~~~~~~p~~~~ 349 (489)
T PLN02483 279 HSIGAVGK-T-GRGVCELLGVD---PADVDIMMGTFTKSFGSCG---GYIAG-SKELIQYLKRTCPAHLYATSMSPPAVQ 349 (489)
T ss_pred CccCccCC-C-CCchHHhcCCC---cccCcEEEEecchhcccCc---eEEEc-CHHHHHHHHHhCccccccCCcCHHHHH
Confidence 97443332 1 12222222100 1356789999999999887 99998 5666666655422 22 2233 333
Q ss_pred HHHHHhc---C-ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 316 HLIATML---S-DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 316 ~~~~~~l---~-~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
.+ .+.+ . .+. .++..+++++++++++++.+.|.++|+.+..+.+++.+|+.+....+ ..++++.|++
T Consensus 350 ~~-~aaL~~l~~~~g--~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~~~~sp~~~l~l~~~~~------~~~~~~~Ll~ 420 (489)
T PLN02483 350 QV-ISAIKVILGEDG--TNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAK------IPAFSRECLK 420 (489)
T ss_pred HH-HHHHHHHHhCcc--ccchHHHHHHHHHHHHHHHHHHHHCCCcccCCCCCCEEEEEECCHHH------HHHHHHHHHH
Confidence 33 3323 1 211 12234556789999999999999999887766666677776643211 2367888885
Q ss_pred hcCeEeeCCCCCC--CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 392 EVKLNVSPGSSFH--CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 392 ~~gV~v~pg~~f~--~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+||.+.+ ..|. +...+++||+++. .++|++++++++|+++++..
T Consensus 421 -~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 421 -QNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred -CCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5999997 4452 2234689999976 69999999999999987654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=247.02 Aligned_cols=340 Identities=14% Similarity=0.148 Sum_probs=233.8
Q ss_pred CCCcccccchhh-hh-cHHHHHHHHhcCCCCcccccccccccc-ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc
Q 011570 45 PNGVIQMGLAEN-LL-CHELVEDWLMNNPKASICSAEGLNEFK-GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR 121 (483)
Q Consensus 45 ~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~ 121 (483)
.+++|||+.+.. .+ +++.+.+++.+.. .... ....|....|..++++++++++.+..| .++.
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~----------~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g-----~~~~ 96 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAI----------QQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK-----TEAA 96 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHH----------HHcCCCCCccCcccCCcHHHHHHHHHHHHHhC-----CCcE
Confidence 356789988752 33 3444444443310 0011 123577778999999999999998766 3467
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|++++|+ +++..++.+++++||.|+++.|+|+.+...+... |.+++.++ .+|++++++.+.+.. .++++
T Consensus 97 i~~~sG~-~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~-g~~~~~~~-------~~d~~~l~~~l~~~~--~~~~~ 165 (385)
T TIGR01825 97 LVFQSGF-NTNQGVLSALLRKGDIVLSDELNHASIIDGLRLT-KATKKIYK-------HADMDDLDRVLRENP--SYGKK 165 (385)
T ss_pred EEECcHH-HHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhc-CCceEEeC-------CCCHHHHHHHHHhhc--cCCCe
Confidence 8888885 5566788888999999999999999888777764 88876654 368888988886532 13578
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
+|++++++||||.+.+ +++|.++|++||+++|+||+|..+.+.. ........+.- ..++++++.||||.+|
T Consensus 166 ~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~ 236 (385)
T TIGR01825 166 LIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGE-AGRGTVHHFGL-----EDKVDIQVGTLSKAIG 236 (385)
T ss_pred EEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCC-CCCccHhhcCC-----CcCCcEEEEeccHHhh
Confidence 8888888999999998 7888999999999999999997665542 11111111111 2467899999999998
Q ss_pred CCCceEEEEEecChHHHHHHHHhh-hc--C-CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMS-SF--G-LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
++| ||+++ ++.+.+.+.... .+ + ..+++.+.++.+.+... .+. .+..+++.++++++.+.|.+.|+++
T Consensus 237 ~~g---G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~---~~~-~~~~~~~~~~~~~l~~~L~~~g~~~ 308 (385)
T TIGR01825 237 VVG---GYAAG-HKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDEL---QRS-PELMERLWDNTRFFKAGLGKLGYDT 308 (385)
T ss_pred cCC---CEEec-CHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHH---hcC-HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 776 99988 455555554432 22 2 23445566665555321 111 2344556778899999998889888
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--CCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~--~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
..+.++ ++++.++.. ....+++..|+++ ||.+. +..|+. .+.+++|++++. .+++++++++++|++++
T Consensus 309 ~~~~~~-~~~~~~~~~------~~~~~~~~~L~~~-gi~v~-~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~ 379 (385)
T TIGR01825 309 GGSETP-ITPVVIGDE------KAAQEFSRRLFDE-GIFAQ-SIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVG 379 (385)
T ss_pred CCCCCC-EEEEEECCH------HHHHHHHHHHHHC-CcEEc-ccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 877765 555555431 1134688888876 99985 444432 234689999854 69999999999999988
Q ss_pred HH
Q 011570 435 LK 436 (483)
Q Consensus 435 ~~ 436 (483)
++
T Consensus 380 ~~ 381 (385)
T TIGR01825 380 KE 381 (385)
T ss_pred HH
Confidence 54
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=243.86 Aligned_cols=334 Identities=15% Similarity=0.182 Sum_probs=219.4
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
..+++|+.|+++.+.+.+.+++...... .....|++. ..+|++++|++++. +.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~~~~~~--~~~l~~~la~~~~~----------~~~~~~ 61 (353)
T PLN02721 5 SRVVDLRSDTVTKPTDAMRAAMANAEVD-----------DDVLGYDPT--ALRLEEEMAKIFGK----------EAALFV 61 (353)
T ss_pred hhhhhhhcccccCCCHHHHHHHHhccCC-----------CcccCCCHH--HHHHHHHHHHHhCC----------ceeEEe
Confidence 3468999999998877777776542000 112234332 68999999999872 234555
Q ss_pred CChhHHHHHHHHHhcC-CCCeEEEeCCCCcChHH---HHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcC-Cce
Q 011570 126 GGATGAHETVAFCLAD-PGDAFLVPTPYYPGFDR---DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESN-IRI 200 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~-~gd~Vlv~~P~y~~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~-~~~ 200 (483)
+++++++..++.++++ +||.|++++|+|..... .+.. .|++++.++.++ ++.+|++.+++++++....+ +++
T Consensus 62 ~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~ 138 (353)
T PLN02721 62 PSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTL-GGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTT 138 (353)
T ss_pred cCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhh-cCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcc
Confidence 5556566677777777 99999999999865444 3454 499999988754 46789999999997421111 378
Q ss_pred eEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 201 KGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 201 ~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
++|+++++ |||||.+++.+++++|+++|+++|+++|+||+|....+.. .. .+...+.. ..+.+ +.|+||.
T Consensus 139 ~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~-~~-~~~~~~~~-----~~d~~--~~s~sK~ 209 (353)
T PLN02721 139 RLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVA-LG-VPVHRLVK-----AADSV--SVCLSKG 209 (353)
T ss_pred eEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhh-hC-CCHHHHhh-----hCCEE--EEecccc
Confidence 89999875 7899999999999999999999999999999985321110 01 12222222 22433 4479999
Q ss_pred cCCCCceEEE-EEecChHHHHHHHHhhhcC--CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011570 280 MGFPGFRVGI-IYSYNDQVVSCARKMSSFG--LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GI 355 (483)
Q Consensus 280 ~g~~GlRiG~-li~~~~~l~~~~~~~~~~~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi 355 (483)
++. ++|| +++ ++++.+.+....... ..+...+.+++.+.. ++.+.++.+ +..++++.+.+.|+++ ++
T Consensus 210 l~~---~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~~~~~~l~~~L~~~~~~ 280 (353)
T PLN02721 210 LGA---PVGSVIVG-SKSFIRKAKRLRKTLGGGMRQVGVLAAAALVA----LQENVPKLE-DDHKKAKLLAEGLNQIKGL 280 (353)
T ss_pred cCC---ceeeEEec-CHHHHHhHHHHHHhcCCCeehhHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHhCCCc
Confidence 863 3676 455 566665554443321 122222222222211 122233332 3355678899999887 67
Q ss_pred ee--ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 356 GC--LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 356 ~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
.+ .++.+ +|+|++++.... .....+++.|. ++||.++|+. ++++|++++. .+++++++++++|++
T Consensus 281 ~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~L~-~~gi~v~~~~------~~~lR~~~~~~~~~~~i~~~~~~l~~ 348 (353)
T PLN02721 281 RVNVAAVET-NIVYFDITDGSR----ITAEKLCKSLE-EHGVLLMPGN------SSRIRVVTHHQISDSDVQYTLSCFQQ 348 (353)
T ss_pred EEecCCccc-eEEEEEccCCcc----ccHHHHHHHHH-hCCcEEecCC------CceEEEEecCcCCHHHHHHHHHHHHH
Confidence 54 34444 579999875210 01336777777 6799999873 4589999974 699999999999998
Q ss_pred HHH
Q 011570 433 FML 435 (483)
Q Consensus 433 ~l~ 435 (483)
++.
T Consensus 349 ~~~ 351 (353)
T PLN02721 349 AAL 351 (353)
T ss_pred Hhh
Confidence 765
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=230.66 Aligned_cols=328 Identities=18% Similarity=0.265 Sum_probs=218.7
Q ss_pred cccccC-CCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChh-HHHHHHHH-Hh----cC--------CCCeEEEe
Q 011570 85 KGIAIF-QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT-GAHETVAF-CL----AD--------PGDAFLVP 149 (483)
Q Consensus 85 ~~~~~Y-~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~-~al~~~~~-~l----~~--------~gd~Vlv~ 149 (483)
.+..+| +...|++++|+.+|+.++ +++++|++...++ +.|+-++. ++ .+ +.-+.|||
T Consensus 59 ~D~RNY~G~l~Gipe~r~l~a~llg--------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 59 TDCRNYPGGLDGIPEARELFAELLG--------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp EBTTSS-S-SS--HHHHHHHHHHHT--------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred ccccCCCCccCChHHHHHHHHHHhC--------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 356789 889999999999999998 7899998876555 55554442 22 11 12378999
Q ss_pred CCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCcCCCCHHHHHHHHHH
Q 011570 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP--SNPLGTFLDRETLKDIVSF 227 (483)
Q Consensus 150 ~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P--~NPtG~~~~~~~l~~i~~~ 227 (483)
.|+|..+..+++.. |++.++||+.++| +|++.+++.+.+ ++.+|.|+ |.| +||||.++|.|..++++++
T Consensus 131 vPGYDRHFai~E~~-Giemi~VpM~~dG---PDmD~Ve~LV~~----D~svKGiW-cVP~ySNPtG~tySde~vrrlA~m 201 (425)
T PF12897_consen 131 VPGYDRHFAITEHF-GIEMIPVPMTEDG---PDMDMVEELVAE----DPSVKGIW-CVPKYSNPTGITYSDEVVRRLAAM 201 (425)
T ss_dssp ES--HHHHHHHHHC-T-EEEEEEEETTE---E-HHHHHHHTHT----STTEEEEE-E-SSS-TTT-----HHHHHHHHHS
T ss_pred CCCchHHHHHHHhh-CcEEEecCCCCCC---CCHHHHHHHHhc----CCccceEE-eCCCccCCCCccCCHHHHHHHhcC
Confidence 99999999999886 9999999999877 999999998864 46888875 445 8999999999999999997
Q ss_pred -HhhcCcEEEEccccccCccCCCCCc---chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH
Q 011570 228 -INEKNIHLVCDEIYAATVFTKESSF---VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 228 -a~~~~~~iI~Deay~~~~~~~~~~~---~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~ 303 (483)
....+..|+-|++|.-..+..+.+. ..+.....+. +++++++++.|+||.. +||-.++++.++.+.+....+.
T Consensus 202 ~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~A--Gnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~ 278 (425)
T PF12897_consen 202 KTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKA--GNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKH 278 (425)
T ss_dssp --SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHT--T-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHH
T ss_pred CcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHc--CCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHH
Confidence 3457999999999987766321221 2455544432 3678999999999986 6999999999976666665544
Q ss_pred hhhc-CCCChHHHHHHHHhcCChh-HHHHHHHHHHHHHHHHHHHHHHhhhcC-----C-ceeecCCceEEEeeecCchhh
Q 011570 304 MSSF-GLVSSQTQHLIATMLSDDQ-FVEKFIAESAKRIAERHKAFTWGLSQV-----G-IGCLKSNAGLFLWMDLHHLLK 375 (483)
Q Consensus 304 ~~~~-~~~s~~~q~~~~~~l~~~~-~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g-i~~~~~~~g~f~~~~l~~~~~ 375 (483)
+... .+..-+.|..-..++.+.+ -++.|.+++++.++-+.+.+.+.|++. | .+|..|.||||++++...+-.
T Consensus 279 ~~~~tIgpdKvNQLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G~A 358 (425)
T PF12897_consen 279 LSVQTIGPDKVNQLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDGTA 358 (425)
T ss_dssp HHHH-S---HHHHHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-H
T ss_pred hcCceeCccHHHHHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCChH
Confidence 4332 3356788999999999876 678899999999998888887777653 3 489999999999999986421
Q ss_pred ccChHHHHHHHHHHHHhcCeEeeC-CCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 376 EQTYEAEMALWRVIINEVKLNVSP-GSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~~~gV~v~p-g~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.-.-.|.++.||.+.| |..|... .+..|||+.++.+.|+++.+++.+.-+++-..-|
T Consensus 359 --------krvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~la~~e 419 (425)
T PF12897_consen 359 --------KRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKLAAVE 419 (425)
T ss_dssp --------HHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567789999988 7777543 2457999999889999999999998776554433
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=249.19 Aligned_cols=315 Identities=17% Similarity=0.195 Sum_probs=227.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
.|++..++.+|+++||++++ .++.|++++|.+ ++..++.+++++||.|++...+|..+...+... |.++
T Consensus 149 ~yg~~~~~~~Lee~La~~~~---------~~~~i~~s~G~~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls-~~~~ 217 (481)
T PLN02822 149 FYGTIDVHLDCETKIAKFLG---------TPDSILYSYGLS-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLS-RSTI 217 (481)
T ss_pred cccCHHHHHHHHHHHHHHhC---------CCCEEEECCHHH-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHc-CCeE
Confidence 46667778999999999987 467899999888 578888999999999999988887777777765 8899
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhc---CCce-eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQES---NIRI-KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~---~~~~-~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
+.++.+ |.+.++..+++...+ .+++ ++|++..++|+||.+.+ +++|+++|++||+++|+||+|+..
T Consensus 218 ~~~~~n-------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~i~~l~~k~~~~LIvDEa~s~g 287 (481)
T PLN02822 218 VYFKHN-------DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDEIVRLKEKYRFRVLLDESNSFG 287 (481)
T ss_pred EEECCC-------CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 888765 345555555443222 1234 68888888999999999 888999999999999999999866
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---cC-CCChHHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FG-LVSSQTQHLIAT 320 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~---~~-~~s~~~q~~~~~ 320 (483)
+++. .. ..+..... . ...+..++++||||++|++| ||+++ ++.+.+.++.... ++ ..+++.+.++.+
T Consensus 288 vlG~-~G-~G~~e~~~-v--~~~~~dii~~s~sKalg~~G---G~i~g-~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~ 358 (481)
T PLN02822 288 VLGK-SG-RGLSEHFG-V--PIEKIDIITAAMGHALATEG---GFCTG-SARVVDHQRLSSSGYVFSASLPPYLASAAIT 358 (481)
T ss_pred ccCC-CC-CChHHHcC-C--CCCCCeEEEecchhhhhhCC---eEEEc-CHHHHHHHHhcCCceeeccccCHHHHHHHHH
Confidence 6653 21 22222211 0 01245688999999999999 99998 5556666553322 22 123555666655
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhc--cChHHHHHHHHHHHHhcCeEe
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKE--QTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~~~gV~v 397 (483)
+|+. ++. ..+.+++++++++++.+.|.+. |+++..+.+++++++.++..... .+.....+++++|++++||.+
T Consensus 359 aL~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v 434 (481)
T PLN02822 359 AIDV---LED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLV 434 (481)
T ss_pred HHHH---HHh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEE
Confidence 6532 222 2456788999999999999987 88887778889999999642110 111123478999997789999
Q ss_pred eCCC--CCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 398 SPGS--SFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 398 ~pg~--~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|+. .|+.. .+.++|++++. .+++++++++++|++++.+.
T Consensus 435 ~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~ 478 (481)
T PLN02822 435 VVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASV 478 (481)
T ss_pred EeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9773 33211 24579999865 69999999999999988764
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=245.80 Aligned_cols=295 Identities=16% Similarity=0.214 Sum_probs=212.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCc-CCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcC----hHHHHhhhcCc
Q 011570 96 LPEFRNAVAKFMGKVRGNRITF-DPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPG----FDRDLRWRTGV 166 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~~G~ 166 (483)
..++|+.+|++++ + ++++|++|+|++++++.++.++ +++||+|++++|.|++ +...++.. |+
T Consensus 65 ~~~~r~~la~~~g--------~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~ 135 (401)
T PRK10874 65 YEAAREQVAQLLN--------APDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQT-GA 135 (401)
T ss_pred HHHHHHHHHHHcC--------CCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHh-CC
Confidence 5688888998876 4 6889999999999999999998 4799999999999865 33444554 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++.+. ++.+|++.+++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 136 ~v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~ 204 (401)
T PRK10874 136 KVVKLPLGA--DRLPDVDLLPELITP------RTRILALGQMSNVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHF 204 (401)
T ss_pred EEEEEecCC--CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEECCcccccc
Confidence 999999864 467899999998854 7899999999999999998 77888889999999999999963212
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---------------------
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--------------------- 305 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--------------------- 305 (483)
. .++..+ +..+++.|++|.+|.+| +||+++++ .+.+.+....
T Consensus 205 ~-----~~~~~~---------~~d~~~~s~~K~~gp~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (401)
T PRK10874 205 P-----ADVQAL---------DIDFYAFSGHKLYGPTG--IGVLYGKS-ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPW 267 (401)
T ss_pred c-----CCchhc---------CCCEEEEecccccCCCc--cEEEEEch-HHHhcCCCeecCCcceEeeccCccCCCCChh
Confidence 1 222211 34567789999998777 59999854 4433322110
Q ss_pred hc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHH
Q 011570 306 SF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 306 ~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
.+ ++.+.+.+.++.+++.... +.-..+.+++.++.++++.+.|+++ |+++..+..+.++++.++.. . .
T Consensus 268 ~~e~Gt~~~~~~~al~~al~~l~--~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~-~------~ 338 (401)
T PRK10874 268 RFEAGTPNVAGVIGLSAALEWLA--DIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGV-H------H 338 (401)
T ss_pred hccCCCcCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCc-C------H
Confidence 01 2234345555554442111 1112335566777788899999887 88877555555777776531 1 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.++...| .++||.+++|..|.. ...+++|+|++. .++++++.+++.|+++++..
T Consensus 339 ~~~~~~L-~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 339 SDLVTLL-AEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred HHHHHHH-HHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 2566555 467999999986642 125789999986 59999999999999987653
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-28 Score=239.58 Aligned_cols=300 Identities=18% Similarity=0.167 Sum_probs=207.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhhhcC
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRWRTG 165 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~~~G 165 (483)
.|++.....++++.++++++ ++++++++|+++++..++.+++++||.|+++.|+|..+.. .... .|
T Consensus 27 ~~~~~~~~~~l~~~~a~~~g----------~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~-~g 95 (338)
T cd06502 27 VYGEDPTTAKLEARAAELFG----------KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFL-SG 95 (338)
T ss_pred ccCCCHHHHHHHHHHHHHhC----------CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHH-cC
Confidence 46555567788888888764 4577788888899999999999999999999999876443 2333 49
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHh-cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQE-SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
++++.++.+. +.+|++++++++.+... ..+++++|+++||||| |.+++.+++++|+++|+++|+++|+||+|...
T Consensus 96 ~~~~~v~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~ 171 (338)
T cd06502 96 VKLLPVPGEN---GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLAN 171 (338)
T ss_pred ceEEeecCCC---CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHH
Confidence 9999998742 57999999999864210 0126789999999997 67779999999999999999999999998643
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c---CCCChHHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F---GLVSSQTQHLIAT 320 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~---~~~s~~~q~~~~~ 320 (483)
.... .. .++..+.. ..+ +++.|+||+||++| |+++..++.+.+.+..... + ..++++.+.++..
T Consensus 172 ~~~~-~~-~~~~~~~~-----~~d--~~~~s~sK~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 239 (338)
T cd06502 172 AAAA-LG-VALKTYKS-----GVD--SVSFCLSKGGGAPV---GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLA 239 (338)
T ss_pred HHHh-cC-CCHHHHHh-----cCC--EEEEeccccCCCcc---ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 2111 11 13333321 123 45779999999887 5544335666666554432 1 2245567777777
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHH--HhcCeEee
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVII--NEVKLNVS 398 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll--~~~gV~v~ 398 (483)
.|....+ .+..+++.++++++.+.|+++|+.+.++.++ |+.++++.. . .....+.+.+. .++||.+.
T Consensus 240 ~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~v~~~~~---~--~~~~~l~~~l~~~~~~gi~~~ 308 (338)
T cd06502 240 ALENDLW-----LRRLRHDHEMARRLAEALEELGGLESEVQTN-IVLLDPVEA---N--AVFVELSKEAIERRGEGVLFY 308 (338)
T ss_pred HhcCchH-----HHHHHHHHHHHHHHHHHHHhcCCCcccccCC-eEEEecCCc---c--HHHHHHHHHHHHhhhCCEEEE
Confidence 7776443 2333556667788999999888876666665 666666531 1 01113333333 14699887
Q ss_pred CCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 399 PGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 399 pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
+.. .+++|++++. .+++++++++++|++
T Consensus 309 ~~~------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 309 AWG------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ecC------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 642 2689999976 499999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=243.46 Aligned_cols=296 Identities=17% Similarity=0.201 Sum_probs=209.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcC----hHHHHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPG----FDRDLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~~G~~ 167 (483)
..++|+.+|++++. -++++|++|+|++++++.++.++ +++||+|++++|.|++ +...++.. |++
T Consensus 62 ~~~~r~~la~~~g~-------~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~-g~~ 133 (398)
T TIGR03392 62 YELARQQVARFLNA-------PDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQT-GAK 133 (398)
T ss_pred HHHHHHHHHHHhCC-------CCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHc-CcE
Confidence 46789999998872 14789999999999999999887 5889999999999876 33444554 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++++. ++.+|++.+++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+
T Consensus 134 v~~v~~~~--~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~- 201 (398)
T TIGR03392 134 VVKLPIGA--DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHG- 201 (398)
T ss_pred EEEEecCC--CCCcCHHHHHHHhcc------CceEEEEECccccccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCC-
Confidence 99999864 357899999998864 7899999999999999998 77788899999999999999964211
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---------------------S 306 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---------------------~ 306 (483)
+ .++..+ +..+++.|++|.+|.+| +||++++ +.+.+.+.... .
T Consensus 202 ---~-~~~~~~---------~~d~~~~s~~K~~gp~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (398)
T TIGR03392 202 ---P-PDVQAL---------DIDFYAFSGHKLYGPTG--IGVLYGK-TELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHR 265 (398)
T ss_pred ---C-CChhhc---------CCCEEEEecccccCCCc--eEEEEEc-HHHHhhCCCeecCCceEeeccccccccCCChhh
Confidence 1 222222 33466788899998666 8999985 44433321110 0
Q ss_pred c--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHH
Q 011570 307 F--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 307 ~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
+ ++.+.+...++.+++.--. +.-.++..++..+.++++.+.|.++ |+++..+..+.++++.++.. . ..
T Consensus 266 ~e~GT~~~~~~~a~~~al~~l~--~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~-~------~~ 336 (398)
T TIGR03392 266 FEAGTPNIAGVIGLSAALEWLT--DIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGV-H------HS 336 (398)
T ss_pred ccCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCc-C------HH
Confidence 1 2223333333333332100 1112344566677778888888877 78776544455777776531 1 22
Q ss_pred HHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++...|. ++||.|++|..|.. ..++++|+|++. .++++++.+++.|++++++.
T Consensus 337 ~l~~~L~-~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 337 DLAALLA-ESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred HHHHHHH-hCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 5666654 67999999986632 125799999976 59999999999999987753
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=242.18 Aligned_cols=347 Identities=16% Similarity=0.129 Sum_probs=228.9
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
.++|..+++.+++. +.+++...... ..+.. ......|+...+.+.+++.+++++.+.+| .+..+|++++
T Consensus 21 ~~~~~~~~~~~~~~-v~~a~~~~~~~----~~~~g-~~~~~~~~~~~~~~~l~~~~~~~~~~~~g----~~~~~v~~~s- 89 (402)
T cd00378 21 TLELIASENFTSPA-VMEAMGSDLTN----KYAEG-YPGKRYYGGCEYVDEIEDLAIERAKKLFG----AEYANVQPHS- 89 (402)
T ss_pred CeeeeccCCcCCHH-HHHHhcccccc----cccCC-CCCCcccCCchHHHHHHHHHHHHHHHHhC----CCceeeecCC-
Confidence 57888887777544 44444332100 00000 01123465666678888877777777666 3445566665
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-----HhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCcee
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-----LRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-----~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
+++++..++.++++|||+|+++.|+|+.+... ++.. |.++..++++.+ .++.+|++.+++++.+ .+++
T Consensus 90 gt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~id~~~l~~~i~~-----~~~~ 163 (402)
T cd00378 90 GSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSAS-GKLFESVPYGVDPETGLIDYDALEKMALE-----FKPK 163 (402)
T ss_pred cHHHHHHHHHHhcCCCCEEEEecCccCcccccccccccccc-ceeEEEecCCcCcccCCcCHHHHHHHHHh-----CCCC
Confidence 57999999999999999999999999876443 4444 887777776543 2678999999999864 2688
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc-ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY-AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay-~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
+|++++|+||+ ..+ +++|+++|+++|++||+|++| .++.+.+ ....++. ...++++|+||++
T Consensus 164 ~v~~~~~~~~~--~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g-~~~~~~~-----------~~dv~~~s~sK~l 226 (402)
T cd00378 164 LIVAGASAYPR--PID---FKRFREIADEVGAYLLVDMAHVAGLVAGG-VFPNPLP-----------GADVVTTTTHKTL 226 (402)
T ss_pred EEEecCcccCC--CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcc-cCCCccc-----------CCcEEEeccccCC
Confidence 99999998874 334 888999999999999999996 4333332 1111111 1126789999977
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhcCC--CCh-HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSFGL--VSS-QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~~~--~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
+|+|.||++++++.+.+.+......+. .+. ..+.+++.++.. .......+.+++++++++++.+.|.+.|+++
T Consensus 227 --~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 302 (402)
T cd00378 227 --RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKE--ALEPEFKAYAKQVVENAKALAEALKERGFKV 302 (402)
T ss_pred --CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 889999999966466666544332211 121 222222222221 1111345666778999999999999999887
Q ss_pred e-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC----CCCCEEEEEeccC-----CHHHHHHHH
Q 011570 358 L-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC----PNPGWFRVCFANM-----DDRTMEIAL 427 (483)
Q Consensus 358 ~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~----~~~~~iRis~~~~-----~~e~l~~~l 427 (483)
. .+.+++++|++++..... . ..+..+++++||.+.++..... ..+.++|+++... ++++++.++
T Consensus 303 ~~~~~~~~~v~v~~~~~~~~-----~-~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~ 376 (402)
T cd00378 303 VSGGTDNHLVLVDLRPKGIT-----G-KAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIA 376 (402)
T ss_pred eecCCCCeEEEEeCCccCCC-----H-HHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHH
Confidence 6 456789999999742111 1 2334456788999986432221 1346899999642 489999999
Q ss_pred HHHHHHHHHhh
Q 011570 428 SRITSFMLKNV 438 (483)
Q Consensus 428 ~~L~~~l~~~~ 438 (483)
+.|++++++..
T Consensus 377 ~~l~~~~~~~~ 387 (402)
T cd00378 377 DFIARALKDAE 387 (402)
T ss_pred HHHHHHHhccc
Confidence 99999886654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=237.44 Aligned_cols=299 Identities=15% Similarity=0.193 Sum_probs=205.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..++++.+|++++ + +++++|+|+++++..++.+++++||+|+++.++|......++.. |++++.++.+.
T Consensus 46 ~~~l~~~la~~~g--------~--~~i~~~~g~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 114 (361)
T cd06452 46 IKDFHHDLAEFLG--------M--DEARVTPGAREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERA-GLNVREVPNTG 114 (361)
T ss_pred HHHHHHHHHHHcC--------C--ceEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhc-CCEEEEEecCC
Confidence 5789999999876 3 78999999999999999999999999999999887776666665 99999999886
Q ss_pred CCCcccCHHHHHHHHHHHHhc-CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 176 SNDFKVTMEALEAAYEKAQES-NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~-~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+++|.+|++.+++++++...+ ++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.. .. .+ .+
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~---g~-~~-~~ 186 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKKIAKVCHEYGVPLLLNGAYTV---GR-MP-VS 186 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHHHHHHHHHcCCeEEEECCccc---CC-cC-CC
Confidence 656889999999998753211 236899999999999999876 78888889999999999999973 22 12 22
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCCh----------HHHHHHHHhcCC
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSS----------QTQHLIATMLSD 324 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~----------~~q~~~~~~l~~ 324 (483)
...+ +..++++|+||.++ ++.|+||++++ +.+.+.+......+.++. ....++.+.+.
T Consensus 187 ~~~~---------~~d~~~~s~~K~l~-~~~~~G~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~- 254 (361)
T cd06452 187 GKEL---------GADFIVGSGHKSMA-ASAPIGVLATT-EEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP- 254 (361)
T ss_pred HHHc---------CCCEEEecCCcccc-CCCCeEEEEEC-HHHHHHHhccccccccceeeeeccccCchHHHHHHHHHH-
Confidence 2222 45688999999998 66699999995 555555544332211111 11222222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec--CCceEEEeeecCchhhcc--ChHHHHHHHHHHHHhcCeEeeC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK--SNAGLFLWMDLHHLLKEQ--TYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~~~g~f~~~~l~~~~~~~--~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
+..++++...+. .++++++.+.|+++ |++++. +....|+.++.+...... ......++.+.|++ +||.+..
T Consensus 255 --~~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~~ 330 (361)
T cd06452 255 --HVKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGIK 330 (361)
T ss_pred --HHHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEEc
Confidence 122233333323 33447888999998 888762 223446667765211100 00011246777765 5998531
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
....+++|++....++++++.++++|+++.
T Consensus 331 -----~~~~~~~ri~~~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 331 -----PGLTRYFKLSTYGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -----CCCceEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 123458999994358999999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=242.26 Aligned_cols=299 Identities=14% Similarity=0.144 Sum_probs=208.7
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
.+.+|++.+|++++ .++.|++++|+ +++..++.++. .+||.|+++.+.|..+...++.. |.++..++
T Consensus 92 ~~~~Le~~la~~~g---------~~~~i~~~sG~-~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~-g~~~~~~~ 160 (410)
T PRK13392 92 PHVLLERELADLHG---------KESALLFTSGY-VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS-GAEKQVFR 160 (410)
T ss_pred HHHHHHHHHHHHhC---------CCCEEEECcHH-HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc-CCeEEEEe
Confidence 36789999999876 35678888875 56666666664 38998888887888777777664 88877665
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+ |.+.+++.++... ..++++|++++|+||||.+++ +++|.++|+++|+++|+||+|....++. ..
T Consensus 161 ~~-------d~~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~-~g- 226 (410)
T PRK13392 161 HN-------DLADLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGA-RG- 226 (410)
T ss_pred CC-------CHHHHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCccccCcCC-CC-
Confidence 32 4556666665321 236889999999999999999 7788888889999999999998544543 21
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc----CCCChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF----GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~----~~~s~~~q~~~~~~l~~~~~~ 328 (483)
..+..... + .....++++||||.||++| ||+++ ++.+.+.++..... ...+++.+.++.++|+....
T Consensus 227 ~g~~~~~~-~---~~~~div~~tlsK~~g~~G---G~~~~-~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~- 297 (410)
T PRK13392 227 GGIAERDG-L---MDRIDMIQGTLAKAFGCLG---GYIAA-SADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKT- 297 (410)
T ss_pred Cchhhhcc-C---CCCCcEEEEEChHhhhccc---chhhc-CHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhc-
Confidence 22222111 0 1122378899999999988 99998 55666655554422 12344667777676653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-C
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-N 407 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~ 407 (483)
....++.+.++++++.+.|++.|+++.++.+++ +.+.++.. ....+++++|++++||.++++.....+ +
T Consensus 298 ---~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~~i~~~~~------~~~~~~~~~L~~~~GI~v~~~~~p~~~~~ 367 (410)
T PRK13392 298 ---SQTERDAHQDRVAALKAKLNANGIPVMPSPSHI-VPVMVGDP------TLCKAISDRLMSEHGIYIQPINYPTVPRG 367 (410)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCE-EEEEeCCH------HHHHHHHHHHHHhCCEEEeeeCCCCCCCC
Confidence 234456778888999999999899887777764 44444321 123478888887789999987544332 3
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++||++.. .++++++.++++|++++++.
T Consensus 368 ~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 368 TERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 4689999954 49999999999999886543
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=237.71 Aligned_cols=338 Identities=14% Similarity=0.150 Sum_probs=218.5
Q ss_pred CCCCcccccchhhh-h-cHHHHHHHHhcCCCCcccccccccccc-ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 44 NPNGVIQMGLAENL-L-CHELVEDWLMNNPKASICSAEGLNEFK-GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 44 ~~~~~i~l~~~~n~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
....+|||+.+++. + +++.+.+++.+.... +. ....|....|..++++.+++.+.+.++ .++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~g~~~~~~~l~~~la~~~~-----~~~ 101 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARR----------YGAGSGGSRLVTGNSPAHEALEEELAEWFG-----AER 101 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHh----------cCCCCCCcCcccCCcHHHHHHHHHHHHHhC-----CCc
Confidence 34678999988752 2 334455544331100 00 011122223434444444444444333 245
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
.|++++ +++++..++..++++||.|+++.|+|+.+...+... |.+++.++. .|++.+++.+++. .+++
T Consensus 102 ~i~~~~-g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~i~~~---~~~~ 169 (385)
T PRK05958 102 ALLFSS-GYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLS-RARVRRYPH-------NDVDALEALLAKW---RAGR 169 (385)
T ss_pred EEEECc-HHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhc-CCceEEeCC-------CCHHHHHHHHHhc---cCCC
Confidence 555555 455666677888999999999999999998887765 999888764 3788898888641 1134
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
.++++.+++||||...+ +++|+++|++||+++|+||+|....+... ..+.....+. ..++++++.|+||.
T Consensus 170 ~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~------~~~~~i~~~s~sK~ 240 (385)
T PRK05958 170 ALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLA------GEPDVILVGTLGKA 240 (385)
T ss_pred eEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCC------CCCceEEEEechhh
Confidence 55566678999999877 88889999999999999999976544421 1111111121 23678999999999
Q ss_pred cCCCCceEEEEEecChHHHHHHHHhh-hc---CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011570 280 MGFPGFRVGIIYSYNDQVVSCARKMS-SF---GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI 355 (483)
Q Consensus 280 ~g~~GlRiG~li~~~~~l~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi 355 (483)
+|++| ||+++ ++.+.+.+.... .+ ...++....++.++++... .. ....+++.++++++.+.|++.|+
T Consensus 241 ~~~~G---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~---~~-~~~~~~~~~~~~~l~~~L~~~~~ 312 (385)
T PRK05958 241 LGSSG---AAVLG-SETLIDYLINRARPFIFTTALPPAQAAAARAALRILR---RE-PERRERLAALIARLRAGLRALGF 312 (385)
T ss_pred cccCC---cEEEc-CHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHh---cC-HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99777 99988 455555543322 22 1233444444444443221 11 34566788888999999998888
Q ss_pred eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 356 GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 356 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
++.++.++ |+|+.++... ...++.+.|.+ +||.+.++..+... +++++||+++. .+++++++++++|+++
T Consensus 313 ~~~~~~~~-~~~~~~~~~~------~~~~~~~~l~~-~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 313 QLMDSQSA-IQPLIVGDNE------RALALAAALQE-QGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred CcCCCCCC-EEEEEeCCHH------HHHHHHHHHHH-CCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 87776654 7788876421 23367788764 59999986544322 34689999974 5999999999999875
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=231.40 Aligned_cols=295 Identities=16% Similarity=0.173 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..++++.++++++ . ++. ++++++++++..++.+++++||.|+++.|+|+.+...+... |++++.++.
T Consensus 48 ~~~l~~~la~~~~--------~-~~~-iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~~~~-- 114 (349)
T cd06454 48 HEELEEELAEFHG--------K-EAA-LVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLS-GAKKRIFKH-- 114 (349)
T ss_pred HHHHHHHHHHHhC--------C-CCE-EEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHc-CCceEEecC--
Confidence 4566666666654 1 234 55555567888888888999999999999999988877775 999887752
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
+|++.+++.+++.. ...++++|++++|+||||...+ +++|+++|+++|+++|+||+|+...+.. .. ...
T Consensus 115 -----~~~~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~-~~-~~~ 183 (349)
T cd06454 115 -----NDMEDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGP-HG-RGV 183 (349)
T ss_pred -----CCHHHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHcCCEEEEEccccccccCC-CC-CCh
Confidence 47788888887532 1135678888899999999987 7888899999999999999997433322 11 111
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc---CCCChHHHHHHHHhcCChhHHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF---GLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
..... ...+.+++++|+||.+|.+| ||++++ +.+.+.+... ..+ +..+++.+.++.+.+... .+
T Consensus 184 ~~~~~----~~~~~~i~~~s~sK~~~~~g---G~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~- 251 (349)
T cd06454 184 EEFGG----LTDDVDIIMGTLGKAFGAVG---GYIAGS-KELIDYLRSYARGFIFSTSLPPAVAAAALAALEVL---QG- 251 (349)
T ss_pred hhhcc----ccccCcEEEeechhhhcccC---CEEECC-HHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHH---hc-
Confidence 11110 02356788999999998655 999984 4554444332 222 234555555555554321 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-CCCCE
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-PNPGW 410 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-~~~~~ 410 (483)
....+++++++++.+.+.|.+.|+++..+.++++.++.++.. ....++.+.|+++ ||.+.++..... ...++
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~L~~~-gI~~~~~~~~~~~~~~~~ 324 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKELGFPVGGSPSHIIPPLIGDDP------AKAVAFSDALLER-GIYVQAIRYPTVPRGTAR 324 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCcEEEEeCCCh------HHHHHHHHHHHhC-CceEEEecCCccCCCCCe
Confidence 345567888888999999988888877665665555544421 1234778888766 999988642211 12468
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
+|++++. .+++++++++++|+++
T Consensus 325 iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 325 LRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHh
Confidence 9999976 5999999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=229.14 Aligned_cols=294 Identities=18% Similarity=0.172 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
.++++.++++++ +++ +.+++|+|+++++..++.+++.+||.|+++.++|.. +...++.. |.+++.++.
T Consensus 35 ~~~~~~la~~~g--------~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 105 (356)
T cd06451 35 DEILEGLRYVFQ--------TENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDRWADMAERY-GADVDVVEK 105 (356)
T ss_pred HHHHHHHHHHhc--------CCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCchhHHHHHHHHHh-CCCeEEeec
Confidence 456666666665 334 457888889999999999999999999999988765 44555665 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
++ ++.+|++.+++.+++ .++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|. ++. .+ .
T Consensus 106 ~~--~~~~~~~~l~~~i~~-----~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~~~~li~D~~~~---~g~-~~-~ 170 (356)
T cd06451 106 PW--GEAVSPEEIAEALEQ-----HDIKAVTLTHNETSTGVLNP---LEGIGALAKKHDALLIVDAVSS---LGG-EP-F 170 (356)
T ss_pred CC--CCCCCHHHHHHHHhc-----cCCCEEEEeccCCCcccccC---HHHHHHHHHhcCCEEEEeeehh---ccC-cc-c
Confidence 65 357899999999864 26889999999999999999 6678888889999999999986 332 11 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH----hh----------------hc-CCCCh
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK----MS----------------SF-GLVSS 312 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~----~~----------------~~-~~~s~ 312 (483)
++... +..+++.|++|.++.| .++||++.++ .+.+.+.. .. .. +..+.
T Consensus 171 ~~~~~---------~~d~~~~s~~K~l~~p-~g~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 239 (356)
T cd06451 171 RMDEW---------GVDVAYTGSQKALGAP-PGLGPIAFSE-RALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPV 239 (356)
T ss_pred ccccc---------CccEEEecCchhccCC-CCcceeEECH-HHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChH
Confidence 22111 2235577899999843 4689999954 44444332 00 01 11223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 313 QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
..+.++.+++.. ......+...++.+++++++.+.|.+.|+++..+. ++.++|+.++...+ ..++++.|
T Consensus 240 ~~~~a~~aal~~--l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L 311 (356)
T cd06451 240 NLLYALREALDL--ILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGVD------GDEVVRRL 311 (356)
T ss_pred HHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCCC------HHHHHHHH
Confidence 333444444322 11222455667778888999999988888776422 34566777764322 23677777
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
.+++||.+.+|..+. .++++|++++. .+++++++++++|+++++
T Consensus 312 ~~~~gI~~~~g~~~~--~~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 312 MKRYNIEIAGGLGPT--AGKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred HHhCCEEEecccccc--cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 765699999987432 34699999965 489999999999988763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=238.15 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=211.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCCeEEEeCCCCcChHH---HHhhhcCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGDAFLVPTPYYPGFDR---DLRWRTGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~---~~~~~~G~~~ 168 (483)
..++|+.+|++++ .++++|++|+|+++++..++.+++ ++||.|+++.+.|+.+.. .++.. |+++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~-g~~v 115 (381)
T PRK02948 45 LQVCRKTFAEMIG--------GEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQ-GYTV 115 (381)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhC-CCEE
Confidence 4567777887776 478899999999999999888875 578999999877665544 34544 9999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.+++++ ++.+|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|+++. ++.
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~vivD~~~~---~g~ 181 (381)
T PRK02948 116 TEIPVDK--SGLIRLVDLERAITP------DTVLASIQHANSEIGTIQP---IAEIGALLKKYNVLFHSDCVQT---FGK 181 (381)
T ss_pred EEEeeCC--CCCCCHHHHHHhcCC------CCEEEEEECCcCCcEeehh---HHHHHHHHHHcCCEEEEEChhh---ccc
Confidence 9999874 357899999988753 6789999999999999999 6778888889999999998765 332
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHH-----HhhhcCCCChHHHHHHHHhc
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCAR-----KMSSFGLVSSQTQHLIATML 322 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~-----~~~~~~~~s~~~q~~~~~~l 322 (483)
.+ ..+. ..+..+++.|+||.+|.+| +|+++++++. +..... .....++++.+++.++.+++
T Consensus 182 -~~-~~~~---------~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al 248 (381)
T PRK02948 182 -LP-IDVF---------EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAA 248 (381)
T ss_pred -cc-cCcc---------cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHH
Confidence 21 1211 2356677899999999888 7998885442 111100 00023557778888777777
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEe-----eecCchhhccChHHHHHHHHHHHHhcCeEe
Q 011570 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW-----MDLHHLLKEQTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~-----~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v 397 (483)
... .++.++.++++++.++++.+.|+++|+++.+.....++. +.++. . . ..++...| +++||.|
T Consensus 249 ~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~-~-----~-~~~~~~~l-~~~gI~v 317 (381)
T PRK02948 249 ENI---LKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKG-I-----E-GQYTMLEC-NRRGIAI 317 (381)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCC-C-----C-HHHHHHhc-ccCCEEE
Confidence 542 234677788899999999999999887665432122221 12221 1 1 22455555 5679999
Q ss_pred eCCCCCCC-----------------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 398 SPGSSFHC-----------------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 398 ~pg~~f~~-----------------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++|..|.. ...+++|+|++. .++++++.+++.|++++++.-
T Consensus 318 ~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 318 STGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred EchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99875321 014689999986 599999999999999877553
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=229.28 Aligned_cols=226 Identities=21% Similarity=0.318 Sum_probs=170.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~ 163 (483)
.+|+.+. ...|++.||++.+ .+++++++|+++++..++.+++++||+|+++.|+|+.+...+ +.
T Consensus 78 ~R~~~Pt-~~~Le~~lA~leg----------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~- 145 (427)
T PRK07049 78 SRFNHPN-SEIVEDRLAVYEG----------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRN- 145 (427)
T ss_pred cCCCCcC-HHHHHHHHHHHhC----------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHh-
Confidence 5676654 6899999999875 357888889899999999999999999999999999997764 33
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh---cCcEEEEccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE---KNIHLVCDEI 240 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~---~~~~iI~Dea 240 (483)
.|++++.++.. .|++.+++++.+... ..++++|++++|+||||.+++.+++.+|++.|.. ++++||+||+
T Consensus 146 ~Gi~~v~~~~~------~d~~~l~~~l~~~~~-~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 146 FGVGAVGFADG------LSEAAIGAAAEAAAA-KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred cCcEEEEEeCC------CCHHHHHHHHHhhcc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 48888777621 467788877754321 1368999999999999999999999999988654 6899999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHL 317 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~ 317 (483)
|....+. . ++ ..+..|+++||||.+| .+|+|+||++++ +.+.+.+...... ..++++.+.+
T Consensus 219 y~~~~~~--~---pl----------~~g~divv~S~SK~~gG~~glr~G~vv~~-~~l~~~l~~~~~~~g~~ls~~~a~l 282 (427)
T PRK07049 219 LLGPVFQ--K---PL----------EHGADLSVYSLTKYVGGHSDLVAGAVLGR-KALIRQVRALRSAIGTQLDPHSCWM 282 (427)
T ss_pred ccccccC--C---cc----------ccCCCEEEEcCceeecCCCCcEEEEEECC-HHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 8653221 1 11 1244688899999999 699999999984 5566655554443 3377788888
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GI 355 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi 355 (483)
+...++. +..+.++..++++.+.+.|+++ ++
T Consensus 283 ~~r~L~t-------l~~R~~~~~~~a~~la~~L~~~p~V 314 (427)
T PRK07049 283 LGRSLET-------LVLRMERANRNARAVAEFLRDHPKV 314 (427)
T ss_pred HHcCCCh-------HHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 7777753 2333455588889999999887 44
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=233.88 Aligned_cols=297 Identities=15% Similarity=0.130 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCC-------CeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG-------DAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~g-------d~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
.++++++++++.+..+ .+++++|+|+++++..+++++...+ ++|++..++|.++........+....
T Consensus 80 ~~~~~~la~~l~~~~~------~~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~ 153 (396)
T PRK02627 80 IEPQEELAEKLVELSG------MDKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKY 153 (396)
T ss_pred CHHHHHHHHHHHhhcC------CCEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccc
Confidence 6788888888886533 4899999999999999998765433 67999999998776544433222211
Q ss_pred E---eecCCCCCc----ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCc-CCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 170 P---VVCDSSNDF----KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG-TFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 170 ~---v~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
. .++.. ++ ..|++.+++++. +++++|++++++||+| .+++.+.+++|.++|++||+++|+||+|
T Consensus 154 ~~~~~~~~~--~~~~~~~~d~~~l~~~i~------~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~ 225 (396)
T PRK02627 154 QEGFEPLVE--GFIYVPFNDIEALKAAIT------DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQ 225 (396)
T ss_pred cccCCCCCC--CceEeCCCCHHHHHHhcC------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 1 11111 11 128899998874 3789999998899999 6889999999999999999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--hhcCCCChHHHHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--SSFGLVSSQTQHLIA 319 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~~~~~~s~~~q~~~~ 319 (483)
.++.+.+ . +.+.... . ..++ +.||||.++ +|+|+||++++ +.+.+.+... ...+..++++|.++.
T Consensus 226 ~g~g~~g-~-~~~~~~~-~-----~~pd---i~t~sK~~~-~G~rig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~ 292 (396)
T PRK02627 226 TGMGRTG-K-LFAYQHY-G-----IEPD---IMTLAKGLG-GGVPIGAVLAK-EKVADVFTPGDHGSTFGGNPLACAAAL 292 (396)
T ss_pred cCCCccC-c-eeeehhc-C-----CCCC---EEEEcchhh-CCcccEEEEEc-HHHHhccCCCCCCCCCCCCHHHHHHHH
Confidence 9764443 2 2222111 1 1122 237999999 99999999995 5565555431 222447888999888
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
++++.... .++.++.++.....++.+.+.+.+.+........|+++|++++. ...+++..++++ ||.+.|
T Consensus 293 ~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~~--------~~~~~~~~l~~~-Gv~v~~ 362 (396)
T PRK02627 293 AVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELDR--------PAAEIVKKALEK-GLLINV 362 (396)
T ss_pred HHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEecC--------cHHHHHHHHHHC-CeEEee
Confidence 88763221 12223222222333333433333332222223356789998832 123788888865 999998
Q ss_pred CCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 400 GSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+. .+++|++++. .+++++++++++|++++++
T Consensus 363 ~~------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~~ 394 (396)
T PRK02627 363 TG------DNVLRLLPPLIISKEEIDEAVDRLEEVLKE 394 (396)
T ss_pred cC------CCEEEEECCcccCHHHHHHHHHHHHHHHHh
Confidence 63 3679999863 5999999999999998865
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-26 Score=214.04 Aligned_cols=347 Identities=18% Similarity=0.269 Sum_probs=250.9
Q ss_pred CCCCCCCCCcccccchh--hhh----cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhC
Q 011570 39 YHPTKNPNGVIQMGLAE--NLL----CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRG 112 (483)
Q Consensus 39 ~~~~~~~~~~i~l~~~~--n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g 112 (483)
|.....+. .|||+++. +.. .++.++++-...... .....|-+..|.+++++++++++-..
T Consensus 20 f~~D~R~~-KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~-----------~~~k~Yl~i~G~~~f~~~~~~llFG~-- 85 (396)
T COG1448 20 FKADPRPN-KVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ-----------EKTKNYLPIEGLPEFLEAVQKLLFGA-- 85 (396)
T ss_pred HhcCCCcC-eeeeeeeeeeCCCCCcchhHHHHHHHHHhhcc-----------ccccccCCcCCcHHHHHHHHHHhcCC--
Confidence 44445554 48999883 222 145555544432221 13457888999999999999997521
Q ss_pred CCCC-cCCCc--EEEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHH
Q 011570 113 NRIT-FDPDR--IVMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALE 187 (483)
Q Consensus 113 ~~~~-~~~~~--i~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 187 (483)
..+ ++.+. -+=|.|+|.|+.+....+ ..|...|.+++|+|+.+..++... |.++..+|.-+..+-.+|.+.+.
T Consensus 86 -d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~a-Gl~v~~Y~Yyd~~~~~~df~~ml 163 (396)
T COG1448 86 -DSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAA-GLEVETYPYYDAETKGLDFDGML 163 (396)
T ss_pred -CcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhc-CCceeeeeccccccccccHHHHH
Confidence 111 23333 344899999999988766 346677999999999999999986 99999999866556669999999
Q ss_pred HHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC--CCcchHHHhhhhccc
Q 011570 188 AAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE--SSFVSIAEIIDQDIA 264 (483)
Q Consensus 188 ~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~--~~~~s~~~l~~~~~~ 264 (483)
+.+++. +.-.+|++--+ |||||.-++.+++++|+++.++.+.+.+.|-+|.+ |+.. .....+..+..
T Consensus 164 a~L~~a----~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQG--F~~GleeDa~~lR~~a~---- 233 (396)
T COG1448 164 ADLKTA----PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQG--FADGLEEDAYALRLFAE---- 233 (396)
T ss_pred HHHHhC----CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhh--hccchHHHHHHHHHHHH----
Confidence 998875 22334444433 99999999999999999999999999999999998 4441 12123333433
Q ss_pred cCCCeEEEEecCccccCCCCceEEEEE--ecChHHHHHHH-H-----hhhcCCCChHHHHHHHHhcCChhHHHH---HHH
Q 011570 265 CNRNLIHIVYSLSKDMGFPGFRVGIIY--SYNDQVVSCAR-K-----MSSFGLVSSQTQHLIATMLSDDQFVEK---FIA 333 (483)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~GlRiG~li--~~~~~l~~~~~-~-----~~~~~~~s~~~q~~~~~~l~~~~~~~~---~~~ 333 (483)
....+++..||||.||+-|-|+|.+. +.+++....+. . ...+.+++.-...+++.+|++++.-.+ .+.
T Consensus 234 -~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~ 312 (396)
T COG1448 234 -VGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELE 312 (396)
T ss_pred -hCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHH
Confidence 23448889999999999999999554 44444443322 1 223444555667788889998764333 356
Q ss_pred HHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 334 ESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 334 ~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
.+++++.++|..|.+.|++. .+.+...+.|||.+.-+.. +-..+|.+++||++... |
T Consensus 313 ~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~-----------~QV~rLree~~IY~v~s--------G 373 (396)
T COG1448 313 EMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSP-----------EQVDRLREEFGIYLVAS--------G 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCH-----------HHHHHHHHhccEEEecC--------C
Confidence 67899999999999999984 4788889999999875543 34677889999987632 2
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHH
Q 011570 410 WFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|||++..++..++.+.+++.++
T Consensus 374 --Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 --RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred --eeeeccCChhhHHHHHHHHHhh
Confidence 9999889999999999998765
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=222.17 Aligned_cols=293 Identities=16% Similarity=0.182 Sum_probs=205.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC--cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCC-CcC-hHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD--RIVMSGGATGAHETVAFCLADPGDAFLVPTPY-YPG-FDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~--~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~-y~~-~~~~~~~~~G~~~~~v 171 (483)
..++|+.++++++ ++++ .|++++|+++++..++..++.+||.|++..+. |+. +...++.. |.+++.+
T Consensus 33 ~~~~~~~la~~~~--------~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~-g~~~~~i 103 (355)
T TIGR03301 33 TDQVRDRLLALAG--------GDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYL-GIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHhc--------CCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHc-CCceEEE
Confidence 4677888888776 3333 68889999999999999999888887766655 443 34455554 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.++ ++.+|++.+++++++ +++++.|++++|+||||.+.+ +++|+++|+++|+++|+|++++ ++. .+
T Consensus 104 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~livD~~~s---~g~-~~ 170 (355)
T TIGR03301 104 NFSE--YEPPDLNRIEEALAA----DPDITHVATVHHETTTGILNP---LEAIAKVARSHGAVLIVDAMSS---FGA-IP 170 (355)
T ss_pred ecCC--CCCCCHHHHHHHHHh----CCCceEEEEEecCCcccchhH---HHHHHHHHHHcCCEEEEEeccc---cCC-cc
Confidence 8764 457899999999864 235678888999999999988 7888999999999999999875 333 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHHh-------------------hhcCCCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARKM-------------------SSFGLVS 311 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~~-------------------~~~~~~s 311 (483)
.++.. .+..++++|++|.+ |++| +||+++++ .+.+.+... ...+..+
T Consensus 171 -~~~~~---------~~~d~~~~s~~K~l~~~~G--~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 237 (355)
T TIGR03301 171 -IDIEE---------LDVDALIASANKCLEGVPG--FGFVIARR-DLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPP 237 (355)
T ss_pred -cchhh---------cCccEEEecCCcccccCCc--eeEEEECH-HHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCc
Confidence 22222 24557789999986 5556 69999954 444443310 0112355
Q ss_pred hHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCceeecC---CceEEEeeecCchhhccChHHHHHHHH
Q 011570 312 SQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQVGIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
.+.+.++..++.... +. +.++..++++++++++.+.|++.|+++..+ .++.++|+.++..... +..++.+
T Consensus 238 ~~~~~a~~~al~~~~--~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 311 (355)
T TIGR03301 238 THTVYAFAQALEELE--AEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDDPDF----DFDDFYQ 311 (355)
T ss_pred HHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCCCcc----hHHHHHH
Confidence 566555555543211 11 145666678888999999999888876533 3456788888752110 1225666
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSF 433 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~~~~e~l~~~l~~L~~~ 433 (483)
.|. ++||.+.+|..+. .+++||++ ++.++++++++++.|+++
T Consensus 312 ~l~-~~gi~i~~~~~~~---~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 312 ELK-ERGFVIYPGKLTL---ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HHH-HCCEEEECCcccc---ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 665 5699999986543 26899998 446999999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=227.13 Aligned_cols=293 Identities=18% Similarity=0.226 Sum_probs=206.7
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcChH----HHHhhhcC
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPGFD----RDLRWRTG 165 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~----~~~~~~~G 165 (483)
...++|+.++++++ .+ +++|++|+|+++++.+++.++ +++||+|+++++.|+... ..... .|
T Consensus 63 ~~~~~r~~ia~~~~--------~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g 133 (403)
T TIGR01979 63 AYEAVREKVAKFIN--------AASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAER-TG 133 (403)
T ss_pred HHHHHHHHHHHHhC--------cCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHh-cC
Confidence 35688999999887 34 679999999999999998875 578999999999887643 33344 49
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
.+++.++.++ ++.+|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+..
T Consensus 134 ~~~~~v~~~~--~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g- 201 (403)
T TIGR01979 134 ATLKFIPLDD--DGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVP- 201 (403)
T ss_pred cEEEEEecCC--CCCCCHHHHHHHhcc------CCeEEEEEcccccccccCC---HHHHHHHHHHcCCEEEEEchhhcC-
Confidence 9999999874 457899999998864 7899999999999999999 778888899999999999999632
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--------------------
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-------------------- 305 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-------------------- 305 (483)
. .+ .++.. .+..+++.|++|.+|.+| +|++++++ .+.+.+....
T Consensus 202 --~-~~-~~~~~---------~~~d~~~~s~~K~~gp~G--~g~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 265 (403)
T TIGR01979 202 --H-MP-VDVQA---------LDCDFYVFSGHKMYGPTG--IGVLYGKE-ELLEQMPPFLGGGEMIAEVSFEETTYNEAP 265 (403)
T ss_pred --c-cc-cCccc---------cCCCEEEEecccccCCCC--ceEEEEch-HHHhcCCCeecCCCceeecccCccccCCCh
Confidence 1 11 22211 245578899999998667 89999854 3433321100
Q ss_pred -hc--CCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcC-CceeecCC-----ceEEEeeecCchhh
Q 011570 306 -SF--GLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQV-GIGCLKSN-----AGLFLWMDLHHLLK 375 (483)
Q Consensus 306 -~~--~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~-----~g~f~~~~l~~~~~ 375 (483)
.+ ++.+.....++..+++. +.+ -.+..+++..+.++++.+.|+++ |+++..+. ++ ++.+.++.. .
T Consensus 266 ~~~~~gt~~~~~~~al~~al~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~-~v~~~~~~~-~ 340 (403)
T TIGR01979 266 HKFEAGTPNIAGVIGLGAAIDY---LEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGG-IISFNVEGV-H 340 (403)
T ss_pred hhcCCCCccHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCc-eEEEEeCCc-C
Confidence 01 12233344444444321 111 13455667777888888888877 78887553 44 555666531 1
Q ss_pred ccChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 376 EQTYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++.+ .++++||.+++|..+.. ..++++|||++. .++++++.+++.|+++++.
T Consensus 341 ------~~~~~~-~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 341 ------PHDVGT-ILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred ------HHHHHH-HHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 124444 45577999998864321 125789999986 5899999999999887664
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=225.87 Aligned_cols=274 Identities=16% Similarity=0.134 Sum_probs=184.9
Q ss_pred CcEEEeCChhHHHHHHHHHh---cC----CCCeEEEeCCCCcChHHHHhhhcCcEEE----EeecCCCCCccc--CHHHH
Q 011570 120 DRIVMSGGATGAHETVAFCL---AD----PGDAFLVPTPYYPGFDRDLRWRTGVQLV----PVVCDSSNDFKV--TMEAL 186 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l---~~----~gd~Vlv~~P~y~~~~~~~~~~~G~~~~----~v~~~~~~~~~~--d~~~l 186 (483)
+++++++|+++++..++.++ .. +||+|++++|+|+.+....... +.... ..++..+..+.. |++.+
T Consensus 85 ~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l 163 (379)
T TIGR00707 85 DRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA-TGQPKYQKGFEPLVPGFSYAPYNDIESL 163 (379)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh-cCChhhhccCCCCCCCceeeCCCCHHHH
Confidence 49999999999999998765 23 3799999999998877665544 33321 122222111111 78999
Q ss_pred HHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcccc
Q 011570 187 EAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC 265 (483)
Q Consensus 187 ~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~ 265 (483)
++.+.+ ++++|+++.++||+|.. ++.+++++|.++|+++|+++|+||+|.++.+.+ . +.+.... .
T Consensus 164 ~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g-~-~~~~~~~-~----- 229 (379)
T TIGR00707 164 KKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-K-FFAYEHY-G----- 229 (379)
T ss_pred HHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-h-hhhHHhc-C-----
Confidence 988864 68888886556777764 699999999999999999999999998754433 2 1222111 1
Q ss_pred CCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 266 ~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
..++++ ||||.++ +|+|+||++++ +.+.+.+.... ..+..++++|.++.++|+... . ....+++++++
T Consensus 230 ~~~d~~---t~sK~~~-~G~riG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~---~--~~~~~~~~~~~ 299 (379)
T TIGR00707 230 IEPDII---TLAKGLG-GGVPIGATLAK-EEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIE---K--ERLLENVKEKG 299 (379)
T ss_pred CCCCEE---EEccccc-CCcccEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH---h--hhHHHHHHHHH
Confidence 113332 7899999 99999999994 55666554321 223467888888887764211 0 12334455555
Q ss_pred HHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-C
Q 011570 344 KAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-M 418 (483)
Q Consensus 344 ~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~ 418 (483)
+.+.+.|.+. ++... +..|+|+|++++.. ..++.+.|. +.||.+.|+. .+++||+++. .
T Consensus 300 ~~~~~~l~~~~~~~~~~~~-~~~g~~~~~~~~~~--------~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~~~~ 363 (379)
T TIGR00707 300 DYFKERLEELGKNYPNKEV-RGKGLMLGIELEAP--------CKDIVKKAL-EKGLLVNCAG------PKVLRFLPPLII 363 (379)
T ss_pred HHHHHHHHHHHhhCCCCcc-ccCceEEEEEecCc--------HHHHHHHHH-HCCcEEeeCC------CCEEEEECCCcC
Confidence 6666655543 33222 23567899988641 236666665 5699999852 3689999865 5
Q ss_pred CHHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSFM 434 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l 434 (483)
+++++++++++|++++
T Consensus 364 t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 364 TKEEIDEAVSALEEAI 379 (379)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=227.37 Aligned_cols=292 Identities=17% Similarity=0.196 Sum_probs=204.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcCh----HHHHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGF----DRDLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~----~~~~~~~~G~~ 167 (483)
..++|+++|++++. .++++|++|+|++++++.++.+ ++++||+|+++++.|++. ...++.. |++
T Consensus 69 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~ 140 (406)
T PRK09295 69 MENVRKQAALFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARV-GAE 140 (406)
T ss_pred HHHHHHHHHHHcCc-------CCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHc-CcE
Confidence 46888999998862 1578999999999999999876 468999999999888643 3344444 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++++. ++.+|+++|++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...
T Consensus 141 v~~v~~~~--~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g--- 206 (406)
T PRK09295 141 LRVIPLNP--DGTLQLETLPALFDE------RTRLLAITHVSNVLGTENP---LAEMIALAHQHGAKVLVDGAQAVM--- 206 (406)
T ss_pred EEEEecCC--CCCCCHHHHHHhcCC------CcEEEEEecchhcccccCC---HHHHHHHHHHcCCEEEEEcccccC---
Confidence 99999864 456899999998853 7899999999999999999 777888899999999999999642
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh----------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM----------------------S 305 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~----------------------~ 305 (483)
. .+ .++.. .+..+++.|++|.+|.+| +||++++++ +.+.+... .
T Consensus 207 ~-~~-~~~~~---------~~~D~~~~s~~K~~gp~G--~G~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 272 (406)
T PRK09295 207 H-HP-VDVQA---------LDCDFYVFSGHKLYGPTG--IGILYVKEA-LLQEMPPWEGGGSMIATVSLTEGTTWAKAPW 272 (406)
T ss_pred c-cc-cCchh---------cCCCEEEeehhhccCCCC--cEEEEEchH-hHhhCCCcccCCceeeeeecCCccccCCchh
Confidence 2 11 22222 234577899999988666 799999544 33322100 0
Q ss_pred --hcCCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcC-CceeecCC--ceEEEeeecCchhhccCh
Q 011570 306 --SFGLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQV-GIGCLKSN--AGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 306 --~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~--~g~f~~~~l~~~~~~~~~ 379 (483)
..++.+.....++.+++.. +.+ -.+...++.++.++++.+.|.++ |+++..+. .+ .+.+.++.. .
T Consensus 273 r~e~GT~~~~~~~~l~~al~~---~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~-iv~~~~~~~-~---- 343 (406)
T PRK09295 273 RFEAGTPNTGGIIGLGAALDY---VSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH-H---- 343 (406)
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCce-EEEEEECCc-C----
Confidence 0122344444444444422 111 13445566777778888888877 77776542 44 444555531 1
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCC------CCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCP------NPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
..++... ++++||.++.|..+... .++++|+|++. .++++++.++++|+++..
T Consensus 344 --~~~~~~~-L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 344 --AYDVGSF-LDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred --HHHHHHH-HHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 1244444 56789999998865421 24689999987 599999999999987643
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=226.46 Aligned_cols=301 Identities=16% Similarity=0.159 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
.....+|++.+|++++ .++.+++++|+ ++...++..+.. +++.|+.....|......+... |.++..
T Consensus 90 ~~~~~~l~~~la~~~g---------~~~~~~~~sG~-~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~-~~~~~~ 158 (407)
T PRK09064 90 NHYHVELERELADLHG---------KEAALVFTSGY-VSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRS-RCEKHI 158 (407)
T ss_pred HHHHHHHHHHHHHHhC---------CCcEEEECcHH-HHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHc-CCcEEE
Confidence 3346788888888765 34566666664 565666666544 7777777777777666666654 777665
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++. .|++.+++.++.. ...++++|++++|+||+|.+.+ +++|.++|+++|+++|+||+|....|+. .
T Consensus 159 ~~~-------~d~~~le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~-~ 225 (407)
T PRK09064 159 FRH-------NDVAHLEELLAAA--DPDRPKLIAFESVYSMDGDIAP---IAEICDLADKYNALTYLDEVHAVGMYGP-R 225 (407)
T ss_pred ECC-------CCHHHHHHHHHhc--cCCCCeEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEECCCcccccCC-C
Confidence 553 3678888887632 1136789999999999999998 7888888899999999999997444543 2
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc---CCCChHHHHHHHHhcCChh
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF---GLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~ 326 (483)
. ..+..... + ..+.+++++||||+||++| ||+++ ++.+.+.+.... .+ ...++..+.++.+.++
T Consensus 226 g-~g~~~~~~-~---~~~~div~~t~sKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~--- 293 (407)
T PRK09064 226 G-GGIAERDG-L---MDRIDIIEGTLAKAFGVMG---GYIAG-SAALVDAVRSYAPGFIFTTSLPPAIAAAALASIR--- 293 (407)
T ss_pred C-CChHHhcC-C---CCCCeEEEEecchhhhccC---ceEec-CHHHHHHHHHhCccccccCcCCHHHHHHHHHHHH---
Confidence 1 22222211 0 1234788999999999888 99998 555666554432 22 1234444444444442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
++++. ...++++.++++++.+.|.+.|+++.++.++ ++++.++.. ....++.+.|++++||.|++...+..+
T Consensus 294 ~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-iv~i~~~~~------~~~~~l~~~L~~~~gi~v~~~~~p~~~ 365 (407)
T PRK09064 294 HLKES-NEERERHQERAAKLKAALDAAGIPVMPNESH-IVPVMVGDP------EKCKKASDMLLEEHGIYVQPINYPTVP 365 (407)
T ss_pred HHhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-EEEEEeCCH------HHHHHHHHHHHHhCCEEEeeECCCCCC
Confidence 22221 2335677888899999999989887766654 667766531 123467888887779999987544332
Q ss_pred -CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 407 -NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 -~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.+++||+++. .+++++++++++|++++++.
T Consensus 366 ~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 366 RGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34689999976 59999999999999987643
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=228.75 Aligned_cols=299 Identities=16% Similarity=0.149 Sum_probs=208.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcCh----HHHHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGF----DRDLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~----~~~~~~~~G~~ 167 (483)
..++|+.+|++++. -++++|++|+|+++++..++.. .+++||+|+++.+.|++. ...++.. |++
T Consensus 78 ~~~~r~~la~~~~~-------~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~-g~~ 149 (424)
T PLN02855 78 YELARKKVAAFINA-------STSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKT-GAV 149 (424)
T ss_pred HHHHHHHHHHHcCC-------CCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHc-CCE
Confidence 46889999999872 1357999999999999999876 368999999999988753 3334444 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++++.+ ..+|++.+++++.+ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|.. .
T Consensus 150 v~~v~~~~~--~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~---g 215 (424)
T PLN02855 150 LKFVGLTPD--EVLDVEQLKELLSE------KTKLVATHHVSNVLGSILP---VEDIVHWAHAVGAKVLVDACQSV---P 215 (424)
T ss_pred EEEEecCCC--CCcCHHHHHHHhcc------CceEEEEeCccccccccCC---HHHHHHHHHHcCCEEEEEhhhhc---C
Confidence 999998653 35899999998864 7899999999999999999 67888889999999999999952 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---------------------S 306 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---------------------~ 306 (483)
. .+ .++.. .+..+++.|++|.+|.+| +||++++++ +.+.+.... .
T Consensus 216 ~-~~-~~~~~---------~~~d~~~~s~~K~~gp~G--~G~l~~~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r 281 (424)
T PLN02855 216 H-MP-VDVQT---------LGADFLVASSHKMCGPTG--IGFLWGKSD-LLESMPPFLGGGEMISDVFLDHSTYAPPPSR 281 (424)
T ss_pred C-cC-CCchh---------cCCCEEEeecccccCCCc--cEEEEEchh-hhhcCCCEecCCCceeeeecCccccCCChhh
Confidence 2 21 22222 234577899999887556 899999544 333221110 0
Q ss_pred c--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC------ceEEEeeecCchhhcc
Q 011570 307 F--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN------AGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 307 ~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~------~g~f~~~~l~~~~~~~ 377 (483)
+ ++.+.....++..++... .+...++.+++..+.++++.+.|.++ |++++.+. .+.++.+.++.. .
T Consensus 282 ~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~-~-- 356 (424)
T PLN02855 282 FEAGTPAIGEAIGLGAAIDYL--SEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGI-H-- 356 (424)
T ss_pred ccCCChHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCc-C--
Confidence 1 112222333333443211 01124555667777788888888877 78777432 123666777631 1
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..++...|.+++||.++.|..+.. ..++++|+|++. .++++++.+++.|+++++..+.
T Consensus 357 ----~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~~ 421 (424)
T PLN02855 357 ----PTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFSS 421 (424)
T ss_pred ----HHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 225666666556999998875532 124689999976 5999999999999999887644
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-24 Score=220.62 Aligned_cols=295 Identities=16% Similarity=0.151 Sum_probs=202.2
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
...+|++.+|++++ .+.+++++|+++++..++.++..+||.|+++.+.|..+...+... |+++++++.
T Consensus 100 ~~~~le~~la~~~g----------~~~~~~~~sG~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~-g~~~~~~~~- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTG----------FESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAA-GAQAHPFRH- 167 (407)
T ss_pred HHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHC-CCeEEEecC-
Confidence 35788888888875 246688999999999999999999999999999998887777665 888776542
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
.|++.|++++++. ++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|....++. .. .+
T Consensus 168 ------~d~~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~-~g-~g 231 (407)
T PRK07179 168 ------NDVDHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGP-QG-AG 231 (407)
T ss_pred ------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHcCCEEEEECcccccCcCC-CC-Cc
Confidence 4889999988641 4678889999999999999 7788888999999999999997543332 11 12
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---cCCC-ChHHHHHHHHhcCChhHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---FGLV-SSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~---~~~~-s~~~q~~~~~~l~~~~~~~~ 330 (483)
...... + .....+++.|+||++| + |+||+++ ++.+.+.+..... +... ++....++.+++.. + .
T Consensus 232 ~~~~~~-~---~~~vdi~~~S~sK~~g-~--~~G~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~---~-~ 299 (407)
T PRK07179 232 LVAELG-L---TSRVHFITASLAKAFA-G--RAGIITC-PRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEV---I-E 299 (407)
T ss_pred hHHhcC-C---CCCCCEEEeechHhhh-c--cCeEEEe-CHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHH---H-h
Confidence 221111 0 1123578899999986 2 6899998 4556555543322 1211 22222222233321 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC-CCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH-CPNPG 409 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~-~~~~~ 409 (483)
.....+++++++++++.+.|.++|+++. +.+ .++++.++... ....+...|. ++||.+..-.... ....+
T Consensus 300 ~~~~~~~~l~~~~~~l~~~L~~~g~~v~-~~~-~i~~l~~~~~~------~~~~~~~~L~-~~GI~~~~~~~p~~~~~~~ 370 (407)
T PRK07179 300 SADDRRARLHANARFLREGLSELGYNIR-SES-QIIALETGSER------NTEVLRDALE-ERNVFGAVFCAPATPKNRN 370 (407)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCCC-CCC-CEEEEEeCCHH------HHHHHHHHHH-HCCceEeeecCCCCCCCCc
Confidence 1244567788899999999998888766 343 57777765321 1224445554 5699743211111 11356
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 410 WFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 410 ~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++||+++. .+++++++++++|++++++..
T Consensus 371 ~lRis~~~~~t~edi~~~~~~l~~~~~~~~ 400 (407)
T PRK07179 371 LIRLSLNADLTASDLDRVLEVCREARDEVD 400 (407)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHhhC
Confidence 89999976 599999999999999877653
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-25 Score=223.17 Aligned_cols=298 Identities=14% Similarity=0.141 Sum_probs=202.8
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
...+|++.+|++++ .++.++ ++++++++..++..+.. +++.|++....|......+... |.++..++
T Consensus 91 ~~~~Le~~la~~~g---------~~~~l~-~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~-g~~~~~~~ 159 (402)
T TIGR01821 91 PHVELEAELADLHG---------KESALV-FTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHS-GAEKFIFR 159 (402)
T ss_pred HHHHHHHHHHHHhC---------CCeEEE-ECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHc-CCeEEEEC
Confidence 35778888888875 234444 45557788888877765 6777777766776666666654 87776554
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
. .|++++++.++... ..++++|++++|+||||.+.+ +++|.++|+++|+++|+||+|....++. ..
T Consensus 160 ~-------~d~~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~-~g- 225 (402)
T TIGR01821 160 H-------NDVAHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEICDLADKYGALTYLDEVHAVGLYGP-RG- 225 (402)
T ss_pred C-------CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEeCcccccccCC-CC-
Confidence 2 36778888776321 125789999999999999999 7888888999999999999998444443 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c---CCCChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F---GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~ 328 (483)
..+..... . ..+.+++++||||+||++| ||+++ ++.+.+.+..... + ...++..+.++.+.++..
T Consensus 226 ~g~~~~~~-~---~~~~div~~t~sKa~g~~G---G~i~~-~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~--- 294 (402)
T TIGR01821 226 GGIAERDG-L---MHRIDIIEGTLAKAFGVVG---GYIAA-SRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHL--- 294 (402)
T ss_pred Cccchhcc-C---CCCCeEEEEechhhhccCC---ceeec-CHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHh---
Confidence 12111111 0 1134678899999999888 99988 5556666554332 1 224555666665555431
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-C
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-N 407 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~ 407 (483)
++. ...++.+.++++++.+.|+++|+++.++.++ ++.+.++.. ....++++.|++++||.+++...+..+ +
T Consensus 295 ~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~i~~~~~------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g 366 (402)
T TIGR01821 295 KES-QDLRRAHQENVKRLKNLLEALGIPVIPNPSH-IVPVIIGDA------ALCKKVSDLLLNKHGIYVQPINYPTVPRG 366 (402)
T ss_pred hcC-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-EEEEEeCCH------HHHHHHHHHHHhcCCEEEEeECCCCCCCC
Confidence 111 3334455677888999999889887777665 566666431 123467888887779999986544332 3
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++||++.. .+++++++++++|++++++
T Consensus 367 ~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 396 (402)
T TIGR01821 367 TERLRITPTPAHTDKMIDDLVEALLLVWDR 396 (402)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999965 5999999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=219.84 Aligned_cols=301 Identities=16% Similarity=0.179 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~~ 173 (483)
..++|+.++++++ .+-+.+.|++|+|+++++..++.++..+||.|+++.++|.+.. ..++.. |++++.++.
T Consensus 39 ~~~~~~~l~~l~~------~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~-g~~~~~i~~ 111 (368)
T PRK13479 39 TASVRAKLVAIAT------GEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYL-GIAHVVLDT 111 (368)
T ss_pred HHHHHHHHHHHhC------CCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHc-CCcEEEEEC
Confidence 5677777777776 1112356889999999999999999999999999988876542 555654 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
++ ++.+|++++++++.+ ..++++|++++|+||||...+ +++|.++|+++|+++|+|+++. ++. .+ .
T Consensus 112 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~---~g~-~~-~ 177 (368)
T PRK13479 112 GE--DEPPDAAEVEAALAA----DPRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSS---FGA-IP-I 177 (368)
T ss_pred CC--CCCCCHHHHHHHHHh----CCCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEcccc---cCC-cc-c
Confidence 64 356899999998864 235678999999999999999 6788888899999999996653 443 22 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHHhhhc-------------------CCCChH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARKMSSF-------------------GLVSSQ 313 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~~~~~-------------------~~~s~~ 313 (483)
++... +..+++.|++|.+ |.+| +||+++++ .+.+.+...... .+.+.+
T Consensus 178 ~~~~~---------~~d~~v~s~~K~l~g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 245 (368)
T PRK13479 178 DIAEL---------GIDALISSANKCIEGVPG--FGFVIARR-SELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTH 245 (368)
T ss_pred ccccc---------CceEEEecCccccccCCC--ceEEEECH-HHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHH
Confidence 22222 2336678999975 6677 69999954 444433221100 123444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
.+.++.+++..... ..+.++..+++.++++++.+.|.++|+++..+. .+..+.+.++.... . +..++.+.|.
T Consensus 246 ~~~~l~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~L~ 320 (368)
T PRK13479 246 VVAAFYQALLELEE-EGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHAPADPA---Y-DFKEFYERLK 320 (368)
T ss_pred HHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEECCCCCC---c-CHHHHHHHHH
Confidence 44444333322100 112455567888899999999999898765332 11122233332100 0 1226677766
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHHHHhh
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~-~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+ +||.|++|..+ ..+++|+++ ++.++++++.++++|++++++..
T Consensus 321 ~-~gi~v~~g~~~---~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~ 365 (368)
T PRK13479 321 E-QGFVIYPGKLT---QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG 365 (368)
T ss_pred H-CCEEEecCCCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4 59999998644 246899986 66799999999999999987653
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=222.54 Aligned_cols=298 Identities=15% Similarity=0.144 Sum_probs=213.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC------------C--CCeEEEeCCCCc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD------------P--GDAFLVPTPYYP 154 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~------------~--gd~Vlv~~P~y~ 154 (483)
.|+...+..++++++++++.+.+| .+.+++++++|+|+++++..++.++.. + ++.|+++.++|.
T Consensus 29 ~y~~~~~~~~le~~~~~~~~~~~g--~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~ 106 (345)
T cd06450 29 TWDESPAATEMEAEVVNWLAKLFG--LPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHV 106 (345)
T ss_pred ccccCchhHHHHHHHHHHHHHHhC--CCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchh
Confidence 487777889999999999998877 222456899999999999999988742 2 348889999999
Q ss_pred ChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 155 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
.+...+... |.+++.++++++ +.+|++.|++++.+...++.++++|++++|+||||.+.+ +++|+++|+++|++
T Consensus 107 ~~~~~~~~~-g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~ 180 (345)
T cd06450 107 SVEKAAAYL-DVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLW 180 (345)
T ss_pred HHHHHHHHH-hcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCe
Confidence 988888876 999999998754 479999999999875555557888999999999999876 88889999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHH
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT 314 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~ 314 (483)
+++|++|+.+.+.. ...... ... ..+...+..|++|.++ ++.++|+++.+ ...
T Consensus 181 l~vD~a~~~~~~~~-~~~~~~---~~~----~~~~d~~~~s~~K~l~-~p~g~g~~~~~------------------~~~ 233 (345)
T cd06450 181 LHVDAAYGGFLLPF-PEPRHL---DFG----IERVDSISVDPHKYGL-VPLGCSAVLVR------------------ALK 233 (345)
T ss_pred EEEechhhHHHhhC-hhhHHH---hcC----ccccCEEEEchhHhhC-CCcchHHHHHH------------------HHH
Confidence 99999998754322 111111 110 1123345679999775 77788887763 333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
+.++...+.... +++..+++.+.++++.+.|.++ ++++.. +.++ ++.+.++.... .. ....++.+.|.+
T Consensus 234 ~~~~l~~l~~~g-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-iv~f~~~~~~~-~~-~~~~~i~~~L~~- 304 (345)
T cd06450 234 LWATLRRFGRDG-----YGEHIDRIVDLAKYLAELIRADPGFELLGEPNLS-LVCFRLKPSVK-LD-ELNYDLSDRLNE- 304 (345)
T ss_pred HHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcee-EEEEEECCcch-hh-HHHHHHHHHHHh-
Confidence 444444444332 4555667777888899999887 677654 4555 55555553100 00 112366777764
Q ss_pred cCeEeeCCCCCCCCCCCEEEEEecc-C-CHHHHHHHHHHHHH
Q 011570 393 VKLNVSPGSSFHCPNPGWFRVCFAN-M-DDRTMEIALSRITS 432 (483)
Q Consensus 393 ~gV~v~pg~~f~~~~~~~iRis~~~-~-~~e~l~~~l~~L~~ 432 (483)
+|+.+.++..+. .++++|++++. . +.++++++++.|++
T Consensus 305 ~g~~~~~~~~~~--~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 305 RGGWHVPATTLG--GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred cCCEEEEeeEEC--CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 466555554443 45689999975 3 89999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=224.73 Aligned_cols=289 Identities=17% Similarity=0.186 Sum_probs=197.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHH----HHhhhcCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDR----DLRWRTGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~----~~~~~~G~~~ 168 (483)
..++|+.++++++ .++++|++++|+++++..++.++ ++|||+|+++.|.|.+... .++.. |+++
T Consensus 62 ~~~l~~~ia~~~~--------~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~-g~~~ 132 (397)
T TIGR01976 62 VDDAREAVADLLN--------ADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERA-GAKV 132 (397)
T ss_pred HHHHHHHHHHHcC--------CCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhc-CCEE
Confidence 3577888888776 45668999999999998887775 6899999999999876543 33444 9999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.++++++ ++.+|++.+++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|+++.. ..
T Consensus 133 ~~~~~~~~-~~~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~---~~ 199 (397)
T TIGR01976 133 KWARVDEA-TGELHPDDLASLLSP------RTRLVAVTAASNTLGSIVD---LAAITELVHAAGALVVVDAVHYA---PH 199 (397)
T ss_pred EEEecccc-CCCcCHHHHHHhcCC------CceEEEEeCCCCCCCccCC---HHHHHHHHHHcCCEEEEehhhhc---cc
Confidence 99988653 367899999998853 6899999999999999998 88888889999999999999842 21
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc------------CCCChHH--
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF------------GLVSSQT-- 314 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~------------~~~s~~~-- 314 (483)
....+..+ +..+++.|++|.+| .|+||+++++ .+.+.+...... ++.+...
T Consensus 200 --~~~~~~~~---------~~d~~~~s~~K~~g---~~~G~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~ 264 (397)
T TIGR01976 200 --GLIDVQAT---------GADFLTCSAYKFFG---PHMGILWGRP-ELLMNLPPYKLTFSYDTGPERFELGTPQYELLA 264 (397)
T ss_pred --cCCCHHHc---------CCCEEEEechhhcC---CceEEEEEcH-HHHhhCCCccccCccCCCcchhcCCCCCHHHHH
Confidence 11232222 34466789999875 4689999954 444333221110 1112122
Q ss_pred -HHHHHHhcCChh---------HHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecC-----CceEEEeeecCchhhccC
Q 011570 315 -QHLIATMLSDDQ---------FVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKS-----NAGLFLWMDLHHLLKEQT 378 (483)
Q Consensus 315 -q~~~~~~l~~~~---------~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~-----~~g~f~~~~l~~~~~~~~ 378 (483)
..++..++.+.+ .+.++.++..++..+.++++.+.|.+++ +++..+ .++ ++.+.++.. +
T Consensus 265 ~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~--- 339 (397)
T TIGR01976 265 GVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVP-TVSFTVHGL-P--- 339 (397)
T ss_pred HHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCc-eEEEEeCCc-C---
Confidence 222222222111 0011245566677778888999998874 887654 343 666666531 1
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCC--------C-CCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFH--------C-PNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~--------~-~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
..++.++|. ++||.++.|..|. . ...+++|||+.. .++++++.++++|
T Consensus 340 ---~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 340 ---PQRVVRRLA-DQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred ---HHHHHHHHH-HCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 225666665 5699999886653 1 134689999966 5899999998764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=217.87 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=206.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCC--CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDP--DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~v 171 (483)
..++|+.++++++ .++ ++|++|+|+++++..++.++..+||.+++..+++.+. ...++.. |.+++.+
T Consensus 37 ~~~~r~~la~l~~--------~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~-g~~~~~v 107 (363)
T TIGR02326 37 VEQIRQQLLALAT--------AEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYL-GIPHHVV 107 (363)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEE
Confidence 3566777777766 344 4799999999999999999999998888776665443 3445554 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ +..+|++.+++++.+ ..++++|.+++++||||.+++ +++|.++|+++|+++|+|++++ ++. .+
T Consensus 108 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~-~~ 174 (363)
T TIGR02326 108 DTGE--VEPPDVVEVEAILAA----DPAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGG-IP 174 (363)
T ss_pred eCCC--CCCCCHHHHHHHHhh----CCCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccC-cc
Confidence 9864 446899999998874 235678889999999999999 7899999999999999999876 443 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHH--------------hh-----hcCCCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARK--------------MS-----SFGLVS 311 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~--------------~~-----~~~~~s 311 (483)
.++..+ +..+++.|++|.+ |.+| +||++++++.+...... .. ..+..+
T Consensus 175 -~~~~~~---------~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~ 242 (363)
T TIGR02326 175 -IDIAEL---------HIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSP 242 (363)
T ss_pred -cchhhc---------CccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCc
Confidence 333322 3447789999987 4455 79999955443321100 00 012345
Q ss_pred hHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCceeecC---CceEEEeeecCchhhccChHHHHHHHH
Q 011570 312 SQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQVGIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
.+.+.++.+++..- ... ..++..++++++++++.+.|+++|++...+ .++..+|+.++.... . +..++.+
T Consensus 243 ~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~v~~ 316 (363)
T TIGR02326 243 THVVHAFAQALLEL--EKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSFYSPEDPD---Y-RFADFYQ 316 (363)
T ss_pred HHHHHHHHHHHHHH--HHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEEECCCCCC---C-CHHHHHH
Confidence 55666655444321 111 245567888999999999999888876543 345567787764210 0 1225566
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~~~~e~l~~~l~~L~~~l 434 (483)
.|. ++||.+++|..+. .+++||++ +..+.++++.++++|++++
T Consensus 317 ~L~-~~gi~v~~g~~~~---~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 317 RLK-EQGFVIYPGKVSQ---VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred HHH-HCCEEEECCcCCC---CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 665 5699999997652 46899996 6579999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-25 Score=221.73 Aligned_cols=218 Identities=16% Similarity=0.187 Sum_probs=163.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHh----hhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLR----WRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~----~~~G~~~~~v 171 (483)
..+|++.+|++++ .+.+++++|+++++..++.+++++||+|+++.|.|+.+...+. ...|++++.+
T Consensus 78 ~~~LE~~lA~l~g----------~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~ 147 (418)
T PLN02242 78 VLNLGRQMAALEG----------TEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFV 147 (418)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEc
Confidence 5788888888865 3567899999999999999999999999999999988866552 1138777766
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ .++++|++++|+||||.+.+ +++|+++|+++|++||+|++|..+.+..
T Consensus 148 d~-------~d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~--- 209 (418)
T PLN02242 148 DI-------TDLEAVKKAVVP-----GKTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSP--- 209 (418)
T ss_pred CC-------CCHHHHHHhcCc-----CCCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCH---
Confidence 53 278899888853 14899999999999999987 8888999999999999999997543211
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCce-EEEEEecChHHHHHHHHhhh----cCCCChHHHHHHHHhcCChh
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR-VGIIYSYNDQVVSCARKMSS----FGLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR-iG~li~~~~~l~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~ 326 (483)
..+ +.+++++||||.++.+|.+ .||++++ +.+.+.+..... ........|.+...++...
T Consensus 210 ----~~~---------g~divv~S~SK~l~g~g~~~gG~iv~~-~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~- 274 (418)
T PLN02242 210 ----ARL---------GADVVVHSISKFISGGADIIAGAVCGP-AELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP- 274 (418)
T ss_pred ----HHc---------CCcEEEEeCccccCCCCCceEEEEEcC-HHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-
Confidence 111 3458899999999988987 5899984 555555543322 2223444566665555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
. +..+.+++.++++++.+.|+++++++..|
T Consensus 275 t----l~~r~~~~~~~a~~la~~L~~~~~~V~yP 304 (418)
T PLN02242 275 H----LSLRMKEHCRRAMEYAKRMKELGLKVIYP 304 (418)
T ss_pred c----HHHHHHHHHHHHHHHHHHHHhCCCEEECC
Confidence 2 34456678899999999999988777644
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=218.55 Aligned_cols=307 Identities=15% Similarity=0.166 Sum_probs=206.7
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
....++|+.+|++++ .+++++++|+++++..++.+++++||+|+++.++|......++.. |++++.++.
T Consensus 63 ~~~~~l~~~lA~~~g----------~~~~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v~~ 131 (387)
T PRK09331 63 PPIADFHEDLAEFLG----------MDEARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERA-GLNVREVPK 131 (387)
T ss_pred hHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeC
Confidence 347899999999986 246889999999999999999999999999999988777777765 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHh-cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQE-SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+.+.++.+|++.+++++++... .++++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+. +. -+
T Consensus 132 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~I~~la~~~g~~livD~a~~~---g~-~~- 203 (387)
T PRK09331 132 TGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKKVAKVAHEYGIPFLLNGAYTV---GR-MP- 203 (387)
T ss_pred ccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCccc---CC-cC-
Confidence 4333678999999999975311 2246899999999999999888 88889999999999999999973 21 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhcC------CCChHHHHHHHHhcCCh
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFG------LVSSQTQHLIATMLSDD 325 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~~------~~s~~~q~~~~~~l~~~ 325 (483)
.+...+ +..+++.|++|+++ ++.++||++++ +.+.+.+... ..+. ...+..+..+..++..-
T Consensus 204 ~~~~~~---------g~D~~~~s~~K~l~-~~~~~G~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal 272 (387)
T PRK09331 204 VDGKKL---------GADFIVGSGHKSMA-ASAPSGVLATT-EEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF 272 (387)
T ss_pred CCHHHc---------CCCEEEeeCccccc-CCCCEEEEEEC-HHHHhhcccccCCCcccceeeeceecCchHHHHHHHHH
Confidence 222222 34577899999997 66699999995 4444443222 1110 00111111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec--CCceEEEeeecCchhhc--cChHHHHHHHHHHHHhcCeEeeCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK--SNAGLFLWMDLHHLLKE--QTYEAEMALWRVIINEVKLNVSPG 400 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~~~gV~v~pg 400 (483)
+.+.+... ..++..++.+++.+.|.++ |+++.. +....++.++.+..... ........+.+.|. ++||...+.
T Consensus 273 ~~~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~gI~~~~~ 350 (387)
T PRK09331 273 PHVVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELK-KRGIHGIKP 350 (387)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHH-HcCceEEcc
Confidence 22223332 2344456667889999999 998873 22334666666621110 00011235667775 569974321
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 401 SSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.....+|++....++++++.++++|++++++.
T Consensus 351 -----~~~~i~ri~~~g~t~~di~~l~~aL~~i~~~~ 382 (387)
T PRK09331 351 -----GATKEFKLSTYGLTWEQVEYVADAFKEIAEKY 382 (387)
T ss_pred -----CCceEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 12345777774479999999999999887753
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=8e-25 Score=219.63 Aligned_cols=294 Identities=16% Similarity=0.217 Sum_probs=198.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----Hhhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~ 163 (483)
.+|+.+. ..+|++.+|++.+ . +..++++|+++++..++ .++++||+|+++.|+|+..... ++..
T Consensus 47 ~r~~~pt-~~~le~~la~l~g--------~--~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 114 (366)
T PRK08247 47 SRTGNPT-RGVLEQAIADLEG--------G--DQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKW 114 (366)
T ss_pred cCCCCch-HHHHHHHHHHHhC--------C--CcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence 4555543 6889999999876 2 23477788889999876 5789999999999999875433 3344
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|++++.++. .|++.+++++.+ ++++|++++|+||+|. ..++++|+++|+++|+++|+|++|..
T Consensus 115 -G~~v~~vd~-------~d~~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~ 177 (366)
T PRK08247 115 -NVRFVYVNT-------ASLKAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYT 177 (366)
T ss_pred -CceEEEECC-------CCHHHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 999888774 378899988864 7899999999999865 55699999999999999999999954
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~ 320 (483)
..+. . ++ .....++++|+||.++- ++++.||++++++.+.+.+...... ..++++.+.++..
T Consensus 178 ~~~~--~---p~----------~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~ 242 (366)
T PRK08247 178 PVLQ--R---PL----------EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIR 242 (366)
T ss_pred cccc--C---ch----------hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHh
Confidence 3221 1 11 12456889999999863 3579999998656666555443332 3356667766666
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-e-ecCCceEEEeeecCchhhccChHHHH---HHHHHHHHhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIG-C-LKSNAGLFLWMDLHHLLKEQTYEAEM---ALWRVIINEVK 394 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~-~~~~~g~f~~~~l~~~~~~~~~~~~~---~~~~~Ll~~~g 394 (483)
.++. +..+.++.+++++.+.+.|+++ ++. + +++.||+|.| ++........+.+.. .++..|.....
T Consensus 243 ~l~t-------l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~~~~~~~~~~~l~~~~~~~slg~~~s 314 (366)
T PRK08247 243 GMKT-------LALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQDEEWVNPFLKSLKLITFAESLGGVES 314 (366)
T ss_pred ccCc-------HHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECCHHHHHHHHHcCCcceEccCCCCCce
Confidence 5553 2334445688889999999987 665 3 4447888877 664210000000000 11222223345
Q ss_pred eEeeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 395 LNVSPGSSFHCP-----------NPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 395 V~v~pg~~f~~~-----------~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+.+.|++.+... .++.+||++|. |+.+.+++.|.+++++
T Consensus 315 l~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl---E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 315 FITYPATQTHADIPEEIRIANGVCNRLLRFSVGI---ENVEDLIADLKQAFKQ 364 (366)
T ss_pred EEECCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHhh
Confidence 677788655321 24579999984 5577777777777764
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=218.53 Aligned_cols=306 Identities=14% Similarity=0.169 Sum_probs=214.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-----CC-CCeEEEeCCCCcChHHH---
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-----DP-GDAFLVPTPYYPGFDRD--- 159 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-----~~-gd~Vlv~~P~y~~~~~~--- 159 (483)
.|+. .+...+++++++++... + . .++++|++|+|+++++..++.++. ++ +++|+++.+.|+.+...
T Consensus 35 ~~~~-~~~~~l~~a~~~~~~~~-~--~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~ 109 (382)
T TIGR03403 35 QFGT-ATHPAIAEALDKLYKGI-N--A-RDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAF 109 (382)
T ss_pred HHHH-HHHHHHHHHHHHHHHHc-C--c-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHH
Confidence 4543 35678999999888632 2 1 267899999999999999998762 45 47899998777665544
Q ss_pred HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 160 LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 160 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
++. .|++++.+|++++ +.+|++.+++++.+ +++++++++|+||||.+++ +++|.++|+++|+++++|+
T Consensus 110 ~~~-~G~~v~~v~~~~~--g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~~ivD~ 177 (382)
T TIGR03403 110 LES-LGVEVTYLPINEQ--GTITAEQVREAITE------KTALVSVMWANNETGMIFP---IKEIGEICKERGVLFHTDA 177 (382)
T ss_pred HHH-CCCEEEEEecCCC--CCCCHHHHHHhccc------CCeEEEEEcccCCCccccC---HHHHHHHHHHcCCEEEEec
Confidence 334 4999999998753 57899999998864 6789999999999999999 6678888889999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHH-----HhhhcCCCChH
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCAR-----KMSSFGLVSSQ 313 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~-----~~~~~~~~s~~ 313 (483)
++.. .. .+ .++.. ....+++.|++|.+|.+| +|+++..+.. +...+. .....++++.+
T Consensus 178 a~~~---g~-~~-~~~~~---------~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~ 241 (382)
T TIGR03403 178 VQAI---GK-IP-VDVQK---------AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVP 241 (382)
T ss_pred hhhc---CC-Cc-cCccc---------cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChH
Confidence 9862 22 11 12211 123367789999988778 5888764332 111110 00113556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc---eEEEeeecCchhhccChHHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
.+.++...+.. ..++++...+++++.++++.+.|.++ |+.+..+.. ..++.+.++. .+ ...+...|
T Consensus 242 ~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~L 311 (382)
T TIGR03403 242 YIVAMGEAMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKG-VE------GEAMLWDL 311 (382)
T ss_pred HHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCC-CC------HHHHHHhh
Confidence 77666666642 23345666788888999999999876 788776531 2355566642 11 12455554
Q ss_pred HHhcCeEeeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 390 INEVKLNVSPGSSFHCP-----------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.++||.++.|+.|... ..+.+|+|++. .+++++++++++|++++++.+
T Consensus 312 -~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 312 -NKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred -ccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5679999988765311 12579999987 699999999999999887754
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-24 Score=216.84 Aligned_cols=309 Identities=12% Similarity=0.100 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEE
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVP 170 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~ 170 (483)
.+..++++.+.+.+.+.+| .++ +.+++++|+++++..++..++++||+|++.++.|... ...++.. |++++.
T Consensus 38 ~~~~~~~~~~~~~l~~~~g----~~~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~~~~~~~~-g~~v~~ 112 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFK----TKSGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLWIDQMQRL-NFDVDV 112 (401)
T ss_pred HHHHHHHHHHHHHHHHHhC----CCCCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHc-CCceEE
Confidence 3567888888888887766 344 4688899999999999999999999999999988654 3555654 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.+.+ ..+|++.+++++++. .++++++|++++++||||.+++.+++.++++ |+++|+++|+|++++. .. .
T Consensus 113 v~~~~~--~~~~~~~l~~~l~~~--~~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~~~~g~~~vvD~v~s~---g~-~ 183 (401)
T PLN02409 113 VESPWG--QGADLDILKSKLRQD--TNHKIKAVCVVHNETSTGVTNDLAGVRKLLD-CAQHPALLLVDGVSSI---GA-L 183 (401)
T ss_pred EECCCC--CCCCHHHHHHHHhhC--cCCCccEEEEEeecccccccCCHHHHHHHHh-hhccCcEEEEEccccc---CC-c
Confidence 998753 347899999998741 0026899999999999999999766666666 9999999999999862 22 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh------------------h--cCCC
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS------------------S--FGLV 310 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~------------------~--~~~~ 310 (483)
+ .++. ..+..+++.|.+|+++.| .++||++.+++ +.+.+.... . .++.
T Consensus 184 ~-id~~---------~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp 251 (401)
T PLN02409 184 D-FRMD---------EWGVDVALTGSQKALSLP-TGLGIVCASPK-ALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTP 251 (401)
T ss_pred c-cccc---------ccCccEEEEcCccccCcC-CCcceeEECHH-HHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCc
Confidence 1 1211 124447777889998643 37999999544 444332210 0 1123
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
+...+.++..++..- .+.-.++.++++++.++++.+.|++.|+++..+. .+..+++.+|...+. .++.
T Consensus 252 ~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p~~~~~------~~l~ 323 (401)
T PLN02409 252 SIQLLYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVPEGIDS------AEIV 323 (401)
T ss_pred cHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCCCCCCH------HHHH
Confidence 333444554444321 1223566778888889999999988898876542 223456777754332 2677
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
..+++++||.+.+|..- ...+.|||+... .+++++..++.+|++++.+..
T Consensus 324 ~~l~~~~~i~i~~G~~~--~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 324 KNAWKKYNLSLGLGLNK--VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred HHHHHhCCEEEEcCCCc--ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 78888999999998642 245789999955 699999999999999988754
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=220.81 Aligned_cols=297 Identities=13% Similarity=0.110 Sum_probs=199.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.|+...+ .+|.+.++++++ . .+++++++++|+++++..++..+..+| +.|+..+++|+++........|..
T Consensus 81 ~~~~~~~-~~la~~l~~~~~------~-~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 152 (398)
T PRK03244 81 LFATEPQ-IALAERLVELLG------A-PEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQP 152 (398)
T ss_pred ccCCHHH-HHHHHHHHHhCC------C-CCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCc
Confidence 4554332 455555555433 1 135799999999999999998776666 567777889987754433222321
Q ss_pred ------------EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHH-HHHHHHHHhhcCcE
Q 011570 168 ------------LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRET-LKDIVSFINEKNIH 234 (483)
Q Consensus 168 ------------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~-l~~i~~~a~~~~~~ 234 (483)
++.+|. .|++.+++.+. .++++|+++.++||||.+++.++ +++|.++|++||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~------~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 219 (398)
T PRK03244 153 AKRAPFEPLPGGVEHVPY-------GDVDALAAAVD------DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGAL 219 (398)
T ss_pred ccccCCCCCCCCceEeCC-------CCHHHHHHhhc------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 222221 27888888774 27889999988999999997655 99999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCCh
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSS 312 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~ 312 (483)
+|+||+|.++...+ . .... .... ..+++ .||||++| +|+|+||++++ +.+.+.+.. ....+..++
T Consensus 220 lI~DEv~~g~gr~g-~-~~~~-~~~~-----~~pDi---~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~ 286 (398)
T PRK03244 220 LVLDEVQTGIGRTG-A-WFAH-QHDG-----VTPDV---VTLAKGLG-GGLPIGACLAF-GPAADLLTPGLHGSTFGGNP 286 (398)
T ss_pred EEEeccccCCcccc-h-HHhh-hhhC-----CCCCE---EEEchhhh-CCcccEEEEEc-HHHHhhccCCCCcCCCCCCH
Confidence 99999998743333 2 1111 1111 11222 38899999 99999999995 446655543 122245788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee--ecCCceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 313 QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC--LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
+++.++.++|+.-. .....++++++.+++.+.|++++... .....|+++|+.++.. ....+...++
T Consensus 287 ~~~aaa~a~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-------~~~~~~~~l~ 354 (398)
T PRK03244 287 VACAAALAVLDTIA-----SEGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-------VAKAVEAAAR 354 (398)
T ss_pred HHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-------HHHHHHHHHH
Confidence 88888888764211 01223445556677888887754421 2234678999998631 1235677776
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+ +||.+.+. ..+.+|++++. .+++++++++++|++++++.+
T Consensus 355 ~-~Gv~~~~~------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 355 E-AGFLVNAV------APDVIRLAPPLIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred H-CCeEEeec------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 5 69999874 13689999876 699999999999999997643
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-24 Score=218.49 Aligned_cols=327 Identities=16% Similarity=0.147 Sum_probs=216.7
Q ss_pred CCcccccchhhhhcH-HHHHHHHhcCCCCccccccccccccccccCCC-----CCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAENLLCH-ELVEDWLMNNPKASICSAEGLNEFKGIAIFQD-----YHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++++++.+++.+++ +.+.+...+. . ....|.+ ..|.+++++++++++.+.+| .+.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~--~------------~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g----~~~ 81 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN--E------------FYTAYTPYQPEISQGRLQALFELQTMLCELTG----MDV 81 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc--c------------CcccCCCCChhhhhhHHHHHHHHHHHHHHHHC----CCc
Confidence 345888988877764 4444444332 0 1123544 67899999999999998877 455
Q ss_pred CcEEEeCC-hhHHHHHHHHHhcCC--CCeEEEeCCCCcChHHHHhhhcC----cEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 120 DRIVMSGG-ATGAHETVAFCLADP--GDAFLVPTPYYPGFDRDLRWRTG----VQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 120 ~~i~it~G-~~~al~~~~~~l~~~--gd~Vlv~~P~y~~~~~~~~~~~G----~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
++++++++ ++++...+..+++.+ ||+|++++|.|+.+...+... | .+++.++.++ ++.+|++.+++++.+
T Consensus 82 ~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~ 158 (398)
T cd00613 82 ANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTR-GEPLGIEVVEVPSDE--GGTVDLEALKEEVSE 158 (398)
T ss_pred cceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHh-cccCCcEEEEeccCC--CCCcCHHHHHHhcCC
Confidence 57777764 445555666666676 999999999999998887765 6 8998888754 357899999988853
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
++++|++++|+ |||.+. +.+++|.++|+++|+++|+|+++....... ... ..+..++
T Consensus 159 ------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~-----~~~---------~~~~d~~ 215 (398)
T cd00613 159 ------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLK-----PPG---------EYGADIV 215 (398)
T ss_pred ------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEeccccccCCC-----ChH---------HcCCCEE
Confidence 78999999985 899994 446999999999999999999875321111 111 1245688
Q ss_pred EecCccccCCC----CceEEEEEecChHHHHHHHH------------------------------hhhc-CCCC-hHHHH
Q 011570 273 VYSLSKDMGFP----GFRVGIIYSYNDQVVSCARK------------------------------MSSF-GLVS-SQTQH 316 (483)
Q Consensus 273 ~~S~SK~~g~~----GlRiG~li~~~~~l~~~~~~------------------------------~~~~-~~~s-~~~q~ 316 (483)
+.|+||.+ +| |+|+||++.++ .+.+.+.. .... ...+ ...+.
T Consensus 216 ~~s~~K~~-~p~g~Ggp~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~ 293 (398)
T cd00613 216 VGNLQKTG-VPHGGGGPGAGFFAVKK-ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALM 293 (398)
T ss_pred EeeccccC-CCCCCCCCceeEEEEhh-hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHH
Confidence 89999998 56 79999999954 34333200 0000 1011 12233
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE--EeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF--LWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f--~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
+.+.+.... +...++.+++++++++++.+.|.+++... .+.+.++ ++++++... . ....+++..|++ +|
T Consensus 294 a~~~l~~~~---~~g~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~v~~~~~~~~---~-~~~~~~~~~L~~-~g 364 (398)
T cd00613 294 AAMYIVYLG---PEGLKEIAERAHLNANYLAKRLKEVGGVL-PFNGPFFHEFVLRLPPLY---G-IRAEDLAKALID-GG 364 (398)
T ss_pred HHHHHHHhC---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cCCCCeeEEEEEEcCCcc---h-HHHHHHHHhhhh-cC
Confidence 332222111 22346667788899999999998875433 2333333 567766310 0 123467888775 58
Q ss_pred eEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 395 LNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 395 V~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
|.+.... ....+.+|+++.. .++++++++++.|
T Consensus 365 i~~~~~~---~~~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 365 FHAPTMY---LPVDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred ccccccc---cCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 8764321 1235689999976 5999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=217.62 Aligned_cols=288 Identities=20% Similarity=0.249 Sum_probs=199.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHhcC---CCCeEEEeCCCCcChHH----HHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCLAD---PGDAFLVPTPYYPGFDR----DLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~~---~gd~Vlv~~P~y~~~~~----~~~~~~G~~ 167 (483)
..++|+.++++++ .+ +++|++|+|+++++..++.++.. +||+|+++.++|+.... ..+. .|++
T Consensus 45 ~~~~~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~ 115 (373)
T cd06453 45 YEAAREKVARFIN--------APSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAER-TGAK 115 (373)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhh-cCcE
Confidence 5678888888886 34 78999999999999999999987 89999999999987532 2334 4999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++.++ ++.+|++.+++.+.+ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|...
T Consensus 116 ~~~v~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~li~D~a~~~~--- 181 (373)
T cd06453 116 LKVVPVDD--DGQLDLEALEKLLTE------RTKLVAVTHVSNVLGTINP---VKEIGEIAHEAGVPVLVDGAQSAG--- 181 (373)
T ss_pred EEEeecCC--CCCcCHHHHHHHhcC------CceEEEEeCcccccCCcCC---HHHHHHHHHHcCCEEEEEhhhhcC---
Confidence 99999864 457999999998864 7899999999999999999 678888888999999999998632
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---------------------
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--------------------- 306 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--------------------- 306 (483)
. .+ .++.. ....+++.|++|.++. .++||++++ +.+.+.+.....
T Consensus 182 ~-~~-~~~~~---------~~~d~~~~s~~K~~~~--~g~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 247 (373)
T cd06453 182 H-MP-VDVQD---------LGCDFLAFSGHKMLGP--TGIGVLYGK-EELLEEMPPYGGGGEMIEEVSFEETTYADLPHK 247 (373)
T ss_pred c-ee-eeccc---------cCCCEEEeccccccCC--CCcEEEEEc-hHHhhcCCCeecCCCccccccccccccCCCccc
Confidence 1 11 11111 1234566788999974 568999995 444433322110
Q ss_pred c--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC--ceEEEeeecCchhhccChHH
Q 011570 307 F--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN--AGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 307 ~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~--~g~f~~~~l~~~~~~~~~~~ 381 (483)
+ ++.+.....++...+.... +.-.++..++..+.++++.+.|.++ |+++..+. .+.++++.++.. +
T Consensus 248 ~~~~t~~~~~~~al~~al~~l~--~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 318 (373)
T cd06453 248 FEAGTPNIAGAIGLGAAIDYLE--KIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGI-H------ 318 (373)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCc-C------
Confidence 1 1122223333333332110 1113455566677788888989887 67766321 234667777531 1
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
..++.+.|. ++||.+.+|..+.. ..++++|++++. .++++++++++.|
T Consensus 319 ~~~i~~~l~-~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 319 PHDVATILD-QYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHHHHHH-HCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 225666665 46999988865431 135789999986 5999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-24 Score=216.39 Aligned_cols=346 Identities=15% Similarity=0.103 Sum_probs=213.6
Q ss_pred CCCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
....+||+..+. +.++ ++.+.+++.+.. .....|+...+..++...+++.+.+.++ .+.
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 96 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL-------------AKLTHFSLGFFYNEPAVELAELLLALTP----EGL 96 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHH-------------HhCcCccCcccCCHHHHHHHHHHHHhCC----CCC
Confidence 345678888763 2333 344444443311 1123444433345566666666665544 367
Q ss_pred CcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC------------cEEEEeecCCC----CCccc
Q 011570 120 DRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG------------VQLVPVVCDSS----NDFKV 181 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G------------~~~~~v~~~~~----~~~~~ 181 (483)
+++++++|+++++..++.++. .+++.|++.+++|++.........+ .+++.+|.++. ..+..
T Consensus 97 ~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (413)
T cd00610 97 DKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELAD 176 (413)
T ss_pred CEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHH
Confidence 899999999999999998773 6789999999999886554433212 23556665421 12455
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhh
Q 011570 182 TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260 (483)
Q Consensus 182 d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~ 260 (483)
|++.|++.+.++ ..++++|++...+|++|.++ +.+++++|.++|++||+++|+||+|.++...+ .. .. .....
T Consensus 177 d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g-~~-~~-~~~~~ 250 (413)
T cd00610 177 DLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTG-KM-FA-FEHFG 250 (413)
T ss_pred HHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-ch-hh-HhhcC
Confidence 888998888642 12455444443467779876 67789999999999999999999998642222 11 11 11111
Q ss_pred hccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH--HHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHH
Q 011570 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA--RKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~--~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (483)
.... +.|+||.++ .|+|+||+++ ++.+.+.+ .... ..+..+++++.++.+.++. +.+ ....
T Consensus 251 -----~~~d---~~t~sK~l~-~g~~~g~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~---l~~--~~~~ 315 (413)
T cd00610 251 -----VEPD---IVTLGKGLG-GGLPLGAVLG-REEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEV---LEE--EGLL 315 (413)
T ss_pred -----CCCC---eEEEccccc-CccccEEEEE-cHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH---HHh--ccHH
Confidence 1112 348999998 5899999998 56666654 2222 1234566777766655532 111 1233
Q ss_pred HHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhc--cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 337 KRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKE--QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
++++++.+++.+.|++. ++.......|.++|+.++..... ........+++.|++ +||.+.|+. .++
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gv~v~~~~------~~~ 388 (413)
T cd00610 316 ENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALE-RGLLLRPSG------GNV 388 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHH-CCeEEeecC------CCE
Confidence 44555555565555543 22222234467888888642100 001123467777664 599999874 457
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+|++++. .+++++++++++|++++
T Consensus 389 lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 389 IRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhC
Confidence 9999876 48999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=213.68 Aligned_cols=286 Identities=15% Similarity=0.144 Sum_probs=187.6
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-----HhhhcCcEEEEeecCCCCCcccCHHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-----LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
.+..+|++++| ++++..++.++++|||+|+++.|+|+.+... +.. .|.+++.++++.+ ++.+|+++++++++
T Consensus 86 ~~~~~i~~~sg-t~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~d~~~l~~~i~ 162 (416)
T PRK00011 86 AEYANVQPHSG-SQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSG-KLYNVVSYGVDEE-TGLIDYDEVEKLAL 162 (416)
T ss_pred CCceeeecCCc-hHHHHHHHHHhcCCCCEEEEeccccCCcccccccccccc-ceeeEeecCcCcc-cCCcCHHHHHHHHH
Confidence 45556776665 6789999999999999999999999765321 122 2678888887632 47899999999986
Q ss_pred HHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEE
Q 011570 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi 271 (483)
+ .++++|++++++|| ...+ +++|.++|+++|+++|+|++|....... ...... + . ...+
T Consensus 163 ~-----~~~k~v~~~~~~~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~-g~~~~~--~-------~-~~di 221 (416)
T PRK00011 163 E-----HKPKLIIAGASAYS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAA-GVHPSP--V-------P-HADV 221 (416)
T ss_pred h-----cCCCEEEECCCcCC--CccC---HHHHHHHHHHcCCEEEEECcchhccccc-CccCCC--C-------C-CCcE
Confidence 4 26788888776654 4445 7888999999999999999985321111 111110 0 1 2246
Q ss_pred EEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCC---hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011570 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVS---SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 272 ~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 348 (483)
++.|+||++ +|.|.||++++++.+.+.++.....+..+ ...+.++...+. ....+.+++..++++++++++.+
T Consensus 222 ~~~S~~K~l--~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~ 297 (416)
T PRK00011 222 VTTTTHKTL--RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFK--EALEPEFKEYAQQVVKNAKALAE 297 (416)
T ss_pred EEecCCcCC--CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHH
Confidence 789999976 78999999996666776665544332221 112222111211 11223356677788899999999
Q ss_pred hhhcCCceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCC-CC---CCCCCEEEEEec-----cC
Q 011570 349 GLSQVGIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSS-FH---CPNPGWFRVCFA-----NM 418 (483)
Q Consensus 349 ~L~~~gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~-f~---~~~~~~iRis~~-----~~ 418 (483)
.|.+.|+++.+ ...++++|+.++... . ...++.+.| +++||.+..+.. +. +..+..+|++.. ..
T Consensus 298 ~L~~~g~~~~~~~~~~~~~~i~~~~~~----~-~~~~~~~~L-~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~ 371 (416)
T PRK00011 298 ALAERGFRVVSGGTDNHLVLVDLRSKG----L-TGKEAEAAL-EEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGF 371 (416)
T ss_pred HHHhCCCeeeecCCCCeEEEEeCcccC----C-CHHHHHHHH-HHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCc
Confidence 99988987754 122478999886321 0 112445544 567999974321 11 112456999652 24
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSFMLK 436 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l~~ 436 (483)
++++++.+++.|++++..
T Consensus 372 t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 372 KEAEMKEIAELIADVLDN 389 (416)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 689999999999998775
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-23 Score=208.09 Aligned_cols=298 Identities=15% Similarity=0.125 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
+.+|++.+|++++ .+..+++++| ++++..++.++.. +||.|++....|......+... |.+++.++.
T Consensus 92 ~~~le~~la~~~g---------~~~~~~~~SG-~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~-g~~~~~~~~ 160 (406)
T PRK13393 92 HVLLEAELADLHG---------KEAALLFTSG-YVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHS-RAEKRIFRH 160 (406)
T ss_pred HHHHHHHHHHHhC---------CCcEEEeCCc-HHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHc-CCeEEEeCC
Confidence 4667777777764 2334555555 5688888887665 7888777777888777777764 887766653
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|++.+++.+.... ..++++|++++++||+|.+.+ +++|.++|+++|+++|+||+|+...++. .. .
T Consensus 161 -------~d~~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~-~G-~ 226 (406)
T PRK13393 161 -------NDPADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGP-RG-G 226 (406)
T ss_pred -------CCHHHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHHHHHHHHcCCEEEEECCccccccCC-CC-C
Confidence 36777887775321 125788999999999999999 8888888999999999999997544543 21 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c---CCCChHHHHHHHHhcCChhHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F---GLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~---~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
.+..... . ..+.+|+++||||.+|++| ||+++ ++.+.+.+..... + ...++..+.++.+.++.. +
T Consensus 227 g~~~~~~-~---~~~~~i~~~tlsKa~g~~G---G~~~~-~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~---~ 295 (406)
T PRK13393 227 GIAEREG-L---ADRLTIIEGTLAKAFGVMG---GYITG-SAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHL---K 295 (406)
T ss_pred chhhhcC-C---CCCCeEEEEeCchhhcccC---ceeeC-CHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHH---h
Confidence 2222111 0 1234677899999999888 99988 5566666554332 1 223455566665555421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NP 408 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~ 408 (483)
+.. ..+.++.++++++.+.|++.|+++.++.++ ++.+.++.. ....++.+.|++++||.++++.....+ +.
T Consensus 296 ~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-i~~v~~~~~------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~ 367 (406)
T PRK13393 296 ASS-AERERHQDRVARLRARLDKAGIPHLPNPSH-IVPVMVGDP------VLCKQISDELLDRYGIYVQPINYPTVPRGT 367 (406)
T ss_pred hCH-HHHHHHHHHHHHHHHHHHHcCCCcCCCCCC-eEEEEeCCH------HHHHHHHHHHHHhCCEEEEeECCCCCCCCC
Confidence 111 223556778889999998888877766665 555554321 123467888887679999987644332 34
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 409 GWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 409 ~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+++||++.. .+++++++++++|++++++.
T Consensus 368 ~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 368 ERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 689999976 59999999999999987654
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=212.17 Aligned_cols=295 Identities=15% Similarity=0.125 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCC----eEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGD----AFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd----~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
+....+++.+.+.. ..+++++++|+++++..++.++ ..+|| +|++.+++|+++....... +....
T Consensus 73 ~~~~~la~~l~~~~------~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~-~~~~~ 145 (389)
T PRK01278 73 PEQERLAERLVENS------FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA-GGQEK 145 (389)
T ss_pred hHHHHHHHHHHhhC------CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhc-cCChh
Confidence 33445555554321 2469999999999999998876 45676 8999999999887665543 32211
Q ss_pred Eee-c-CCCCCcc----cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCc-CCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 170 PVV-C-DSSNDFK----VTMEALEAAYEKAQESNIRIKGVLITNPSNPLG-TFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 170 ~v~-~-~~~~~~~----~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
... . ....++. .|++.+++++.+ ++++|+++.++||+| .+++.+.+++|.++|++||+++|+||+|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 219 (389)
T PRK01278 146 YLEGFGPLVPGFDQVPFGDIEALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC 219 (389)
T ss_pred hcccCCCCCCCceEeCCCCHHHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 111 0 0011222 588999988853 788888887788998 78899999999999999999999999998
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIAT 320 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~ 320 (483)
++.+.+ ..+ ..... . . .++ +.||||.++ +|+|+||++++ +.+.+.+..... .+..++++|.++.+
T Consensus 220 g~g~~g-~~~-~~~~~-~-~---~pd----i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~aaa~a 286 (389)
T PRK01278 220 GMGRTG-KLF-AHEWA-G-V---TPD----IMAVAKGIG-GGFPLGACLAT-EEAAKGMTPGTHGSTYGGNPLAMAVGNA 286 (389)
T ss_pred CCCcCC-cce-eeccc-C-C---CCC----EEEEehhcc-CCcceEEEEEc-HHHHhccCCCCCCCCCCccHHHHHHHHH
Confidence 754443 221 21111 1 0 122 348999998 99999999994 555554433221 13467888888766
Q ss_pred hcCC---hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEe
Q 011570 321 MLSD---DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 321 ~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v 397 (483)
.++. .++ .++++++.+.++++.+.+.+.+.+. +....+ .|+++|++++. + ..+++..|+++ ||.+
T Consensus 287 ~l~~l~~~~~-~~~~~~~~~~l~~~l~~l~~~~~~~-~~~v~g-~G~~~~i~~~~--~------~~~~~~~l~~~-GV~~ 354 (389)
T PRK01278 287 VLDVILAPGF-LDNVQRMGLYLKQKLEGLVDRFPDV-IEEVRG-KGLLLGLKCVV--P------NRDLVQALRDE-GLLT 354 (389)
T ss_pred HHHHHhhhHH-HHHHHHHHHHHHHHHHHHHhhCCCc-eeeEec-ccEEEEEEEec--C------HHHHHHHHHHC-CeEE
Confidence 5542 222 3445555555555554443322111 222333 56788887753 1 23788888866 9999
Q ss_pred eCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 398 SPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 398 ~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.|+. .+++||+++. .+++++++++++|++++++
T Consensus 355 ~p~~------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 355 VGAG------DNVVRLLPPLIITEEEIDEALERLERAAES 388 (389)
T ss_pred eecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9873 4689999864 6999999999999998864
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-23 Score=206.30 Aligned_cols=290 Identities=13% Similarity=0.145 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------CCCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------DPGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
.++++.+|++++ ++++++++++|+++++..++.++. .+||+|++++++|..+...++.. |++++.
T Consensus 62 ~~~~~~la~~~g--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~-G~~~~~ 132 (373)
T TIGR03812 62 EEVVGSLGNLLH--------LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEML-GLELRY 132 (373)
T ss_pred HHHHHHHHHHhC--------CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHc-CCeEEE
Confidence 445555555554 567789999999999988876654 47799999999999998888876 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE- 249 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~- 249 (483)
++.++ ++.+|++++++++.+ ++..++++.|+||||.+.+ +++|.++|+++|+++|+|++|+.+...-.
T Consensus 133 v~~~~--~~~~d~~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~ 201 (373)
T TIGR03812 133 APLDE--DYTVDVKDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLK 201 (373)
T ss_pred EeeCC--CCCcCHHHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHh
Confidence 99864 568999999999865 4445555568999999988 77888888899999999999975421100
Q ss_pred C--CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcC----------CCChHHHHH
Q 011570 250 S--SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG----------LVSSQTQHL 317 (483)
Q Consensus 250 ~--~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~----------~~s~~~q~~ 317 (483)
. ....+ .+. ...-..+..|.+| |++++.|+|+++..++.+.+.+....++. ..+.....+
T Consensus 202 ~~~~~~~~-d~~------~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~ 273 (373)
T TIGR03812 202 KGYNPPPF-DFS------LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAA 273 (373)
T ss_pred cCCCCCCc-ccc------CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHH
Confidence 0 00000 000 0011233457789 66788899877654555555443222221 112233333
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCce-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+...+.... +...++..+++.+.++++.+.|+++|+. +.++.. .++.++++.. .++.+.|.+ +||.
T Consensus 274 ~~~~l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~v~~~~~~~---------~~v~~~L~~-~gi~ 340 (373)
T TIGR03812 274 TYAVIKYLG--REGYRKIVAECMENTRYLVEELKKIGFEPVIEPVL-NIVAFEVDDP---------EEVRKKLRD-RGWY 340 (373)
T ss_pred HHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCCCc-eEEEEEeCCH---------HHHHHHHHH-CCce
Confidence 334443211 2334566778888899999999988865 444444 4676776531 256666664 5999
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
++++. .++++|++++. .++++++.++++|++
T Consensus 341 v~~~~-----~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 341 VSVTR-----CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred eccCC-----CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 97653 25689999976 599999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=208.68 Aligned_cols=298 Identities=14% Similarity=0.146 Sum_probs=202.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC----CCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD----PGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
..++.+.+.+.+.+..| .+++++++++|+++++..++.++.+ +||+|++.++.|..+...++.. |.+++.+
T Consensus 57 ~~~~~~~~~~~la~~~g----~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~-g~~~~~v 131 (371)
T PRK13520 57 TAKLEEEAVEMLGELLH----LPDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADML-GVELRRA 131 (371)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHc-CceEEEe
Confidence 34433444444444433 4566889999999999998877654 5799999999999988888775 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
|.++ ++.+|++.|++++.+ +++.|++++++||||.+.+ +++|.++|+++|+++++|++|+.+...-...
T Consensus 132 ~~~~--~~~~d~~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~ 200 (371)
T PRK13520 132 PLDD--DYRVDVKAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKIALENGIFLHVDAAFGGFVIPFLDD 200 (371)
T ss_pred cCCC--CCcCCHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHHcCCCEEEEecchhHHHHhhcC
Confidence 8764 457899999999975 5677888889999999999 7888888899999999999998643211011
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcC----------CCChHHHHHHHHh
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG----------LVSSQTQHLIATM 321 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~----------~~s~~~q~~~~~~ 321 (483)
. ...... ......+..|.+| |+++|.++|+++..++.+.+.+....++. +.+.....++...
T Consensus 201 ~-~~~~~~------~~~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a 272 (371)
T PRK13520 201 P-PNFDFS------LPGVDSITIDPHK-MGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAV 272 (371)
T ss_pred C-CCcccc------CCCCceEEECCcc-ccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHH
Confidence 0 000110 0122334457788 55688999988876665555443222221 1122333334344
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCce-eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPG 400 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg 400 (483)
+..-. ....++..++..++++++.+.|.+.|++ +..+..+ ++.++++. ..++...|.+ +||.+.++
T Consensus 273 l~~l~--~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-~v~~~~~~---------~~~v~~~L~~-~gi~v~~~ 339 (371)
T PRK13520 273 MKYLG--REGYRKVVERCMENTRWLAEELKERGFEPVIEPVLN-IVAFDDPN---------PDEVREKLRE-RGWRVSVT 339 (371)
T ss_pred Hhhhc--HhHHHHHHHHHHHHHHHHHHHHHhCCCEEecCCCce-EEEEecCC---------HHHHHHHHHH-CCceeccC
Confidence 43211 1224556677788889999999888987 5555554 66677652 2266677765 59998875
Q ss_pred CCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 401 SSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
. .++++|++++. .++++++.+++.|+++++
T Consensus 340 ~-----~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 340 R-----CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred C-----CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 3 24679999865 599999999999998764
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-23 Score=210.25 Aligned_cols=294 Identities=17% Similarity=0.212 Sum_probs=202.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---CCCCeEEEeCCCCcChHHH---HhhhcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVPTPYYPGFDRD---LRWRTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~P~y~~~~~~---~~~~~G~~~~ 169 (483)
..++|+.++++++ +++++|++|+|+++++..++.++. .+||+|++....|+.+... ++. .|.+++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~-~G~~v~ 114 (379)
T TIGR03402 44 VEEAREQVAKLLG--------AEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEK-QGYKVT 114 (379)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHH-cCCEEE
Confidence 3566777777765 568899999999999999988764 4578999999888766543 333 499999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ ++.+|++.+++++.+ +++++++++++||||.+++ +++|.++|+++|+++++|+++.. +.
T Consensus 115 ~v~~~~--~g~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~---~~~I~~l~~~~g~~vivD~~~~~---g~- 179 (379)
T TIGR03402 115 YLPVDE--EGRLDLEELRAAITD------DTALVSVMWANNETGTIFP---IEEIGEIAKERGALFHTDAVQAV---GK- 179 (379)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEEcccCCeeeccc---HHHHHHHHHHcCCEEEEECcccc---cc-
Confidence 998864 347899999998863 7899999999999999999 56788899999999999999963 22
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH-HH-----HHhhhcCCCChHHHHHHHHhcC
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS-CA-----RKMSSFGLVSSQTQHLIATMLS 323 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~-~~-----~~~~~~~~~s~~~q~~~~~~l~ 323 (483)
.+ .++.. .+..+++.|.+|.+|.+| +|+++..++.... .. ......+..+.+...++.++++
T Consensus 180 ~~-~~~~~---------~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~ 247 (379)
T TIGR03402 180 IP-IDLKE---------MNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAE 247 (379)
T ss_pred cc-cCccc---------CCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcCCCCccHHHHHHHHHHHH
Confidence 11 22221 133466778889777666 7888775432100 00 0001123334444444444442
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-CceeecCC-----ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGCLKSN-----AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~~~~~-----~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+..+++++..+++++.++++.+.|.+ + ++.+..+. +...+|++... ..++...| +++||.
T Consensus 248 ---~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~~gI~ 314 (379)
T TIGR03402 248 ---LATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIE---------GEAILLLL-DMEGIC 314 (379)
T ss_pred ---HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCC---------HHHHHHhh-ccCCEE
Confidence 23344566667778888888888875 4 66665432 23444543321 12555544 567999
Q ss_pred eeCCCCCCCCC-----------------CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 397 VSPGSSFHCPN-----------------PGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 397 v~pg~~f~~~~-----------------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+++|..|.... .+.+|+|++. .++++++++++.|++++++.+
T Consensus 315 v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~ 374 (379)
T TIGR03402 315 ASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLR 374 (379)
T ss_pred EEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998775431 3689999987 699999999999999887754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=206.38 Aligned_cols=218 Identities=19% Similarity=0.185 Sum_probs=156.2
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR--- 163 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~--- 163 (483)
..+|+.+. ..+|++++|++.+ .+++++|+|+++++..++.+++++||+|+++.|+|+.....+...
T Consensus 45 Y~R~~~p~-~~~le~~lA~l~g----------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~ 113 (382)
T TIGR02080 45 YSRSGNPT-RDLLQQALAELEG----------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKK 113 (382)
T ss_pred ccCCCCch-HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 34565543 5788888988764 368999999999999999999999999999999998765544332
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|.++..++ . .|++.+++++++ ++|+|++++|+||||.+++ +++|+++|+++|++||+|++|..
T Consensus 114 ~~~~v~~~d---~----~d~~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~ 177 (382)
T TIGR02080 114 GCFRVLFVD---Q----GDEQALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLS 177 (382)
T ss_pred cCeEEEEEC---C----CCHHHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 134554442 1 378889988864 7899999999999999999 67788888899999999999975
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc-C-CCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF-G-LVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~-~-~~s~~~q~~~~~ 320 (483)
..+. . ++ .+ ...++++|+||.++ .++++.|++++.++.+.+.+...... + .++++....+..
T Consensus 178 ~~~~--~---pl-~~---------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr 242 (382)
T TIGR02080 178 PALQ--N---PL-AL---------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242 (382)
T ss_pred cccC--C---ch-hh---------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence 4221 1 11 11 22378899999885 57899999988667676666554444 2 345554443322
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
-++ . +..+.++..++...+.+.|+.+
T Consensus 243 ~l~---t----l~~R~~~~~~na~~~a~~L~~~ 268 (382)
T TIGR02080 243 GLR---T----LVARMRLQQRNAQAIVEYLQTQ 268 (382)
T ss_pred ccc---h----HHHHHHHHHHHHHHHHHHHHhC
Confidence 222 2 3333555567777788888776
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=209.08 Aligned_cols=296 Identities=16% Similarity=0.184 Sum_probs=202.0
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEE
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLV 169 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~ 169 (483)
.+..++|+.++++++. -.+++|++|+|+++++..++.+++++||+|+++.++|+.+... ++. .|.+++
T Consensus 44 ~~~~~~~~~la~~~~~-------~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~ 115 (376)
T TIGR01977 44 REVEETRQLLAKLFNA-------PSSAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQ-IGVEIT 115 (376)
T ss_pred HHHHHHHHHHHHHhCc-------CCCCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHH-cCcEEE
Confidence 3467889999998862 1345899999999999999999999999999999999876543 333 399999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ ++.+|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++.. .
T Consensus 116 ~v~~~~--~~~~d~~~l~~~~~~------~~~~v~~~~~~n~tG~~~~---~~~i~~l~~~~~~~livD~a~~~g---~- 180 (376)
T TIGR01977 116 IVKCDN--EGLISPERIKRAIKT------NTKLIVVSHASNVTGTILP---IEEIGELAQENGIFFILDAAQTAG---V- 180 (376)
T ss_pred EEecCC--CCCcCHHHHHHhcCC------CCeEEEEECCCCCccccCC---HHHHHHHHHHcCCEEEEEhhhccC---c-
Confidence 998764 457899999998853 7899999999999999999 667888899999999999999732 2
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH----h-h-------------hcCCCC
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK----M-S-------------SFGLVS 311 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~----~-~-------------~~~~~s 311 (483)
.+ ..+. .....+++.|++|.++.|. .+|.++..++.....+.. . . ..+..+
T Consensus 181 ~~-~~~~---------~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~ 249 (376)
T TIGR01977 181 IP-IDMT---------ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLN 249 (376)
T ss_pred cC-CCch---------hcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCC
Confidence 11 1211 1234577889999875332 367666644431111000 0 0 012223
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC----ceEEEeeecCchhhccChHHHHHHH
Q 011570 312 SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN----AGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+...++.+.++. +.+.-.+..+++.++..+++.+.|.+. |+++..+. .+..+++.++.. + ..++.
T Consensus 250 ~~~~~a~~~al~~--~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~------~~~~~ 320 (376)
T TIGR01977 250 TPGIAGLNAGIKF--IEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI-D------SEEVA 320 (376)
T ss_pred HHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC-C------HHHHH
Confidence 3333333333321 111112445566777778888888865 67766431 234677777532 1 22566
Q ss_pred HHHHHhcCeEeeCCCCCCC--------CCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHC--------PNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~--------~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
..|.+++||.+..|..+.. ...+.+|++++. .++++++.++++|++
T Consensus 321 ~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 321 DILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 7777666999999876542 245789999976 599999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=205.11 Aligned_cols=211 Identities=16% Similarity=0.206 Sum_probs=152.7
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEE
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQL 168 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~ 168 (483)
..+..+|++++|++++ .+++++++|+++++..++.+++++||+|+++.|.|+.+.... +. .|+++
T Consensus 63 ~p~~~~Le~~iA~~~g----------~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~-~G~~v 131 (400)
T PRK06234 63 NPTSTEVENKLALLEG----------GEAAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTR-YGVEV 131 (400)
T ss_pred CccHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhh-CCeEE
Confidence 3468999999999986 246788888899999999999999999999999998765543 44 49998
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCcc
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVF 246 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~ 246 (483)
+.++.. |++++++++.+ ++++|++++|+||||.+.+ +++|.++|+++ |+++|+||+|....+
T Consensus 132 ~~vd~~-------d~e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~ 195 (400)
T PRK06234 132 TFVDTS-------NLEEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYI 195 (400)
T ss_pred EEECCC-------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhc
Confidence 888742 78899998864 7899999999999999999 77778888886 999999999976433
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHh--hh-c-CCCChHHHHHHHHh
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKM--SS-F-GLVSSQTQHLIATM 321 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~--~~-~-~~~s~~~q~~~~~~ 321 (483)
.. ++ . .+..+++.|+||.++.+|.|+ ||++++ +.+.+.++.. .. + ..+++.....+..-
T Consensus 196 ~~-----~l-~---------~g~Divv~S~sK~l~g~g~~~gG~v~~~-~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~ 259 (400)
T PRK06234 196 QR-----PL-Q---------LGADVVVHSATKYLNGHGDVIAGFVVGK-EEFINQVKLFGIKDMTGSVIGPFEAFLIIRG 259 (400)
T ss_pred CC-----ch-h---------hCCcEEEeeccccccCCCCceeEEEEec-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 21 11 1 134588999999999889775 899985 4555554432 21 2 22444444444344
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++. +..+.++..++...+.+.|+++
T Consensus 260 l~t-------l~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 260 MKT-------LQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred cCc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 433 2233344456666777777765
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=203.73 Aligned_cols=211 Identities=19% Similarity=0.201 Sum_probs=146.6
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCc----ChHHHHhhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP----GFDRDLRWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~----~~~~~~~~~~G~~~~~ 170 (483)
...+|++++|++.+ . ...+++++| ++++..++.+++++||+|+++.|.|+ .+...++.. |+++..
T Consensus 46 ~~~~L~~~lA~l~g--------~-~~~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~-G~~v~~ 114 (376)
T PRK06460 46 TVLELTKKIVELEN--------A-EMGVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNW-GVNVDA 114 (376)
T ss_pred cHHHHHHHHHHHhC--------C-CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhh-CcEEEE
Confidence 57899999999986 2 235555554 68999999999999999999987654 344555654 999888
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.++ .+.+++.+. +++++|++++||||||.+++ +++|+++|+++|++||+||+|... +..
T Consensus 115 ~~~~~-------~~~l~~~~~------~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~g~~vivDea~~~~-~~~-- 175 (376)
T PRK06460 115 SNPGS-------DNIIEKAKS------KRYDVVFVENITNPLLRVVD---ITELSKVCKENGSILIVDATFSTP-INQ-- 175 (376)
T ss_pred ECCCC-------HHHHHHhcC------CCceEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcCcc-ccC--
Confidence 77542 223333322 37899999999999999999 456788888999999999999742 111
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
.+ + ..+.+++++|+||.++ ..+.|+||+++ ++.+.+.+......+..+... ..+..++...++
T Consensus 176 --~~---l-------~~~~divv~S~sK~l~G~~~~~~G~~~~-~~~l~~~l~~~~~~~g~~~~~-~~a~~~l~~~~~-- 239 (376)
T PRK06460 176 --KP---L-------ELGADIVVHSASKFLAGHNDVIAGLAAG-YGKLLNVIDQMRRTLGTSLDP-HAAYLTLRGIKT-- 239 (376)
T ss_pred --Ch---h-------hcCCCEEEeecceeccCCCCceEEEEec-CHHHHHHHHHHHHhcCCCCCH-HHHHHHHhchhh--
Confidence 11 1 1245688999999985 22478999998 455666665544333232221 233333444333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++.+.+++.++++++.+.|+++
T Consensus 240 --l~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 240 --LKIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 5666777888999999999876
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-22 Score=199.33 Aligned_cols=315 Identities=14% Similarity=0.147 Sum_probs=201.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
.|+...++.+|++++|++++ ..+.+++++|.++.+ .++.+++++||.|+++++.|..+...+... +.++
T Consensus 38 ~yg~~~~~~~LE~~lA~~~g---------~e~al~~~sG~~a~~-~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~-~~~~ 106 (392)
T PLN03227 38 FYGTIDAHLELEQCMAEFLG---------TESAILYSDGASTTS-STVAAFAKRGDLLVVDRGVNEALLVGVSLS-RANV 106 (392)
T ss_pred ccCChHHHHHHHHHHHHHhC---------CCcEEEecCcHHHHH-HHHHHhCCCCCEEEEeccccHHHHHHHHHc-CCeE
Confidence 47777788999999999987 347788888877777 666778999999999999999988877654 7777
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHh--------cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQE--------SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~--------~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
+.++.. |++.+++.++.... ..+++++|++.+|.||+|.+.+ +++|.++|++||+++|+||+
T Consensus 107 ~~~~~~-------d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i~~l~~~~g~~livDe~ 176 (392)
T PLN03227 107 RWFRHN-------DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKELVALKEEFHYRLILDES 176 (392)
T ss_pred EEeCCC-------CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHHHHHHHHcCCEEEEECc
Confidence 777643 34445444433221 1236788899999999999999 77889999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---hcCC-CChHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---SFGL-VSSQTQH 316 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---~~~~-~s~~~q~ 316 (483)
|....++. .. ........ .. +..+..+++.|+||.+|.. .|++++ ++.+.+.++... .++. .++..+.
T Consensus 177 ~~~g~~g~-~G-~g~~~~~g-~~-p~~~~Div~~slsk~~g~~---gg~v~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~ 248 (392)
T PLN03227 177 FSFGTLGK-SG-RGSLEHAG-LK-PMVHAEIVTFSLENAFGSV---GGMTVG-SEEVVDHQRLSGSGYCFSASAPPFLAK 248 (392)
T ss_pred ccccccCC-CC-CcHHHHcC-CC-CCCCceEEEeechhhhhcc---CcEEec-CHHHHHHHHHhCcCccccCCCCHHHHH
Confidence 97322332 11 12333211 00 0124478888999987634 488887 455555443322 2322 2344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee----------ecCCceEEEeeecCchhhccCh---HHHH
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC----------LKSNAGLFLWMDLHHLLKEQTY---EAEM 383 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~----------~~~~~g~f~~~~l~~~~~~~~~---~~~~ 383 (483)
++...+.... + .++..++++++.+++.+.|++.+++. .....++++.+.+.+....... ....
T Consensus 249 aa~~al~~~~--~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ 324 (392)
T PLN03227 249 ADATATAGEL--A--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILD 324 (392)
T ss_pred HHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHH
Confidence 4443332210 1 23445667778888888887544321 1112345666777542111100 0112
Q ss_pred HHHHHHHHhcCeEeeCCCC-----CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 384 ALWRVIINEVKLNVSPGSS-----FHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~-----f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++.+++ +||.+.+... +..-.+..+|+++.. .++|++++++++|++++++.
T Consensus 325 ~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 325 QIAHHSLS-EGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHH-CCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 56666664 5998865211 111124679999966 69999999999999998764
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-23 Score=211.57 Aligned_cols=291 Identities=16% Similarity=0.216 Sum_probs=198.9
Q ss_pred HHHHHHHHHHH---HhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhh---cCcEEE
Q 011570 97 PEFRNAVAKFM---GKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWR---TGVQLV 169 (483)
Q Consensus 97 ~~Lr~~ia~~~---~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~ 169 (483)
+.++++++++. .+.+| ++++++.+|+|+++++..++.++. .+||+|+++.|.|+.+...+... .|.+++
T Consensus 108 ~g~~~~~~e~~~~la~l~g----~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~ 183 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTG----MDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVV 183 (447)
T ss_pred hHHHHHHHHHHHHHHHHhC----CCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEE
Confidence 44666666443 66666 567799999999999999988874 79999999999999888776541 489999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEE--ccccccCccC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVC--DEIYAATVFT 247 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~--Deay~~~~~~ 247 (483)
.+++++ + .+|++++++++.+ ++++|++++| ||||.+.+ +++|.++|+++|+++|+ |.+.... +.
T Consensus 184 ~v~~~~--~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~-~~ 249 (447)
T PRK00451 184 EVPYED--G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLGL-LK 249 (447)
T ss_pred EecCCC--C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhcc-CC
Confidence 999865 3 7899999998853 7899999999 89999987 88889999999999988 4432211 11
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEe---cCccccCCCCceEEEEEecChHHHHHH-----------------------
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVY---SLSKDMGFPGFRVGIIYSYNDQVVSCA----------------------- 301 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~---S~SK~~g~~GlRiG~li~~~~~l~~~~----------------------- 301 (483)
... ..+..+++. +|||.+++.|+++||+++++ .+.+.+
T Consensus 250 ------~~~---------~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 313 (447)
T PRK00451 250 ------PPG---------EYGADIVVGEGQPLGIPLSFGGPYLGFFATRK-KLVRQMPGRLVGETVDADGKRGFVLTLQA 313 (447)
T ss_pred ------Ccc---------cCCCCEEEECCCcCCCCCCCCCCCchHHHhhH-HHHhhCCCCEeeeecccCCCeeeEeeccc
Confidence 000 123334444 78888888999999999854 443331
Q ss_pred -----HHhhhcCCCC--hHHH-HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEe--eec
Q 011570 302 -----RKMSSFGLVS--SQTQ-HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLW--MDL 370 (483)
Q Consensus 302 -----~~~~~~~~~s--~~~q-~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~--~~l 370 (483)
+........+ ...+ .+++..+... .+..+++..+++.++++++.+.|.++ |+++. .+++|.+ +++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~ 389 (447)
T PRK00451 314 REQHIRREKATSNICTNQALNALAAAIYMSLL--GPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRL 389 (447)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEec
Confidence 0011111111 1222 2222122110 12335777788999999999999988 67775 3445544 454
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeE-eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLN-VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~-v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+. ...+++++|+++ ||. ..++..|+....+++|+++.. .++++++++++.|++++
T Consensus 390 ~~--------~~~~~~~~L~~~-gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 390 PK--------PAEEVNEALLEK-GILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred CC--------CHHHHHHHHHhc-CCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 31 123788888865 665 345555554445789999975 59999999999998754
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-22 Score=201.02 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=161.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR--- 163 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~--- 163 (483)
..+|+++ ....|++++|++.+ .+++++++|+++++..++.++++|||+|+++.|+|+.....+...
T Consensus 46 Y~R~~~p-t~~~L~~~lA~l~g----------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~ 114 (386)
T PRK08045 46 YSRRGNP-TRDVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR 114 (386)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 3466655 36889999999865 246999999999999999999999999999999998655443322
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|.++..++ ..|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..
T Consensus 115 ~gi~v~~vd-------~~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~ 178 (386)
T PRK08045 115 GCYRVLFVD-------QGDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLS 178 (386)
T ss_pred CCeEEEEeC-------CCCHHHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 244655543 1578889888753 7899999999999999999 67778888899999999999975
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~ 320 (483)
.... .++ .+ ...++++|+||.++ .++++.|++++.++.+.+.+...... ...+++.+..+..
T Consensus 179 ~~~~-----~pl-~~---------gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~r 243 (386)
T PRK08045 179 PALQ-----NPL-AL---------GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLR 243 (386)
T ss_pred cccC-----Cch-hh---------CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 3221 121 12 22378999999985 56788999988666665555433322 3367777777777
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.++. +..++++..+++..+.+.|+++
T Consensus 244 gl~t-------l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 244 GLRT-------LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred hhcc-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 7664 4555666777888888888876
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=201.45 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=189.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---c
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---T 164 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~ 164 (483)
.+|+++. ..+|++.+|++++ ..+.|++ ++++.++..++.+++++||+|+++.|.|+.....+... .
T Consensus 56 ~r~~~pt-~~~Le~~lA~l~G---------~~~al~~-~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~ 124 (386)
T PRK06767 56 SRLGNPT-VKLFEERMAVLEG---------GEEALAF-GSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKF 124 (386)
T ss_pred cCCCCcc-hHHHHHHHHHHhC---------CCcEEEE-CCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhc
Confidence 4565543 6899999999976 2344555 45567899999999999999999999998766554332 2
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|+++..++. .|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 125 gi~~~~~~~-------~d~~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~ 188 (386)
T PRK06767 125 MITHSFCDM-------ETEADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSP 188 (386)
T ss_pred CeEEEEeCC-------CCHHHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 555544432 378888888753 7899999999999999999 778888888999999999999643
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHh
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATM 321 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~ 321 (483)
.+. . ++ . ....+++.|+||.++.+|.|+ ||++++++.+.+....... . ...+++.+.++...
T Consensus 189 ~~~--~---pl-~---------~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~ 253 (386)
T PRK06767 189 YLQ--R---PL-E---------LGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRG 253 (386)
T ss_pred ccC--C---ch-h---------cCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence 222 1 11 1 123477889999998889886 8999865555444333322 2 22455544444333
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ccee-ec-----------CCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGC-LK-----------SNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~-~~-----------~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
+.. +..+.++.+++...+.+.|+++ +++. .. ..|| .+.++++.. .++...|.+.
T Consensus 254 L~t-------l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg-~vsf~l~~~-----~~~~~~f~~~ 320 (386)
T PRK06767 254 LKT-------LAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGG-VISFSIKGG-----KEETQAFIND 320 (386)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCc-eEEEEEcCC-----HHHHHHHHHh
Confidence 432 2344556678888899999987 6653 32 2234 555666531 1223356665
Q ss_pred HHHhcCeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|- ..++.+.-|..... -.++.||||+|. |+.+.+++.|.+++.
T Consensus 321 l~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl---E~~~dl~~dl~~al~ 384 (386)
T PRK06767 321 LH-FITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL---ESWEDIVSDLEQALK 384 (386)
T ss_pred CC-ccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 53 45666555532110 014679999984 456777777777665
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-22 Score=197.97 Aligned_cols=217 Identities=16% Similarity=0.162 Sum_probs=157.5
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hc
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RT 164 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~ 164 (483)
.+|+.+ ....|++++|++.+ .+++++|+|+++++..++.+++++||+|+++.|+|+.....+.. ..
T Consensus 48 ~R~~np-t~~~Le~~lA~leg----------~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~ 116 (388)
T PRK08861 48 TRSGNP-NRGLLEQTLSELES----------GKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKG 116 (388)
T ss_pred cCCCCc-hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence 345544 36889999999865 48999999999999999999999999999999999864443321 13
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|++++.++. .|++.+++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 117 gi~v~~vd~-------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~ 180 (388)
T PRK08861 117 DFKVQFVDQ-------SDAAALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTP 180 (388)
T ss_pred CeEEEEECC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 677777652 478889888753 7899999999999999999 667788888999999999999754
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhhc-C-CCChHHHHHHHHh
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSSF-G-LVSSQTQHLIATM 321 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~~-~-~~s~~~q~~~~~~ 321 (483)
.+.. +. .+ +..+++.|++|.++- .++..|++++.++.+.+.+...... + .++++....+..-
T Consensus 181 ~~~~--pl----~~---------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg 245 (388)
T PRK08861 181 VLQK--PL----EL---------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRG 245 (388)
T ss_pred ccCC--Cc----cc---------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhc
Confidence 3322 11 11 334788999999864 3578899988666666655544433 2 3455555545444
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++. +.-+.++..++...+.+.|+.+
T Consensus 246 l~T-------l~lR~~~~~~~a~~~a~~L~~~ 270 (388)
T PRK08861 246 IRT-------LGARMRVHEESAQQILAYLQTQ 270 (388)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 544 2334445566667778888776
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=203.59 Aligned_cols=275 Identities=15% Similarity=0.174 Sum_probs=186.8
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--------CCCCeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCCCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--------DPGDAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDSSND 178 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~~~~ 178 (483)
.+.+++++++++++..++.... ...+.|+..+-+|.+.........|. +++.++.
T Consensus 97 ~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 171 (403)
T PRK05093 97 AERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF----- 171 (403)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----
Confidence 3699999999999999987641 12356888887776643322111111 1222221
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC--CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL--DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
-|++.+++.+.+ ++++|+++ |.||+|.++ +.+.+++|+++|++||+++|+||+|.++.+.+ . +.+..
T Consensus 172 --~d~~~l~~~l~~------~~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~-~~~~~ 240 (403)
T PRK05093 172 --NDLAAVKAVIDD------HTCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-D-LFAYM 240 (403)
T ss_pred --CCHHHHHHHhcC------CeEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-c-chhhh
Confidence 178888887752 67776666 888888775 88999999999999999999999999865554 3 22221
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-h-hcCCCChHHHHHHHHhcCChhHHHHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-S-SFGLVSSQTQHLIATMLSDDQFVEKFIAE 334 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (483)
.... .++ +.||||+++ +|+|+||++++ +.+.+.+... . .....+++.|.++.+.|+.. . ..+
T Consensus 241 ~~~~-----~pd----i~s~sK~l~-~G~rig~vv~~-~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~---~--~~~ 304 (403)
T PRK05093 241 HYGV-----TPD----ILTSAKALG-GGFPIGAMLTT-AEIASHFKVGTHGSTYGGNPLACAVAEAVFDII---N--TPE 304 (403)
T ss_pred hcCC-----CCC----EEEeccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH---h--hcc
Confidence 1110 122 459999999 99999999994 5555554331 1 12346788888887765321 1 123
Q ss_pred HHHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 335 SAKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 335 ~~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
..+.++++++++.+.|++++ +....+.+|+++|+.++.... ....+++..+++ .||.+.|+ +.++
T Consensus 305 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~----~~~~~~~~~l~~-~Gv~v~~~------g~~~ 373 (403)
T PRK05093 305 VLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYK----GRARDFLNAAAE-EGVMVLVA------GPDV 373 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcch----hHHHHHHHHHHH-CCeEEecC------CCCE
Confidence 34667778888888887753 223445668999999864211 123478888886 49999874 2468
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+|++++. .+++++++++++|++++.+
T Consensus 374 lRl~~~~~~~~~~i~~~~~~l~~~l~~ 400 (403)
T PRK05093 374 LRFAPSLVIEEADIDEGLARFEKAVAK 400 (403)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998776 4999999999999998864
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=201.07 Aligned_cols=210 Identities=16% Similarity=0.222 Sum_probs=150.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
..+|++.+|++++ .+++++|+|+++++..++.+++++||+|+++.+.|++.... +... |++++.+
T Consensus 63 ~~~le~~la~l~g----------~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~-G~~v~~v 131 (390)
T PRK08133 63 VTMFQERLAALEG----------AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARF-GIETTFV 131 (390)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHc-CcEEEEE
Confidence 5688888888865 35789999999999999999999999999999999775543 3444 9999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|....+. .
T Consensus 132 d~~-------d~~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~--~- 192 (390)
T PRK08133 132 DLT-------DLDAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ--Q- 192 (390)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC--C-
Confidence 753 67888888753 7899999999999999998 788899999999999999998643221 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEecChHHHHHHH-HhhhcC-CCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYSYNDQVVSCAR-KMSSFG-LVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~~~~~l~~~~~-~~~~~~-~~s~~~q~~~~~~l~~~~~~ 328 (483)
++ .+ ...+++.|+||.++.+|.++| |++++ +.+.+.+. .....+ .+++..+.. ++...+.
T Consensus 193 --pl-~~---------g~Divv~S~sK~~~g~g~~~GG~vv~~-~~~~~~~~~~~~~~g~~~~~~~a~~---~l~gl~t- 255 (390)
T PRK08133 193 --PL-KL---------GADVVIHSATKYLDGQGRVLGGAVVGS-KELMEEVFGFLRTAGPTLSPFNAWV---FLKGLET- 255 (390)
T ss_pred --ch-hh---------CCcEEEeecceeecCCcceEeEEEEcC-HHHHHHHHHHHHHhCCCCCHHHHHH---HHcccch-
Confidence 11 11 234778999999988899985 56664 44433332 233332 233333322 3332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV-GI 355 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~-gi 355 (483)
+..+.++..+++..+.+.|+++ ++
T Consensus 256 ---l~~R~~~~~~~a~~la~~L~~~p~v 280 (390)
T PRK08133 256 ---LSLRMEAHSANALALAEWLEAHPGV 280 (390)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 3444555567778888888876 44
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=200.86 Aligned_cols=295 Identities=14% Similarity=0.148 Sum_probs=193.3
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCC-CeEEEeCCCCcChHHHHhhhcCcEEE---
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPG-DAFLVPTPYYPGFDRDLRWRTGVQLV--- 169 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~--- 169 (483)
...++++++++++.+..+ .+.+++++++++++..++.... .+| +.|++.+++|++.........+....
T Consensus 68 ~~~~~~~~la~~l~~~~~------~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~ 141 (377)
T PRK02936 68 FTNSLQEEVASLLAENSA------GDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEG 141 (377)
T ss_pred cCCHHHHHHHHHHHhcCC------CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCcccccc
Confidence 357899999999986432 3589999999999999998542 244 67999999887543222111132110
Q ss_pred EeecCCCCCcc--cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 170 PVVCDSSNDFK--VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 170 ~v~~~~~~~~~--~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
..|+..+..+. -|++.+++.+.+ ++++|++..+++++|.+ .+.+.+++|.++|++||+++|+||+|.++.+
T Consensus 142 ~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~ 215 (377)
T PRK02936 142 FGPLLPGFTHVPFNDIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGR 215 (377)
T ss_pred CCCCCCCceEeCCCCHHHHHHhccC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 01111100000 168888887753 68888888889999987 5789999999999999999999999987544
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSD 324 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~ 324 (483)
.+ . +.+.... . + .++ + .||||.++ +|+|+||+++ ++.+.+.+.... ..+..++++|.++.++++.
T Consensus 216 ~g-~-~~~~~~~-~-~---~~d-i---~t~sK~l~-~G~~ig~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~ 282 (377)
T PRK02936 216 TG-T-LFAYEQF-G-L---DPD-I---VTVAKGLG-NGIPVGAMIG-KKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQV 282 (377)
T ss_pred Cc-h-hhHHHhh-C-C---CCc-E---EEEccccc-CCCccEEEEE-cHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 43 2 2222222 1 0 122 2 37999999 9999999999 466666553322 1234688899888888754
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceee--cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCL--KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPG 400 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~--~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg 400 (483)
... ....+.++++.+++.+.|.+. ++... ....|+++|++++.. ...+...+ .++||.+.|+
T Consensus 283 ~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~--------~~~~~~~l-~~~gv~v~~~ 348 (377)
T PRK02936 283 IKQ-----PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEE--------VAPVIEQL-REEGLLVLSA 348 (377)
T ss_pred HHh-----ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecch--------HHHHHHHH-HHCCeEEecC
Confidence 311 122344555566666666542 22211 123468999998742 22455555 4679999874
Q ss_pred CCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 401 SSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
. .+++||++.. .+++++++++++|++++
T Consensus 349 g------~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 349 G------PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred C------CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 2 4689999733 69999999999998753
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=196.39 Aligned_cols=209 Identities=19% Similarity=0.170 Sum_probs=150.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh----HHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF----DRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~----~~~~~~~~G~~~~~v 171 (483)
...|++.+|++.+ .++++++++ +++++.+++.+++++||+|+++.|+|+.. ...+.. .|.+++.+
T Consensus 62 ~~~Le~~lA~l~g---------~~~~v~~~s-G~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~-~g~~v~~v 130 (405)
T PRK08776 62 RDLLGEALAELEG---------GAGGVITAT-GMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKK-GHFALITA 130 (405)
T ss_pred HHHHHHHHHHHhC---------CCceEEEcC-HHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHh-cCcEEEEE
Confidence 4677788887754 234555555 57999999999999999999999999873 333343 38888887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|.....
T Consensus 131 ~~-------~d~~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~----- 189 (405)
T PRK08776 131 DL-------TDPRSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL----- 189 (405)
T ss_pred CC-------CCHHHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 64 368888888753 7899999999999999976 88889999999999999999974211
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~ 328 (483)
+.++ .+ ...+++.|.+|.++.+ ++..|++++.++.+.+.+...... ..++++.+.++..-++
T Consensus 190 ~~pl-~~---------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~----- 254 (405)
T PRK08776 190 QKPL-EF---------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLR----- 254 (405)
T ss_pred CCcc-cc---------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhC-----
Confidence 1121 12 2237788999999755 588999988667676655443322 2345555555543332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+++.+.++..++...+.+.|+++
T Consensus 255 --tl~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 255 --TLDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred --cHHHHHHHHHHHHHHHHHHHHcC
Confidence 24556667778888888888876
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=197.47 Aligned_cols=208 Identities=15% Similarity=0.216 Sum_probs=149.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
..+|++.+|++.+ .+..++++++++++..++.+++++||+|+++.|+|+..... +.. .|++++.+
T Consensus 66 ~~~le~~lA~l~g----------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~-~Gi~v~~v 134 (398)
T PRK08249 66 VQAFEEKVRILEG----------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPR-MGVDVTLC 134 (398)
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhh-CCeEEEEc
Confidence 5788999999876 24567777778999999999999999999999999875443 334 38887766
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+.... . .
T Consensus 135 d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~-~- 195 (398)
T PRK08249 135 ET-------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN-Q-N- 195 (398)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc-C-C-
Confidence 52 578999988864 7899999999999999999 77788889999999999999985422 1 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~ 328 (483)
+. .+ ...++++|+||.+|.+|.++ ||+++ ++.+.+.+...... ..+++..+..+..-+..
T Consensus 196 --~l-~~---------~~Divv~S~sK~l~g~~~~~gG~vv~-~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~t---- 258 (398)
T PRK08249 196 --PL-AL---------GADLVIHSATKFLSGHADALGGVVCG-SKELMEQVYHYREINGATMDPMSAYLILRGMKT---- 258 (398)
T ss_pred --ch-hh---------CCCEEeccCceecCCCCCceEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcch----
Confidence 11 11 22367799999998677776 56665 56666655544433 23444444444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..+++..+.+.|+++
T Consensus 259 ---L~~R~~~~~~na~~la~~L~~~ 280 (398)
T PRK08249 259 ---LKLRVRQQQESAMALAKYLQTH 280 (398)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 2344455567777788888875
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=198.37 Aligned_cols=283 Identities=15% Similarity=0.200 Sum_probs=189.0
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCC---------------eEEEeCCCCcCh---
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD---------------AFLVPTPYYPGF--- 156 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd---------------~Vlv~~P~y~~~--- 156 (483)
+.+++++++++++.+.+| .+++++|+|+++++.+++.+++++|| .|+++.|.|..|
T Consensus 42 ~~~~~~~~~~~~~a~~~g------~~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~ 115 (363)
T TIGR01437 42 EIKELVNKTGEYIANLLG------VEDAVIVSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAP 115 (363)
T ss_pred CHHHHHHHHHHHHHHhhC------CCeEEEEcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCc
Confidence 457888888888887765 45889999999999999999999998 999999888755
Q ss_pred -HHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE-EeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 157 -DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL-ITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 157 -~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~-l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
...+... |++++.++.+ +.+|++++++++.+ ++++++ +++|+||+|.+.+ +++|+++|+++|++
T Consensus 116 ~~~~~~~~-g~~~v~v~~~----~~~d~~~le~ai~~------~t~ai~~v~~~~~~~g~~~~---~~~i~~~a~~~gi~ 181 (363)
T TIGR01437 116 VETMVRLG-GGKVVEAGYA----NECSAEQLEAAITE------KTAAILYIKSHHCVQKSMLS---VEDAAQVAQEHNLP 181 (363)
T ss_pred hHHHHHhc-CCeEEEEcCC----CCCCHHHHHHhcCh------hceEEEEEecCCCCcCCcCC---HHHHHHHHHHcCCe
Confidence 3455554 9999888753 35899999999975 678765 6788999999999 67789999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc----CCC
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF----GLV 310 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~----~~~ 310 (483)
+|+|++|+. .- .+...+ +..+++.|++|.+ .|++.|+++++ +.+.+........ ...
T Consensus 182 vivD~a~~~---~~----~~~~~~---------g~D~~~~S~~K~l--~gp~~G~l~~~-~~~i~~~~~~~~~~~~~~~~ 242 (363)
T TIGR01437 182 LIVDAAAEE---DL----QKYYRL---------GADLVIYSGAKAI--EGPTSGLVLGK-KKYIEWVKLQSKGIGRAMKV 242 (363)
T ss_pred EEEECCCCC---ch----HHHHHc---------CCCEEEEeCCccc--CCCceEEEEEc-HHHHHHHHhccCCCcceecc
Confidence 999999961 11 111122 2346678999976 68889999984 4444443221111 001
Q ss_pred Ch---HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC--CceE-----EEeeecCc-hhhccC
Q 011570 311 SS---QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS--NAGL-----FLWMDLHH-LLKEQT 378 (483)
Q Consensus 311 s~---~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~--~~g~-----f~~~~l~~-~~~~~~ 378 (483)
.. .+..++...+.+ +..+..+.+.++++.+.+.|.++ |+.+..+ ..+. -+.++... ..
T Consensus 243 ~~~~~~gl~aAl~~~~~------~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~---- 312 (363)
T TIGR01437 243 GKENILGLTAALEQYLS------TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGM---- 312 (363)
T ss_pred CHHHHHHHHHHHHHHHc------cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCC----
Confidence 11 122222222211 11222333445667788999887 8877632 1111 11122211 11
Q ss_pred hHHHHHHHHHHHHhcC--eEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVK--LNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~g--V~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
...++.+.|. +++ |.+++ .|. ..+.+|+++...+++|++.++++|+++
T Consensus 313 --~~~~l~~~L~-~~~~~I~~r~--~~~--~~~~~~l~~~~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 313 --TAADVVQALR-QGEPAIYTRG--YKA--NEGIIEIDPRSVTGGQLDIIVERIREI 362 (363)
T ss_pred --CHHHHHHHHh-cCCCCEEEee--eee--cCCeEEEEeecCCHHHHHHHHHHHHHh
Confidence 1236666664 446 66665 232 456799999877899999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=198.81 Aligned_cols=217 Identities=17% Similarity=0.269 Sum_probs=149.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hc
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RT 164 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~ 164 (483)
.+|+.+. ..+|++.+|++++ .+ ..+++++++.++..++.+++++||+|+++.|.|+.+...+.. ..
T Consensus 60 ~r~~~p~-~~~Le~~lA~l~G--------~~--~~~~~~sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 128 (398)
T PRK07504 60 SRYSNPT-VDMFEKRMCALEG--------AE--DARATASGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRY 128 (398)
T ss_pred ecCCCch-HHHHHHHHHHHhC--------CC--eeeEecCHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhc
Confidence 4565543 6899999999876 22 334566778888888888899999999999999876544321 23
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|++++.++ .+|++.+++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|...
T Consensus 129 G~~v~~vd-------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~ 192 (398)
T PRK07504 129 GIESTLVD-------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATP 192 (398)
T ss_pred CeEEEEEC-------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcccc
Confidence 88888775 2689999998863 7899999999999999999 778888888999999999999753
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEecChHHHHHHHH-hhhcC-CCChHHHHHHHHh
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYSYNDQVVSCARK-MSSFG-LVSSQTQHLIATM 321 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~~~~~l~~~~~~-~~~~~-~~s~~~q~~~~~~ 321 (483)
.+.. + ..+ +..+++.|+||.++.+|.|+| +++++++.+.+.++. ....+ .++++....+..-
T Consensus 193 ~~~~-----~-~~~---------gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~ 257 (398)
T PRK07504 193 LFQK-----P-LEL---------GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKG 257 (398)
T ss_pred ccCC-----c-hhh---------CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 2221 1 112 345788999999988999997 555644444433332 22222 2333333333333
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++. +..+.++..++...+.+.|+++
T Consensus 258 L~t-------l~~R~~~~~~na~~la~~L~~~ 282 (398)
T PRK07504 258 LET-------LPVRVRQQTESAAAIADFLAGH 282 (398)
T ss_pred cch-------HHHHHHHHHHHHHHHHHHHHcC
Confidence 332 2334444456667777778765
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=201.77 Aligned_cols=294 Identities=19% Similarity=0.220 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCCeEEEeCCCCcChHHHHhhh--cCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGDAFLVPTPYYPGFDRDLRWR--TGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~--~G~~~~ 169 (483)
..++|+.+|++++ .++++|++|+|+++++.+++.++. ++||.|+++.++|+.+...+... .|.+++
T Consensus 51 ~~~~r~~ia~~~g--------~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~ 122 (404)
T PRK14012 51 VDIARNQIADLIG--------ADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT 122 (404)
T ss_pred HHHHHHHHHHHcC--------cCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEE
Confidence 5677888888876 567899999999999999887763 78999999999998775544321 399999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ ++.+|++.+++++.+ ++++|++++++||||.+.+ +++|.++|+++|+++|+|++++. +.
T Consensus 123 ~v~~~~--~g~~d~~~l~~~i~~------~t~lv~~~~~~n~tG~~~~---~~~I~~la~~~g~~vivD~a~~~---g~- 187 (404)
T PRK14012 123 YLDPQS--NGIIDLEKLEAAMRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERGIIFHVDAAQSV---GK- 187 (404)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CCEEEEEECcCCCccchhh---HHHHHHHHHHcCCEEEEEcchhc---CC-
Confidence 998774 457899999999864 7889999999999999998 77888899999999999999963 22
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--------hcCCCChHHHHHHHHh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--------SFGLVSSQTQHLIATM 321 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--------~~~~~s~~~q~~~~~~ 321 (483)
.+ .++... +..+++.|++|.+| |+ ++|+++++++.......... ..+..+......+.++
T Consensus 188 ~~-~~~~~~---------~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~a 255 (404)
T PRK14012 188 VP-IDLSKL---------KVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEA 255 (404)
T ss_pred cc-cCcccC---------CCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHH
Confidence 11 122111 33456679999887 54 68999886543221111000 0111222222222222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC-----CceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS-----NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~-----~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
+.. .+.......++.++.++++.+.|+++ ++.+... ...+++|+.+... .++...| .++
T Consensus 256 l~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l---~~~ 320 (404)
T PRK14012 256 ARI---AKEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG---------ESLIMAL---KDL 320 (404)
T ss_pred HHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH---------HHHHHhC---CCe
Confidence 221 12223445566677777888888765 5554321 2234566655321 1333333 378
Q ss_pred EeeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 396 NVSPGSSFHCP-----------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 396 ~v~pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.|..|..|... ..+.||++++. .++++++.+++.|++++++.++
T Consensus 321 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~ 382 (404)
T PRK14012 321 AVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRE 382 (404)
T ss_pred EEEchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88887666432 13679999987 6999999999999998887643
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-21 Score=195.26 Aligned_cols=211 Identities=21% Similarity=0.253 Sum_probs=156.5
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~ 170 (483)
-..+|++.+|++.+ .+..++++++++++..++.+++++||+|+++.++|......+ +. .|+++..
T Consensus 41 ~~~~le~~la~l~g----------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~g~~~~~ 109 (369)
T cd00614 41 TVDALEKKLAALEG----------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPK-LGIEVTF 109 (369)
T ss_pred hHHHHHHHHHHHHC----------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhh-cCeEEEE
Confidence 36788888888865 246677788899999999999999999999999998866443 33 4888888
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.+ |++.+++++++ ++++|++.+|+||+|.+.+ +++|+++|+++|+++|+|++|+...+..
T Consensus 110 v~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~~-- 171 (369)
T cd00614 110 VDPD-------DPEALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQR-- 171 (369)
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcCC--
Confidence 7643 57888888753 7899999999999999998 7788999999999999999997543211
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~ 327 (483)
+ .. ....+++.|+||.+|.+| ++.||++++++.+.+.+..... + +.++++...++...++.
T Consensus 172 ---~-~~---------~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~t--- 235 (369)
T cd00614 172 ---P-LE---------LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKT--- 235 (369)
T ss_pred ---h-hh---------hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCC---
Confidence 1 11 244578899999998665 8999999966466665554433 2 33555555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVG 354 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~g 354 (483)
+..+.++..++...+.+.|++++
T Consensus 236 ----l~~r~~~~~~na~~la~~L~~~~ 258 (369)
T cd00614 236 ----LPLRMERHSENALKVAEFLEKHP 258 (369)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 23345566777888888888873
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=193.52 Aligned_cols=214 Identities=18% Similarity=0.149 Sum_probs=150.8
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---h
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---R 163 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~ 163 (483)
..+|+.+ ...+|++++|++.. ++.++++++++++..++.+++++||+|+++.|+|+.+...+.. .
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~~-----------~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~ 112 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELEG-----------AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAP 112 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHcC-----------CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhc
Confidence 4567654 57999999999851 3445555556799999999999999999999999887665432 1
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|++++.++.++.. + .+. +++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..
T Consensus 113 ~G~~v~~v~~~~~~------~----~~~------~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~ 173 (366)
T PRK07582 113 LGVTVREAPTAGMA------E----AAL------AGADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTAT 173 (366)
T ss_pred CeEEEEEECCCChH------H----Hhc------cCceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCC
Confidence 49999998865321 1 111 27899999999999998887 88889999999999999999963
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~ 320 (483)
. +.. . ++ ++ ...++++|+||.++ .+|+|+||+++.++.+.+.+...... ...+++....+..
T Consensus 174 ~-~~~-~---p~-~~---------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r 238 (366)
T PRK07582 174 P-LGQ-R---PL-EL---------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHR 238 (366)
T ss_pred c-ccc-C---ch-hc---------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 2 221 1 11 12 22367899999984 46799999998666676666544433 2345566555555
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.+... ..+.++..++...+.+.|+++
T Consensus 239 ~l~tl-------~~R~~~~~~na~~la~~L~~~ 264 (366)
T PRK07582 239 SLGTL-------GLRFARQCANALAVAELLAGH 264 (366)
T ss_pred ccccH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 55542 333345567777788888876
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=194.97 Aligned_cols=293 Identities=20% Similarity=0.255 Sum_probs=209.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHH----HhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRD----LRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~ 167 (483)
+++.|+.+|++++ .+ .++|++|.|+|++++.+..++ ..+||+|++..-.|+..... .+. .|++
T Consensus 68 ~e~aRe~va~~~~--------a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~-~Ga~ 138 (405)
T COG0520 68 YEAAREAVARFLN--------ADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR-TGAK 138 (405)
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHh-cCcE
Confidence 5788999999987 45 489999999999999999998 69999999999888654433 333 3999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.+|+++ +..++++.++..+.+ +||+|.++.-+|.||.+.+ +++|+++|+++|+++++|.+++.
T Consensus 139 v~~i~~~~--~g~~~~~~~~~~i~~------~Tklvais~vSn~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~---- 203 (405)
T COG0520 139 VRVIPLDD--DGLLDLDALEKLITP------KTKLVALSHVSNVTGTVNP---VKEIAELAHEHGALVLVDAAQAA---- 203 (405)
T ss_pred EEEEecCC--CCCcCHHHHHHhcCC------CceEEEEECccccccccch---HHHHHHHHHHcCCEEEEECcccc----
Confidence 99999884 457899999997763 8999999999999999999 99999999999999999999863
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCcc-ccCCCCceEEEEEecChHHHHHHHHh---------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSK-DMGFPGFRVGIIYSYNDQVVSCARKM---------------------S 305 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK-~~g~~GlRiG~li~~~~~l~~~~~~~---------------------~ 305 (483)
+ ....++..+ +..+++.|..| .+|-.| +|.+++.++.+.+..... .
T Consensus 204 ~-h~~idv~~l---------~~Df~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~ 271 (405)
T COG0520 204 G-HLPIDVQEL---------GCDFLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPL 271 (405)
T ss_pred C-ccCCCchhc---------CCCEEEEcccccccCCCc--eEEEEEchHHHhhcCCcccCCCceeeecccccccccCcch
Confidence 2 222344333 66788899999 565336 899999544443320000 0
Q ss_pred hc--CCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcC-CceeecCC---ceEEEeeecCchhhccC
Q 011570 306 SF--GLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQV-GIGCLKSN---AGLFLWMDLHHLLKEQT 378 (483)
Q Consensus 306 ~~--~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~---~g~f~~~~l~~~~~~~~ 378 (483)
.+ +..+......+.++++ ++.+. .++..++.++..+++.+.|.++ +++++.+. .+-.+.+.++..
T Consensus 272 rfe~gTpn~~~~i~l~aAl~---~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~----- 343 (405)
T COG0520 272 RFEAGTPNIAGAIGLAAALD---YLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGI----- 343 (405)
T ss_pred hhccCCchHHHHHhHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCC-----
Confidence 00 1112122222233332 11211 3455666777788899999988 78887653 344566666642
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCC------CCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCP------NPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
...+++..|-+ .||.++.|..|... -++.+|+|++. .|+|+++.+++.|+++.+
T Consensus 344 --~~~dv~~~L~~-~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 344 --HPHDVATLLDE-KGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred --CHHHHHHHHHh-CCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 12366666664 58999999877532 13459999987 599999999999998764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=198.54 Aligned_cols=293 Identities=17% Similarity=0.211 Sum_probs=200.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcChHHHH---hhhcCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPGFDRDL---RWRTGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~~~~---~~~~G~~~ 168 (483)
..++|+.++++++ +++++|++|+|+++++..++.++ .++||+|+++.+.|+.+...+ +. .|.++
T Consensus 49 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~-~g~~v 119 (402)
T TIGR02006 49 VENARNQVAELIG--------ADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLER-EGFEV 119 (402)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHh-cCCEE
Confidence 5677888888876 57889999999999999988765 368999999999998766554 33 39999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.+++++ ++.+|++.+++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++++|++++. ..
T Consensus 120 ~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~v~~~~n~tG~~~~---~~~I~~l~~~~g~~livD~a~a~---g~ 185 (402)
T TIGR02006 120 TYLPPKS--NGLIDLEELKAAIRD------DTILVSIMHVNNEIGVIQD---IAAIGEICRERKVFFHVDAAQSV---GK 185 (402)
T ss_pred EEEccCC--CCcCCHHHHHHhcCC------CCEEEEEECCCcCceeccc---HHHHHHHHHHcCCEEEEEcchhc---CC
Confidence 9998874 457899999998853 6889999999999999998 77888899999999999999963 22
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh------h--hcCCCChHHHHHHHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM------S--SFGLVSSQTQHLIAT 320 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~------~--~~~~~s~~~q~~~~~ 320 (483)
.+ .++.. ....+++.|.+|.+|.+| +|+++..++......... . ..+..+.....++..
T Consensus 186 -~~-~~~~~---------~~~D~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~ 252 (402)
T TIGR02006 186 -IP-INVNE---------LKVDLMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGE 252 (402)
T ss_pred -cc-cCccc---------cCCCEEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHH
Confidence 11 12211 234467778899887556 898888544322110000 0 113334444444444
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC-----ceEEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN-----AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~-----~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
.++ ++++..+...+++++.++++.+.|.++ ++.+..+. ..+. +.++. .. ..++...+ .+
T Consensus 253 al~---~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~--v~f~~-~~------~~~~~~~l---~~ 317 (402)
T TIGR02006 253 AFR---IAKEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLN--VSFNY-VE------GESLIMAL---KD 317 (402)
T ss_pred HHH---HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEE--EEEeC-cC------HHHHHHhc---CC
Confidence 443 223345666677888889999998876 56554211 1112 22221 11 11333322 48
Q ss_pred eEeeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 395 LNVSPGSSFHCP-----------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 395 V~v~pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
|.++.|..|... ..+++|+|++. .|+++++++++.|+++++..+.
T Consensus 318 i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 318 LAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRE 380 (402)
T ss_pred EEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999888776531 13689999987 5999999999999998877643
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-21 Score=189.02 Aligned_cols=302 Identities=19% Similarity=0.202 Sum_probs=214.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
++...-+.+|.+.+|+|++ .++.+++++|- .++..++.+|++++|.|+...-.|.+..+.++.. +.+++
T Consensus 80 ~G~~~~h~~LE~~lA~f~g---------~e~al~f~SGy-~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls-~a~~~ 148 (388)
T COG0156 80 SGTSDLHVELEEELADFLG---------AEAALLFSSGF-VANLGLLSALLKKGDLIFSDELNHASIIDGIRLS-RAEVR 148 (388)
T ss_pred cCCcHHHHHHHHHHHHHhC---------CCcEEEEcccc-hhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhC-CCcEE
Confidence 4444457899999999987 34556666555 4666777899999999999999999999999975 99998
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.+.. .|++.||+.++++...+.+.++|+....-...|.+-| +.+|++++++|+.++++||+|+-.+++.
T Consensus 149 ~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~- 217 (388)
T COG0156 149 RFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGP- 217 (388)
T ss_pred EecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhCcEEEEEccccccccCC-
Confidence 8874 4789999999886533323466666677788999999 8888999999999999999999888875
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-hhhc--C-CCChHHHHHHHHhcCCh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-MSSF--G-LVSSQTQHLIATMLSDD 325 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~~~~--~-~~s~~~q~~~~~~l~~~ 325 (483)
.. ..+..... + ...+.+|+++||||+||..| ||+.+ +..+.+.+.. .+++ . ..++....++...++.
T Consensus 218 ~G-rG~~e~~g-~--~~~~vdi~~gTlsKAlGs~G---g~v~g-~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~- 288 (388)
T COG0156 218 NG-RGLAEHFG-L--EPEEVDIIVGTLGKALGSSG---GYIAG-SAALIDYLRNRARPFIFSTALPPAVAAAALAALRI- 288 (388)
T ss_pred CC-ccHHHHhC-C--CCccceEEEEEchhhhcccC---ceeeC-cHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHH-
Confidence 22 23333221 0 02356889999999999888 99999 5666666554 3444 2 2233222233333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC 405 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~ 405 (483)
++ .....++++.++..++...+...|+.+.++.. ..+.+.+.+. .....+...|+++ ||.+.+......
T Consensus 289 --l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~~~s~s-~I~pv~~gd~------~~a~~~s~~l~~~-Gi~v~~i~~PTV 357 (388)
T COG0156 289 --LE-EGPERRERLQELAAFFRSLLKALGLVLLPSES-PIIPVILGDE------ERALEASRALLEE-GIYVSAIRPPTV 357 (388)
T ss_pred --HH-hCHHHHHHHHHHHHHHHHHHHhcCCccCCCCC-CeeeeEeCCH------HHHHHHHHHHHHC-CeeEeeecCCCC
Confidence 11 13455667777878888777766877655544 4666666542 2244777888877 999988766555
Q ss_pred C-CCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 406 P-NPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 406 ~-~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
+ +...+|+++.. .++++++.+++.|.++
T Consensus 358 p~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 358 PKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 4 34579999966 6999999999998764
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-21 Score=192.15 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=149.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----Hhhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~ 163 (483)
.+|+.+ -..+|++.+|++.+ .+..+++++++.++..++.+++.+||+|+++.|.|+..... +..
T Consensus 54 ~r~~~p-~~~~le~~lA~l~g----------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~- 121 (391)
T TIGR01328 54 SRLGNP-TVSNLEGRIAFLEG----------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTK- 121 (391)
T ss_pred eCCCCc-hHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhc-
Confidence 345544 25789999999986 23467777778899999999999999999999988754433 333
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|+++..++++ |++.+++++.+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|..
T Consensus 122 ~G~~~~~vd~~-------d~e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~ 185 (391)
T TIGR01328 122 FGIQVDFINMA-------IPEEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFAT 185 (391)
T ss_pred CCeEEEEECCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCch
Confidence 48888888753 68888888864 7899999999999999998 77888888999999999999975
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHh--hhc-C-CCChHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKM--SSF-G-LVSSQTQHLI 318 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~--~~~-~-~~s~~~q~~~ 318 (483)
..+. . ++ .. ...+++.|+||.+|.+|.++ |++++ ++.+.+.++.. ... + .+++.....+
T Consensus 186 ~~~~--~---~~-~~---------g~Divv~S~sK~lgg~g~~~gG~v~~-~~~li~~l~~~~~~~~~g~~l~~~~a~l~ 249 (391)
T TIGR01328 186 PMLT--N---PV-AL---------GVDVVVHSATKYIGGHGDVVAGLICG-KAELLQQIRMVGIKDMTGSVISPFDAWLI 249 (391)
T ss_pred hccC--C---ch-hc---------CCCEEEccccccccCCCCceEEEEEc-CHHHHHHHHHHHHHhCCCCCCCcHHHHHH
Confidence 3222 1 11 11 23377899999999889875 56666 55555554432 112 2 2344333333
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
..-++. +..+.++..++...+.+.|+++
T Consensus 250 l~~L~t-------l~~r~~~~~~na~~la~~L~~~ 277 (391)
T TIGR01328 250 LRGLKT-------LNIRMKRHSENAMKVAEYLKSH 277 (391)
T ss_pred HhCcCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 333332 2333445566677777777765
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-21 Score=192.28 Aligned_cols=212 Identities=19% Similarity=0.234 Sum_probs=149.8
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEE
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVP 170 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~ 170 (483)
....+|++++|++++. ...++ ++++++++..++.+++++||+|+++.|+|+.....+... .|+++..
T Consensus 61 p~~~~Le~~lA~~~g~---------~~~i~-~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 61 PTRTALEEQLAALEGG---------AYGRA-FSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred ccHHHHHHHHHHHhCC---------CceEE-eCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 3578999999999862 22344 455689999999999999999999999998654443321 2777766
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++. .|++.+++++.+ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|+..... .
T Consensus 131 ~d~-------~d~e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~--~ 192 (388)
T PRK07811 131 VDL-------SDLDAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ--Q 192 (388)
T ss_pred eCC-------CCHHHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC--C
Confidence 653 378999988864 7899999999999999877 888888999999999999999753221 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc-CC-CChHHHHHHHHhcCChhH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF-GL-VSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~-~~-~s~~~q~~~~~~l~~~~~ 327 (483)
++ .+ ...+++.|+||.++.+| .+.||++++++.+.+.+...... +. .++.....+...++.
T Consensus 193 ---p~-~~---------gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~t--- 256 (388)
T PRK07811 193 ---PL-AL---------GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKT--- 256 (388)
T ss_pred ---ch-hh---------CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCc---
Confidence 11 11 23478899999998644 67899998777776665554433 22 333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 257 ----l~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 257 ----LAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444566777788888776
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-21 Score=193.72 Aligned_cols=214 Identities=20% Similarity=0.260 Sum_probs=148.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhhc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWRT 164 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~~ 164 (483)
+|+.+ -...|++.+|++++ .+..+++++++.++..++.+++++||+|+++.|+|..... .+.. .
T Consensus 61 r~~~p-~~~~le~~lA~l~g----------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~-~ 128 (403)
T PRK07503 61 RISNP-TLALLEQRMASLEG----------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGE-F 128 (403)
T ss_pred CCCCc-hHHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhh-C
Confidence 44443 36889999999876 1234666677889999999999999999999999976433 2334 4
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|++++.++.+ |++.+++++.+ ++++|++++|+||||.+.+ +++|.++|+++|++||+|++|...
T Consensus 129 G~~v~~vd~~-------d~~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~ 192 (403)
T PRK07503 129 GVTVRHVDLT-------DPAALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTP 192 (403)
T ss_pred CEEEEEeCCC-------CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccc
Confidence 8988888753 68889888864 7899999999999999998 788888889999999999999754
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--hhc--CCCChHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM--SSF--GLVSSQTQHLIA 319 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~--~~~--~~~s~~~q~~~~ 319 (483)
.. . . ++ .+ ...++++|+||.+|.+| +|.|+++. ++.+.+.++.. ... ..++++.+..+.
T Consensus 193 ~~-~-~---~l-~~---------g~Di~v~S~tK~l~g~gd~~gG~v~~-~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l 256 (403)
T PRK07503 193 YL-Q-R---PL-EL---------GADLVVHSATKYLGGHGDITAGLVVG-GKALADRIRLEGLKDMTGAVMSPFDAFLLM 256 (403)
T ss_pred cc-C-C---ch-hh---------CCCEEEccccccccCCCceeEEEEEc-CHHHHHHHHhhhHHhCcCCCCCHHHHHHHH
Confidence 22 2 2 11 12 33478899999998765 78899886 55565555422 222 234555444443
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.-++. +..+.++..++...+.+.|+++
T Consensus 257 ~~L~t-------l~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 257 RGLKT-------LALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred cCcch-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 33332 2233333345666677777765
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-23 Score=180.41 Aligned_cols=148 Identities=60% Similarity=1.158 Sum_probs=129.9
Q ss_pred chhhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccc-cccccc
Q 011570 8 QVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEG-LNEFKG 86 (483)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 86 (483)
.+..+++++.+.++|..+|||.+|+.+..++|++..||.++|+|+++||.++.+.+..++.+.+.+.+..+++ .....+
T Consensus 5 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~ 84 (153)
T PLN02994 5 ENQLLSKLALADKHGEASPYFAGWKAYDLNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKD 84 (153)
T ss_pred chhhhhhhcccccCCCCchHHHHHHHHhcCCCCcccCCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999998866544444333 222334
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG 155 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~ 155 (483)
+..|+++.|.++||+++|+|+.+.+|..+++++++|++|+|+++++..++.+|++|||.|++++|+|+.
T Consensus 85 ~a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 85 IALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred HhcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence 466999999999999999999998885566889999999999999999999999999999999999973
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-21 Score=196.84 Aligned_cols=269 Identities=17% Similarity=0.166 Sum_probs=179.6
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC---------CC-CeEEEeCCCCcChH-HHHhhhcCcE------------EEEeecCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD---------PG-DAFLVPTPYYPGFD-RDLRWRTGVQ------------LVPVVCDS 175 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~---------~g-d~Vlv~~P~y~~~~-~~~~~~~G~~------------~~~v~~~~ 175 (483)
.+.+++++++++++..++..... +| ++|+...-+|.+.. ..+.. .+.. +..++.
T Consensus 97 ~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 173 (396)
T PRK04073 97 KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSL-SSEEEYKRGFGPMLPGIKKIPY-- 173 (396)
T ss_pred CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhh-cCCcccccCCCCCCCCceEeCC--
Confidence 36899999999999998876531 34 67888877776543 33222 1211 111211
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHH-HHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRE-TLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~-~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
.|++.+++.+.+ ++++|++++|+||||.+++.+ .+++|.++|+++|+++|+||+|.++...+ .. ..
T Consensus 174 -----~d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g-~~-~~ 240 (396)
T PRK04073 174 -----GDLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG-KL-FA 240 (396)
T ss_pred -----CCHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc-HH-HH
Confidence 168888887753 678888888899999998764 69999999999999999999998753332 11 11
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFI 332 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (483)
.+... .... +.+|||.+|.+|+|+||+++ ++++.+.+.... ..+..+++++.++.+.|+... +
T Consensus 241 -~~~~~-----~~pd---i~~~sK~lg~gg~~ig~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~--~--- 305 (396)
T PRK04073 241 -CDWDN-----VTPD---MYILGKALGGGVFPISCVAA-NRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLE--E--- 305 (396)
T ss_pred -hhhcC-----CCCC---EEEecccccCCCCcceEEEE-cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHH--h---
Confidence 11211 1122 23689999988899999999 455665553321 223467888888777775211 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC---ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 333 AESAKRIAERHKAFTWGLSQVG---IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 333 ~~~~~~l~~~~~~l~~~L~~~g---i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
....++.+++++++.+.|++++ +....+. |+|++++++.. ..++++.|++ +||.+.+. +++
T Consensus 306 ~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~-g~~~~~~~~~~--------~~~~~~~l~~-~Gv~~~~~------~~~ 369 (396)
T PRK04073 306 EKLPERSLELGEYFKEQLKEIDNPMIKEVRGR-GLFIGVELNEP--------ARPYCEALKE-EGLLCKET------HET 369 (396)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCCcccceecc-eEEEEEEecch--------HHHHHHHHHH-CCeEEecC------CCC
Confidence 1122344556677777777653 3333444 56788888631 2367777765 69998763 246
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 410 WFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 410 ~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+|||++.. .+++++++++++|++++
T Consensus 370 ~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 370 VIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred EEEEECCcccCHHHHHHHHHHHHHHh
Confidence 89999754 59999999999998875
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=199.65 Aligned_cols=309 Identities=14% Similarity=0.135 Sum_probs=195.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhc--CcE
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRT--GVQ 167 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~--G~~ 167 (483)
+..+..+|+++|++++. ..++|++++|+++++..+++... ...++|+...++|.++...+.... +..
T Consensus 86 ~~~~~~~lae~l~~~~~---------~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~ 156 (423)
T TIGR00713 86 PTEAEILLAKEIISRVP---------SVEMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAA 156 (423)
T ss_pred CCHHHHHHHHHHHHhCC---------cccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCccc
Confidence 44567899999998764 23689999999999999887532 245899999999998754333210 111
Q ss_pred EEEeecCCC-------CCcc---cCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCC-HHHHHHHHHHHhhcCcEE
Q 011570 168 LVPVVCDSS-------NDFK---VTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLD-RETLKDIVSFINEKNIHL 235 (483)
Q Consensus 168 ~~~v~~~~~-------~~~~---~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~-~~~l~~i~~~a~~~~~~i 235 (483)
....+..+. ..+. .|++.+++.+.+. +.++++|++. +|+| +|.+.+ .+.+++|.++|++||+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~ll 232 (423)
T TIGR00713 157 TLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLL 232 (423)
T ss_pred ccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEE
Confidence 111110000 0000 2789999888642 2367788775 7888 798887 688999999999999999
Q ss_pred EEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-----hcCCC
Q 011570 236 VCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-----SFGLV 310 (483)
Q Consensus 236 I~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-----~~~~~ 310 (483)
|+||+|.++.++ ..+ . ..... . .++ +.||||.+| +|+|+||+++ ++.+.+.+.... ..+..
T Consensus 233 I~DEv~~g~r~g--~~~-~-~~~~~-~---~pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~~~~T~~~ 298 (423)
T TIGR00713 233 IFDEVMTGFRVA--LGG-A-QEYFG-V---EPD----LTTLGKIIG-GGLPVGAFGG-RREIMERLAPEGPVYQAGTLSG 298 (423)
T ss_pred EEEccccccccC--cch-h-HHHhC-C---Ccc----hhhhhhhhc-CCCceeeeeE-HHHHHHhhCcCCCeeeccCCCC
Confidence 999999876332 221 1 11111 0 223 238999999 9999999999 456666554211 11346
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec-CCceEE-EeeecCchhh-----ccChHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK-SNAGLF-LWMDLHHLLK-----EQTYEAEM 383 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~-~~~g~f-~~~~l~~~~~-----~~~~~~~~ 383 (483)
+++++.++.+.|+.... ..+.++.++.....++.+.+.+.++++.... ..|+++ +++..+...+ ..+.....
T Consensus 299 ~~~~~aaa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~ 377 (423)
T TIGR00713 299 NPLAMAAGLATLKLLDE-EGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFA 377 (423)
T ss_pred CHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHH
Confidence 78888877666652110 1134455555666667777777777765532 334332 2233221100 00111122
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
.++..+++ +||.+.++ .| +.+|+++. .+++++++++++|.+++++
T Consensus 378 ~~~~~l~~-~Gv~v~~~-~~-----~~~~l~~~-~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 378 KFFHEMLD-KGVFLPPS-QF-----EACFLSAA-HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred HHHHHHHH-CCeEEecC-Cc-----cceeeECC-CCHHHHHHHHHHHHHHHhh
Confidence 56777775 69998754 22 35888886 6999999999999998864
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=193.84 Aligned_cols=216 Identities=16% Similarity=0.221 Sum_probs=155.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh----HHHHhhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF----DRDLRWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~----~~~~~~~ 163 (483)
.+|+.+. ..+|++.+|++.+ .++.+++++++.++..++.+++++||+|+++...|++. ...++..
T Consensus 65 ~r~~~p~-~~~le~~lA~l~g----------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 133 (403)
T PRK07810 65 SRYGNPT-VSMFEERLRLIEG----------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRW 133 (403)
T ss_pred eCCCCch-HHHHHHHHHHHhC----------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHc
Confidence 4566553 6789999999875 34777888888899999989999999999988666443 3445554
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|++++.++. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 134 -G~~v~~vd~-------~d~~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~ 196 (403)
T PRK07810 134 -GVETVFVDG-------EDLSQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFAT 196 (403)
T ss_pred -CcEEEEECC-------CCHHHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCc
Confidence 999988863 378899998864 7899999999999999998 88888999999999999999975
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHh-hhc-CCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKM-SSF-GLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~-~~~-~~~s~~~q~~~~~ 320 (483)
..+.. ++ .+ +..+++.|++|.++..|.++ |+++++++.+.+.++.. ... ..++++.+.++..
T Consensus 197 ~~~~~-----~~-~~---------gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~ 261 (403)
T PRK07810 197 PLLQR-----GL-PL---------GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLK 261 (403)
T ss_pred cccCC-----hh-hc---------CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 43221 11 11 34577899999998789887 78887555454434332 222 2356666655555
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
-|+. +..+.++..++...+.+.|+++
T Consensus 262 ~L~t-------l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 262 GLET-------LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred ccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 5543 3344444566666777778776
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=192.86 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=151.2
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----Hhhhc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRT 164 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~ 164 (483)
+|+.+ ...+|++.+|++.+ .+++++++|+++++..++.++++|||+|+++.|+|+.+... +.. .
T Consensus 61 r~~~p-t~~~Le~~lA~l~g----------~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~ 128 (394)
T PRK07050 61 LHATP-TSLALAQRLAEIEG----------GRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARD-F 128 (394)
T ss_pred CCCCH-HHHHHHHHHHHHhC----------CCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHh-c
Confidence 44433 25677777777654 46899999999999999999999999999999999987643 344 4
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|++++.++.. +.+.+++++++ ++|+|++++|+||+|.+ .++++|+++|+++|++||+|++|...
T Consensus 129 Gi~v~~vd~~-------~~~~l~~~i~~------~tklV~le~p~Np~~~~---~di~~I~~ia~~~gi~livD~a~a~~ 192 (394)
T PRK07050 129 GITVRFYDPL-------IGAGIADLIQP------NTRLIWLEAPGSVTMEV---PDVPAITAAARARGVVTAIDNTYSAG 192 (394)
T ss_pred CeEEEEECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccH---hhHHHHHHHHHHcCCEEEEECCcccc
Confidence 8988887632 34667777653 78999999999999754 55999999999999999999999743
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHh
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATM 321 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~ 321 (483)
.+.. + + ..+..+++.|+||.++ ..+++.|++++.++.+.+.++..+.. ..+++.....+..-
T Consensus 193 ~~~~-----~---l-------~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~ 257 (394)
T PRK07050 193 LAFK-----P---F-------EHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRG 257 (394)
T ss_pred cccC-----H---H-------HcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 2211 1 1 1244688999999986 34467899888777776666544443 23455444434333
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+.. +..+.++..++...+.+.|+++
T Consensus 258 l~t-------l~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 258 LPS-------LQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred CCc-------HHHHHHHHHHHHHHHHHHHHhC
Confidence 333 2223444455556677777765
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-21 Score=192.97 Aligned_cols=293 Identities=12% Similarity=0.134 Sum_probs=172.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCC-eEEEeCCCCcC-hH--HHHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGD-AFLVPTPYYPG-FD--RDLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd-~Vlv~~P~y~~-~~--~~~~~~~G~~ 167 (483)
..++++.++++++ . +.++.++| +++...++..+. .+|+ .|++.+..|.+ +. ...... +.+
T Consensus 93 ~~~l~~~la~~~~--------~--~~~~~~sG-~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~-~~~ 160 (402)
T PRK07505 93 LKDLEEALSELFG--------A--SVLTFTSC-SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICAD-ETE 160 (402)
T ss_pred HHHHHHHHHHHhC--------C--CEEEECCh-HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhc-CCe
Confidence 3556666666543 2 44555554 556665654432 2232 36666655543 21 112222 566
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.+|. .|++.+++++.+ +++++++++|+||||.+++ +++|.++|+++|+++|+||+|+...|+
T Consensus 161 v~~~~~-------~d~~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g 224 (402)
T PRK07505 161 VETIDH-------NDLDALEDICKT------NKTVAYVADGVYSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYG 224 (402)
T ss_pred EEEeCC-------CCHHHHHHHHhc------CCCEEEEEecccccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcC
Confidence 777664 378889888753 5678999999999999999 677788888999999999999654444
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcC----CCChHHHHHHHHhcC
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG----LVSSQTQHLIATMLS 323 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~----~~s~~~q~~~~~~l~ 323 (483)
..........+ .. ..++++++++||||.+|.+| ||+++.++.+.+.+......+ ++++++..++.+.+.
T Consensus 225 ~~g~~~~~~~~-~~---~~~d~~i~~~s~sK~~~~~G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~ 297 (402)
T PRK07505 225 KNGEGYVRSEL-DY---RLNERTIIAASLGKAFGASG---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAE 297 (402)
T ss_pred CCCCchHHHHc-CC---CCCCCeEEEEechhhhhccC---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence 31111111111 10 02477899999999999776 888765666776665543321 234455555545443
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
-. .++++.+..+.++++...+...+... ....+.++.++.++.. ....++.+.|+ ++||.++++..+
T Consensus 298 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~~~~~~~------~~~~~~~~~l~-~~Gi~v~~~~~p 364 (402)
T PRK07505 298 IH--LSEELDQLQQKLQNNIALFDSLIPTE----QSGSFLPIRLIYIGDE------DTAIKAAKQLL-DRGFYTSPVFFP 364 (402)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHhc----CCCCCCCEEEEEeCCH------HHHHHHHHHHH-HCCCeEeeecCC
Confidence 10 01122333444555544433322110 0111212223333321 11336777777 459999998543
Q ss_pred CCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 404 HCP-NPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 404 ~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
... +++++||+++. .+++++++++++|++++++
T Consensus 365 ~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 365 VVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 322 33689999976 5999999999999998754
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-21 Score=191.55 Aligned_cols=215 Identities=20% Similarity=0.283 Sum_probs=152.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~ 163 (483)
.+|+.+. ..+|++.+|++.+ .+.+++++++++++..++.+++++||+|+++.+.|+.... .+...
T Consensus 49 ~r~~~p~-~~~le~~la~l~g----------~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 117 (380)
T TIGR01325 49 SRYANPT-VAAFEERIAALEG----------AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRF 117 (380)
T ss_pred ecCCCch-HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHh
Confidence 3555443 6889999998865 2577889999999999999999999999999998875432 34444
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|++++.++.+ |++.+++++.+ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|..
T Consensus 118 -g~~v~~v~~~-------d~~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 118 -GIEVSFVDPT-------DLNAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred -CCEEEEECCC-------CHHHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCcc
Confidence 9998888753 67888887753 7899999999999999998 78888888999999999999975
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHh-hhcCC-CChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKM-SSFGL-VSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~-~~~~~-~s~~~q~~~~~ 320 (483)
..+. . ++ .+ ...+++.|+||.++.+|.++ |+++++ +.+.+.+... ...+. .++... ..
T Consensus 181 ~~~~--~---pl-~~---------g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~~~l~~~~~~~g~~~~p~~a---~~ 241 (380)
T TIGR01325 181 PVLQ--Q---PL-KL---------GADVVVYSATKHIDGQGRVMGGVIAGS-EELMAEVAVYLRHTGPAMSPFNA---WV 241 (380)
T ss_pred cccC--C---ch-hh---------CCCEEEeeccceecCCCCeEEEEEEeC-HHHHHHHHHHHHhhCCCCCHHHH---HH
Confidence 4222 1 11 11 33477889999998788887 677764 4455544433 23332 233332 23
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++..... +..+.++..+++..+.+.|+++
T Consensus 242 ~l~~l~t----l~~r~~~~~~~a~~la~~L~~~ 270 (380)
T TIGR01325 242 LLKGLET----LSLRMQKQFDSALAIAEWLQAQ 270 (380)
T ss_pred HHhccCc----HHHHHHHHHHHHHHHHHHHHcC
Confidence 3333332 3344555667778888888876
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=193.27 Aligned_cols=312 Identities=10% Similarity=0.071 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhhcCcEE-------
Q 011570 99 FRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWRTGVQL------- 168 (483)
Q Consensus 99 Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~------- 168 (483)
...++|+++....+ .+.. +.+++++++++++..++.. +.++ ..|+...++|.+....+... +...
T Consensus 85 ~~~~la~~l~~~~~--~~~~-~~~~f~~sGsea~e~Alklar~~~~r-~~iv~~~~~yHG~~~~~~~~-~~~~~~~~~~~ 159 (425)
T PRK08088 85 PYLELCEKMNQKVP--GDFA-KKTLLVTTGSEAVENAVKIARAATKR-SGVIAFTGAYHGRTHYTLAL-TGKVNPYSAGM 159 (425)
T ss_pred HHHHHHHHHHHhCC--CCCC-CEEEEeCCcHHHHHHHHHHHHHHhCC-CeEEEECCccCCccHHHHHh-hCCCCccccCC
Confidence 34477777776543 1111 4666666666766655544 3344 45677799998876554443 2211
Q ss_pred ---------EEeecCCCCCccc--CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEE
Q 011570 169 ---------VPVVCDSSNDFKV--TMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLV 236 (483)
Q Consensus 169 ---------~~v~~~~~~~~~~--d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI 236 (483)
+++|.+.. +... +++.|++.+.+. ....++.+|++... +|+++...+.+.+++|+++|+++|+++|
T Consensus 160 ~~~~~~~~~~~~p~~~~-~~~~~~~~~~l~~~l~~~-~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI 237 (425)
T PRK08088 160 GLMPGHVYRALYPCPLH-GVSEDDAIASIERIFKND-AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLI 237 (425)
T ss_pred CCCCCCcEEcCCCcccc-CccHHHHHHHHHHHHHhc-cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 11222111 1111 145577766421 11235655554422 6887788899999999999999999999
Q ss_pred EccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHH
Q 011570 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQT 314 (483)
Q Consensus 237 ~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~ 314 (483)
+||+|.++.+.+ .+.++... +.+..+.||||.++ +|+|+||+++ ++.+.+.+.... ..+..++++
T Consensus 238 ~Dev~~g~g~~g--~~~~~~~~---------~~~pdi~s~sK~l~-~G~rig~v~~-~~~~~~~~~~~~~~~t~~~~~~~ 304 (425)
T PRK08088 238 ADEVQTGAGRTG--TLFAMEQM---------GVAADLTTFAKSIA-GGFPLAGVTG-RAEVMDAIAPGGLGGTYAGNPIA 304 (425)
T ss_pred EeccccCCCcCc--chhHHhhc---------CCCCCEEEEecccc-CCCcceeeEe-cHHHHhhcCCCCCCCCCCcCHHH
Confidence 999998753332 22222111 22233689999998 9999999999 555655543222 123468899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-eeecCCceEEEeeecCchhhc--cChHHHHHHHHHHHH
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI-GCLKSNAGLFLWMDLHHLLKE--QTYEAEMALWRVIIN 391 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi-~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~ 391 (483)
|.++..+|+.... .+++++.++..+.+++.+.+.+.+.+. ....+. |+++|+.+....+. ........+...+++
T Consensus 305 ~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~ 382 (425)
T PRK08088 305 CAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHSKPNAKLTAQIVARARD 382 (425)
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceEEEEEEecCCCCCCCCHHHHHHHHHHHHh
Confidence 9999988876533 445555555544444555544444443 222223 78999999532110 011223466777765
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.||.+.|+..| .+.+||+++. .+++++++++++|++++++.
T Consensus 383 -~Gv~~~~~~~~----~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 383 -KGLILLSCGPY----YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred -CCCEEecCCCC----CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 59998876544 3679999985 58999999999999998754
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=189.92 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=136.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
..++++++++++.+.+| .+++++|+|+++++.+++.++ ++|||+|+++.|+|..+...+... |++++.++++
T Consensus 29 ~g~~~~~~e~~la~~~g------~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~-G~~~v~vd~d 101 (376)
T TIGR02379 29 DGPFSRRCETWLENRTG------TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDIR 101 (376)
T ss_pred CcHHHHHHHHHHHHHhC------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEecC
Confidence 34577777777776544 578999999999999999887 899999999999999988888775 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCcc
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSFV 253 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~~ 253 (483)
++ +|.+|++.+++++.+ ++++|+ |+||+|...+ +.+|.++|+++|++||+|++|+... +.+ .+..
T Consensus 102 ~~-~~~~d~~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la~~~~i~vIeDaa~~~g~~~~~-~~~g 167 (376)
T TIGR02379 102 PD-TMNIDETLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALANKHQLFVIEDAAQGVMSTYKG-RALG 167 (376)
T ss_pred CC-cCCCCHHHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHHHHCCCEEEEECccccCCccCC-cccC
Confidence 54 588999999998864 788876 6788999988 7788999999999999999998643 333 2211
Q ss_pred hHHHhhhhccccCCCeEEEEecCc----cccCCCCceEEEEEecChHHHHHHHHhhh
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLS----KDMGFPGFRVGIIYSYNDQVVSCARKMSS 306 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~S----K~~g~~GlRiG~li~~~~~l~~~~~~~~~ 306 (483)
....+++|| |.+. +|.+.|+++++++++.+.++.++.
T Consensus 168 ---------------~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 168 ---------------SIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred ---------------CCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence 111233444 8885 788999999987888877766544
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=188.76 Aligned_cols=287 Identities=14% Similarity=0.142 Sum_probs=189.5
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--------CCCCeEEEeCCCCcChHHHHhhhcCcEEEE---eecCCC--CCcccCHHH
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--------DPGDAFLVPTPYYPGFDRDLRWRTGVQLVP---VVCDSS--NDFKVTMEA 185 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~---v~~~~~--~~~~~d~~~ 185 (483)
.+.+++++++++++..++.... .+...|+..+.+|++.........+..... .++... .-...|++.
T Consensus 96 ~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 175 (406)
T PRK12381 96 ADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNS 175 (406)
T ss_pred CCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHH
Confidence 4699999999999999997742 234689999999987765433322321100 011000 001237888
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCcCCC--CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 186 LEAAYEKAQESNIRIKGVLITNPSNPLGTFL--DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 186 l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
+++.+.+ ++++|++ +|.||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.+ . +.+.....-
T Consensus 176 l~~~l~~------~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G-~-~~~~~~~~v--- 243 (406)
T PRK12381 176 ASALIDD------QTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-E-LYAYMHYGV--- 243 (406)
T ss_pred HHHhccC------CeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc-c-hhhhHhhCC---
Confidence 8887752 6666666 7999998765 78999999999999999999999997754443 2 222111110
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAE 341 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 341 (483)
.++ +.||||.+| +|+|+||+++ ++.+.+.+.... ..+..+++.+.++.+.++. +. ....++.+++
T Consensus 244 --~pD----i~t~sK~l~-gG~~ig~~~~-~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~---l~--~~~~~~~~~~ 310 (406)
T PRK12381 244 --TPD----VLTTAKALG-GGFPIGAMLT-TEKCASVMTVGTHGTTYGGNPLASAVAGKVLEL---IN--TPEMLNGVKQ 310 (406)
T ss_pred --CCC----EEEehhhhh-CCCceEEEEE-cHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---Hh--hccHHHHHHH
Confidence 222 249999998 9999999999 466666553321 1234577888877776532 11 1234566677
Q ss_pred HHHHHHHhhhcCC--c--eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc
Q 011570 342 RHKAFTWGLSQVG--I--GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN 417 (483)
Q Consensus 342 ~~~~l~~~L~~~g--i--~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~ 417 (483)
+.+++.+.|++++ . .......|++++++++.... .....+...++ ++||.+.++ +++++||+++.
T Consensus 311 ~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~----~~~~~~~~~l~-~~Gv~v~~~------g~~~lRl~p~~ 379 (406)
T PRK12381 311 RHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA----GKAKQISQEAA-KAGVMVLIA------GPNVVRFAPAL 379 (406)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh----hHHHHHHHHHH-HCCcEEeeC------CCCEEEEeCCc
Confidence 7777877777653 2 12233457888998865211 11235555555 569999753 23589999976
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhcc
Q 011570 418 -MDDRTMEIALSRITSFMLKNVEAK 441 (483)
Q Consensus 418 -~~~e~l~~~l~~L~~~l~~~~~~~ 441 (483)
.+++++++++++|.+++++..+++
T Consensus 380 ~~t~~~i~~~~~~l~~~l~~~~~~~ 404 (406)
T PRK12381 380 NISEEEITTGLDRFARACERFVSRG 404 (406)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 699999999999999998776553
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=186.45 Aligned_cols=211 Identities=21% Similarity=0.217 Sum_probs=149.1
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh--cCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR--TGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~--~G~~~~~v~ 172 (483)
...+|++.+|++++ .+++++++|+++++..++.+++++||+|+++.|+|..+...++.. .|+++..+.
T Consensus 54 ~~~~lE~~lA~l~g----------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~ 123 (385)
T PRK08574 54 TLRPLEEALAKLEG----------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY 123 (385)
T ss_pred cHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC
Confidence 46899999999976 357788899999999999999999999999999999877665321 377776543
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+|++.+++++++ .++++|++++|+||||.+++ +++|+++|+++|++||+|++|+... .. .
T Consensus 124 --------~d~~~l~~~i~~-----~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~-~~-~-- 183 (385)
T PRK08574 124 --------PSTEDIIEAIKE-----GRTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPL-LY-R-- 183 (385)
T ss_pred --------CCHHHHHHhcCc-----cCceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCccc-cC-C--
Confidence 467888888753 26899999999999999999 7788999999999999999996321 11 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCce-EEEEEecChHHHHHHHHhhh-cC-CCChHHHHHHHHhcCChhHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR-VGIIYSYNDQVVSCARKMSS-FG-LVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR-iG~li~~~~~l~~~~~~~~~-~~-~~s~~~q~~~~~~l~~~~~~~ 329 (483)
++ . .+..+++.|+||.++.+|-. .|++++.++.+.+.+..... ++ .++++....+..-++.
T Consensus 184 -~l-~---------~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~t----- 247 (385)
T PRK08574 184 -PL-R---------HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKT----- 247 (385)
T ss_pred -hh-h---------hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCc-----
Confidence 11 1 13458889999999766655 47777766666665544433 33 2344333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 248 --L~~R~~~~~~na~~la~~L~~~ 269 (385)
T PRK08574 248 --LEVRFERQCRNAMAIAEFLSEH 269 (385)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC
Confidence 2333444455667777777765
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=194.79 Aligned_cols=281 Identities=16% Similarity=0.187 Sum_probs=190.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC----CC-CeEEEeCCCCcChHHH---HhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD----PG-DAFLVPTPYYPGFDRD---LRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~----~g-d~Vlv~~P~y~~~~~~---~~~~~G~~ 167 (483)
..++|+.++++++ +++++|++|+|+++++..++.++.. +| +.|++....|+.+... ++.. |++
T Consensus 44 ~~~~r~~la~~~g--------~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~-G~~ 114 (353)
T TIGR03235 44 VERARKQVAEALG--------ADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERN-GFT 114 (353)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhc-CCE
Confidence 4577888888776 5788999999999999999888753 56 7888887777665443 3343 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++.++ ++.+|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++++. +
T Consensus 115 v~~v~~~~--~~~~d~~~l~~~l~~------~~~lv~~~~~~n~tG~~~~---~~~I~~l~~~~~~~~ivD~a~~~---g 180 (353)
T TIGR03235 115 VTYLPVDE--SGRIDVDELADAIRP------DTLLVSIMHVNNETGSIQP---IREIAEVLEAHEAFFHVDAAQVV---G 180 (353)
T ss_pred EEEEccCC--CCcCCHHHHHHhCCC------CCEEEEEEcccCCceeccC---HHHHHHHHHHcCCEEEEEchhhc---C
Confidence 99999874 457899999998753 6899999999999999999 78888899999999999999863 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHH-HHHh---------hhcCCCChHHHHH
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC-ARKM---------SSFGLVSSQTQHL 317 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~-~~~~---------~~~~~~s~~~q~~ 317 (483)
. .+ .++. ..+..+++.|.+|.+|.+| +|+++..++.+... .... ...+..+.....+
T Consensus 181 ~-~~-~~~~---------~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 247 (353)
T TIGR03235 181 K-IT-VDLS---------ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVG 247 (353)
T ss_pred C-cc-cccc---------ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHH
Confidence 2 11 1211 1234567779999887566 89998865432111 1100 0112233344444
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce---EEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG---LFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g---~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
+.+++.. +.+..+...++++++++++.+.|.+.|+++..+... ..+.+.++. .+ ..++...| ++ +
T Consensus 248 l~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~-~~------~~~v~~~L-~~-~ 315 (353)
T TIGR03235 248 MGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSIDG-VN------SEALIVNL-RA-D 315 (353)
T ss_pred HHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeCC-cC------HHHHHHHH-hC-C
Confidence 4444432 223456677888999999999998889887643221 133344442 11 12445555 55 8
Q ss_pred eEeeCCCCCCCCC--CCEEEEEeccCCHHHHHH
Q 011570 395 LNVSPGSSFHCPN--PGWFRVCFANMDDRTMEI 425 (483)
Q Consensus 395 V~v~pg~~f~~~~--~~~iRis~~~~~~e~l~~ 425 (483)
|.|.+|..|.... +.++|.+++ .+++++..
T Consensus 316 i~v~~g~~~~~~~~~~~~~l~~~g-~~~~~~~~ 347 (353)
T TIGR03235 316 AAVSTGSACSSSKYEPSHVLQAMG-LDTDRARG 347 (353)
T ss_pred eEEEchhhcCCCCCCCCHHHHHcC-CCHHHhCc
Confidence 9999999987543 346888887 45555443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=187.45 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=144.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~~G~~~~~v 171 (483)
..+|++.+|++.+ .. +.+++++| +.++..++. ++++||+|+++.|.|+.... .++. .|++++.+
T Consensus 56 ~~~le~~lA~l~g--------~~-~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~-~G~~v~~v 123 (390)
T PRK08064 56 REALEDIIAELEG--------GT-KGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR-FGIEHTFV 123 (390)
T ss_pred HHHHHHHHHHHhC--------CC-CeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH-cCCEEEEE
Confidence 5688888888876 22 45666666 567887775 78999999999999985443 3344 49999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|...... .
T Consensus 124 ~~~-------d~~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~--~- 184 (390)
T PRK08064 124 DMT-------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ--K- 184 (390)
T ss_pred CCC-------CHHHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc--C-
Confidence 753 67888887753 7899999999999999988 778888888999999999999753211 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
++ .+ +..+++.|+||.++ -+|...|++++.++.+.+.++.....+......+.+.. ++.....
T Consensus 185 --~~-~~---------g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l-~~~gl~t--- 248 (390)
T PRK08064 185 --PL-DL---------GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL-VLRGLKT--- 248 (390)
T ss_pred --ch-hh---------CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH-HHcccCc---
Confidence 11 12 34578899999985 34466788877666777766665544323222222222 2232222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 249 -l~~R~~~~~~~a~~la~~L~~~ 270 (390)
T PRK08064 249 -LHVRLEHSSETANKIALYLQEH 270 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455566667777777765
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=186.27 Aligned_cols=281 Identities=15% Similarity=0.157 Sum_probs=181.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH----HHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD----RDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~----~~~~~~~G~~~~~v 171 (483)
..+|++.+|++.+ ....+ ++++++.++..++.++++|||+|+++.++|.... ..+... |++++.+
T Consensus 65 ~~~le~~lA~l~g---------~~~av-~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (389)
T PRK05968 65 VRAFEEMLAKLEG---------AEDAR-GFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRM-GVEVDYV 133 (389)
T ss_pred HHHHHHHHHHHhC---------CCcEE-EECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CceEEEe
Confidence 5789999999876 12344 4556668999999889999999999999998643 334444 9998887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++. ++++|++++|+||++. ..++++|+++|+++|+++|+|++|....+..
T Consensus 134 d~~-------d~~~l~~~i~-------~tklV~ie~pt~~~~~---~~dl~~i~~la~~~gi~vivD~a~a~~~~~~--- 193 (389)
T PRK05968 134 DGR-------DEEAVAKALP-------GAKLLYLESPTSWVFE---LQDVAALAALAKRHGVVTMIDNSWASPVFQR--- 193 (389)
T ss_pred CCC-------CHHHHHHhcc-------cCCEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcchhccC---
Confidence 632 7888888762 6789999987777654 4669999999999999999999997543221
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh--c-CCCChHHHHHHHHhcCChhH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS--F-GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~--~-~~~s~~~q~~~~~~l~~~~~ 327 (483)
++ .+ ...+++.|+||.++.+| ++.|+++++ +.+.+.++.... . +.++++.+..+...|+.
T Consensus 194 --p~-~~---------g~Divv~S~tK~l~g~~~~~gG~i~~~-~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~t--- 257 (389)
T PRK05968 194 --PI-TL---------GVDLVIHSASKYLGGHSDTVAGVVAGS-KEHIARINAEAYPYLGAKLSPFEAWLLLRGLRT--- 257 (389)
T ss_pred --ch-hc---------CCcEEEeeccccccCCCCeEEEEEEEC-HHHHHHHHHHHHHhCCCCCChHHHHHHHcccCc---
Confidence 11 11 23477889999998655 688998874 455544443221 2 23555555555444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-Ccee-ecC-----------CceEEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV-GIGC-LKS-----------NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~-~~~-----------~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
+..+.++..++...+.+.|+++ ++.. ..| ..|-.+.+++.... ...+|+..|- ..+
T Consensus 258 ----l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~------~~~~f~~~L~-~~~ 326 (389)
T PRK05968 258 ----LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGI------DVRAFADALK-LFR 326 (389)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHH------HHHHHHHhCC-ccE
Confidence 2233333455567777888776 5533 322 11225556665321 2336666664 346
Q ss_pred eEeeCCCCCC------------C---------CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 395 LNVSPGSSFH------------C---------PNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 395 V~v~pg~~f~------------~---------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.++-|..+. . -.++.+|+|++. |+.+.+++.|++++++.
T Consensus 327 ~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl---E~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 327 LGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL---EGTEALWADLEQALAAA 387 (389)
T ss_pred EecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHHh
Confidence 6666555443 0 014689999995 44566667777776654
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=187.19 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=195.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChH-HHHhhhcCcEEE--
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFD-RDLRWRTGVQLV-- 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~-~~~~~~~G~~~~-- 169 (483)
..++++++|+.+.. .++ .+++++++++++..++.... .++++|++.+++|.+.. ..+.. .|.+..
T Consensus 68 ~~~~~~~la~~l~~--------~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~-~~~~~~~~ 138 (375)
T PRK04260 68 LNSLQEEVAQKLIG--------DKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSA-TGQDKIKD 138 (375)
T ss_pred CCHHHHHHHHHHhc--------CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhc-cCCcccCC
Confidence 57788999987752 233 46889999999998887652 34578899888887532 33322 122111
Q ss_pred -------EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 170 -------PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 170 -------~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.++.. . ..|++.+++.+.+ ++.+|++.+++|++|.+. +.+.++++.++|+++|+++|+||+|
T Consensus 139 ~~~~~~~~~~~~---~-~~dl~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~ 208 (375)
T PRK04260 139 GFGDGVPHFSYA---I-FNDLNSVKALVNK------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQ 208 (375)
T ss_pred CCCCCCCCeEEe---C-CCCHHHHHHhcCC------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 01100 0 1378888887742 678889999999999975 4677999999999999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIA 319 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~ 319 (483)
.++...+ .+.+...... .++ +.||||+++ +|+|+||++++ +.+.+.+.... ..+..+++++.++.
T Consensus 209 ~g~g~~g--~~~~~~~~~~-----~pd----i~t~sK~l~-~G~~ig~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~ 275 (375)
T PRK04260 209 TGMGRTG--KLYAFEHYGI-----EPD----IFTLAKGLA-NGVPVGAMLAK-SSLGGAFGYGSHGSTFGGNKLSMAAAS 275 (375)
T ss_pred hCCCccc--chhhhHhhCC-----CCC----EEEeccccc-CCcceEEEEEc-HHHHhhcCCCCCCCCCCcCHHHHHHHH
Confidence 8743322 2222111111 223 338999998 89999999995 55555543211 12345788888888
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS 398 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 398 (483)
+++..... .++.++.++..+..++.+.+.+.+.+ +.... ..|+++|++++.. ...+.+.+. ++||.+.
T Consensus 276 a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~--------~~~~~~~l~-~~Gi~v~ 344 (375)
T PRK04260 276 ATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTAD--------LSQLVEAAR-DKGLIVL 344 (375)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecCc--------HHHHHHHHH-hCCCEEe
Confidence 88865432 34566666777777777877777664 33233 3678999998431 225666666 4699998
Q ss_pred CCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 399 PGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 399 pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
|+ +.+.+|+++.. .+++++++++++|+++
T Consensus 345 ~~------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 345 TA------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred cC------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 65 23679999944 6999999999999875
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=183.59 Aligned_cols=291 Identities=15% Similarity=0.155 Sum_probs=189.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh--------------cCCCCeEEEeCCCCcChHHHHh
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL--------------ADPGDAFLVPTPYYPGFDRDLR 161 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l--------------~~~gd~Vlv~~P~y~~~~~~~~ 161 (483)
+.+|.+++|+|++ .+..++.+.+..+...++.+| .+++|.|++..-+|......++
T Consensus 149 h~~LE~~LA~f~g----------~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ 218 (476)
T PLN02955 149 HRLLESSLADLKK----------KEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVR 218 (476)
T ss_pred HHHHHHHHHHHHC----------CCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHH
Confidence 5789999999986 344455555555555555555 3567788888889998888877
Q ss_pred hhc---CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 162 WRT---GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 162 ~~~---G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
... +++++.++. -|++.|++.++... .+.+.|++..--++.|.+.+ +.+|.++|++||.++|+|
T Consensus 219 ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~~---~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~ga~LiVD 285 (476)
T PLN02955 219 LAERQGNVEVFVYRH-------CDMYHLNSLLSSCK---MKRKVVVTDSLFSMDGDFAP---MEELSQLRKKYGFLLVID 285 (476)
T ss_pred hccccCCceEEEeCC-------CCHHHHHHHHHhCC---CCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCcEEEEc
Confidence 531 466666663 37899999987642 12344444444789999999 777788888999999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c--CCCChHHH
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F--GLVSSQTQ 315 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~--~~~s~~~q 315 (483)
|+|+.++++. .. ........ ...+.+|+++||||++|..| ||+++ ++.+.+.++.... + ....++..
T Consensus 286 EAH~~Gv~G~-~G-~G~~e~~g----~~~di~ii~~TLsKA~G~~G---Gfi~g-s~~~~~~l~~~~~~~ifStalpp~~ 355 (476)
T PLN02955 286 DAHGTFVCGE-NG-GGVAEEFN----CEADVDLCVGTLSKAAGCHG---GFIAC-SKKWKQLIQSRGRSFIFSTAIPVPM 355 (476)
T ss_pred ccccCceecC-CC-CcHHHHhC----CCCCCcEEEEeCccchhccC---ceeec-HHHHHHHHHHhCCCCeecccccHHH
Confidence 9999776664 22 23333221 02467899999999998777 99998 4556666654332 2 22222222
Q ss_pred H-HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 316 H-LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 316 ~-~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
. ++.+.+. .++. ...+++++.++.+++.+. .|+.+ +...+.+.+... .....+++.|++ .|
T Consensus 356 aaa~laal~---l~~~-~~~~r~~L~~n~~~fr~~---~G~~~----~sPI~pI~ig~~------~~a~~~~~~L~~-~G 417 (476)
T PLN02955 356 AAAAYAAVV---VARK-EKWRRKAIWERVKEFKAL---SGVDI----SSPIISLVVGNQ------EKALKASRYLLK-SG 417 (476)
T ss_pred HHHHHHHHH---HHhc-CHHHHHHHHHHHHHHHHh---cCCCC----CCCEEEEEeCCH------HHHHHHHHHHHH-CC
Confidence 2 2222221 1111 123456677777777763 36553 134555555432 224467777775 59
Q ss_pred eEeeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 395 LNVSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 395 V~v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
|.+.+......+ +...+||++.. .++++++.+++.|.+++...
T Consensus 418 i~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~~~ 462 (476)
T PLN02955 418 FHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLDFD 462 (476)
T ss_pred CEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHhhh
Confidence 999887665543 33579999966 69999999999998875544
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=185.36 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=187.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh-cCc
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR-TGV 166 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-~G~ 166 (483)
.+|+.+ ...+|++++|++.+ .+++++++|+++++.+++. ++++||+|+++.+.|+.....+... ...
T Consensus 49 ~R~~~p-~~~~le~~lA~leg----------~~~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~ 116 (364)
T PRK07269 49 TRTKNP-TRAKLEETLAAIES----------ADYALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG 116 (364)
T ss_pred eCCCCc-cHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC
Confidence 345544 36899999999964 5799999999999999984 6799999999999998765543322 011
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
.+ .+ .|..|++.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+
T Consensus 117 ~~-~~------~~~~d~~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~ 180 (364)
T PRK07269 117 RF-HF------TYANTEEELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY 180 (364)
T ss_pred cE-EE------EecCCHHHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc
Confidence 11 11 234688999998864 7899999999999999987 88889999999999999999854322
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc-C-CCChHHHHHHHHhcC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF-G-LVSSQTQHLIATMLS 323 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~-~-~~s~~~q~~~~~~l~ 323 (483)
. . ++ .. ...+++.|++|.++-.| .=.|+++++++.+.+.+...... + .++++....+..-|+
T Consensus 181 ~--~---pl-~~---------gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~ 245 (364)
T PRK07269 181 Q--R---PI-EL---------GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK 245 (364)
T ss_pred C--C---ch-hh---------CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC
Confidence 1 1 11 11 33478899999986323 23578888666666655443332 2 345555555545554
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc-eee-cCCceEEEeeecCchhhccChHHHH---HHHHHHHHhcCeEe
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQV-GI-GCL-KSNAGLFLWMDLHHLLKEQTYEAEM---ALWRVIINEVKLNV 397 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi-~~~-~~~~g~f~~~~l~~~~~~~~~~~~~---~~~~~Ll~~~gV~v 397 (483)
. +..+.++..++...+.+.|+++ ++ .+. |+.||++. +.+........+.+.. .++..|.....+.+
T Consensus 246 t-------L~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~s-f~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~ 317 (364)
T PRK07269 246 T-------LSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMIS-FKVADETRIPHILNSLKVFTFAESLGGVESLIT 317 (364)
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEE-EEECCHHHHHHHHHhCCcceEccCCCCcCeEee
Confidence 4 3444555567777788888876 33 344 67777554 4443210000000000 11222222335556
Q ss_pred eCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 398 SPGSSFHCP-----------NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 398 ~pg~~f~~~-----------~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.|++.+... .++.||||+|. |+.+.+++.|.++++
T Consensus 318 ~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl---E~~~dli~dl~~al~ 363 (364)
T PRK07269 318 YPTTQTHADIPAEVRHSYGLTDDLLRLSIGI---EDARDLIADLKQALE 363 (364)
T ss_pred CCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHhc
Confidence 665443221 24679999984 456667777776653
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=183.19 Aligned_cols=291 Identities=16% Similarity=0.184 Sum_probs=179.1
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
-+.++++.+|++++ .++.+++++|+. ++..+...+.++||.|++..-.|......++.. ....+.++
T Consensus 57 ~~~~~e~~la~~~~---------~~~~l~~~sG~~-a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~-~~~~~~~~-- 123 (370)
T PRK05937 57 LLDDLEHKIAHFHG---------APEAFIVPSGYM-ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVI-SGWHQSFR-- 123 (370)
T ss_pred HHHHHHHHHHHHhC---------CCeEEEECChHH-HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHc-CCceEEec--
Confidence 36788999999886 234477777765 444555666778898888888888888877765 33333343
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
..|+++|++.++.....++++++|++++++|+||.+.| +++|.++|+++|+++++||+|+...+.. . ...
T Consensus 124 -----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~-~-g~g 193 (370)
T PRK05937 124 -----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGD-D-GKG 193 (370)
T ss_pred -----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCC-C-CCc
Confidence 25899999998754322234567788999999999999 7788888999999999999998544433 1 111
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH-Hhhhc---CCCChHHHHHHHHhcCChhHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-KMSSF---GLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~-~~~~~---~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
...... ..+..+++.||||.+|..|. | +++. +.+...+. ...++ ...+++...++.+++. ++.+
T Consensus 194 ~~~~~~-----~~~~~~~~~tlsK~~g~~G~--~-vl~~-~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~---~l~~ 261 (370)
T PRK05937 194 FCHSLG-----YENFYAVLVTYSKALGSMGA--A-LLSS-SEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYD---FLSQ 261 (370)
T ss_pred hHHhhC-----CCCCcEEEEechhhhhcCce--E-EEcC-HHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHH---HHHh
Confidence 111111 11223568899999997773 3 4443 33333322 22222 2244444443333332 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
.....++++.+.++++.+.|...+. + ....+.++.. . ...+.+.| .++||.+.... .+..++
T Consensus 262 ~~~~~~~~l~~l~~~l~~~l~~~~~------~-~~~~i~~~~~------~-~~~~~~~L-~~~gi~v~~~~---~~~~~~ 323 (370)
T PRK05937 262 EGELARKQLFRLKEYFAQKFSSAAP------G-CVQPIFLPGI------S-EQELYSKL-VETGIRVGVVC---FPTGPF 323 (370)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCC------C-CEEEEEeCCh------h-HHHHHHHH-HHCCeeEEeeC---CCCCCE
Confidence 1223445667777777777754321 1 1112233321 1 22455555 45699887422 123468
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+|++++. .++++++.+++.|++++++..
T Consensus 324 iRis~~~~~t~edid~l~~~L~~~~~~~~ 352 (370)
T PRK05937 324 LRVNLHAFNTEDEVDILVSVLATYLEKYQ 352 (370)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999976 599999999999999887654
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=181.23 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=154.0
Q ss_pred cCCCC--CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hh
Q 011570 89 IFQDY--HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RW 162 (483)
Q Consensus 89 ~Y~~~--~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~ 162 (483)
.|+.. ++...|+++||++.+ .+++++++|+++|+..++.+++++||+|++++|.|+++...+ ..
T Consensus 54 ~Y~r~~npt~~~Le~~iA~le~----------~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 54 FYGRRGTPTHFAFQAAIVELEG----------GAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred eecCCCCchHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 46553 235699999998854 357899999999999999999999999999999998776543 33
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
.|+++..++.+ +.+.+++++.+ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+
T Consensus 124 -~Gi~v~~v~~~-------~~e~l~~~l~~------~TklV~lespsNPtg~v~d---l~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 124 -FGIETTYYDPM-------IGEGIRELIRP------NTKVLFLESPGSITMEVQD---VPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred -cceEEEEECCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCcc
Confidence 38887766532 45677777753 7999999999999988755 8999999999999999999997
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHHhh-hcC-CCChHHHHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARKMS-SFG-LVSSQTQHLIA 319 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~~~-~~~-~~s~~~q~~~~ 319 (483)
... .. . ++ ..+..+++.|.+|.+ |-.++..|+++. ++.+.+.+.... ..+ .+++.....+.
T Consensus 187 ~p~-~~-~---Pl----------~~GaDivv~S~tK~l~Gh~d~~~G~~~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~ 250 (394)
T PRK09028 187 SPI-NS-R---PF----------EMGVDISIQAATKYIVGHSDVMLGTATA-NEKHWDQLREHSYLMGQCTSPDDVYLAM 250 (394)
T ss_pred ccc-cC-C---cc----------ccCceEEEEeCCeEecCCCCEEEEEEEC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 432 11 1 11 225568899999998 445578888776 444444333222 222 34555544444
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.-++. +.-+.++..++...+.+.|+++
T Consensus 251 rgl~T-------L~lR~~~~~~na~~la~~L~~~ 277 (394)
T PRK09028 251 RGLRT-------LGVRLAQHEKNALKVANWLATR 277 (394)
T ss_pred cccCc-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 44443 3445556677778888888887
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=184.52 Aligned_cols=164 Identities=20% Similarity=0.225 Sum_probs=130.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----Hhhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~ 163 (483)
.+|+.+. ..+|++.+|++++ .+..++++++++++..++.+++++||+|+++.|.|++.... +...
T Consensus 52 sr~~~p~-~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 120 (418)
T TIGR01326 52 SRLMNPT-TDVLEQRIAALEG----------GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRL 120 (418)
T ss_pred ECCCChh-HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHc
Confidence 3454433 5788889988875 24678899999999999999999999999999999654433 3444
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|++++.++.+ |++.+++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+.
T Consensus 121 -G~~v~~v~~~-------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~ 183 (418)
T TIGR01326 121 -GIEVRFVDPD-------DPEEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFAT 183 (418)
T ss_pred -CcEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCch
Confidence 9999888742 78889888854 7899999999999999998 77888889999999999999964
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecC
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN 294 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~ 294 (483)
.. .. . + + ..+.++++.|+||.+|.+|+|+||+++++
T Consensus 184 ~~-~~-~---~---l-------~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 184 PY-LC-R---P---I-------DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred hh-cC-C---c---h-------hcCCeEEEECccccccCCccceEEEEEec
Confidence 21 11 1 1 1 12467899999999998999999999854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=187.89 Aligned_cols=286 Identities=15% Similarity=0.115 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC---------CC-CeEEEeCCCCcChHHHHhhhcC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD---------PG-DAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~---------~g-d~Vlv~~P~y~~~~~~~~~~~G 165 (483)
..+|.+.++++.+ .+.+++++++++|+..++.++.. +| +.|++..-+|.+....+... +
T Consensus 85 ~~~l~~~l~~~~~----------~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~-~ 153 (401)
T PRK00854 85 LAPLYEELAALTG----------SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGF-S 153 (401)
T ss_pred HHHHHHHHHhhCC----------CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhc-c
Confidence 3455555555432 35899999999999999988742 23 67888877776543322221 1
Q ss_pred c-------------EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCH-HHHHHHHHHHhhc
Q 011570 166 V-------------QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDR-ETLKDIVSFINEK 231 (483)
Q Consensus 166 ~-------------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~-~~l~~i~~~a~~~ 231 (483)
. .+..++. .|++.+++++.+ ++++|++++|+||+|.+++. +.+++|.++|++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~ 220 (401)
T PRK00854 154 TDPDARGGFGPFTPGFRVVPF-------GDAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN 220 (401)
T ss_pred CCccccccCCCCCCCeEEeCC-------CCHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 1 1222221 378999988853 78999999999999999974 4699999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGL 309 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~ 309 (483)
|+++|+||+|.++.+.+ . +... .... . .++.+ .+||.++...+|+||++++ +++.+.+..... .+.
T Consensus 221 gi~lI~DEv~~g~g~~g-~-~~~~-~~~g-~---~~D~~----~~~K~l~gg~~~ig~v~~~-~~~~~~l~~~~~~~t~~ 288 (401)
T PRK00854 221 NVTLILDEIQTGLGRTG-K-LLAE-EHEG-I---EADVT----LIGKALSGGFYPVSAVLSN-SEVLGVLKPGQHGSTFG 288 (401)
T ss_pred CCEEEEechhhCCCCCc-h-HhHH-hhcC-C---CCCEE----EecccccCCccCeEEEEEc-HHHHhcccCCCCCCCCC
Confidence 99999999998643332 1 1111 1111 0 12322 2479997333799999994 555554432211 123
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCce---eecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIG---CLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~---~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+++.+.++.+.|+.. ++ ....+.++++.+++.+.|++++.. ...+.|. ++.+.+... . ....+++
T Consensus 289 ~~~~~~aa~~a~L~~l---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~-~~~i~~~~~--~---~~~~~~~ 357 (401)
T PRK00854 289 GNPLACAVARAALKVL---TE--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGL-MLAVELEPE--A---GGARQYC 357 (401)
T ss_pred cCHHHHHHHHHHHHHH---HH--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccce-EEEEEEecC--c---hhHHHHH
Confidence 5777887777776431 11 224566677778888888876432 2234454 444444221 0 1234778
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
+.|++ +||.+.+. ..+++|+++.. .+++++++++++|++++.
T Consensus 358 ~~L~~-~GV~v~~~------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 358 EALKE-RGLLAKDT------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred HHHHH-CCeEEecC------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 88876 59998653 23689999854 599999999999998764
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=183.48 Aligned_cols=285 Identities=14% Similarity=0.072 Sum_probs=176.1
Q ss_pred CcEEEeCChhHHHHHHHHHhc----------CCCCeEEEeCCCCcChHHHHhhhcCcEEEE---eecCCC--CCcccCHH
Q 011570 120 DRIVMSGGATGAHETVAFCLA----------DPGDAFLVPTPYYPGFDRDLRWRTGVQLVP---VVCDSS--NDFKVTME 184 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~---v~~~~~--~~~~~d~~ 184 (483)
+.+++++++++++..++..+. ..++.|++.+-+|.+.........+..... .+.... .-...|++
T Consensus 89 ~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (400)
T PTZ00125 89 DKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVE 168 (400)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHH
Confidence 688999999999999998763 134778888888766543322221211100 010000 00013789
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 185 ALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 185 ~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
.+++.++. .++++|++..++||||.+++ .+.+++|.++|++||+++|+||+|.++.+.+ .. ... .... .
T Consensus 169 ~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G-~~-~~~-~~~~-~- 238 (400)
T PTZ00125 169 ALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KL-LAH-DHEG-V- 238 (400)
T ss_pred HHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hh-hHH-HhcC-C-
Confidence 99988852 37889988888999999986 5569999999999999999999997643333 21 111 1111 0
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAE 341 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~ 341 (483)
.++ ++ ++||.++.+++|+||++++ +.+.+.+.... .....+++++.++.+.++.-. +. ...+++++
T Consensus 239 --~pd-~~---~~sK~l~~g~~~ig~v~~~-~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~--~~---~~~~~~~~ 306 (400)
T PTZ00125 239 --KPD-IV---LLGKALSGGLYPISAVLAN-DDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLK--EE---KLAENAQR 306 (400)
T ss_pred --CCC-EE---EEcccccCCCcCcEEEEEc-HHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--hc---CHHHHHHH
Confidence 122 22 5789998433599999994 55555543221 123356777777665543210 00 11122233
Q ss_pred HHHHHHHhhhc----CCc-eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec
Q 011570 342 RHKAFTWGLSQ----VGI-GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA 416 (483)
Q Consensus 342 ~~~~l~~~L~~----~gi-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~ 416 (483)
+.+++.+.|.+ .++ ....+ .|.++|+.++... . ....+++..|+ ++||.+.|+. .+++||++.
T Consensus 307 ~~~~l~~~l~~l~~~~~~~~~~~~-~g~~~~v~~~~~~---~-~~~~~~~~~l~-~~Gv~v~~~~------~~~lRi~~~ 374 (400)
T PTZ00125 307 LGEVFRDGLKELLKKSPWVKEIRG-KGLLNAIVFDHSD---G-VNAWDLCLKLK-ENGLLAKPTH------DNIIRFAPP 374 (400)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEec-ccEEEEEEEccCc---c-hHHHHHHHHHH-HCCeEEeecC------CCEEEEECC
Confidence 33444444433 333 22333 4678888876311 1 12346778877 5699998752 468999975
Q ss_pred c-CCHHHHHHHHHHHHHHHHHhh
Q 011570 417 N-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 417 ~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
. .+++++++++++|.+++++..
T Consensus 375 ~~~~~~~i~~~l~~l~~~l~~~~ 397 (400)
T PTZ00125 375 LVITKEQLDQALEIIKKVLKSFD 397 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Confidence 4 699999999999999988764
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=183.41 Aligned_cols=166 Identities=20% Similarity=0.265 Sum_probs=131.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
+.++++.+|++++ ..+.+++|+|+++++..++.++++|||+|+++.|+|..+...+... |++++.++.+.
T Consensus 61 i~~~~~~~A~~~g---------a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~-g~~~~~v~~~~ 130 (294)
T cd00615 61 IKEAQELAARAFG---------AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLS-GAVPVYLKPER 130 (294)
T ss_pred HHHHHHHHHHHhC---------CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHC-CCEEEEecCcc
Confidence 6788999999876 2345666999999999999999999999999999999988888875 99999887754
Q ss_pred CCC----cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-ccCCCC
Q 011570 176 SND----FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VFTKES 250 (483)
Q Consensus 176 ~~~----~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~~~~~ 250 (483)
+.+ ..+|++.+++++++ ++++++|++++| ||||.+++ +++|+++|+++|+++|+||+|+.. .|.+ .
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~-~ 201 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHP-I 201 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCc-c
Confidence 433 36899999999864 246899999999 79999998 788999999999999999999753 2332 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEE
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIY 291 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li 291 (483)
...+.. ..+.++++.|++|++ +|++.|+++
T Consensus 202 ~~~~~~---------~~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 202 LPSSAA---------MAGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred cCcchh---------hcCCcEEEEchhccc--chHhHHHHH
Confidence 111211 236678899999975 788876544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=175.46 Aligned_cols=299 Identities=19% Similarity=0.230 Sum_probs=214.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH--hcC----CCCeEEEeCCCCcChHHHHhhh--cCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC--LAD----PGDAFLVPTPYYPGFDRDLRWR--TGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~--l~~----~gd~Vlv~~P~y~~~~~~~~~~--~G~~ 167 (483)
..+.|+.||+.++ +++++|++|+|++|+.++++.. ... .|.+|+++.--|+...+.++.+ .|.+
T Consensus 46 ve~AR~~iA~llg--------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~ 117 (386)
T COG1104 46 VEEAREQIAKLLG--------ADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFE 117 (386)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCe
Confidence 5677888888877 6789999999999999999876 222 4789999999999998888765 4999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+.++|++.+| .+|+++|+++|++ ++.+|-+...||-||++-| +++|.++|+++++++++|-+.+ ++
T Consensus 118 Vtyl~V~~~G--~v~~e~L~~al~~------~T~LVSim~aNnE~G~IQp---I~ei~~i~k~~~i~fHvDAvQa---~G 183 (386)
T COG1104 118 VTYLPVDSNG--LVDLEQLEEALRP------DTILVSIMHANNETGTIQP---IAEIGEICKERGILFHVDAVQA---VG 183 (386)
T ss_pred EEEeCCCCCC--eEcHHHHHHhcCC------CceEEEEEecccCeeeccc---HHHHHHHHHHcCCeEEEehhhh---cC
Confidence 9999998754 8999999999985 7889999999999999999 8888899999999999999987 44
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH-HHH-----HhhhcCCCChHHHHHHHHh
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS-CAR-----KMSSFGLVSSQTQHLIATM 321 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~-~~~-----~~~~~~~~s~~~q~~~~~~ 321 (483)
. -+ ..+..+ ...+...|-+|..|..| +|.++..+..-.. .+. .-...++.+.+...+.+.+
T Consensus 184 k-ip-i~~~~~---------~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A 250 (386)
T COG1104 184 K-IP-IDLEEL---------GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKA 250 (386)
T ss_pred c-ee-cccccc---------CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHH
Confidence 3 22 222221 23345568899999888 8988874322111 110 0011234455555555555
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CceeecC---CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
++.. .+.++....++...|+++.+.|.+. ++.+... .-...+.+.++.. . .+.....|+.+||.
T Consensus 251 ~~~a---~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-~-------gE~ll~~L~~~gI~ 319 (386)
T COG1104 251 AEIA---VEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-E-------GESLLLALDLAGIA 319 (386)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC-c-------HHHHHHhccccCeE
Confidence 4321 2334556677788889999999865 3333321 1222344445531 1 13344456677999
Q ss_pred eeCCCCCCCCC-----------------CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 397 VSPGSSFHCPN-----------------PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 397 v~pg~~f~~~~-----------------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+..|+.|.... .+.+||||+. .++++++.+++.|++++++.++.
T Consensus 320 vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~ 381 (386)
T COG1104 320 VSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLREL 381 (386)
T ss_pred EeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999987531 2569999987 59999999999999999998765
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-19 Score=179.26 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=124.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|.+.+|++.+ .+..++++|+++++..++.+++++||+|+++.+.|+..... ++. .|++++.+
T Consensus 66 ~~~Le~~lA~leg----------~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~-~Gv~v~~v 134 (431)
T PRK08248 66 TDVFEKRIAALEG----------GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK-LGITVKFV 134 (431)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh-CCEEEEEE
Confidence 4678888888764 35778899999999999999999999999999999764433 344 49999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.. +..
T Consensus 135 d~-------~d~e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~-~~~--- 194 (431)
T PRK08248 135 DP-------SDPENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASP-YLL--- 194 (431)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCcc-ccC---
Confidence 75 278889888853 7899999999999999999 678888899999999999998631 111
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY 293 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~ 293 (483)
.++ . .+..+++.|++|.+|.+|.++|++++.
T Consensus 195 -~pl-~---------~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 195 -RPI-E---------HGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred -Chh-H---------cCCCEEEEcCccccCCCCCceEEEEEe
Confidence 121 1 255688899999999999999988773
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-19 Score=183.78 Aligned_cols=318 Identities=14% Similarity=0.169 Sum_probs=200.1
Q ss_pred cccC---CCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHH--HH-HhcCCCC----eEEEeCCCCcCh
Q 011570 87 IAIF---QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETV--AF-CLADPGD----AFLVPTPYYPGF 156 (483)
Q Consensus 87 ~~~Y---~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~--~~-~l~~~gd----~Vlv~~P~y~~~ 156 (483)
.+.| +...|..++++++++++.+.+| ++...+..++|+++.+..+ +. .+.++|| +|+++.|+|+.+
T Consensus 99 ~tpYq~e~~sqG~lel~~~~~~~la~l~G----~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~ 174 (481)
T PRK04366 99 LHPLQPEETVQGALELMYELQEWLKEITG----MDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTN 174 (481)
T ss_pred CCCCCChhhhhHHHHHHHHHHHHHHHHhC----CCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhH
Confidence 3456 3456888999999999999887 4445566667766665533 22 3467776 999999999999
Q ss_pred HHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEE
Q 011570 157 DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLV 236 (483)
Q Consensus 157 ~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI 236 (483)
...+... |++++.++++. ++.+|++.|++++.+ ++++|++++|| |||.+ .+++++|+++|+++|++++
T Consensus 175 ~~~~~~~-G~~vv~v~~~~--~~~~D~e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~gal~i 242 (481)
T PRK04366 175 PASAAMA-GFKVVEIPSNE--DGLVDLEALKAAVGE------DTAALMLTNPN-TLGLF--ERNILEIAEIVHEAGGLLY 242 (481)
T ss_pred HHHHHHc-CCEEEEeecCC--CCCcCHHHHHhhccc------CCeEEEEeCCC-Ccccc--chHHHHHHHHHHHcCCEEE
Confidence 9888775 99999999863 568999999998854 78999999998 99964 3469999999999999999
Q ss_pred EccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC----CceEEEEEecChHHHHHHHHh------hh
Q 011570 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP----GFRVGIIYSYNDQVVSCARKM------SS 306 (483)
Q Consensus 237 ~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~----GlRiG~li~~~~~l~~~~~~~------~~ 306 (483)
+|.++....... .+.. ..+..++++|.+|.+|.| |--+|++.+. +.+.+.+... ..
T Consensus 243 VD~a~~~~~~g~----~~~~---------~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~-~~~~~~lp~~~v~~~g~~ 308 (481)
T PRK04366 243 YDGANLNAILGK----ARPG---------DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVK-EELAPFLPVPVVEKDGDR 308 (481)
T ss_pred EEecChhhhccc----CCcc---------ccCCCEEEEechhhcCCCCCCCCCCeeeeeeh-hhhHhhCCCCeeeccCCc
Confidence 999985211111 1111 224567888999998644 4557888874 3333322100 00
Q ss_pred c---------------CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeec
Q 011570 307 F---------------GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDL 370 (483)
Q Consensus 307 ~---------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l 370 (483)
+ +..+.....++..++...+ .+-+++..++...+.+++.+.|.++ .+.+..+...- +.++.
T Consensus 309 ~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G--~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~~~~~~~-~~~~~ 385 (481)
T PRK04366 309 YRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG--AEGLREVSEDAVLNANYLKARLKDIYDLPYDRPCMHE-FVLSG 385 (481)
T ss_pred eeecccccccCCCcccccCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhhCcccCCCCeeEE-EEEEC
Confidence 0 0000111111111111111 1223444455566678888888875 33221111111 22333
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhcc
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAK 441 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~ 441 (483)
+.. ..... ...++.++|.+ +||.+. +..|.....+.+|+++.. .++++++.+++.|+++.++..++.
T Consensus 386 ~~~-~~~g~-~~~~v~~~L~~-~Gi~~~-~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~~~ 453 (481)
T PRK04366 386 KKL-KETGV-RTLDIAKRLLD-YGFHPP-TIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAKENP 453 (481)
T ss_pred ccc-cccCC-CHHHHHHHHHH-CCccCC-ccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 211 00011 13467777775 598755 222221125689999976 599999999999999988776653
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=184.99 Aligned_cols=281 Identities=19% Similarity=0.190 Sum_probs=187.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcChHHHHhh--hcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPGFDRDLRW--RTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~~~~~~--~~G~~~~ 169 (483)
..++|+.++++++ .++++|++|+|++++++.++..+ .++||+|++....|+.+...+.. ..|++++
T Consensus 45 ~~~~r~~la~~~g--------~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~ 116 (364)
T PLN02651 45 VEKARAQVAALIG--------ADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT 116 (364)
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE
Confidence 3566777777765 56789999999999988776554 47899999999888765443322 2489999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ ++.+|++.+++++++ +++++++++++||||.+.+ +++|.++|+++|+++++|.+++. +.
T Consensus 117 ~v~~~~--~~~~d~~~l~~~i~~------~t~lv~v~~~~n~tG~~~~---l~~I~~~~~~~g~~~~vD~a~~~---g~- 181 (364)
T PLN02651 117 YLPVKS--DGLVDLDELAAAIRP------DTALVSVMAVNNEIGVIQP---VEEIGELCREKKVLFHTDAAQAV---GK- 181 (364)
T ss_pred EEccCC--CCcCCHHHHHHhcCC------CcEEEEEECCCCCceeccc---HHHHHHHHHHcCCEEEEEcchhh---CC-
Confidence 998864 457899999999864 7899999999999999999 77888999999999999999973 22
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--------hhcCCCChHHHHHHHHh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--------SSFGLVSSQTQHLIATM 321 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--------~~~~~~s~~~q~~~~~~ 321 (483)
-+ ..+. ..+..+++.|..|.+|. ..+|+++..++.+....... ...++.+.....++.++
T Consensus 182 ~~-~~~~---------~~~~D~~~~s~hK~~gp--~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~a 249 (364)
T PLN02651 182 IP-VDVD---------DLGVDLMSISGHKIYGP--KGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAA 249 (364)
T ss_pred cc-cCcc---------cCCCCEEEechhhhCCC--CceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHH
Confidence 11 2221 12446778899996543 34899988553222110000 01233444444444444
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-CceeecCCc-----eEEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGCLKSNA-----GLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~~~~~~-----g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
++- +.+..+..+++.++.++++.+.|.+ + |+++..+.. ...+.+.++. .+ ..++...|. +
T Consensus 250 l~~---~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~-~~------~~~~~~~L~-~-- 316 (364)
T PLN02651 250 CEL---AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY-VE------GESLLMGLK-E-- 316 (364)
T ss_pred HHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC-CC------HHHHHHHhC-C--
Confidence 432 2223455567777788888888875 3 787775411 1244455542 11 225566553 3
Q ss_pred eEeeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHH
Q 011570 395 LNVSPGSSFHCP-----------------NPGWFRVCFAN-MDDRTME 424 (483)
Q Consensus 395 V~v~pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~ 424 (483)
|.++.|+.|... ..+.+|+|++. .|+++++
T Consensus 317 i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 317 VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 999999876443 13689999987 4777764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=176.79 Aligned_cols=208 Identities=19% Similarity=0.268 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|++.+|++.+ ....+++++| +.++..++ .++++||+|+++.|+|+..... +.. .|++++.+
T Consensus 52 ~~~Le~~lA~l~g---------~~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~-~G~~v~~v 119 (377)
T PRK07671 52 RAALEELIAVLEG---------GHAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNR-FGIEHTFV 119 (377)
T ss_pred HHHHHHHHHHHhC---------CCceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhc-CCeEEEEE
Confidence 5788888888876 2345666666 56777665 5789999999999999854432 233 38888887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|....+..
T Consensus 120 ~~-------~d~~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~--- 180 (377)
T PRK07671 120 DT-------SNLEEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQS--- 180 (377)
T ss_pred CC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccCC---
Confidence 63 378899988863 7899999999999999987 7788888899999999999997532221
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~ 328 (483)
++ .+ ...+++.|+||.+|-++ .-.|++++.++.+.+.+...+.. ...++.....+..-+. .
T Consensus 181 --p~-~~---------g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~---t- 244 (377)
T PRK07671 181 --PI-SL---------GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLK---T- 244 (377)
T ss_pred --hh-hh---------CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcC---h-
Confidence 11 12 33588999999997443 45677777666676666555544 2234433332222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 245 ---l~~R~~~~~~na~~la~~L~~~ 266 (377)
T PRK07671 245 ---LGIRMEEHETNSRAIAEFLNNH 266 (377)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566677778888888876
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-19 Score=176.80 Aligned_cols=289 Identities=18% Similarity=0.208 Sum_probs=183.9
Q ss_pred cCCCCCC--cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hh
Q 011570 89 IFQDYHG--LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RW 162 (483)
Q Consensus 89 ~Y~~~~g--~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~ 162 (483)
.|....+ ..+|++.++++++ .++++++++++.++..++. ++++||+|+++.+.|+.+...+ ..
T Consensus 40 ~Y~r~~~p~~~~le~~la~l~g----------~~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 108 (378)
T TIGR01329 40 DYTRSGNPTRTALESLLAKLDK----------ADRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPR 108 (378)
T ss_pred ccCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHH
Confidence 4655421 3455555555543 2566777777789988776 7899999999999998776533 33
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
.|++++.++.. |++.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|.
T Consensus 109 -~G~~v~~vd~~-------d~~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 109 -SGVVVVHVDTT-------DLDKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred -cCcEEEEeCCC-------CHHHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCc
Confidence 49999988752 78889888853 7899999999999999998 8889999999999999999985
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhh-cC-CCChHHHHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSS-FG-LVSSQTQHLIA 319 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~-~~-~~s~~~q~~~~ 319 (483)
.. +.. .++ .+ ...+++.|++|.++- .+++.|++++.++.+.+.+..... .+ ..++.....+.
T Consensus 172 ~~-~~~----~~l-~~---------g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~ 236 (378)
T TIGR01329 172 SP-LLC----NPL-EL---------GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLL 236 (378)
T ss_pred cc-ccC----Chh-hc---------CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence 32 111 122 11 234788999998753 358899999866666555554443 22 23443332222
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc-eeec----------------CCceEEEeeecCchhhccChHH
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GI-GCLK----------------SNAGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi-~~~~----------------~~~g~f~~~~l~~~~~~~~~~~ 381 (483)
.-++. +..+.++..++...+.+.|+++ .+ .+.. ...|-.+.+++.. ...
T Consensus 237 ~~l~t-------l~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~------~~~ 303 (378)
T TIGR01329 237 RGIKT-------LAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGS------VAL 303 (378)
T ss_pred ccCCC-------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECC------HHH
Confidence 22222 2333334455555566666554 22 1111 1122345566621 122
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+|+..| +..++.++-|..... -.++.||||+|. |+.+.+++.|++++++.
T Consensus 304 ~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl---E~~~dl~~dl~~al~~~ 376 (378)
T TIGR01329 304 SKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI---EDVDDLISDLDIAFVTA 376 (378)
T ss_pred HHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHHHHHHHHhc
Confidence 33666666 556777776654321 014689999984 45777777887777643
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-19 Score=180.03 Aligned_cols=296 Identities=15% Similarity=0.109 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---CC------------CCeEEEeCCCCcChHHHHh
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DP------------GDAFLVPTPYYPGFDRDLR 161 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~~------------gd~Vlv~~P~y~~~~~~~~ 161 (483)
.+....+|+.+.+.. ..+.|++++++++++..++.... .. ..+|+....+|.+......
T Consensus 56 ~~~~~~la~~l~~~~------~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~ 129 (382)
T PLN00144 56 TIPQVELAKRLVASS------FADRVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGAL 129 (382)
T ss_pred CHHHHHHHHHHHhcC------CCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHH
Confidence 344556666665421 24689999999999998887542 10 2468999988877654433
Q ss_pred hhcCcEEEE---eecCCCC---CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC--HHHHHHHHHHHhhcCc
Q 011570 162 WRTGVQLVP---VVCDSSN---DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD--RETLKDIVSFINEKNI 233 (483)
Q Consensus 162 ~~~G~~~~~---v~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~--~~~l~~i~~~a~~~~~ 233 (483)
...+-.... .|..... .| -|++.+++.+.. .++++|++..-+|| |.+++ .+.+++|.++|++||+
T Consensus 130 s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~-----~~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~ 202 (382)
T PLN00144 130 ALTSKEQYRTPFEPLMPGVTFVEY-GNLEAARKLIQK-----GKTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGA 202 (382)
T ss_pred hcCCCccccccCCCCCCCeEEeCC-CCHHHHHHhcCC-----CCeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCC
Confidence 321211000 0100000 01 268888887742 35766665544889 44444 4559999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCC
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVS 311 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s 311 (483)
++|+||+|.++...+ . +.+ ..+.. + .++ +.||||.++ +|+|+||++++ +.+.+.+.. ....+..+
T Consensus 203 llI~DEv~tg~gr~g-~-~~~-~~~~~-~---~PD----i~t~sK~l~-~G~pig~v~~~-~~~~~~~~~~~~~~T~~~~ 269 (382)
T PLN00144 203 LLVFDEVQCGLGRTG-Y-LWA-HEAYG-V---EPD----IMTLAKPLA-GGLPIGAVLVT-EKVASAINPGDHGSTFAGG 269 (382)
T ss_pred EEEEechhhCCCccc-h-Hhh-hhhcC-C---CCC----EEEeccccc-CCcceEEEEEc-HHHHhccCCCCCCCCCCCC
Confidence 999999998754443 2 222 11111 1 233 569999998 99999999994 555555432 11223467
Q ss_pred hHHHHHHH---HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 312 SQTQHLIA---TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 312 ~~~q~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
++++.++. .++.++++ .+++++..+.++ +.+.+.+.+.+........|+++|+++.. . ...++..
T Consensus 270 pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~~~~vrg~G~~~~l~l~~--~------~~~~~~~ 337 (382)
T PLN00144 270 PLVCNAALAVLDKISKPGF-LASVAKKGEYLR---ELLRRKLGGNPHVKEVRGVGLLVGIQLDV--P------AGPLVDA 337 (382)
T ss_pred HHHHHHHHHHHHHHhhchH-HHHHHHHHHHHH---HHHHHHHhhCCCceeeecCceEEEEEecC--c------cHHHHHH
Confidence 88888777 55555443 445555555553 34444455543222222378999999831 1 1256666
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++ ++||.+.|+. ..+.+|++++. .+++++++++++|.+++.+
T Consensus 338 ~~-~~Gv~i~~~~-----~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 338 CR-DSGLLVLTAG-----KGDVVRLVPPLVISEAELEQAVEILADCLPA 380 (382)
T ss_pred HH-HCCeEEeecC-----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence 66 5699998872 13689999988 6999999999999999865
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=174.64 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v~ 172 (483)
..|++.+|++.+ .+++++++|+++|+..++.+++++||+|++++|.|+.....+ .. .|+++..++
T Consensus 53 ~~lE~~lA~l~g----------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~-~gi~v~~~d 121 (377)
T TIGR01324 53 FALQDAMCELEG----------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKR-MGVDITYYD 121 (377)
T ss_pred HHHHHHHHHHhC----------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHh-cCcEEEEEC
Confidence 589999998865 468999999999999999999999999999999998765432 33 388877664
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.. +.+.+++++++ ++|+|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+...+. .
T Consensus 122 ~~-------~~e~l~~~i~~------~tklV~lesp~Np~g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~--~-- 181 (377)
T TIGR01324 122 PL-------IGEDIATLIQP------NTKVLFLEAPSSITFEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLF--K-- 181 (377)
T ss_pred CC-------CHHHHHHhcCC------CceEEEEECCCCCCCcHHH---HHHHHHHHHHcCCEEEEECCCcccccc--C--
Confidence 32 22677777753 7899999999999988765 999999999999999999999743221 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhhcCC-CChHHHHHHHHhcCChhHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSSFGL-VSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~ 330 (483)
+ + ..+..++++|++|.+|- ++...|+++++++.+.........++. .++.....+..-++.
T Consensus 182 -p---l-------~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~t------ 244 (377)
T TIGR01324 182 -P---L-------EHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRT------ 244 (377)
T ss_pred -c---c-------ccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhh------
Confidence 1 1 22456889999999863 347789998854433323223333332 344333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 245 -l~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 245 -LGVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344555566666677777765
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-19 Score=178.05 Aligned_cols=210 Identities=18% Similarity=0.191 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|.+.+|++.+ .+..+++++++.|+.+++.+++++||+|+++.++|.+.... +... |+++..+
T Consensus 63 v~~lE~~la~leg----------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~-Gi~v~~v 131 (432)
T PRK06702 63 LAAFEQKLAELEG----------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKL-GIDVTFF 131 (432)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHC-CCEEEEE
Confidence 5778888888765 34578899999999999999999999999999999866554 4554 9998888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
.. .+|++.++++|++ ++|+|++.+|+||++.+.+ +++|+++|+++|+++|+|++|+.- +.
T Consensus 132 d~------~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP-~~---- 191 (432)
T PRK06702 132 NP------NLTADEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATP-YL---- 191 (432)
T ss_pred CC------CCCHHHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCch-hh----
Confidence 53 3688999999874 8999999999999999999 889999999999999999998521 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCcc-----ccCCCCceE-----EEEEecChHHHH----------------------
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSK-----DMGFPGFRV-----GIIYSYNDQVVS---------------------- 299 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK-----~~g~~GlRi-----G~li~~~~~l~~---------------------- 299 (483)
... + ...-.|+++|+|| ..+++|+++ +|..+++..+..
T Consensus 192 -~~p--l-------~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 261 (432)
T PRK06702 192 -CQA--F-------EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVK 261 (432)
T ss_pred -CCh--h-------hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHH
Confidence 111 1 1244588999999 778899887 576553222221
Q ss_pred -HHHHhhhc-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 300 -CARKMSSF-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 300 -~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.......+ ..++++....+..-|+.. ..+.++..++...+.+.|+++
T Consensus 262 ~~~~~~~~~g~~~sp~~a~l~~rgL~Tl-------~lR~~r~~~Na~~la~~L~~~ 310 (432)
T PRK06702 262 ARVQLLRDYGNCMSPFNAYISNIGLETL-------HLRMERHSENALAVAKWLADH 310 (432)
T ss_pred HHHHHHHHccCCCCHHHHHHHHhccCcH-------HHHHHHHHHHHHHHHHHHHhC
Confidence 11122333 335666666666666542 233334457777888888876
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-18 Score=175.75 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~ 172 (483)
..+|++.||++.+ .+..++++++++++..++.+++++||+|+++.+.|+.....+... .|+++..++
T Consensus 60 ~~~Le~~lA~l~g----------~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 60 NDVLEQRVAALEG----------GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred HHHHHHHHHHHhC----------CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 4688888888865 235567778889999999999999999999999998655554421 266665554
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
. .|++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.... .
T Consensus 130 ~-------~d~e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~---- 188 (425)
T PRK06084 130 H-------DDIAALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-C---- 188 (425)
T ss_pred C-------CCHHHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C----
Confidence 2 378999998864 7899999999999999999 78888999999999999999974311 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY 293 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~ 293 (483)
.++ . ....+++.|+||.+|.+|.++|.+++.
T Consensus 189 ~p~-~---------~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 189 RPF-E---------HGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred Chh-h---------cCCCEEEECchhcccccccceeEEEEe
Confidence 111 1 134488899999999899999977764
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-19 Score=178.14 Aligned_cols=175 Identities=17% Similarity=0.305 Sum_probs=131.4
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
|..++++++++++.+.+| .+++++|+|+++++.+++.++ +++||+|+++.|+|..+...+... |++++.+++
T Consensus 28 g~~~~~~~~e~~la~~~g------~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~-G~~~v~~d~ 100 (375)
T PRK11706 28 GDGGFTRRCQQWLEQRFG------SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLR-GAKIVFVDI 100 (375)
T ss_pred CCCHHHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHc-CCEEEEEec
Confidence 345677777777776544 469999999999999887765 799999999999999999988876 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSF 252 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~ 252 (483)
+++ +|.+|++++++++.+ ++++|+++ |+||...+ +.+|.++|+++|++||+|++|+.+. +.+ .+
T Consensus 101 d~~-~~~~d~~~le~~i~~------~tk~i~~~---~~~G~~~~---~~~i~~la~~~~i~vIeD~a~a~g~~~~~-~~- 165 (375)
T PRK11706 101 RPD-TMNIDETLIEAAITP------KTRAIVPV---HYAGVACE---MDTIMALAKKHNLFVVEDAAQGVMSTYKG-RA- 165 (375)
T ss_pred CCC-cCCcCHHHHHHhcCC------CCeEEEEe---CCCCCccC---HHHHHHHHHHcCCEEEEECccccccccCC-ee-
Confidence 754 588999999998863 68888876 46998877 7788888999999999999998653 222 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCc--cccCCCCceEEEEEecChHHHHHHHHhh
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLS--KDMGFPGFRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~~GlRiG~li~~~~~l~~~~~~~~ 305 (483)
+..+ . .+.+.||+ |.++ +|.+.++++. ++.+.+.++.++
T Consensus 166 --~g~~---------~-~~~~~Sf~~~K~l~-~g~gG~~~~~-~~~~~~~~~~~~ 206 (375)
T PRK11706 166 --LGTI---------G-HIGCFSFHETKNYT-AGEGGALLIN-DPALIERAEIIR 206 (375)
T ss_pred --eecC---------c-CEEEEeCCCCcccc-ccCCeEEEEC-CHHHHHHHHHHH
Confidence 1111 1 12233443 9997 6887777765 566666554433
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=174.20 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=124.7
Q ss_pred cCCCCCCcH---HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhh
Q 011570 89 IFQDYHGLP---EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRW 162 (483)
Q Consensus 89 ~Y~~~~g~~---~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~ 162 (483)
.|+.. |.+ .|++.+|++.+ .+..+++++++.++..++.+++++||+|+++++.|+.... .+..
T Consensus 40 ~Y~r~-g~p~~~~lE~~la~leg----------~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~ 108 (397)
T PRK05939 40 TYARQ-GTPTTAALEAKITKMEG----------GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRG 108 (397)
T ss_pred CcCCC-CCHHHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHh
Confidence 35543 434 88888888765 2234455555899999999999999999999999976543 3444
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
. |++++.++. .|++++++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|.
T Consensus 109 ~-G~~v~~v~~-------~d~e~l~~~l~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 109 L-GVEVTMVDA-------TDVQNVAAAIRP------NTRMVFVETIANPGTQVAD---LAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred c-CCEEEEECC-------CCHHHHHHhCCC------CCeEEEEECCCCCCCCHHh---HHHHHHHHHHcCCEEEEECCcc
Confidence 4 999988875 278889988853 7899999999999999855 9999999999999999999985
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY 293 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~ 293 (483)
....-. + . ..+..+++.|+||.++..|.++|+++..
T Consensus 172 ~~~~~~-----~---~-------~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 172 SPWLFR-----P---K-------DVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred cccccC-----c---c-------ccCCEEEEecCeecccCCCCeEEEEEec
Confidence 321100 0 0 1246688999999999889999998874
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-19 Score=176.31 Aligned_cols=288 Identities=17% Similarity=0.181 Sum_probs=188.3
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
....++++.++++++ .+++++++|+++++..++.++ ..+||+|+++.++|..+...+... |.+++.++
T Consensus 18 ~~~~~~~~~la~~~~----------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~ 86 (352)
T cd00616 18 PKVREFEKAFAEYLG----------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLL-GATPVFVD 86 (352)
T ss_pred HHHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCeEEEEe
Confidence 347899999999976 246888889999999999998 689999999999999988888875 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+++ .++.+|++.+++.+.+ ++++|++++ |+|.+.+ +++|.++|+++|+++|+|+++....... .
T Consensus 87 ~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~-~-- 150 (352)
T cd00616 87 IDP-DTYNIDPELIEAAITP------RTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK-G-- 150 (352)
T ss_pred cCC-CcCCcCHHHHHHhcCc------CCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC-C--
Confidence 864 3678999999988743 788888764 6899887 7777888889999999999997321111 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCc--cccCCCCceEEEEEecChHHHHHHHHhhhcCC--------------CChHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLS--KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--------------VSSQTQH 316 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~--------------~s~~~q~ 316 (483)
.. +. . ...+.+.|++ |.++ +-+.|++++.++.+.+.++.....+. ...+...
T Consensus 151 ~~---~~------~-~~d~~~~S~~~~K~~~--~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T cd00616 151 RK---VG------T-FGDAGAFSFHPTKNLT--TGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEI 218 (352)
T ss_pred EE---cc------c-CcceeEEcCCCCCCCc--ccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHH
Confidence 00 10 0 1224556766 8774 33568888866666655544322110 0011111
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc-----eEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA-----GLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~-----g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
.++..+.. ...+++..++.+++.+++.+.|.++ |+++..+.. ...+.+.++.. .. ....++.+.|.
T Consensus 219 ~aa~~~~~----l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~v~~~L~ 290 (352)
T cd00616 219 QAAIGLAQ----LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPE-AG---ESRDELIEALK 290 (352)
T ss_pred HHHHHHHH----HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCc-CC---CCHHHHHHHHH
Confidence 11111111 1123445555677778888889886 777654321 23444455421 00 11235666665
Q ss_pred HhcCeEeeCCCCCCCC----------------C-------CCEEEEEecc-CCHHHHHHHHHHHH
Q 011570 391 NEVKLNVSPGSSFHCP----------------N-------PGWFRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~----------------~-------~~~iRis~~~-~~~e~l~~~l~~L~ 431 (483)
+.||.+... |.+. . .+.+||++.. .++++++.++++|+
T Consensus 291 -~~gI~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 291 -EAGIETRVH--YPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred -HCCCCeeee--cCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 559965422 2110 0 2579999976 59999999988873
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=176.71 Aligned_cols=218 Identities=18% Similarity=0.209 Sum_probs=149.6
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~ 163 (483)
..|+.. |. +.++++.+++.+..+ .++.++++|+++++..++ .++++||+|+++.|.|+.+...+ ..
T Consensus 125 ~~Y~r~-gn-pt~~aLE~~lA~leg------~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~- 194 (464)
T PLN02509 125 YDYTRS-GN-PTRDALESLLAKLDK------ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPR- 194 (464)
T ss_pred CccCCC-CC-HHHHHHHHHHHHHhC------CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHH-
Confidence 457655 54 468888888876543 567777788888987665 57899999999999999876433 34
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|++++.++. .|++++++++.+ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.
T Consensus 195 ~G~~v~~vd~-------~d~e~l~~ai~~------~TklV~lesPsNPtG~i~D---l~~I~~lAk~~g~~lIVD~A~a~ 258 (464)
T PLN02509 195 SGVVVKRVNT-------TNLDEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKIAEMAHAQGALVLVDNSIMS 258 (464)
T ss_pred CCeEEEEeCC-------CCHHHHHHhCCc------CCeEEEEECCCCCCCCHHH---HHHHHHHHHHcCCEEEEECCccc
Confidence 4888887753 367888888753 7899999999999999744 99999999999999999999864
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc-C-CCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF-G-LVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~-~-~~s~~~q~~~~~ 320 (483)
..+ . . ++ . ....+++.|++|.++-+| +=.|.+++.++.+...+...... + ..++.. +..
T Consensus 259 ~~~-~-~---pl-~---------~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~---A~l 320 (464)
T PLN02509 259 PVL-S-R---PL-E---------LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFD---CWL 320 (464)
T ss_pred ccc-C-C---hh-h---------cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHH---HHH
Confidence 322 1 1 11 1 134578899999986433 44678887555554443333222 2 133333 222
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.+..-+. +..+.++..++...+.+.|+++
T Consensus 321 ~lr~L~t----L~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 321 CLRGIKT----MALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred HHhhhhh----HHHHHHHHHHHHHHHHHHHhcC
Confidence 3332222 4555666677788888888876
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=175.21 Aligned_cols=275 Identities=13% Similarity=0.145 Sum_probs=176.4
Q ss_pred CCcEEEeCChhHHHHHHHHHhc-------C-CCCeEEEeCCCCcChHHHHhhhcCcE------------EEEeecCCCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLA-------D-PGDAFLVPTPYYPGFDRDLRWRTGVQ------------LVPVVCDSSND 178 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~-------~-~gd~Vlv~~P~y~~~~~~~~~~~G~~------------~~~v~~~~~~~ 178 (483)
.+.+++++++++++..++.... + ..+.|+..+-+|.+.........+.. +..++.
T Consensus 92 ~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 166 (397)
T TIGR03246 92 ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY----- 166 (397)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----
Confidence 4699999999999999998751 1 23567777777766543222221321 112221
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAE 257 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~ 257 (483)
.|++.+++.+.+ ++++|++..++++.|.+. +.+.+++|.++|++||+++|+||+|.++...+ . +.+...
T Consensus 167 --~d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G-~-~~a~~~ 236 (397)
T TIGR03246 167 --NDLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-E-LYAYMH 236 (397)
T ss_pred --CCHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccc-c-chhhhh
Confidence 278899888853 677777775455666554 88999999999999999999999997653333 2 222111
Q ss_pred hhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHH
Q 011570 258 IIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAES 335 (483)
Q Consensus 258 l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (483)
+.- .++ + -|+||.+| +|+|+||+++ ++.+.+.+..... .+..+++++.++.+.++... ..+.
T Consensus 237 ~gv-----~pD--i--~t~~K~lg-gG~pigav~~-~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~-----~~~l 300 (397)
T TIGR03246 237 YGV-----TPD--I--LTSAKALG-GGFPIGAMLT-TTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVN-----TPEL 300 (397)
T ss_pred cCC-----CCC--E--EEeehhhh-CCcceeEEEE-cHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHh-----hccH
Confidence 110 122 2 28899998 8999999999 5666665543211 12356777777766664321 1234
Q ss_pred HHHHHHHHHHHHHhhhcCC-----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 336 AKRIAERHKAFTWGLSQVG-----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~g-----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
.+.++++.+++.+.|++++ +....+. |.++.+.+..... .....++..|++ +||.+.+. ++++
T Consensus 301 ~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~-G~~~~i~~~~~~~----~~~~~~~~~l~~-~Gv~~~~~------g~~~ 368 (397)
T TIGR03246 301 LAGVKQRHDLFVDGLEKINARYNVFSEIRGK-GLLIGAVLTEAYQ----GKAKQFVNAAAE-EGVIALIA------GPNV 368 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEeeecC-ceEEEEEEcCchh----hHHHHHHHHHHH-CCeEEeec------CCCE
Confidence 5566777777777777653 1222233 4555565543111 123467777775 59998763 2368
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+|++++. .+++++++++++|.+++.+
T Consensus 369 lR~~p~~~~t~~~i~~~~~~l~~~l~~ 395 (397)
T TIGR03246 369 VRFAPSLVISDDDIDEGLARFERAIEQ 395 (397)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9997765 5999999999999998865
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-18 Score=170.76 Aligned_cols=324 Identities=16% Similarity=0.230 Sum_probs=216.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-HhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-LRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-~~~~~G~~ 167 (483)
.|.....+.+|.++++++++ .+.++.|++++.|+++++.+.++|||.| +.|+|...... +... |+.
T Consensus 66 ~yag~~s~~~lE~~va~~~G----------~~~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~-Gav 132 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG----------FKYVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKN-GAT 132 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhC-CeE
Confidence 48777788999999999986 4589999999999998887789999977 66777443343 5554 887
Q ss_pred EEEeecC--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCC-CCcCCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 LVPVVCD--------SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN-PLGTFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 ~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~N-PtG~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
++.++.+ ...++.+|++.++++|++.. ..++++|.+.+++| ..|.++|.++++++.++|++||+.||+|
T Consensus 133 ~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~D 210 (450)
T TIGR02618 133 FVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYD 210 (450)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEE
Confidence 7766544 13357889999999997421 12456888899988 4589999999999999999999999999
Q ss_pred cccccC--ccC---C-CCCcchHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecChHHHHHHHHhhh-c---
Q 011570 239 EIYAAT--VFT---K-ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVVSCARKMSS-F--- 307 (483)
Q Consensus 239 eay~~~--~~~---~-~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~~~~~~~~~-~--- 307 (483)
.+.... .|- . .-.-.++..+..++- . -...++.|..|.++.+ | |+++..++++.+..+.... +
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~--~-~aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~ 284 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEMM--S-YADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGM 284 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHHh--c-cCcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCc
Confidence 998641 110 0 011134533333221 1 1223677999998766 4 6777677777777655422 1
Q ss_pred ---CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch---hhccChHH
Q 011570 308 ---GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL---LKEQTYEA 381 (483)
Q Consensus 308 ---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~---~~~~~~~~ 381 (483)
+..+.-...+++..|.+.- -..+++. -....++|.+.|.+.|+++..|.+|.-++++.... +....+..
T Consensus 285 ~tyGgla~r~~~ala~gL~e~~-~~~y~~~----r~~~a~~La~~L~~~Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~ 359 (450)
T TIGR02618 285 PSYGGLAGRDMEAMAIGIREAV-DYEYIEH----RVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFLPHIPQDQFPA 359 (450)
T ss_pred cccCchhhhhHHHHHHHHHHhh-hHHHHHH----HHHHHHHHHHHHHHCCCcccCCCCcceEEEEhHHhCCCCChhhChH
Confidence 2222223333333333210 0122222 23345788899999999998888888999987543 22233333
Q ss_pred HHHHHHHHHHhcCeE-eeCCCCCCCCC--------C--CEEEEEecc--CCHHHHHHHHHHHHHHHHHhhh
Q 011570 382 EMALWRVIINEVKLN-VSPGSSFHCPN--------P--GWFRVCFAN--MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~-v~pg~~f~~~~--------~--~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..++..|..+.||. +.-|+...... + ..+|+++.. .|.++++...++|..+.++...
T Consensus 360 -~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 429 (450)
T TIGR02618 360 -QSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDD 429 (450)
T ss_pred -HHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhh
Confidence 37788888899985 44454322111 1 359999965 3999999999999987776543
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=170.48 Aligned_cols=208 Identities=17% Similarity=0.225 Sum_probs=138.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|++.+|++.+ ....+++++| +.++..++ .+++|||+|++++|.|+..... +.. .|++++.+
T Consensus 52 ~~~Le~~la~l~g---------~~~al~~~SG-~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~-~gi~v~~v 119 (380)
T PRK06176 52 RFALEELIADLEG---------GVKGFAFASG-LAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVK-NGLSCTII 119 (380)
T ss_pred HHHHHHHHHHHhC---------CCCEEEECCH-HHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHh-cCeEEEEc
Confidence 5788888888865 2334666555 56887666 5679999999999999765433 333 38888777
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+. .|++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+. .+
T Consensus 120 d~-------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~--~p 181 (380)
T PRK06176 120 DT-------SDLSQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ--NP 181 (380)
T ss_pred CC-------CCHHHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC--Cc
Confidence 63 378889888753 7899999999999999998 778888899999999999999754322 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc-C-CCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF-G-LVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~-~-~~s~~~q~~~~~~l~~~~~~ 328 (483)
+ .+ ...+++.|++|.++.+| .-.|++++.++.+.+.+...... + ..++.....+..-+..
T Consensus 182 ---~-~~---------gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~t---- 244 (380)
T PRK06176 182 ---L-LL---------GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKT---- 244 (380)
T ss_pred ---c-cc---------CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCc----
Confidence 1 11 33478899999997555 45677887556666555444433 2 1344333333322322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 245 ---l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 245 ---LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhC
Confidence 1222333344455566666654
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=173.73 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=134.1
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
...+|++++|++++ .+++++++|+++++.+++.++ +++||+|+++.|+|..+...+... |++++.+++
T Consensus 34 ~~~~le~~la~~~g----------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~v~vd~ 102 (379)
T PRK11658 34 KNQALEQAFCQLTG----------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLL-GATPVMVDV 102 (379)
T ss_pred hHHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHc-CCEEEEEec
Confidence 36899999999986 246888999999999999999 899999999999999998888775 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-ccCCCCCc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VFTKESSF 252 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~~~~~~~ 252 (483)
+. ++|.+|++.+++++.+ ++|+|+ |+||+|...+ +++|.++|+++|++||+|++|+.. .+.+ ..
T Consensus 103 ~~-~~~~~d~~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~a~g~~~~~-~~- 167 (379)
T PRK11658 103 DR-DTLMVTPEAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGERYGIPVIEDAAHAVGTYYKG-RH- 167 (379)
T ss_pred CC-CcCCcCHHHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHHHcCCeEEEECCCccCCeECC-ee-
Confidence 75 3578999999998864 788876 6677999887 778889999999999999999732 2222 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~ 305 (483)
.. .... .+.||++...+++.+.|+++++++++.+.++...
T Consensus 168 ~g-----------~~g~--~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~ 207 (379)
T PRK11658 168 IG-----------ARGT--AIFSFHAIKNITCAEGGLVVTDDDELADRLRSLK 207 (379)
T ss_pred cC-----------CCCC--EEEeCCCCCcCcccCceEEEECCHHHHHHHHHHH
Confidence 11 1122 3457776655677788999987677766655443
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-18 Score=173.52 Aligned_cols=310 Identities=10% Similarity=0.069 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc----------
Q 011570 99 FRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV---------- 166 (483)
Q Consensus 99 Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~---------- 166 (483)
.+..+|+.+.+... ....+.+++++++++++..++.... ....+|+....+|.+.........|.
T Consensus 77 ~~~~la~~l~~~~p---~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~ 153 (420)
T TIGR00700 77 GYVALAEKLNRIAP---GSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGP 153 (420)
T ss_pred HHHHHHHHHHHhCC---CCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCC
Confidence 34455555544321 0123589999999999998886542 22356888888887754332221111
Q ss_pred ---EEEEeecCCC---------CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCc
Q 011570 167 ---QLVPVVCDSS---------NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNI 233 (483)
Q Consensus 167 ---~~~~v~~~~~---------~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~ 233 (483)
.+..++.... ..+.-+++.+++.+... ....++.+|++..-..-+|.+++ .+.+++|.++|++||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gi 232 (420)
T TIGR00700 154 FAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGI 232 (420)
T ss_pred CCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 1122222110 00111244565555311 12235666666544666788664 5559999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCC
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVS 311 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s 311 (483)
++|+||+|.++.+.+ . +.+...... .++ +.+|||.++ +|+|+||+++ ++.+.+.+.. ....+..+
T Consensus 233 llI~DEV~tg~gr~g-~-~~a~~~~~~-----~pD----i~~lsK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~T~~~~ 299 (420)
T TIGR00700 233 VFIADEVQTGFARTG-A-MFACEHEGP-----EPD----LITTAKSLA-DGLPLSGVTG-RAEIMDAPAPGGLGGTYAGN 299 (420)
T ss_pred EEEEEecccCCcccc-h-hHHHhhcCC-----CCC----EEEeecccc-CCcceEEEEe-cHHHHhhcCCCCcCCCCCcC
Confidence 999999999865544 2 223222211 122 336999998 9999999999 4556555432 11223467
Q ss_pred hHHHHHHHHhc---CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhh-ccChHHHHHHH
Q 011570 312 SQTQHLIATML---SDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLK-EQTYEAEMALW 386 (483)
Q Consensus 312 ~~~q~~~~~~l---~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~-~~~~~~~~~~~ 386 (483)
+++|.++.+.+ .++.+ .++..+..+.++++.+.+.+ .++ +....+. |+++|+++.+... .........+.
T Consensus 300 pl~~aaa~a~l~~l~~~~~-~~~~~~~g~~l~~~L~~l~~---~~~~~~~vrg~-G~~~~i~~~~~~~~~~~~~~~~~l~ 374 (420)
T TIGR00700 300 PLACAAALAVLAIIESEGL-IERARQIGRLVTDRLTTLKA---VDPRIGDVRGL-GAMIAVELVDPGTTEPDAGLAERIA 374 (420)
T ss_pred HHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHh---hCCCEEEeecc-ceEEEEEEecCCCCCccHHHHHHHH
Confidence 88888875555 33332 33344444444433333322 233 3334445 6788887742100 00111122444
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
..++ ++||.+.|+..|+ +++||+++. .+++++++++++|.+++.
T Consensus 375 ~~~~-~~Gv~i~p~~~f~----~~lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 375 TAAH-AAGLLLLTCGMFG----NIIRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred HHHH-HCCeEEeccCCCC----CEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 4444 5699999987763 589999975 599999999999999874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-18 Score=172.52 Aligned_cols=344 Identities=13% Similarity=0.072 Sum_probs=199.5
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHH----HHHHHHHhhhCCCCCcCCCcE
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRN----AVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~----~ia~~~~~~~g~~~~~~~~~i 122 (483)
..|+|-.++|.+.+............. .+.. .....-|+......+|.+ .++++++ ...-+
T Consensus 29 ~~~~l~~sen~~~p~v~~a~~~~~~~~-----~~~g-~~gsr~~~G~~~~~~lE~~~~~~la~l~g---------~~~al 93 (416)
T PRK13034 29 DHLELIASENFTSPAVMEAQGSVLTNK-----YAEG-YPGKRYYGGCEFVDEVEALAIERAKQLFG---------CDYAN 93 (416)
T ss_pred cCeeecccccCCCHHHHHHhcchhhcC-----CCCC-CCCCcccCCChHHHHHHHHHHHHHHHHhC---------CCceE
Confidence 458888888887554443332221010 0000 000001111223456666 6666654 22333
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh-HHHHhhh-cCcEE--EEeecCCCCCcccCHHHHHHHHHHHHhcCC
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF-DRDLRWR-TGVQL--VPVVCDSSNDFKVTMEALEAAYEKAQESNI 198 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~-~~~~~~~-~G~~~--~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 198 (483)
+.+++++.|+..++.++++|||+|+++..+|.+. ...++.. .+... +.++.+. .++.+|++++++.+...
T Consensus 94 v~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~~~le~~l~~~----- 167 (416)
T PRK13034 94 VQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LTGLIDYDEVEELAKEH----- 167 (416)
T ss_pred EecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-ccCCcCHHHHHHHHhhc-----
Confidence 4567889999999999999999999999998762 2111110 02211 2333332 24568999999988642
Q ss_pred ceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 199 RIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 199 ~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
++++|+++.+.+ |...+ +.+|.++|+++|+++|+|++++...+.. ..... .+ ....++++|++|
T Consensus 168 ~~klVi~~~~~~--g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~-g~~~~--~~--------~~~Di~~~s~~K 231 (416)
T PRK13034 168 KPKLIIAGFSAY--PRELD---FARFREIADEVGALLMVDMAHIAGLVAA-GEHPN--PF--------PHAHVVTTTTHK 231 (416)
T ss_pred CCeEEEECCCcc--ccccC---HHHHHHHHHHcCCEEEEeCcccccCccc-CCCCC--CC--------CCceEEEEeCcc
Confidence 568887766654 56666 7777888999999999999987554433 11110 01 134578899999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHhhhcC--C-CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011570 279 DMGFPGFRVGIIYSYNDQVVSCARKMSSFG--L-VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI 355 (483)
Q Consensus 279 ~~g~~GlRiG~li~~~~~l~~~~~~~~~~~--~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi 355 (483)
.++.+. -|++++.++.+...++.....+ . ..++...+++..+. ..+.....+.++++.++.+++.+.|.+.|+
T Consensus 232 ~l~g~~--GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~--~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~ 307 (416)
T PRK13034 232 TLRGPR--GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFG--EALQPEFKTYAKQVIANAQALAEVLKERGY 307 (416)
T ss_pred cCCCCC--CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 983232 3788886666655554432221 1 11222222221111 111111234567888899999999998899
Q ss_pred eeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC----CCCCCEEEEEecc-----CCHHHHHH
Q 011570 356 GCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH----CPNPGWFRVCFAN-----MDDRTMEI 425 (483)
Q Consensus 356 ~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~----~~~~~~iRis~~~-----~~~e~l~~ 425 (483)
++..+ .....+++.+..... ....+...|++.||.+.+-.... +..+..+|+++.. .+++++++
T Consensus 308 ~~~~~~~~t~i~~v~~~~~~~------~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~ 381 (416)
T PRK13034 308 DLVSGGTDNHLLLVDLRPKGL------SGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFRE 381 (416)
T ss_pred EeccCCCCCcEEEEEcCCCCC------CHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHH
Confidence 87642 233466666653211 11334344556799987521111 1124569999743 35899999
Q ss_pred HHHHHHHHHHHh
Q 011570 426 ALSRITSFMLKN 437 (483)
Q Consensus 426 ~l~~L~~~l~~~ 437 (483)
+++.|++++.+.
T Consensus 382 l~~~l~~~~~~~ 393 (416)
T PRK13034 382 IANWILDVLDDL 393 (416)
T ss_pred HHHHHHHHHhcC
Confidence 999999998854
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=167.94 Aligned_cols=212 Identities=12% Similarity=0.106 Sum_probs=142.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
..+.++++++.+....+ .++.+ +++++++|+..++.+++++||+|+++.|.|+++... ++. .|+++..+
T Consensus 62 gnPt~~~Le~~la~le~-----~~~~v-~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~-~Gi~v~~v 134 (395)
T PRK05967 62 GTPTTDALCKAIDALEG-----SAGTI-LVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR-LGVEVEYY 134 (395)
T ss_pred CChHHHHHHHHHHHHhC-----CCCEE-EECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh-cCeEEEEe
Confidence 36666666666654432 34455 445578999999999999999999999999987653 344 49988887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ +.+.+++++++ ++|+|++++|+||++.+ .++++|+++|+++|+++|+|++|....+-.
T Consensus 135 d~~-------~~e~l~~al~~------~TklV~lesPsNP~l~v---~dl~~I~~la~~~g~~vvVD~t~a~p~~~~--- 195 (395)
T PRK05967 135 DPE-------IGAGIAKLMRP------NTKVVHTEAPGSNTFEM---QDIPAIAEAAHRHGAIVMMDNTWATPLYFR--- 195 (395)
T ss_pred CCC-------CHHHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHhCCEEEEECCccCceecC---
Confidence 532 34678887754 78999999999998654 559999999999999999999997532221
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHH-hhhcC-CCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARK-MSSFG-LVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~-~~~~~-~~s~~~q~~~~~~l~~~~~~ 328 (483)
+ . ..+..|++.|.+|.++ -.++..|+++.+ +.+.+.+.. ....+ .+++.....+..-++.
T Consensus 196 --p-l---------~~GaDivv~S~tKy~~Gh~d~~~G~v~~~-~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~T---- 258 (395)
T PRK05967 196 --P-L---------DFGVDISIHAATKYPSGHSDILLGTVSAN-EKCWPQLLEAHGTLGLCAGPDDTYQILRGLRT---- 258 (395)
T ss_pred --h-h---------HcCCCEEEEecccccCCCCCeeEEEEEcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHcCccc----
Confidence 1 1 1244588999999864 345778877764 444333332 22233 2344433333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+.-+.++..++...+.+.|+++
T Consensus 259 ---l~lR~~~~~~na~~lA~~L~~h 280 (395)
T PRK05967 259 ---MGIRLEHHRKSALEIARWLEGR 280 (395)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhC
Confidence 3344455566677778888876
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-17 Score=171.33 Aligned_cols=314 Identities=12% Similarity=0.113 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~------- 166 (483)
.+....+|+.+....+ -.. +.+++++++++++..++.... .....|+....+|.+.........|.
T Consensus 96 ~~~~~~la~~L~~~~p----~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~ 171 (451)
T PRK06918 96 YEPYIELAEKLAALAP----GSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFG 171 (451)
T ss_pred cHHHHHHHHHHHHhCC----CCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCcccccc
Confidence 3455666666654422 112 589999999999998886542 22356888888887765433222121
Q ss_pred ------EEEEeecCCC--CCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCC-CHHHHHHHHHHH
Q 011570 167 ------QLVPVVCDSS--NDFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFL-DRETLKDIVSFI 228 (483)
Q Consensus 167 ------~~~~v~~~~~--~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~-~~~~l~~i~~~a 228 (483)
.+..+|.... ....+. ++.+++.+.+.. ...++ +.++..|-... |.++ +.+.+++|.++|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i-Aavi~EPi~g~gG~~~~~~~~l~~l~~l~ 249 (451)
T PRK06918 172 FGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEV-APETI-AAVVMEPVQGEGGFIVPSKKFVQEVRNIC 249 (451)
T ss_pred CCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhc-CCCce-EEEEECcccCCCCCccCCHHHHHHHHHHH
Confidence 1122222110 001111 122333332110 11244 44556675444 6545 556699999999
Q ss_pred hhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--
Q 011570 229 NEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-- 306 (483)
Q Consensus 229 ~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-- 306 (483)
++||+++|+||+|.++.+.+ . +.+...+.. .++ +.||||.++ +|+|+||+++ ++.+.+.+.....
T Consensus 250 ~~~gillI~DEV~tg~gr~g-~-~~a~~~~~v-----~pD----i~t~sK~l~-~G~pig~v~~-~~~i~~~~~~~~~~~ 316 (451)
T PRK06918 250 SEHGILFVADEIQTGFARTG-K-YFAIEHFDV-----VPD----LITVSKSLG-AGVPISGVIG-RKEIMDESAPGELGG 316 (451)
T ss_pred HHcCCEEEEeccccCcCccC-c-eehhHhcCC-----CCC----EEeeehhhc-CCCccEEEEE-cHHHHhccCCCCcCc
Confidence 99999999999999875554 3 334333321 123 348999998 9999999999 4555555432211
Q ss_pred cCCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchh-hccChHH
Q 011570 307 FGLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLL-KEQTYEA 381 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~-~~~~~~~ 381 (483)
.+..+++++.++.++++ ++. +.++.++..+.+.++.+.+.+ +++ +....+.|+++.|....+.. .......
T Consensus 317 T~~g~~l~~aaa~a~l~~i~~~~-~~~~~~~~g~~l~~~l~~l~~---~~~~~~~vrg~G~~~~~~~~~~~~~~~~~~~~ 392 (451)
T PRK06918 317 TYAGSPLGCAAALAVLDIIEKEN-LNDRAIELGKVVMNRFEEMKN---KYNCIGDVRGLGAMCAFELVQDRKTKEPDKTL 392 (451)
T ss_pred CCCcCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHh---hCCCceeeccceeEEEEEEccCCCcCCCcHHH
Confidence 23467888888555553 322 234444444444444333332 222 23345667777665542110 0011111
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
...+...++ ++||.+.|+..|+ +++||+++. ++++++++++++|.+++++..
T Consensus 393 ~~~l~~~~~-~~Gvlv~~~~~~~----~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~ 445 (451)
T PRK06918 393 TANICKEAN-KRGLLLLSAGTYG----NVIRVLMPLVITDEQLEEGLTIIEESLQACY 445 (451)
T ss_pred HHHHHHHHH-HCCeEEeecCCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 234555555 5699999986653 589999976 699999999999999998764
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-17 Score=166.53 Aligned_cols=316 Identities=15% Similarity=0.120 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc--------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------- 166 (483)
.+.+..+|+.+.+..+ ..-+.+++++++++++..++.... .....|+....+|.+.........|.
T Consensus 83 ~~~~~~la~~L~~~~p----~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~ 158 (443)
T PRK08360 83 PVEPLLLAEKLIEIAP----GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALV 158 (443)
T ss_pred cHHHHHHHHHHHHhCC----CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCC
Confidence 4455666666665422 123689999999999999886542 22357888887776653222111121
Q ss_pred ----EEEEeecCCCC--Ccc--------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhc
Q 011570 167 ----QLVPVVCDSSN--DFK--------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEK 231 (483)
Q Consensus 167 ----~~~~v~~~~~~--~~~--------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~ 231 (483)
.+..+|.+... .|. -+++.+++.+... ..+.++++|++..-+||+|.+++ .+.+++|.++|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~ 237 (443)
T PRK08360 159 GELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH 237 (443)
T ss_pred CCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 12222222110 011 1234455555321 11246777777643799999887 55799999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGL 309 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~ 309 (483)
|+++|+||+|.++.+.+ . +.+...+.- . +.++ ++||++| +|+|+||+++ ++.+.+.+..... .+.
T Consensus 238 g~llI~DEv~~g~gr~G-~-~~a~~~~~~-----~-pDii---tlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~ 304 (443)
T PRK08360 238 GILLVVDEVQSGLGRTG-K-WFAIEHFGV-----E-PDII---TLGKPLG-GGLPISATIG-RAEIMDSLPPLAHAFTLS 304 (443)
T ss_pred CCEEEEeccccCCCcCc-c-chhhhhcCC-----C-CCEE---Eeccccc-CCceeEEEEE-cHHHHhhhcCCCCCCCCC
Confidence 99999999999864444 2 222222211 2 2232 7799999 9999999999 4666665543221 233
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhh--ccChHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLK--EQTYEAEM 383 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~--~~~~~~~~ 383 (483)
.+++++.++.++++.-. + ....++++++-+++.+.|++ .++......-|+++-+++..... ........
T Consensus 305 ~~p~~~aaa~a~l~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~ 379 (443)
T PRK08360 305 GNPVASAAALAVIEEIE--E---KNLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLVKDRETKERAYEEAA 379 (443)
T ss_pred cCHHHHHHHHHHHHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEecCCcccCccHHHHH
Confidence 56777777766664311 0 01222333333334443332 33222223345677676642110 01111223
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhccC
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAKV 442 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~~ 442 (483)
.+...++ ++||.+.+.. .+.+|++... ++++++++++++|.++++...+.+.
T Consensus 380 ~~~~~l~-~~Gi~~~~~~------~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~~~~ 432 (443)
T PRK08360 380 KVVWRAW-ELGLIVTFFS------GNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEEGKV 432 (443)
T ss_pred HHHHHHH-HCCeEEeecC------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 5666666 5699986431 3579998766 5999999999999999988765543
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=168.25 Aligned_cols=350 Identities=11% Similarity=0.069 Sum_probs=217.4
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
...|+|-.+||..++... +++...-.. .....+.....|+......++.....+...+.+| .+..+|-..
T Consensus 49 ~~~l~LiasEN~~s~~v~-~a~~s~l~n-----kyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~----a~~anvqp~ 118 (493)
T PRK13580 49 RSSLKLIASENYSSLAVQ-LAMGNLLTD-----KYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFG----AEHAYVQPH 118 (493)
T ss_pred hcCceEecccccCCHHHH-HHhcccccc-----cCcCCCCCccccCCCchHHHHHHHHHHHHHHHhC----CCcccccCC
Confidence 345788888887765433 222211000 0001112223455555566777777777777776 455677777
Q ss_pred CChhHHHHHHHHHhcCC-------------------------------CCeEEEeCCCCcChHHH-----HhhhcCcEEE
Q 011570 126 GGATGAHETVAFCLADP-------------------------------GDAFLVPTPYYPGFDRD-----LRWRTGVQLV 169 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~-------------------------------gd~Vlv~~P~y~~~~~~-----~~~~~G~~~~ 169 (483)
+|+. ++..++.++++| ||+|+..++..+++... +... ..+++
T Consensus 119 Sg~~-An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~-~~~~~ 196 (493)
T PRK13580 119 SGAD-ANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGK-MFHQR 196 (493)
T ss_pred CcHH-HHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhh-eeeeE
Confidence 7755 666777888876 89999887766544221 1111 25566
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++++++ ...+|.+.+++.+.+ +++.|+++..+|- |...+ +++|.++|+++|+++++|+++...++..
T Consensus 197 ~y~vd~~-~g~iD~d~l~~~~~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg- 264 (493)
T PRK13580 197 SYGVDPD-TGLLDYDEIAALARE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAG- 264 (493)
T ss_pred ecccCcc-cCccCHHHHHHHHhh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceecc-
Confidence 6777643 357999999999876 5677888888776 44667 7788888889999999999998665553
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhH
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~ 327 (483)
..+.. .... .....++++|++|++ .|-+.|++++ ++.+.+.+....++ ++..++...+++..+.. .
T Consensus 265 ~~~~~--~~~~-----~~~~D~vtgT~hKaL--~GP~GG~I~~-~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e--~ 332 (493)
T PRK13580 265 KVFTG--DEDP-----VPHADIVTTTTHKTL--RGPRGGLVLA-KKEYADAVDKGCPLVLGGPLPHVMAAKAVALAE--A 332 (493)
T ss_pred ccchh--hcCC-----CCCCcEEEeCChhhc--cCCCeEEEEe-cHHHHHHHhhCCCcccCCCccHHHHHHHHHHHH--H
Confidence 21110 0000 113457899999988 3344589998 45566666444443 22222333322222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
.....++.++++.++.++|.+.|.+.|+++... ..+-.+++++.+.. .....+...|++.||.+.+-.....+
T Consensus 333 ~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~------~~g~~a~~~L~e~GI~vn~i~~Ptvp 406 (493)
T PRK13580 333 RTPEFQKYAQQVVDNARALAEGFLKRGARLVTGGTDNHLVLIDVTSFG------LTGRQAESALLDAGIVTNRNSIPSDP 406 (493)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHH------HHHHHHHHHHHHCCeEEccccCCCCC
Confidence 111124457788899999999999999987531 22357788886421 12234555566789998765544432
Q ss_pred -C---CCEEEEEecc-----CCHHHHHHHHHHHHHHHHHh
Q 011570 407 -N---PGWFRVCFAN-----MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 -~---~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~ 437 (483)
+ +..|||+... .++++++++++.|.++++..
T Consensus 407 ~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 407 NGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 2 4579999864 25899999999999988764
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.7e-17 Score=166.28 Aligned_cols=310 Identities=10% Similarity=0.118 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc--------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------- 166 (483)
.+....+|+.+.+... . ...+.+++++++++++..++.... ....+|+....+|.+.........|.
T Consensus 82 ~~~~~~la~~l~~~~p--~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 158 (421)
T PRK09792 82 YESYVTLAEKINALAP--V-SGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGF 158 (421)
T ss_pred CHHHHHHHHHHHHhCC--C-CCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCC
Confidence 3444555555554321 0 122589999999999998886642 22357888888887754322221121
Q ss_pred -----EEEEeecCCCCCccc----CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEE
Q 011570 167 -----QLVPVVCDSSNDFKV----TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLV 236 (483)
Q Consensus 167 -----~~~~v~~~~~~~~~~----d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI 236 (483)
.++.+|.+.+.. .+ +++.+++.+++.. ...++++|++...++|+|.++ +.+.+++|.++|++||+++|
T Consensus 159 ~~~~~~~~~v~~p~~~~-~~~~~~~~~~l~~~~~~~~-~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI 236 (421)
T PRK09792 159 GPFPGSVYHVPYPSDLH-GISTQDSLDAIERLFKSDI-EAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMI 236 (421)
T ss_pred CCCCCCcEEcCCCcccc-cccHHHHHHHHHHHHHhcc-CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 122223221110 12 2466666664310 123677777765589999866 89999999999999999999
Q ss_pred EccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHH
Q 011570 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQT 314 (483)
Q Consensus 237 ~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~ 314 (483)
+||++.++.+.+ . +.+...+.. .++ +.||||.++ +|+|+||+++ ++++.+.+.. ....+..++++
T Consensus 237 ~DEv~tg~gr~G-~-~~a~~~~~~-----~pD----i~t~gK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~gnpl~ 303 (421)
T PRK09792 237 ADEVQSGFARTG-K-LFAMDHYAD-----KPD----LMTMAKSLA-GGMPLSGVVG-NANIMDAPAPGGLGGTYAGNPLA 303 (421)
T ss_pred EeccccCCCCCC-c-hhHHHhcCC-----CCc----EEEeehhhc-CCCceEEEEE-cHHHHhccCCCCcCCCCCCCHHH
Confidence 999999865544 2 233333311 223 459999998 9999999999 5656554422 11123467788
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCceeecCCc-eEEEeeecCchhhcc-ChHHHHHHHHH
Q 011570 315 QHLIATM---LSDDQFVEKFIAESAKRIAERHKAFTWGLS-QVGIGCLKSNA-GLFLWMDLHHLLKEQ-TYEAEMALWRV 388 (483)
Q Consensus 315 q~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~gi~~~~~~~-g~f~~~~l~~~~~~~-~~~~~~~~~~~ 388 (483)
++++.+. +.++++ +++.+ .+.++.....+.|. +.+. +....| |+++|+++++..... .......+...
T Consensus 304 ~aaa~a~l~~l~~~~~----~~~~~-~~g~~l~~~l~~l~~~~p~-v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~ 377 (421)
T PRK09792 304 VAAAHAVLNIIDKESL----CERAN-QLGQRLKNTLIDAKESVPA-IAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQR 377 (421)
T ss_pred HHHHHHHHHHHHhhhH----HHHHH-HHHHHHHHHHHHHHHhCCC-cceecccceEEEEEecCCccCCcchHHHHHHHHH
Confidence 8754444 433332 22222 22222222222332 2343 234455 899999997421100 01123356666
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
+++ +||.+.+.. ...+.+||.++. ++++++++++++|.++++
T Consensus 378 ~~~-~Gv~i~~~g----~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 378 ALA-QGLLLLTCG----AYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred HHH-CCcEEeecC----CCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 775 699986421 124689999987 699999999999999875
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-18 Score=169.29 Aligned_cols=284 Identities=23% Similarity=0.282 Sum_probs=193.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHH----HhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRD----LRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~ 167 (483)
..+.|+.++++++ .++ ++|++++|++++++.++.++ +++||+|++..-.|++.... .+. .|.+
T Consensus 45 ~~~~r~~la~~lg--------~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~-~g~~ 115 (371)
T PF00266_consen 45 LEEAREALAKLLG--------APPDEEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKR-KGAE 115 (371)
T ss_dssp HHHHHHHHHHHHT--------SSTTEEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHH-TTEE
T ss_pred HHHHHHHHHHhcC--------Cccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccc-chhh
Confidence 3577788888877 456 79999999999999999999 79999999999998776622 223 4999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+..++.+.++ .+|++.++++|.. ++++|+++..+|-||...+ +++|.++|+++|+++++|-+++. +
T Consensus 116 v~~i~~~~~~--~~~~~~~~~~l~~------~~~lv~~~~~~~~tG~~~p---i~~I~~~~~~~~~~~~vD~~~~~---g 181 (371)
T PF00266_consen 116 VRVIPADPGG--SLDLEDLEEALNP------DTRLVSISHVENSTGVRNP---IEEIAKLAHEYGALLVVDAAQSA---G 181 (371)
T ss_dssp EEEEEEGTTS--SCSHHHHHHHHHT------TESEEEEESBETTTTBBSS---HHHHHHHHHHTTSEEEEE-TTTT---T
T ss_pred hccccccccc--hhhhhhhhhhhcc------ccceEEeecccccccEEee---eceehhhhhccCCceeEechhcc---c
Confidence 9999886543 6889999999963 8999999999999999999 88889999999999999999973 3
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---------------------
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--------------------- 306 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--------------------- 306 (483)
. .+ ..+. ..+..+++.|..|.+|.+| +|+++.++ ...+.++....
T Consensus 182 ~-~~-id~~---------~~~~D~~~~s~~Kl~gp~G--~g~l~v~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 247 (371)
T PF00266_consen 182 C-VP-IDLD---------ELGADFLVFSSHKLGGPPG--LGFLYVRP-EAIERLRPAKPGGGYLDFPSLQEYGLADDARR 247 (371)
T ss_dssp T-SS---TT---------TTTESEEEEESTSTTSSST--EEEEEEEH-HHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTG
T ss_pred c-cc-cccc---------ccccceeeecccccCCCCc--hhhheehh-hhhhccccccccccccccccchhccccccccc
Confidence 2 11 2221 2355678899999555555 79999954 44444421110
Q ss_pred c--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec----CCceEEEeeecCchhhccCh
Q 011570 307 F--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK----SNAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 307 ~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~----~~~g~f~~~~l~~~~~~~~~ 379 (483)
+ ++.+.+...++..+++.- .+.-+++..++..+..+++.+.|.+. ++.+.. ...+..+.+.++.. +
T Consensus 248 ~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~---- 320 (371)
T PF00266_consen 248 FEGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGS-D---- 320 (371)
T ss_dssp SSSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTS-S----
T ss_pred ccccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCC-C----
Confidence 1 123333333333333221 12224555667778888888888887 455532 22233455555431 1
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHH
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIA 426 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~ 426 (483)
..++...|.++ ||.+..|..+.. ...+.+|+|++. .++++++++
T Consensus 321 --~~~~~~~L~~~-~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 321 --ADDVVKYLEER-GIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp --HHHHHHHHHHH-TEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred --HHHHHHHHhhc-CEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 22566666655 999999876641 113789999987 589998864
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-17 Score=167.96 Aligned_cols=310 Identities=16% Similarity=0.156 Sum_probs=188.0
Q ss_pred HHHHHHHHHhhhCCCCCcCCCcEEEe---CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---------cCcE
Q 011570 100 RNAVAKFMGKVRGNRITFDPDRIVMS---GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---------TGVQ 167 (483)
Q Consensus 100 r~~ia~~~~~~~g~~~~~~~~~i~it---~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---------~G~~ 167 (483)
|+.++++++ .+++++.++ +|+++++..++.+++++||+|++....|+......... .+.+
T Consensus 86 r~~~a~lf~--------a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~ 157 (452)
T PTZ00094 86 QKRALEAFG--------LDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFE 157 (452)
T ss_pred HHHHHHHhC--------CCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeee
Confidence 345555554 466777677 78899999999999999999999887776654432110 0234
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.++++.+ ..+|+++|++.+++. ++++|++. ++.+|...+ +.+|.++|+++|+++++|++++.....
T Consensus 158 ~~~~~~~~~--g~id~~~L~~~l~~~-----~~~lvi~~--~s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~ 225 (452)
T PTZ00094 158 SLPYQVNEK--GLIDYDKLEELAKAF-----RPKLIIAG--ASAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVA 225 (452)
T ss_pred eeecccCCC--CCcCHHHHHHHHHHh-----CCCEEEEe--CCCCCCccC---HHHHHHHHHHcCCEEEEeccchhcccc
Confidence 445555543 579999999998642 56666654 334999999 677778888999999999999754333
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH-HHhh----h-c-CCCChHHHHHHHH
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA-RKMS----S-F-GLVSSQTQHLIAT 320 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~-~~~~----~-~-~~~s~~~q~~~~~ 320 (483)
. ..... .+ ....+++.|++|+++ |.+.|++++.++ +.+.+ .... + + +..+.....+++.
T Consensus 226 ~-~~~~~--~~--------~~~D~l~~S~hK~l~--GP~Gg~l~~~~~-~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~ 291 (452)
T PTZ00094 226 A-GVLPS--PF--------PYADVVTTTTHKSLR--GPRSGLIFYRKK-VKPDIENKINEAVFPGLQGGPHNHQIAAIAV 291 (452)
T ss_pred C-CCCCC--CC--------CCCcEEEcCCccCCC--CCCceEEEEecc-cchHHHHhhccccCCCCCCCchHHHHHHHHH
Confidence 2 11000 01 134477899999873 333488887443 22211 1111 1 1 1222233333333
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc-eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEe-e
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA-GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV-S 398 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~-g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v-~ 398 (483)
.+..-. ....++.++++.++++++.+.|.+.|+++..+.. .-.+.+.+... .. .. .....+|+++||.+ .
T Consensus 292 al~~~~--~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~~~~~~~v~~~~~--~~---~~-~~~~~~L~~~gI~vs~ 363 (452)
T PTZ00094 292 QLKEVQ--SPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGTDNHLVLVDLRPF--GI---TG-SKMEKLLDAVNISVNK 363 (452)
T ss_pred HHHHHh--ChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCCCCceEeecCCcC--CC---CH-HHHHHHHHHCCcEEec
Confidence 332210 1123456677888889999999888887764221 22344444321 10 11 23444557789999 4
Q ss_pred CCCCCCC--CCCCEEEEEeccC-C----HHHHHHHHHHHHHHHHHhhh-ccCccchhhccc
Q 011570 399 PGSSFHC--PNPGWFRVCFANM-D----DRTMEIALSRITSFMLKNVE-AKVPNKKKLCWQ 451 (483)
Q Consensus 399 pg~~f~~--~~~~~iRis~~~~-~----~e~l~~~l~~L~~~l~~~~~-~~~~~~~~~~~~ 451 (483)
++..+.. ..++++|+++... + +++++.+++.|.++++.... .+...++..+|+
T Consensus 364 ~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 424 (452)
T PTZ00094 364 NTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQVGKKLVDFK 424 (452)
T ss_pred ccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhh
Confidence 4443321 1347899999653 3 89999999999998886432 333355555554
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-17 Score=165.28 Aligned_cols=295 Identities=15% Similarity=0.166 Sum_probs=186.2
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
....+++++++++++. ++.++++|+++++..++.++ +++||+|+++.|+|..+...+... |++++.++
T Consensus 29 ~~~~~le~~la~~~g~----------~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~-G~~~~~~~ 97 (380)
T TIGR03588 29 PTVPAFEEALAEYVGA----------KYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYC-GAKVDFVD 97 (380)
T ss_pred hhHHHHHHHHHHHHCC----------CeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHc-CCEEEEEe
Confidence 3468999999999871 34566778899999999998 799999999999999988888775 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCC
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESS 251 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~ 251 (483)
++++ ++.+|++.+++++.+. ..+++++|+++ |++|...+ +++|.++|+++|++||+|++++... +.+ .+
T Consensus 98 ~~~~-~~~~d~~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~lI~D~a~a~g~~~~~-~~ 167 (380)
T TIGR03588 98 IDPD-TGNIDEDALEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAKKHGLKIIEDASHALGAEYGG-KP 167 (380)
T ss_pred cCCC-cCCcCHHHHHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHHHcCCEEEEECCCcccCccCC-Ee
Confidence 8653 5789999999998632 01267888754 56898877 7888899999999999999997531 322 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCc--cccCCCCceEEEEEecChHHHHHHHHhhhcCCC-------------------
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLS--KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV------------------- 310 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~------------------- 310 (483)
..+ .. -..+.+.||+ |.++.+ ..|+++..++.+.+.++.....+..
T Consensus 168 ~g~-~~----------~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 234 (380)
T TIGR03588 168 VGN-CR----------YADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQ 234 (380)
T ss_pred CCC-cc----------ccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeee
Confidence 111 00 1135566765 887633 4688888777777665543221100
Q ss_pred --------ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC-C---ceEEE-eeecCchhhc
Q 011570 311 --------SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS-N---AGLFL-WMDLHHLLKE 376 (483)
Q Consensus 311 --------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~-~---~g~f~-~~~l~~~~~~ 376 (483)
+.+ ++++. +. . +++ +++..++-++..+++.+.|.++ ++....+ . .++++ .+.++.. .
T Consensus 235 ~~g~n~~m~~l-~aa~g--~~--q-L~~-l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~- 305 (380)
T TIGR03588 235 ELGFNYRMTDI-QAALG--LS--Q-LKK-LDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQE-F- 305 (380)
T ss_pred ccccccCccHH-HHHHH--HH--H-HHH-HHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCc-C-
Confidence 111 11111 00 0 111 3344444456667777888776 3443322 1 12222 2333311 0
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCC-------C---CCC---------CCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSF-------H---CPN---------PGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f-------~---~~~---------~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
. ....++.+.|. +.||.++..-.. . ... ...+++.+.. .++++++..++.|++++
T Consensus 306 -~-~~r~~l~~~L~-~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 306 -G-CTRKEVFEALR-AAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred -C-CCHHHHHHHHH-HCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 0 11236666664 669987643211 0 000 1458887754 58999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.1e-17 Score=160.74 Aligned_cols=325 Identities=14% Similarity=0.189 Sum_probs=214.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCc-ChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP-GFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~-~~~~~~~~~~G~~ 167 (483)
.|.......+|.++++++++ .+.++.++.++.++++++...++|||.| +..+|. .....+... |+.
T Consensus 73 ~Yagd~s~~~LE~~vAe~lG----------~e~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~-Ga~ 139 (460)
T PRK13237 73 AYAGSRNFYHLEETVQEYYG----------FKHVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELN-GGI 139 (460)
T ss_pred hhcCCCcHHHHHHHHHHHHC----------CCeEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhC-CcE
Confidence 48777788999999999987 3579999999999998877778999965 444333 333335554 876
Q ss_pred EEEeecC--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 LVPVVCD--------SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 ~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
.+-+..+ ...++.+|++.++++|++.. ..++++|.+.+++|.. |..+|.+++++|.++|++||+.||+|
T Consensus 140 fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~D 217 (460)
T PRK13237 140 FVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFD 217 (460)
T ss_pred EEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEE
Confidence 6555322 22357899999999997521 1355678888899988 79999999999999999999999999
Q ss_pred cccccC--ccC----CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh------
Q 011570 239 EIYAAT--VFT----KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS------ 306 (483)
Q Consensus 239 eay~~~--~~~----~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~------ 306 (483)
.+.... +|- ..-.-.++..+..++. .+ ...++.|++|.++.+- -|++++.++++.+.++....
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~-aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~ 292 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SY-ADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMP 292 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhcc--Cc-CcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCc
Confidence 998632 010 0001123333322221 12 2345668999987551 38999988888887766532
Q ss_pred -cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch---hhccChHHH
Q 011570 307 -FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL---LKEQTYEAE 382 (483)
Q Consensus 307 -~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~---~~~~~~~~~ 382 (483)
++..+.-...+++.-+.+.-. .+|+..+ .+..++|.+.|.+.|+++..|.||--++++.... +....+..
T Consensus 293 tygg~~grd~~alAvgl~E~~~-~~y~~~r----i~~~~~l~~~L~~~Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~- 366 (460)
T PRK13237 293 SYGGMAGRDMEAMAIGIEESVQ-YEYIEHR----VGQVRYLGEKLLAAGVPIVEPVGGHAVFLDARRFLPHLPQDQFPA- 366 (460)
T ss_pred CCCChhhhHHHHHHhHHHhhch-HHHHHHH----HHHHHHHHHHHHHCCCceecCCCceEEEEEhHHhCCCCCcccChH-
Confidence 122222233344433332111 1334333 3345788999999999999999998888876442 22233333
Q ss_pred HHHHHHHHHhcCeE-eeCCCCCCCC-----C-----CCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhh
Q 011570 383 MALWRVIINEVKLN-VSPGSSFHCP-----N-----PGWFRVCFAN--MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~-v~pg~~f~~~-----~-----~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..++..|..+.||. +--|+..... . -..+|+++.. .|.++++...++|..+.++...
T Consensus 367 ~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~ 436 (460)
T PRK13237 367 QALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHRED 436 (460)
T ss_pred HHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhh
Confidence 37888888898985 3334432111 0 1359999965 3999999999999987776543
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-17 Score=155.82 Aligned_cols=302 Identities=17% Similarity=0.152 Sum_probs=193.3
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH--HhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD--LRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~--~~~~~G~~~~~v~ 172 (483)
|..+..+++.+++.+.++ .+.++++.++|++..+++.+.++||+.|++..-.|-...++ +....++. +++
T Consensus 32 G~D~~~~~~e~~~ae~~g------~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~--~~~ 103 (342)
T COG2008 32 GEDPTTNALEQRIAELFG------KEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYTDECGAPEFFGGGQ--KLP 103 (342)
T ss_pred CCCHHHHHHHHHHHHHhC------CceEEEecCccHHHHHHHHHhcCCCCeEEEeccccceecccCcHHHHcCCc--eec
Confidence 445666666666666554 28999999999999999999999999999998877544332 22222222 333
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
..+..+..++++.+++.|+...-+...++++++.|++|-.|+++|.+++++|.++|+++|+.+..|.+-....... ..
T Consensus 104 ~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~va-lg- 181 (342)
T COG2008 104 IVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVA-LG- 181 (342)
T ss_pred cCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHH-cC-
Confidence 3333456899999999987622134456677777777788999999999999999999999999999874322111 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hcCCC---ChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SFGLV---SSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~~~~---s~~~q~~~~~~l~~~~~~ 328 (483)
++...+.. ...++.-++||..+.| +|.|+..+..+.+.++.++ ..+.. +.+..+....+|+++-|.
T Consensus 182 ~~~~~~~~-------~~D~v~~~~tK~g~~~---~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~~~~ 251 (342)
T COG2008 182 VALKTIKS-------YVDSVSFCLTKGGGAP---VGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDDVWR 251 (342)
T ss_pred CCHHHHHh-------hCCEEEEecccCCcce---eeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhccHHH
Confidence 34444432 2223445889987655 4877776666665544333 22221 222223333445554331
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
...++-.+...+|.+.|+.. |+++..|.-.+.++++++...- +...+... +.+.|+.+.++.
T Consensus 252 -----~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~i-----~~l~~~~~-~~~~~~~~~~~~------ 314 (342)
T COG2008 252 -----LAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESAI-----EALRLAGA-LFYRGVLIGAHG------ 314 (342)
T ss_pred -----HHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHHH-----HHHHhhch-hheeeeeccCCC------
Confidence 11222233467788888854 9988775555688999985211 11122222 223455544332
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
..+|+..++ ++++++++++..++.++
T Consensus 315 -~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 315 -EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred -ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 359999987 69999999999988764
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-17 Score=147.79 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=220.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE--EEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI--VMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRW 162 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i--~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~ 162 (483)
+.|-+.-|++.++.+.++.+-.... ..+..+.+ +=+-+++.++.+....| +. ...|.+..|+|......++.
T Consensus 68 HEYLpi~Gl~~F~~~A~el~lg~~s--~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~ 144 (410)
T KOG1412|consen 68 HEYLPILGLPTFTKAATELLLGADS--PAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEK 144 (410)
T ss_pred chhccccCchhhhhhhHHHhcCCCc--hhhhhccccceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHH
Confidence 5688888999999999888643211 11233332 22455666776665443 33 45799999999999999988
Q ss_pred hcC-cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE-EEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 163 RTG-VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 163 ~~G-~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i-~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
. | .++..++.-+.+.-.+|++.+.+.|+.+ ..+.| ++..+ |||||.-.+.|++..|++..+..+.+.+.|-
T Consensus 145 a-Gf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A-----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDi 218 (410)
T KOG1412|consen 145 A-GFTTVATYPYWDAENKCVDLEGFLSDLESA-----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDI 218 (410)
T ss_pred c-CCceeeeeeeecCCCceecHHHHHHHHhhC-----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeeh
Confidence 6 8 5566666655556679999999998864 33444 44444 9999999999999999999999999999999
Q ss_pred ccccCccCC-CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEE--EecChHHHHHHH-H---h--hhcCCC
Q 011570 240 IYAATVFTK-ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGII--YSYNDQVVSCAR-K---M--SSFGLV 310 (483)
Q Consensus 240 ay~~~~~~~-~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~l--i~~~~~l~~~~~-~---~--~~~~~~ 310 (483)
+|.++.-++ +.....+....+ ....++++.||+|.||+-+-|+|.+ +..+...+..+. . . ..+..+
T Consensus 219 AYQGfASGD~~~DawAiR~fV~-----~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNP 293 (410)
T KOG1412|consen 219 AYQGFASGDLDADAWAIRYFVE-----QGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNP 293 (410)
T ss_pred hhcccccCCccccHHHHHHHHh-----cCCeEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCC
Confidence 999853332 111233333443 3356889999999999999999944 334444333222 1 1 122334
Q ss_pred ChHHHHHHHHhcCChhHHHHHH---HHHHHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFI---AESAKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~---~~~~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
+.....+++.+|..++..++|. +.+..++++.|..|++.|..++ |.-...+-|||-+--+..
T Consensus 294 PAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp----------- 362 (410)
T KOG1412|consen 294 PAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTP----------- 362 (410)
T ss_pred cchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCH-----------
Confidence 4456677899999877655554 4455678888888888888773 555567778888755542
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.-.+.|.+++.|.+.+ +| ||+++..+...++...++|.++++...
T Consensus 363 ~qV~~li~~h~vyLl~--------~G--RInisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 363 AQVDHLIENHKVYLLS--------DG--RINISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred HHHHHHHHhceEEEec--------CC--cEeeeccccccHHHHHHHHHHHHHhhc
Confidence 3356788888998764 23 899988888889999999988887654
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.2e-17 Score=165.03 Aligned_cols=290 Identities=15% Similarity=0.130 Sum_probs=184.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----------CCCCeEEEeCCCCcCh-HHHHhhhc
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----------DPGDAFLVPTPYYPGF-DRDLRWRT 164 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~P~y~~~-~~~~~~~~ 164 (483)
..+|.+.+++++ + .+.+++++++++++..++..+. ...+.|+...-+|.+. ...+...
T Consensus 81 ~~~l~~~l~~~~----~------~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~- 149 (401)
T TIGR01885 81 FGEFAEYVTKLF----G------YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMS- 149 (401)
T ss_pred HHHHHHHHHhhc----C------CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCc-
Confidence 345555555553 2 3689999999999999998752 2246788888887653 3433321
Q ss_pred Cc------------EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCH-HHHHHHHHHHhhc
Q 011570 165 GV------------QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDR-ETLKDIVSFINEK 231 (483)
Q Consensus 165 G~------------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~-~~l~~i~~~a~~~ 231 (483)
|. .++.++. .|++.|++.+++. +.++.+|++..+++++|.+.+. +.+++|.++|++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~ 219 (401)
T TIGR01885 150 TDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH 219 (401)
T ss_pred CCcccccccCCCCCCceEeCC-------CCHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 21 1222221 2688999888642 2467778877789999998864 4699999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-hh-hcCC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-MS-SFGL 309 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~~-~~~~ 309 (483)
|+++|+||+|.++.+.+ . +.+. .... ..+.++ ++||.++..|+|+|+++++ +++.+.+.. .. ....
T Consensus 220 ~~lli~DEv~~g~g~~G-~-~~~~-~~~~-----~~~di~---~~gK~l~~g~~~ig~v~~~-~~i~~~~~~~~~~~t~~ 287 (401)
T TIGR01885 220 NVLLIADEIQTGLGRTG-K-LLCV-DHEN-----VKPDIV---LLGKALSGGVYPVSAVLAD-DDVMLTIKPGEHGSTYG 287 (401)
T ss_pred CCEEEEechhhCCCccc-h-hhHH-hhcC-----CCCCEE---EeeccccCCCCCcEEEEEc-HHHHhhccCCCCCCCCC
Confidence 99999999997643333 2 1121 1111 112232 5789998666999999994 556555432 11 1123
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee---ecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC---LKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+++++.++.+.|+.. ++ ....+++++..+++.+.|++++..+ ..+.|. +..+.++.... . ....+++
T Consensus 288 ~~p~~~~aa~a~L~~i---~~--~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~-~~~i~~~~~~~--~-~~~~~l~ 358 (401)
T TIGR01885 288 GNPLACAVAVAALEVL---EE--EKLAENAEKLGEIFRDQLKKLPKPIITEVRGRGL-LNAIVIDESKT--G-RTAWDLC 358 (401)
T ss_pred CCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhccCCceeEEeecCe-eEEEEeccCcc--h-hHHHHHH
Confidence 4677777776666432 11 1223445556688888888774332 234554 44444432110 0 1234677
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
..|. ++||.+.|+. ++.+||+... ++++++++++++|++++
T Consensus 359 ~~l~-~~Gv~v~~~~------~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 359 LKLK-EKGLLAKPTH------GNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred HHHH-hCCEEEEecC------CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 7776 5699998742 4689999854 69999999999998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=162.05 Aligned_cols=288 Identities=19% Similarity=0.294 Sum_probs=174.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC------CCeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP------GDAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~------gd~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
.++|.+.|-+++.. -|. ...+...|++++|+++.++.++.+|... --.|+...|.|+.|....... .-...
T Consensus 45 s~eL~~~Ir~LH~~-VGN-Avt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f-~s~~y 121 (363)
T PF04864_consen 45 SPELERQIRRLHRV-VGN-AVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFF-DSRLY 121 (363)
T ss_dssp -HHHHHHHHHHHHH-H-S-B--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT--BTTE
T ss_pred cHHHHHHHHHHHHH-hcc-ccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhc-cccCc
Confidence 57888888887764 342 2245557999999999999999998533 137999999999998876544 22222
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE-EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i-~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
...-|. ..|. +- +..-..| ++|+||||.|.+ .+.++ +..+..+|.|-||-+-.|+.
T Consensus 122 ~w~Gda-~~~~-~~-------------~~~~~~IElVTSPNNPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTp 178 (363)
T PF04864_consen 122 KWAGDA-SNFK-NS-------------DNPSPYIELVTSPNNPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTP 178 (363)
T ss_dssp EEEEEC-CCGT-T--------------S-CCGEEEEEESS-TTT-----------SS---TTTEEEEEEE-TT-STTTS-
T ss_pred cccccH-Hhhc-cC-------------CCCCCeEEEEeCCCCCcccc-----cchhc---CCCCcceeeeeeeecccccc
Confidence 222111 1221 10 0122345 999999999997 44455 34556789999997544443
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCC--
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSD-- 324 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~-- 324 (483)
+..- .+..|.+.|+||.-|-+|.|+||.+..++.+.+.+..+... .++|.=+|.-++.+|..
T Consensus 179 ------I~~~--------aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~ 244 (363)
T PF04864_consen 179 ------ITAP--------ADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVL 244 (363)
T ss_dssp --------S---------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHH
T ss_pred ------cCCC--------CCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHH
Confidence 2221 14557889999999999999999999888887776554333 34777777766655542
Q ss_pred --hhHH---HHHHHHHHHHHHHHHHHHHHhhhcCC-cee--ecC-----------CceEEEeeecCchhhccChHHHHHH
Q 011570 325 --DQFV---EKFIAESAKRIAERHKAFTWGLSQVG-IGC--LKS-----------NAGLFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 325 --~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~--~~~-----------~~g~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
.+.. .++..--++.+++|...|.+.+..-+ +.. ..| ...-|.|+++....+. +
T Consensus 245 ~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~-------D- 316 (363)
T PF04864_consen 245 DGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDE-------D- 316 (363)
T ss_dssp HHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGS-------S-
T ss_pred hcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcccc-------c-
Confidence 0000 02345556778888889998887642 111 111 1234999999853211 2
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|...|+++||..+.|..|+. ++.++|||+- .++++++.+++||..+
T Consensus 317 C~~~l~~~~I~tr~G~~fga-~~ryVRlSml-~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 317 CYAVLREAKIITRSGVLFGA-DSRYVRLSML-KRDDDFDQLLERLSKL 362 (363)
T ss_dssp HHHHHHCTTEEEEEGGGGTS--TTEEEEESS-S-HHHHHHHHHHHHCC
T ss_pred HHHHHHhCCcccCCCCccCC-CCCeEEEecc-CCHHHHHHHHHHHHhh
Confidence 55567789999999999986 5779999996 4899999999999754
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-17 Score=166.85 Aligned_cols=287 Identities=13% Similarity=0.108 Sum_probs=173.5
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC---------CCC-eEEEeCCCCcChHHHHhhhcCcE------------EEEeecCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD---------PGD-AFLVPTPYYPGFDRDLRWRTGVQ------------LVPVVCDSS 176 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~---------~gd-~Vlv~~P~y~~~~~~~~~~~G~~------------~~~v~~~~~ 176 (483)
.+.+++++++++++..++..... ++. .|+...-+|.+.........+-. +..++
T Consensus 132 ~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~---- 207 (474)
T PLN02624 132 YDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVD---- 207 (474)
T ss_pred CCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeC----
Confidence 36899999999999988865432 133 57777777766533222111111 11121
Q ss_pred CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHH-HHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 177 NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRE-TLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 177 ~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~-~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
| -|++.+++.++. .+.++.+|++..++|++|.+++.+ .+++|.++|++||+++|+||+|.++...+ . ....
T Consensus 208 --~-~d~~~l~~~l~~---~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG-~-~~a~ 279 (474)
T PLN02624 208 --F-GDLDALEKIFEE---DGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG-K-MLAC 279 (474)
T ss_pred --C-CCHHHHHHHHHh---CCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCc-c-hhhH
Confidence 1 268888888864 234688889999999999988776 59999999999999999999998743333 2 1121
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChh--HHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQ--FVEKF 331 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~--~~~~~ 331 (483)
.... ....++ ++||.+|.+++++|+++++ +++...+..... ....+++++.++.+.|+... .+.++
T Consensus 280 -~~~~-----i~pDiv---~lsK~lggG~~pigav~~~-~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~ 349 (474)
T PLN02624 280 -DWEE-----VRPDVV---ILGKALGGGVIPVSAVLAD-KDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAER 349 (474)
T ss_pred -HhcC-----CCCCEE---EecccccCCCCcceeeeec-HHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHH
Confidence 1111 112222 4689999666999999994 455544432221 12357777777766664211 11222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEE
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWF 411 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~i 411 (483)
..++.+.++++.+.+.+.+.. .+....+.| .++.+.+..... ......+++..|. ++||.+.|+. .+++
T Consensus 350 ~~~~~~~l~~~L~~l~~~~~~-~i~~vrg~G-~~~~i~l~~~~~--~~~~a~~~~~~L~-e~GV~v~p~~------~~~l 418 (474)
T PLN02624 350 SAKLGQELRDQLQKIQKQFPK-LIKEVRGRG-LLNAVVLNSPKL--GPVSAYDVCLKLK-ERGLLAKPTH------DTII 418 (474)
T ss_pred HHHHHHHHHHHHHHHHHhCCC-ceEEEEeeE-EEEEEEecCCCc--ChHHHHHHHHHHH-hCCeEEecCC------CCEE
Confidence 233333333333333222221 133334454 455555542110 0112346777765 5699998752 4689
Q ss_pred EEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 412 RVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 412 Ris~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
||++.. ++++++++++++|++++++..
T Consensus 419 R~~p~l~~t~e~id~~l~~L~~~l~~~~ 446 (474)
T PLN02624 419 RLAPPLSISEDELQECSKALSDVLEHDL 446 (474)
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHHH
Confidence 999754 699999999999999886643
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=162.47 Aligned_cols=301 Identities=17% Similarity=0.146 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C--C-CCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D--P-GDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~--~-gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.+....+++.+.+..+ ..+.+++++++++++..++.... + + ..+|+....+|.+.........|..
T Consensus 81 ~~~~~~la~~L~~~~~-----~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~ 155 (408)
T PRK04612 81 SAPPLKLAEELVTASR-----FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQP 155 (408)
T ss_pred CHHHHHHHHHHHhhCC-----CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCc
Confidence 3445566666654321 13689999999999999886543 1 1 2468999998877644332221221
Q ss_pred EEE---eecCCC---CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC--HHHHHHHHHHHhhcCcEEEEcc
Q 011570 168 LVP---VVCDSS---NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD--RETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 168 ~~~---v~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~--~~~l~~i~~~a~~~~~~iI~De 239 (483)
... -+.... -.| .|++.+++.+.. +..+.++..|.+++|.+++ .+.+++|.++|++||+++|+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~------~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DE 228 (408)
T PRK04612 156 KYQEGYEPLPGGFRYVDF-NDVEALEAAMAG------GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDE 228 (408)
T ss_pred ccccCCCCCCCCceEcCC-CCHHHHHHhhCC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 110 011100 011 267888877742 3456778889888887766 6789999999999999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHH
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHL 317 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~ 317 (483)
+|.++...+ . + .... ..+.+..+.||||.+| +|+|+||++++ +.+.+.+.... ..+..+++++.+
T Consensus 229 v~tg~gr~G-~-~--~a~~-------~~~~~pdi~t~~K~l~-~G~piga~~~~-~~~~~~~~~~~~~~t~~~~p~~~aa 295 (408)
T PRK04612 229 IQCGMGRTG-T-L--FAHW-------QEQVTPDIVTLAKALG-GGFPIGAMLAG-PKVAETMQFGAHGTTFGGNPLAAAV 295 (408)
T ss_pred cccCCCcCC-c-h--hhhh-------hcCCCCCEEEEcchhc-CCCceEEEEEC-HHHHhhhcCCCcCCCCCCCHHHHHH
Confidence 998753433 2 1 1111 1233455679999998 99999999985 45555543211 123467888888
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhc
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~ 393 (483)
+.+.|+.-. + ....++++++-+++.+.|+++ ++......-|+++.+.+..... .....+...+. ++
T Consensus 296 a~a~L~~~~---~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~----~~a~~i~~~l~-~~ 365 (408)
T PRK04612 296 ARVALRKLA---S--PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHA----GQAGAILDLAA-EH 365 (408)
T ss_pred HHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchh----hHHHHHHHHHH-HC
Confidence 777774321 1 123334444445555555443 3222223335677777642110 11235555555 56
Q ss_pred CeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 394 KLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 394 gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
||.+.+. +.+.+|++... ++++++++++++|++++++..
T Consensus 366 Gvlv~~~------g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 366 GLLLLQA------GPDVLRFVPALNLTDAELADGLARLRLALADYV 405 (408)
T ss_pred CeEEeeC------CCCEEEEcCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 9998763 23679999865 599999999999999997754
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=161.65 Aligned_cols=309 Identities=17% Similarity=0.137 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChh-HHHHHHHHHhcC---CCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGAT-GAHETVAFCLAD---PGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~-~al~~~~~~l~~---~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
...+.+.+.+.+.+..| +. .+..++++|++ .++.+++.++-. +||.|+++.-+|.....++... |++++.
T Consensus 103 ~~~l~~~~e~~~~~~~G----~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~-G~~pv~ 177 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLG----LRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA-GFEPRV 177 (444)
T ss_pred HHHHHHHHHHHHHHHcC----CCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc-CCeEEE
Confidence 34555566665555555 22 24688888888 577777776642 5899999999999988888886 999999
Q ss_pred eec-CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 171 VVC-DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 171 v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
++. .++++|.+|++.|+++|.+. +.+.+++++++|+ |+.....+++++|.++|++||+++|+|++|+.. .
T Consensus 178 Vd~~~d~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~---~- 248 (444)
T TIGR03531 178 IETVLDGDELTTDVEDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQ---S- 248 (444)
T ss_pred eeeeecCcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCc---C-
Confidence 995 23457999999999999742 1245667777776 555556677999999999999999999999842 1
Q ss_pred CCcchHHHhh-hhccccCCC-eEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhH
Q 011570 250 SSFVSIAEII-DQDIACNRN-LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 250 ~~~~s~~~l~-~~~~~~~~~-~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 327 (483)
. ....+. ... ..+ -.+++.|++|.+.++|. .|.+++.++.+.+.+.........+++.|.+.+.++..+
T Consensus 249 ~---~~~~~~~~g~---~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~~G-- 319 (444)
T TIGR03531 249 N---KYMELINKAI---KVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLSLG-- 319 (444)
T ss_pred h---hhhhhhhccc---cccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHHhC--
Confidence 1 111111 000 111 24667799999988776 334446567777666554333334456777666665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCe----Eee
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL----NVS 398 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV----~v~ 398 (483)
.+.+++..++..++++++.+.|.++ |.++... .....+-+.+.... +. +...+-..|. ..+| .|.
T Consensus 320 -~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~~---~~~~~g~~l~-~~~v~g~r~v~ 393 (444)
T TIGR03531 320 -SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-GK---DPTMLGSMLY-SRRVTGPRVVT 393 (444)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-cc---CHHHHHHHHH-hCCCCCceeec
Confidence 2345666666777777777777664 6666644 33344445554321 11 1223444444 3355 245
Q ss_pred CCC-------C---CCCCCC----CEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 399 PGS-------S---FHCPNP----GWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 399 pg~-------~---f~~~~~----~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
||. . |+...+ .|+=++.+- ++.++++.++++|.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 394 NGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred CCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 666 2 221111 133333321 6899999999999875
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-17 Score=166.91 Aligned_cols=275 Identities=12% Similarity=0.103 Sum_probs=175.4
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcCCC---CeEEEeCCCCcChHHH----HhhhcCcEE----EEeecCCCCCcccCHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLADPG---DAFLVPTPYYPGFDRD----LRWRTGVQL----VPVVCDSSNDFKVTMEA 185 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~~g---d~Vlv~~P~y~~~~~~----~~~~~G~~~----~~v~~~~~~~~~~d~~~ 185 (483)
.++++|++|+|++++++.++.++++++ +.|++....|+..... ++.. |+++ +.++.++ ++.+|++.
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~-g~~~~~~~~~~~~~~--~g~~~~~~ 160 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLTVEESMVQIEPRE--EETLRLED 160 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhc-CCCcccceEEeccCC--CCccCHHH
Confidence 578999999999999999999887664 3688888899874332 3343 8776 4555443 44678999
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcccc
Q 011570 186 LEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC 265 (483)
Q Consensus 186 l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~ 265 (483)
+++.++.. ++++++|++++++|.||.+.+ +++|.++|+++|+++++|++++. +. .+ .++.
T Consensus 161 l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~---G~-~~-id~~--------- 220 (406)
T TIGR01814 161 ILDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAV---GN-VP-LDLH--------- 220 (406)
T ss_pred HHHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEccccc---CC-cc-cccc---------
Confidence 98887531 347899999999999999999 88888999999999999999973 32 11 2222
Q ss_pred CCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhh------------------------cCCCChHHHHHHHH
Q 011570 266 NRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSS------------------------FGLVSSQTQHLIAT 320 (483)
Q Consensus 266 ~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~------------------------~~~~s~~~q~~~~~ 320 (483)
..+..+++.|.+|.++ -|| .|..+. ++.+......... .++.+.+...++.+
T Consensus 221 ~~gvD~~~~s~hK~l~g~pG--~~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~ 297 (406)
T TIGR01814 221 DWGVDFACWCTYKYLNAGPG--AGAFVH-EKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRG 297 (406)
T ss_pred cCCCCEEEEcCccccCCCCC--eEEEEe-hhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHH
Confidence 1245678899999863 345 443333 3322211100000 12223333333333
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CceeecCCc----eEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-----GIGCLKSNA----GLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----gi~~~~~~~----g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
+++-.. +.-.++.+++..+..+++.+.|.+. |+++..+.. +..+.+.++ .+ ..++.+.|.
T Consensus 298 al~~~~--~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~--~~------~~~~~~~L~- 366 (406)
T TIGR01814 298 SLDIFD--QAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP--VP------GKAVFQALI- 366 (406)
T ss_pred HHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec--CC------HHHHHHHHH-
Confidence 332110 1113445566666777777777653 366654421 224455555 11 125666665
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEec--cCCHHHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFA--NMDDRTMEIALSRITSFM 434 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~--~~~~e~l~~~l~~L~~~l 434 (483)
++||.+... .++.+|+|++ +.++++++.++++|++++
T Consensus 367 ~~gi~v~~~------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 367 KRGVIGDKR------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred HCCEEEecc------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 569987532 2358999994 469999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-16 Score=160.95 Aligned_cols=155 Identities=25% Similarity=0.298 Sum_probs=120.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|++.+|++.+ .+..++++++++++..++.++++|||+|+++.++|...... +... |++++.+
T Consensus 65 ~~~le~~lA~l~g----------~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~-G~~v~~v 133 (427)
T PRK05994 65 NAVLEERVAALEG----------GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSF-GWQVRWA 133 (427)
T ss_pred HHHHHHHHHHHhC----------CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhc-CcEEEEE
Confidence 4678888888865 23577888889999999999999999999999999864433 4444 9998887
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++.+ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|... +.. .
T Consensus 134 d~~-------d~~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~-~~~-~- 194 (427)
T PRK05994 134 DAD-------DPASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASP-YLI-R- 194 (427)
T ss_pred CCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccc-ccC-C-
Confidence 642 68889888853 7899999999999999998 788889999999999999999642 111 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS 292 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~ 292 (483)
++ .....+++.|++|.+|-+|-.+|.+++
T Consensus 195 --pl----------~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 195 --PI----------EHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred --cc----------ccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 11 113447889999999866666675554
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-17 Score=166.33 Aligned_cols=291 Identities=14% Similarity=0.118 Sum_probs=175.3
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEE----------EEeecCCCCCc---ccCH
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQL----------VPVVCDSSNDF---KVTM 183 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~----------~~v~~~~~~~~---~~d~ 183 (483)
.+.+++++++++++..++..... .++.|+..+++|+++...+....|... .+.+.. ...+ ..|+
T Consensus 106 ~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 184 (426)
T PRK00062 106 IEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFA-KHTLTAPYNDL 184 (426)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccc-cceEEcCCCCH
Confidence 56899999999999999987432 357899999999987633322111100 000000 0001 1378
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhc
Q 011570 184 EALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262 (483)
Q Consensus 184 ~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~ 262 (483)
+.+++.+... ..++.+|++..-...+|.+.+ .+.+++|.++|++||+++|+||+|.++ ..+ .. .. .+... .
T Consensus 185 ~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g-~~-~~-~~~~~-~ 256 (426)
T PRK00062 185 EAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVA-LG-GA-QGYYG-V 256 (426)
T ss_pred HHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccC-Cc-cH-HHHhC-C
Confidence 8888888642 235666666633344888876 888999999999999999999999875 222 21 12 12211 0
Q ss_pred cccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---h--cCCCChHHHHHHHHhcCChhHHHHHHHHHHH
Q 011570 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---S--FGLVSSQTQHLIATMLSDDQFVEKFIAESAK 337 (483)
Q Consensus 263 ~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (483)
.++ +.+|||.+| .|+++|++++ ++.+.+.+.... . .+..+++.++++.+.|+-... .+..++.++
T Consensus 257 ---~pD----i~~~gK~l~-~G~p~ga~~~-~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~-~~~~~~~~~ 326 (426)
T PRK00062 257 ---TPD----LTTLGKIIG-GGLPVGAFGG-RREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKE-PGFYEELEA 326 (426)
T ss_pred ---Ccc----hHhhhhHhh-CCCcceeeeE-HHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhc-chHHHHHHH
Confidence 122 358999998 9999999988 566666653211 1 123577777776666542110 112333333
Q ss_pred HHHHHHHHHHHhhhcCCceee-cCCceEEEeeecCch-hh------ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 338 RIAERHKAFTWGLSQVGIGCL-KSNAGLFLWMDLHHL-LK------EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~gi~~~-~~~~g~f~~~~l~~~-~~------~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
.....++.+.+.+.+.++... .+.| .++-+.+... .. .........+...++ ++||.+.|.. + +
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~vrg~G-~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~Gv~v~~~~-~-----~ 398 (426)
T PRK00062 327 LTKRLAEGLKEAAKKAGIPLTVNRVG-SMFGLFFTDEPVTNYADAKKSDTERFARFFHAML-DEGVYLAPSQ-F-----E 398 (426)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEec-ceEEEEEecCCCcchhhhccccHHHHHHHHHHHH-HCCeEeecCC-c-----C
Confidence 344444445554555565543 3444 4555555321 00 000011235666666 4699998742 2 2
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 410 WFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++++. ++++++++++++|++++.+.
T Consensus 399 ~~~~~~~-~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 399 AGFVSAA-HTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred ceeeecc-CCHHHHHHHHHHHHHHHHhh
Confidence 4677754 69999999999999988653
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-16 Score=158.24 Aligned_cols=310 Identities=12% Similarity=0.094 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcE--------
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQ-------- 167 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~-------- 167 (483)
+....+|+.+.+... . -..+.+++++++++++..++.... ....+|+....+|.+.........|..
T Consensus 83 ~~~~~la~~l~~~~p--~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~ 159 (421)
T PRK06777 83 ASYVTLAERINALAP--I-DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFG 159 (421)
T ss_pred hHHHHHHHHHHHhCC--C-CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCC
Confidence 344555555554321 0 124689999999999998886542 223568888888877654333221210
Q ss_pred -----EEEeecCCCC-C--cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 -----LVPVVCDSSN-D--FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 -----~~~v~~~~~~-~--~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
+..++.++.. + ..-+++.+++.+.+. ....++.+|++....++.|. +.+.+.+++|.++|++||+++|+|
T Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D 238 (421)
T PRK06777 160 PFPGSIFHALYPNELHGVSVEEALSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIAD 238 (421)
T ss_pred CCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 1111211100 0 011355666666421 01235666666544777885 678999999999999999999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHH
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQH 316 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~ 316 (483)
|+|.++.+.+ . +.+...+.. .++ ++ ++||.+| +|+|+||+++ ++.+.+.+.... ..+..+++++.
T Consensus 239 Ev~tg~gr~g-~-~~~~~~~~~-----~pD--iv--~~sK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~p~~~a 305 (421)
T PRK06777 239 EVQTGFARTG-K-LFAMEYYDV-----KPD--LI--TMAKSLG-GGMPISAVVG-RAEVMDAPAPGGLGGTYAGNPLAVA 305 (421)
T ss_pred chhhCCccCC-c-hhhhhhcCC-----CCC--EE--eeehhhc-CCCceEEEEE-cHHHHhccCCCCCCCCCCcCHHHHH
Confidence 9999864444 2 223222211 123 22 7999999 9999999999 466665543221 12346888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----C-ceeecCCceEEEeeecCchh-hccChHHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----G-IGCLKSNAGLFLWMDLHHLL-KEQTYEAEMALWRVII 390 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g-i~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~~~~~Ll 390 (483)
++.+.|+.. ++ ....++++++.+++.+.|+++ + +....+.|.+|. +.+.... ......-...+...++
T Consensus 306 aa~a~L~~~---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~-i~~~~~~~~~~~~~~~~~l~~~~~ 379 (421)
T PRK06777 306 AALAVLDVI---AE--EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA-VEFNDPQTGKPSPEFTRQYQRQAL 379 (421)
T ss_pred HHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEE-EEEecCccCCccHHHHHHHHHHHH
Confidence 888877521 11 234445556666666666553 2 334566776554 4442210 0011111223444445
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
++||.+.|+..|+ +++||++.. .+++++++++++|.+++.
T Consensus 380 -~~Gv~i~~~~~~g----~~lr~~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 380 -EEGLLLLSCGVHG----NVIRFLYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred -hCCeEEeecCCCC----CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 4699999987663 589999965 599999999999998874
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-16 Score=157.25 Aligned_cols=312 Identities=12% Similarity=0.078 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc--------
Q 011570 98 EFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------- 166 (483)
+....+|+.+.+..+ -. .+.+++++++++++..++.... ....+|+....+|.+.........|.
T Consensus 83 ~~~~~la~~l~~~~p----~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~ 158 (425)
T PRK07495 83 ENYVRLAERLNALVP----GDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGF 158 (425)
T ss_pred HHHHHHHHHHHHhCC----CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCC
Confidence 344556666554322 11 2589999999999999886542 22357888888887654222111110
Q ss_pred -----EEEEeecCCCCCcccC----HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCc-CCCCHHHHHHHHHHHhhcCcEE
Q 011570 167 -----QLVPVVCDSSNDFKVT----MEALEAAYEKAQESNIRIKGVLITNP-SNPLG-TFLDRETLKDIVSFINEKNIHL 235 (483)
Q Consensus 167 -----~~~~v~~~~~~~~~~d----~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG-~~~~~~~l~~i~~~a~~~~~~i 235 (483)
.++.+|.+... ...+ ++.+++.+.+. ..+.++.+|++... +| +| .++|.+.+++|.++|++||+++
T Consensus 159 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~-~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~ll 235 (425)
T PRK07495 159 GAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKAD-VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILL 235 (425)
T ss_pred CCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhc-cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEE
Confidence 12333332111 1122 33445554321 11235666655533 45 78 4579999999999999999999
Q ss_pred EEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--hhcCCCChH
Q 011570 236 VCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--SSFGLVSSQ 313 (483)
Q Consensus 236 I~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~~~~~~s~~ 313 (483)
|+||+|.++...+ . +...... +.+.-+.||||.++ +|+|+|++++ ++++.+.+... ...+..+++
T Consensus 236 I~DEv~tG~gr~G-~-~~a~~~~---------gv~pDi~tlsK~l~-~G~pigav~~-~~~i~~~~~~~~~~~T~~~~pl 302 (425)
T PRK07495 236 IADEVQTGFARTG-K-LFAMEHH---------EVAADLTTMAKGLA-GGFPLAAVTG-RAEIMDAPGPGGLGGTYGGNPL 302 (425)
T ss_pred EEechhhcCCcCC-C-ceeeccc---------CCCCCEEeehhhhc-CCccceEEEE-cHHHHhccCCCCcCCCCCCCHH
Confidence 9999998753433 2 2121111 22223569999998 9999999999 55665544321 122346778
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh-ccChHHHHHHHHHH
Q 011570 314 TQHLIATML---SDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK-EQTYEAEMALWRVI 389 (483)
Q Consensus 314 ~q~~~~~~l---~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~-~~~~~~~~~~~~~L 389 (483)
+++++.+.+ .+++ +.++.+++.++++++.+.+.+.+ +.......-|+++|+++..... .........+...+
T Consensus 303 ~~aaa~a~l~~l~~~~-l~~~~~~~g~~l~~~L~~l~~~~---~~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~ 378 (425)
T PRK07495 303 GIAAAHAVLDVIEEED-LCERANQLGNRLKQRLASLRETV---PEIADIRGPGFMNAVEFNDADSGLPSAEFANRVRLKA 378 (425)
T ss_pred HHHHHHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhhC---CCeeeeecCceEEEEEEecCCCCCccHHHHHHHHHHH
Confidence 877544443 3333 23344444444444433333322 2111122337899999853211 00111123455556
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+ ++||++.+... ..+.+||.... ++++++++++++|.+++++.+
T Consensus 379 ~-~~Gvl~~~~g~----~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 379 L-EKGLILLTCGV----HGNVIRFLAPITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred H-HCCeEEeecCC----CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHh
Confidence 6 56999875321 13679999876 599999999999999997654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-16 Score=154.21 Aligned_cols=287 Identities=21% Similarity=0.238 Sum_probs=179.8
Q ss_pred ccCCCCC--CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh--
Q 011570 88 AIFQDYH--GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR-- 163 (483)
Q Consensus 88 ~~Y~~~~--g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-- 163 (483)
..|+... -...|.+.||+..+ .+.+++++++..|+..++.+++++||+|+++...|.+....++..
T Consensus 47 ~~Y~R~gnPt~~~le~~la~Le~----------g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~ 116 (386)
T PF01053_consen 47 YIYSRYGNPTVRALEQRLAALEG----------GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLP 116 (386)
T ss_dssp CSBTTTC-HHHHHHHHHHHHHHT-----------SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHH
T ss_pred cceeccccccHHHHHHHHHHhhc----------ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhc
Confidence 3565542 12355555555543 478999999999999999999999999999999998877666542
Q ss_pred -cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC-cEEEEcccc
Q 011570 164 -TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN-IHLVCDEIY 241 (483)
Q Consensus 164 -~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~-~~iI~Deay 241 (483)
.|+++..++. -|++++++++++ ++++|++.+|.||+..+.+ +++|+++|+++| +++|+|..+
T Consensus 117 ~~gv~v~~~d~-------~d~~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 117 RFGVEVTFVDP-------TDLEALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp HTTSEEEEEST-------TSHHHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTT
T ss_pred ccCcEEEEeCc-------hhHHHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccc
Confidence 4899888753 378999999874 8999999999999988888 899999999998 999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecC-hHHHHHHHHhh-hcC-CCChHHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYN-DQVVSCARKMS-SFG-LVSSQTQHL 317 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~-~~l~~~~~~~~-~~~-~~s~~~q~~ 317 (483)
+...+- . + + ..+..|++.|.+|.++ -...=.|.+++.+ +.+.+.++... ..+ .+++.....
T Consensus 181 atp~~~--~---p---L-------~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~l 245 (386)
T PF01053_consen 181 ATPYNQ--N---P---L-------ELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWL 245 (386)
T ss_dssp THTTTC------G---G-------GGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHH
T ss_pred cceeee--c---c---C-------cCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHH
Confidence 653221 1 1 1 1244578899999885 2334477888765 46665554433 233 234444344
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecC----------------CceEEEeeecCchhhccCh
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKS----------------NAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~----------------~~g~f~~~~l~~~~~~~~~ 379 (483)
+..-++. +..+.++..++...+.+.|+++ .+. ++.| .+|-.+.+++....
T Consensus 246 l~rgl~T-------l~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~----- 313 (386)
T PF01053_consen 246 LLRGLRT-------LPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE----- 313 (386)
T ss_dssp HHHHHTT-------HHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH-----
T ss_pred HhcCCCc-------HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch-----
Confidence 4444443 3445566677888899999887 342 3333 22236677777532
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCC-------------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHC-------------------------PNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~-------------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+-+..+++.-.+. ..|..+|. -.++.||||+|. |+.+.+++.|++++
T Consensus 314 ----~~~~~f~~~l~l~-~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl---Ed~~dLi~Dl~~AL 385 (386)
T PF01053_consen 314 ----EAARRFLDALKLF-SIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL---EDPDDLIADLEQAL 385 (386)
T ss_dssp ----HHHHHHHHH-SSS-EESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S---S-HHHHHHHHHHHH
T ss_pred ----hhhHhHHhhhhhH-hhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc---CCHHHHHHHHHHhc
Confidence 1122333332321 11212221 124679999994 56777888887776
Q ss_pred H
Q 011570 435 L 435 (483)
Q Consensus 435 ~ 435 (483)
+
T Consensus 386 ~ 386 (386)
T PF01053_consen 386 E 386 (386)
T ss_dssp H
T ss_pred C
Confidence 4
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-16 Score=159.80 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~ 172 (483)
..+|++.+|++.+ .+..++|+++++|+.+++.+++++||+|+++...|......+.. ..|++++.++
T Consensus 66 ~~~le~~lA~l~g----------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 135 (433)
T PRK08134 66 VAVLEERVAALEG----------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVK 135 (433)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEEC
Confidence 5788888888876 23468899999999999999999999999999999866554432 1399988887
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+ |++.++++|++ ++++|++.+|+||||.+.+ +++|+++|+++|+++|+|.++..... .
T Consensus 136 ~~-------d~~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-~---- 194 (433)
T PRK08134 136 PG-------DIDGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-L---- 194 (433)
T ss_pred CC-------CHHHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-C----
Confidence 53 68899998864 8999999999999999999 88889999999999999999864221 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS 292 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~ 292 (483)
.++ .+ ...+++.|.+|.+|-+|-.+|.++.
T Consensus 195 ~pl-~~---------GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 195 RPF-EH---------GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred Cch-hc---------CCCEEEeccccccCCCCCceEEEEE
Confidence 121 12 4457888999999877776776654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=153.56 Aligned_cols=349 Identities=18% Similarity=0.241 Sum_probs=235.7
Q ss_pred CCCCCCCCCcccccchh------hhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhC
Q 011570 39 YHPTKNPNGVIQMGLAE------NLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRG 112 (483)
Q Consensus 39 ~~~~~~~~~~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g 112 (483)
|..+.||.. |||+.+. .++.++.++++-.+... .+..-.|-+..|.+++.+..+++.-..
T Consensus 46 fk~D~n~~K-iNLgvGaYRdd~gKp~vL~~VrkAE~ql~~-----------~~ldKEYlpI~Gl~eF~k~sakLa~G~-- 111 (427)
T KOG1411|consen 46 FKKDPNPKK-INLGVGAYRDDNGKPYVLPSVRKAEQQLAS-----------LSLDKEYLPITGLAEFNKLSAKLALGD-- 111 (427)
T ss_pred HhcCCCcce-eeecccceecCCCCeeeeHHHHHHHHHHhh-----------hcccchhccccchHHHHHHHHHHhhcC--
Confidence 345566655 7888873 23345666655443211 112236889999999999999986422
Q ss_pred CCCC-cCCCcEEE--eCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHH
Q 011570 113 NRIT-FDPDRIVM--SGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALE 187 (483)
Q Consensus 113 ~~~~-~~~~~i~i--t~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 187 (483)
..+ +....|+. |-++|.++.+....+ .-++..|.+++|+|+.....++.. |+.+..+..-+...-.+|.+.+.
T Consensus 112 -~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~a-g~~~~~yrYyd~~t~gld~~g~l 189 (427)
T KOG1411|consen 112 -NSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDA-GLPVKFYRYYDPKTRGLDFKGML 189 (427)
T ss_pred -CchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCcccccc-CcceeeeeeccccccccchHHHH
Confidence 122 23334444 344566666554333 457889999999999999988886 99987777655556678988888
Q ss_pred HHHHHHHhcCCceeEEEEeCC--CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC-CCCcchHHHhhhhccc
Q 011570 188 AAYEKAQESNIRIKGVLITNP--SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK-ESSFVSIAEIIDQDIA 264 (483)
Q Consensus 188 ~~i~~~~~~~~~~~~i~l~~P--~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~-~~~~~s~~~l~~~~~~ 264 (483)
+.+.+. ....+++++. |||||.-.+.|++++|.++.++.+.+-+.|-+|.++.-+. +....++.-+.+
T Consensus 190 edl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~---- 260 (427)
T KOG1411|consen 190 EDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE---- 260 (427)
T ss_pred HHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH----
Confidence 877653 2234555554 9999999999999999999999999999999999853222 111123333433
Q ss_pred cCCCeEEEEecCccccCCCCceEEEE--EecChHHHHHHH----H-hhhc-CCCChHHHHHHHHhcCChhHHHHHHHH--
Q 011570 265 CNRNLIHIVYSLSKDMGFPGFRVGII--YSYNDQVVSCAR----K-MSSF-GLVSSQTQHLIATMLSDDQFVEKFIAE-- 334 (483)
Q Consensus 265 ~~~~~vi~~~S~SK~~g~~GlRiG~l--i~~~~~l~~~~~----~-~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~-- 334 (483)
+..++++..||.|.+|+-|=|+|.+ ++.+++....+. . .++. .+++.-...+++.+|.+.+...+|..+
T Consensus 261 -~g~~~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk 339 (427)
T KOG1411|consen 261 -DGHEILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVK 339 (427)
T ss_pred -cCCceEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHH
Confidence 4577888999999999999999944 555544443322 2 2222 223333556778888887665555544
Q ss_pred -HHHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 335 -SAKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 335 -~~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
+.+++...|+.|.+.|+..| |..+..+-|+|.+--+.. +-.+.|.+++.|++. .+
T Consensus 340 ~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p-----------eQv~~l~ke~~iYmT--------~d- 399 (427)
T KOG1411|consen 340 GMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP-----------EQVDWLTKEYHIYLT--------KD- 399 (427)
T ss_pred HHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH-----------HHHHHHHhhheeeec--------cC-
Confidence 56788888899999998764 444556678898765543 345677788888865 23
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 410 WFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
=|||++..+...+..+.++|.++.
T Consensus 400 -GRiS~aG~ss~nV~yLa~aih~vt 423 (427)
T KOG1411|consen 400 -GRISMAGLSSSNVPYLADAIHAVT 423 (427)
T ss_pred -ceEeeccccccCCcccchhhHhHh
Confidence 389998777677777777766543
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-16 Score=157.79 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~ 172 (483)
...|++.+|++.+ .+..+++++++.|+..++.+++++||+|+++...|......+.. ..|++++.++
T Consensus 71 ~~~Le~~lA~l~g----------~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 71 QDVVEQRIAALEG----------GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred HHHHHHHHHHHhC----------CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC
Confidence 4677888887765 24567777888899999999999999999999888776543322 1377777774
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+. .|++.+++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.... .
T Consensus 141 -d~-----~d~e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-~---- 200 (436)
T PRK07812 141 -DP-----DDLDAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-I---- 200 (436)
T ss_pred -CC-----CCHHHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-C----
Confidence 21 278889888753 7899999999999999999 78888899999999999999863211 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS 292 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~ 292 (483)
.++ . ....+++.|++|.+|-.|--+|.++.
T Consensus 201 ~pl-~---------~GaDivv~S~tK~lgg~G~~i~G~vv 230 (436)
T PRK07812 201 RPL-E---------HGADIVVHSATKYLGGHGTAIAGVIV 230 (436)
T ss_pred Cch-h---------cCCCEEEEecccccCCCCCeEEEEEE
Confidence 111 1 13446779999999877766776666
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=155.31 Aligned_cols=165 Identities=25% Similarity=0.318 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCC----eEEEeCCCCcChHHHHhhh--cCcE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGD----AFLVPTPYYPGFDRDLRWR--TGVQ 167 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd----~Vlv~~P~y~~~~~~~~~~--~G~~ 167 (483)
+..+.|+.+|++++ .++.+|++|+|+|+++++++..+. ..+| +|++..-.|+.....++.+ .|.+
T Consensus 86 ~~E~aR~~VAklIn--------Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~ 157 (428)
T KOG1549|consen 86 AVEAAREQVAKLIN--------ADPSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLE 157 (428)
T ss_pred HHHHHHHHHHHHhC--------CCCCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeE
Confidence 46789999999988 578889999999999999998863 3566 8999988888776655433 3899
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
++.+|++. +..+|++.+++.|+. +|++|.+...||-+|.+.| +++|.++|+++++.+++|.+++ .+
T Consensus 158 Vt~lpv~~--~~~~d~~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P---v~EI~~icr~~~v~v~~DaAQa---vG 223 (428)
T KOG1549|consen 158 VTYLPVED--SGLVDISKLREAIRS------KTRLVSIMHVNNEIGVLQP---VKEIVKICREEGVQVHVDAAQA---VG 223 (428)
T ss_pred EEEeccCc--cccccHHHHHHhcCC------CceEEEEEecccCcccccc---HHHHHHHhCcCCcEEEeehhhh---cC
Confidence 99999884 457899999999975 9999999999999999999 8889999999999999999997 33
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecC
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN 294 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~ 294 (483)
.-..++.++ +..++..|.+|.||.+| +|++++.+
T Consensus 224 --~i~vDV~el---------n~D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 224 --KIPVDVQEL---------NADFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred --CccccHHHc---------CchheeeecccccCCCc--ceEEEEcc
Confidence 333565555 34456679999999999 99999964
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-15 Score=147.51 Aligned_cols=303 Identities=18% Similarity=0.213 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
..+-+.+.+.+...++ .+. +-++++.+++.++...+..+++|||+|++...+..+ +.+.++.+ |.+++.+..
T Consensus 37 ~~~~~~~~~~L~~v~~----t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~-g~~v~~~~~ 111 (383)
T COG0075 37 VGIMKEVLEKLRKVFG----TENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERY-GAEVVVLEV 111 (383)
T ss_pred HHHHHHHHHHHHHHhc----CCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHh-CCceEEEeC
Confidence 4444444444544444 233 456677889999999999999999999999887533 34555654 999998887
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
++ +-.+|+++++++|++ ++++++|.+++.-.+||...+ +++|+++|++||.++|+|.+-+ +++ .+ .
T Consensus 112 ~w--g~~v~p~~v~~~L~~----~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS---~Gg-~~-~ 177 (383)
T COG0075 112 EW--GEAVDPEEVEEALDK----DPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSS---LGG-EP-L 177 (383)
T ss_pred CC--CCCCCHHHHHHHHhc----CCCccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEeccc---CCC-cc-c
Confidence 65 346899999999984 457889999999999999998 8889999999999999999976 555 33 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHH---------------Hhhh---c-CCCChH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCAR---------------KMSS---F-GLVSSQ 313 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~---------------~~~~---~-~~~s~~ 313 (483)
.+. ++...+++.+--|.++. || .|.+..+++.+..... .+.. + .+.+..
T Consensus 178 ~vd---------~wgiDv~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~ 246 (383)
T COG0075 178 KVD---------EWGIDVAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVN 246 (383)
T ss_pred chh---------hcCccEEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHH
Confidence 222 34566778899999874 55 6788775443332211 1111 1 222223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
...++..+|+.- .++-++.+.+++++..+.+++.++++|++.+... ..-...+.+|.+.+.. +....++
T Consensus 247 ~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P~g~~~~------~~~~~~~ 318 (383)
T COG0075 247 LIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVPEGVDDK------KVRRALL 318 (383)
T ss_pred HHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECCCCCCcH------HHHHHHH
Confidence 333444444321 1222566777888889999999999999877622 2224455666654422 3334788
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+++||.+.+|.. ......+||+... .+..++..++.+|..++.+...
T Consensus 319 ~~~g~~i~gg~~--~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 319 KEYGVEIAGGQG--PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred HhCCEEeccccc--ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 889999988753 3345689999955 6999999999999999988754
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.5e-17 Score=147.81 Aligned_cols=298 Identities=15% Similarity=0.118 Sum_probs=198.0
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcC
Q 011570 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 86 ~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
-+.+|.+. +..|...||+|.+ .|+.++-+.+-.+...++-+++.|.|.|+..+-.+.+..+.++.. .
T Consensus 106 fIcGtq~i--Hk~LE~kiAqfh~----------rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLc-k 172 (417)
T KOG1359|consen 106 FICGTQDI--HKLLESKIAQFHG----------REDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLC-K 172 (417)
T ss_pred EEecchHH--HHHHHHHHHHHhC----------CCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHH-h
Confidence 34566654 5889999999876 345555566667777888889999999999999998887776653 2
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
+ --.+|+-.++..+.+... .+-|+|+....-...|.+.| +++|..++++||.++++||+|+-.+
T Consensus 173 -r----------y~h~dv~~l~~~l~~a~k--~r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlfiDecHaTgf 236 (417)
T KOG1359|consen 173 -R----------YRHVDVFDLEHCLISACK--MRLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLFIDECHATGF 236 (417)
T ss_pred -h----------hccchhHHHHHHHHHhhh--heEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEEEeeccccee
Confidence 0 113567777766654322 25666655556788999999 8888888999999999999999887
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHh-hhcCCCCh--H-----HHH
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKM-SSFGLVSS--Q-----TQH 316 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~-~~~~~~s~--~-----~q~ 316 (483)
++. .. ....+... +..+..|+.++++|++| +.| ||..+ +..++..++.. ++|...++ + +..
T Consensus 237 ~G~-tG-rGt~E~~~----vm~~vdiinsTLgKAlGga~G---Gyttg-p~~li~llrqr~RpylFSnslppavV~~a~k 306 (417)
T KOG1359|consen 237 FGE-TG-RGTAEEFG----VMGDVDIINSTLGKALGGASG---GYTTG-PKPLISLLRQRSRPYLFSNSLPPAVVGMAAK 306 (417)
T ss_pred ecC-CC-CChHHHhC----CCCcceehhhhhhhhhcCCCC---CCccC-ChhHHHHHHhcCCceeecCCCChhhhhhhHH
Confidence 765 22 23333332 13466788899999987 555 99999 56666666543 34422222 1 112
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+...++.+. ......+.+.+++++.++..|+++..... ..+-+-+.+. .....++.+||+. ||.
T Consensus 307 a~dllm~s~--------~~i~~~~a~~qrfr~~me~aGftIsg~~h-PI~pv~lGda------~lA~~~ad~lLk~-Gi~ 370 (417)
T KOG1359|consen 307 AYDLLMVSS--------KEIQSRQANTQRFREFMEAAGFTISGASH-PICPVMLGDA------RLASKMADELLKR-GIY 370 (417)
T ss_pred HHHHHHhhH--------HHHHHHHHHHHHHHHHHHhcCceecCCCC-CccceecccH------HHHHHHHHHHHhc-Cce
Confidence 222222221 22234466677888888888988765332 2333333321 2244778889965 999
Q ss_pred eeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 397 VSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 397 v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|..-+..-.+ +.-.+|+.++. .++|+++++++++.++.+..+
T Consensus 371 Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~ 414 (417)
T KOG1359|consen 371 VIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN 414 (417)
T ss_pred EEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence 8765544333 33469999976 599999999999998877654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=155.12 Aligned_cols=295 Identities=12% Similarity=0.032 Sum_probs=170.9
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------------EEEEeecCCCC--Ccc-
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------------QLVPVVCDSSN--DFK- 180 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------------~~~~v~~~~~~--~~~- 180 (483)
.+.+++++++++++..++.... .....|+...-+|.+.........+. .+..+|.+... .+.
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGE 182 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccC
Confidence 4689999999999999887531 12356888888776644322111010 11222222100 000
Q ss_pred -------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 181 -------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 181 -------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
-+++.+++.+++.. .+.++.+|++.......|.+. +.+.++++.++|++||+++|+||+|.++...+ ..
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G-~~- 259 (433)
T PRK08117 183 DPEVCFLECLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG-EW- 259 (433)
T ss_pred chhHHHHHHHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccc-cc-
Confidence 14555666654311 123565555554455567764 78889999999999999999999999753433 22
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
.....+ +...-+.||||.+| +|+++|++++ ++.+.+.+..... ....+++++.++.+.|+... .
T Consensus 260 ~~~~~~---------gv~pDi~t~sK~lg-~G~pigav~~-~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~--~- 325 (433)
T PRK08117 260 FAAQTF---------GVVPDIMTIAKGIA-SGLPLSAVVA-SKELMEQWPLGSHGTTFGGNPVACAAALATLEVIK--E- 325 (433)
T ss_pred hhHhhc---------CCCCCEeehhhhcc-CCCcceeEEE-cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHH--h-
Confidence 111111 11111359999999 9999999999 4555554432111 12357778777777765311 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
....+.+++..+++.+.|++ +++....+..|+++++++..............+...++ ++||.+.+.. .
T Consensus 326 --~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g----~ 398 (433)
T PRK08117 326 --EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCG----N 398 (433)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecC----C
Confidence 11222233333444444433 33333344556788888753211111112234555555 5699887632 1
Q ss_pred CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 407 NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 ~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+++|+++.. ++++++++++++|.+++++.
T Consensus 399 ~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 399 AGNVLRMIPPLTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 24689999754 69999999999999998764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=152.71 Aligned_cols=309 Identities=15% Similarity=0.087 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCc-CCCcEEE-eCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc------
Q 011570 97 PEFRNAVAKFMGKVRGNRITF-DPDRIVM-SGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV------ 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~-~~~~i~i-t~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~------ 166 (483)
.+.+..+|+.+.+... .+. ..+.+++ ++++++++..++.... ....+|+....+|++.........|.
T Consensus 77 ~~~~~~lae~l~~~~~--~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~ 154 (412)
T TIGR02407 77 TEAKREFLETFNEIIL--KPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQG 154 (412)
T ss_pred cHHHHHHHHHHHHhcc--CccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccC
Confidence 4455566666554310 000 1125666 4899999998887642 22367999898887765433222121
Q ss_pred ------EEEEeecCCCCCc-ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 167 ------QLVPVVCDSSNDF-KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 167 ------~~~~v~~~~~~~~-~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
.++.+|.++.... .-+++.+++.+.+......++.+|++....++.|. +.+.+.+++|.++|++||+++|+|
T Consensus 155 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D 234 (412)
T TIGR02407 155 AGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVD 234 (412)
T ss_pred CCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 2233332210000 02366677777542111124666665544788898 578999999999999999999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecChHHHHHHHHh--hhcCCCChHHH
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVVSCARKM--SSFGLVSSQTQ 315 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~~~~~~~--~~~~~~s~~~q 315 (483)
|++.++...+ . +...... . . .+| +.++||.+| + |+|+|+++++++ + ..+... ...+..++++.
T Consensus 235 EV~tG~GRtG-~-~~a~~~~-~-v---~PD----i~~~~K~lg-~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~ 300 (412)
T TIGR02407 235 DIQAGCGRTG-T-FFSFEPA-G-I---EPD----IVCLSKSIS-GYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAF 300 (412)
T ss_pred chhhCCCccc-h-hHHhccc-C-C---CCC----EEEechhcc-CCccceeEEEEchh-h-hccCCCccCCCCCccHHHH
Confidence 9998642222 1 1111111 1 0 223 236899998 7 999999999543 4 322211 11122455533
Q ss_pred HH---HHH-hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 316 HL---IAT-MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 316 ~~---~~~-~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
.+ +.. ++.+++. .++.++..+.++++.+.+.+.+.. +.......|+++|++++... ....+...++
T Consensus 301 aaa~a~l~~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~--~~~~vrg~Gl~~~l~l~~~~------~~~~~~~~~~- 370 (412)
T TIGR02407 301 VTATAALEYYWSDDAF-EKAVQRKSEIIQERLDRIVAEYPE--LIKQVRGRGLMQGIECGDGD------LAGKIAKAAF- 370 (412)
T ss_pred HHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHHhhCCC--ceEeeecceeEEEEEecChH------HHHHHHHHHH-
Confidence 33 223 3444443 455556566666555544444321 33445567899999997521 1235666666
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
++||.+.+... ..+.+|++... .+++++++++++|+++++
T Consensus 371 ~~Gv~v~~~~~----~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 371 ENGLIIETSGP----NDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred HCCCEEeccCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46999987432 23579999976 599999999999999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-15 Score=138.99 Aligned_cols=333 Identities=16% Similarity=0.181 Sum_probs=213.8
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
.+||-...-..|.+..++++.+... .-.-|+...-...|.+.+|+..+ ....+++++|
T Consensus 23 ~vDLRSDTvT~PTdeMr~am~eA~v-------------gDdVyGeD~tt~rLE~~vA~l~G---------KEAgLFv~SG 80 (384)
T KOG1368|consen 23 SVDLRSDTVTVPTDEMRRAMAEASV-------------GDDVYGEDPTTNRLEQRVAELFG---------KEAGLFVPSG 80 (384)
T ss_pred ccccccccccCChHHHHHHHhhccc-------------CcccccCCccHHHHHHHHHHHhC---------ccceeeeccc
Confidence 3566666555666777777655211 11236555557899999999987 3456888888
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH--HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH--hcCCceeEE
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDRD--LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ--ESNIRIKGV 203 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~--~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~--~~~~~~~~i 203 (483)
+...+-.++..+-+||..||+.+-+|-...+. +..+.|+.+.++...+ +..+++++++++++... -+.+.+++|
T Consensus 81 TmgNllaIm~Hc~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~--dgtm~ledIe~~ir~~~GD~H~p~T~LI 158 (384)
T KOG1368|consen 81 TMGNLLAIMVHCHQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNEN--DGTMDLEDIEAAIRVPKGDCHMPPTKLI 158 (384)
T ss_pred ccccHHHHHHHhcCCCceEEeccchheeehhccChhhhccceeEeeeeCC--CCeeeHHHHHHhhcCCCCCccCCCceEE
Confidence 88777777777778999999998876433322 2223477777776544 45789999999998432 134678999
Q ss_pred EEeCCCCCCc-CCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC-CCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 204 LITNPSNPLG-TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK-ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 204 ~l~~P~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~-~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
.+.|-+|-+| .++|.|++.++.++|++||+.+.+|.+-. |+. -..-.++..+.. ..|.|-+ .+||.+|
T Consensus 159 clENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi---~NAavasgV~vk~i~~-----~fDSVsi--CLSKglg 228 (384)
T KOG1368|consen 159 CLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI---FNAAVASGVPVKKICS-----AFDSVSI--CLSKGLG 228 (384)
T ss_pred EeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh---hhHHHHcCCCHHHHHH-----hhhhhhh--hhhccCC
Confidence 9999987776 99999999999999999999999999975 332 012255655554 2344433 7899998
Q ss_pred CCCceEEEEEecChHHHHHHHHhh-hcCCC-ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMS-SFGLV-SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCL 358 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~-~~~~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~ 358 (483)
.| +|-++..+..+++..+.++ .++.. -.....++++++.-.+- .. ..+.-.++...+.+.++..+ +++.
T Consensus 229 AP---VGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~----~~-~L~~dHk~A~~lAe~~~~~~~i~v~ 300 (384)
T KOG1368|consen 229 AP---VGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN----VP-LLRADHKRAKELAEYINTPEEIRVE 300 (384)
T ss_pred CC---cccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc----hH-HHHHHHHHHHHHHHHhccccceeee
Confidence 55 7966665666655544433 33221 11111222222221111 12 12222445566677777664 7666
Q ss_pred cC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 359 KS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 359 ~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
.+ -..+++.+.+... .+ ....+++.+. ++||.+.+|..+ .+|+.+-+ .++++++..+..+.+.+
T Consensus 301 v~a~etNiv~~~l~q~----~~-~~~~l~~~~~-k~gi~lm~~~s~------r~Rivlh~Qvt~~~ve~~~~~~~k~~ 366 (384)
T KOG1368|consen 301 VPAVETNIVNMVLCQA----RL-TAEELCKFLE-KNGILLMGGASR------RIRIVLHHQVTDEDVEYVKSVLSKKF 366 (384)
T ss_pred cchhhcceeeeecccc----cC-CHHHHHHHHH-HCCeEEeecccc------ceEEEEEEecCHHHHHHHHHHHHHHH
Confidence 54 3345777666321 11 1236666665 679999987543 49999976 69999999999995433
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-17 Score=144.15 Aligned_cols=167 Identities=23% Similarity=0.269 Sum_probs=128.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH-HHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD-RDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~-~~~~~~~G~~~~~v~~~ 174 (483)
+.++++.++++++ .+++++++++|+++++..++.++.+++++|+++.|+|++.. ..+... |.++..++.+
T Consensus 2 ~~~~~~~l~~~~~--------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQ--------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELA-GAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhc-CCEEEEeccC
Confidence 3678899998875 35789999999999999999999988999999999998888 666664 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
..+....+.+.+++... +.+++++++++|+||+|...+ .++|.++|+++|+++|+|++|..+.... ..
T Consensus 73 ~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~-~~--- 140 (170)
T cd01494 73 DAGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVP---LKEIRKIAKEYGILLLVDAASAGGASPA-PG--- 140 (170)
T ss_pred CCCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcC---HHHHHHHHHHcCCEEEEecccccccccc-cc---
Confidence 54433333334443322 347899999999999999998 4778888889999999999998754332 11
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS 292 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~ 292 (483)
.... ....++++.|++|.+|. .++|++++
T Consensus 141 -~~~~------~~~~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 141 -VLIP------EGGADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred -cccc------cccCCEEEEEcccccCC--CceEEEEe
Confidence 1111 22456778899999974 77999986
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=150.11 Aligned_cols=311 Identities=13% Similarity=0.071 Sum_probs=178.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhhcCc-----
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWRTGV----- 166 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~~G~----- 166 (483)
..+.+..+|+.+.+..+ .. .+.+++++++++++..++.. ..+ .++|+...++|++.........+.
T Consensus 97 ~~~~~~~la~~l~~~~p----~~~~~~v~f~~sGseA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~~al~~~~~~~~~~ 171 (443)
T PRK06058 97 PYEGYVAVAEQLNRLTP----GDHEKRSALFNSGAEAVENAVKIARSYTG-RQAVVVFDHAYHGRTNLTMALTAKSMPYK 171 (443)
T ss_pred CCHHHHHHHHHHHHhCC----CCCCCEEEEeCCcHHHHHHHHHHHHHhhC-CCeEEEECCCcCcChHHHHhhcCCCcccc
Confidence 35666677777765432 11 25789999999999998874 333 378999999998876443322111
Q ss_pred --------EEEEeecCCC--C--CcccCH-HHHHHHHHHHHh--cCCceeEEEEeCCCCCCc-CC-CCHHHHHHHHHHHh
Q 011570 167 --------QLVPVVCDSS--N--DFKVTM-EALEAAYEKAQE--SNIRIKGVLITNPSNPLG-TF-LDRETLKDIVSFIN 229 (483)
Q Consensus 167 --------~~~~v~~~~~--~--~~~~d~-~~l~~~i~~~~~--~~~~~~~i~l~~P~NPtG-~~-~~~~~l~~i~~~a~ 229 (483)
.+..+|.... . ++..+. +.+++.++.... ...++.+|+ ..|-+..| .+ .+.+.+++|.++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~ 250 (443)
T PRK06058 172 SGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCR 250 (443)
T ss_pred cccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 1122221110 0 000111 222222221111 123565554 66765554 43 35888999999999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hc
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SF 307 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~ 307 (483)
+||+++|.||++.++...+ .. ... .... . .+| ++ +++|.+| .|+++|++++ ++++.+.+.... ..
T Consensus 251 ~~gillI~DEV~tGfgRtG-~~-fa~-~~~g-v---~PD-iv---~~gK~l~-~G~Pi~av~~-~~~i~~~~~~~~~~~T 317 (443)
T PRK06058 251 ENGVVFIADEVQTGFARTG-AW-FAC-EHEG-I---VPD-LI---TTAKGIA-GGLPLSAVTG-RAEIMDAPHPGGLGGT 317 (443)
T ss_pred HcCCEEEEeccccCCCcCh-hh-hHH-HhcC-C---CCC-EE---EEccccc-CCCccEEEEE-cHHHHhhccCCCCCCC
Confidence 9999999999998754333 22 221 1111 0 223 22 5689999 9999999999 556665543221 12
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----Ccee-ecCCceEEEeeecCchh-hccChHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGC-LKSNAGLFLWMDLHHLL-KEQTYEA 381 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~-~~~~~g~f~~~~l~~~~-~~~~~~~ 381 (483)
+..++++++++.+.|+.-. + ....+.++++.+++.+.|+++ ++.. ..+.| .++.+.+.... .......
T Consensus 318 ~~gnpl~~aaa~a~L~~~~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G-~~~~i~~~~~~~~~~~~~~ 391 (443)
T PRK06058 318 YGGNPVACAAALAAIETIE--E---DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRG-AMIAIELVKPGTTEPDAEL 391 (443)
T ss_pred CCCCHHHHHHHHHHHHHHH--H---cCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccc-eEEEEEEecCCCCCCcHHH
Confidence 3467888888777764311 1 122333444445555555442 3221 34444 45556653210 0011111
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
...+...++ ++||.+.++..|+ +++|+..+. ++++++++++++|.+++++
T Consensus 392 ~~~l~~~~~-~~Gv~~~~~~~~~----~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 392 TKALAAAAH-AAGVIVLTCGTYG----NVIRLLPPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred HHHHHHHHH-HCCeEEeccCCCC----CEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence 234555555 4699999875443 589998765 5999999999999998864
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=153.43 Aligned_cols=348 Identities=14% Similarity=0.098 Sum_probs=194.7
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE--
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM-- 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i-- 124 (483)
..|+|-.+||...+...+......... . .++ +.....|+...-+.++.+...+...+.++ ...+.+++
T Consensus 35 ~~l~liasen~~s~~v~~a~~s~~~~k--y-~~G---~~g~r~~~G~~~~d~lE~~~~~~~~~~f~----~~~~~~~~nv 104 (475)
T PLN03226 35 KGLELIASENFTSRAVMEALGSCLTNK--Y-SEG---LPGARYYGGNEYIDQIETLCQKRALEAFR----LDPEKWGVNV 104 (475)
T ss_pred cCeeEecCCccCCHHHHHHHhhHHhcc--c-cCC---CCCCcCcCCChhHHHHHHHHHHHHHHHhC----CCcceeEEec
Confidence 457888888887755444332221000 0 001 11112243333344554433333333333 34444444
Q ss_pred -eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH-HHhh----hcCcE----EEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 125 -SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR-DLRW----RTGVQ----LVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 125 -t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~-~~~~----~~G~~----~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
.++++.++..++.+|++|||+|+..+....++.. .... ..+.. ++++..+. .+..+|+++|++.+.+.
T Consensus 105 ~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~- 182 (475)
T PLN03226 105 QPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLF- 182 (475)
T ss_pred CcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhc-
Confidence 3566778888999999999999985532222211 1111 00121 22444443 34579999999998652
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++++|++ ..++ +|...+ +.+|.++|+++|+++++|+++....... ....+. + ....++++
T Consensus 183 ----~pklIv~-~~S~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~-~~~~~p--~--------~~~Div~~ 242 (475)
T PLN03226 183 ----RPKLIIA-GASA-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAA-QEAASP--F--------EYCDVVTT 242 (475)
T ss_pred ----CCeEEEE-ecCc-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccC-CCCCCC--C--------CCCeEEEe
Confidence 5676554 3444 677777 6678888999999999999997654443 211111 1 12347789
Q ss_pred cCccccCCCCceEEEEEecChH-------------HHHHHHHhhh--c-CCCChHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQ-------------VVSCARKMSS--F-GLVSSQTQHLIATMLSDDQFVEKFIAESAKR 338 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~-------------l~~~~~~~~~--~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (483)
|++|++ .|.+-|+++++++. +...+..... + +..+.....+++..+..- ...-.++.+++
T Consensus 243 t~hK~L--~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i--~~~~~~~~~~~ 318 (475)
T PLN03226 243 TTHKSL--RGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA--MTPEFKAYQKQ 318 (475)
T ss_pred cCcccc--cCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH--hCcCHHHHHHH
Confidence 999998 33344888885432 1112221111 1 212222222223323211 01112445677
Q ss_pred HHHHHHHHHHhhhcCCceeecCC-ceEEEeeecC-chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC---CCCCEEEE
Q 011570 339 IAERHKAFTWGLSQVGIGCLKSN-AGLFLWMDLH-HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC---PNPGWFRV 413 (483)
Q Consensus 339 l~~~~~~l~~~L~~~gi~~~~~~-~g~f~~~~l~-~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~---~~~~~iRi 413 (483)
+.++.++|.+.|.+.|+++..+. .+..+++++. ..++. .-....|++.||.+..+..++. -.+..+|+
T Consensus 319 ~~~na~~L~~~L~~~G~~l~~~~t~~hi~lv~~~~~gi~~-------~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRi 391 (475)
T PLN03226 319 VKANAAALANRLMSKGYKLVTGGTDNHLVLWDLRPLGLTG-------SRVEKVLDLAHITLNKNAVPGDSSALVPGGVRI 391 (475)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCCCCCEEEEEccCCCCCH-------HHHHHHHHHCCCEECCCCCCCCcccCCCCCccc
Confidence 88888999999998999887632 2346677773 22222 2244556678999987653322 12345888
Q ss_pred Ee-----ccCCHHHHHHHHHHHHHHHHHh
Q 011570 414 CF-----ANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 414 s~-----~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+. ...++++++++.+.|.++++..
T Consensus 392 Gt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 392 GTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 43 2257899999999999998854
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=149.22 Aligned_cols=295 Identities=15% Similarity=0.107 Sum_probs=170.3
Q ss_pred cEEE-eCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC------------cEEEEeecCCCCCc-ccCHH
Q 011570 121 RIVM-SGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG------------VQLVPVVCDSSNDF-KVTME 184 (483)
Q Consensus 121 ~i~i-t~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G------------~~~~~v~~~~~~~~-~~d~~ 184 (483)
.+++ ++++++++..++.... ....+|+....+|++.........| ..+..+|.+..... .-|++
T Consensus 104 ~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 183 (425)
T PRK09264 104 KVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLA 183 (425)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHH
Confidence 5666 5899999998886642 2236788888888775432221111 02333333210000 02677
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 185 ALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 185 ~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
.+++.+.+......++.+|++.......|. +.+.+.+++|.++|++||+++|+||++.++...+ . +.......-
T Consensus 184 ~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG-~-~~~~~~~~v--- 258 (425)
T PRK09264 184 YLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTG-T-FFSFERAGI--- 258 (425)
T ss_pred HHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCcccc-H-HHHHhhcCC---
Confidence 888877643211124556655544555676 5688999999999999999999999998743322 1 112111110
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-h-hhcCCCChHHHHHHHHhc----CChhHHHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-M-SSFGLVSSQTQHLIATML----SDDQFVEKFIAESAK 337 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~-~~~~~~s~~~q~~~~~~l----~~~~~~~~~~~~~~~ 337 (483)
.++ +-++||.+|..|+++|+++++ +.+. .+.. . ...+..++++..++.+.+ .+++ +.++++++.+
T Consensus 259 --~PD----i~t~~K~l~~~G~pigav~~~-~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~-l~~~~~~~g~ 329 (425)
T PRK09264 259 --TPD----IVTLSKSISGYGLPMALVLIK-PELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDA-FEKEVKAKGE 329 (425)
T ss_pred --CCC----EEEeccccCCCccceEEEEEc-hhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 223 237799999449999999995 4443 2211 1 111224555554443444 2222 2233333333
Q ss_pred HHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec
Q 011570 338 RIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA 416 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~ 416 (483)
.++++.+.+.+ +.+ +.......|+++|+.++.. .....+...++ ++||.+.++..+ ...||++..
T Consensus 330 ~l~~~l~~l~~---~~~~~~~~vrg~Gl~~~i~l~~~------~~~~~l~~~~~-~~Gv~~~~~~~~----~~~lr~~p~ 395 (425)
T PRK09264 330 LVRERLEEIAA---KYPGLGAEVRGRGMMQGIDFGDG------ELAGKIAAEAF-ENGLIIETSGPE----DEVVKLLPP 395 (425)
T ss_pred HHHHHHHHHHH---hCCCceecceecccEEEEEecCh------HHHHHHHHHHH-HCCCEEeccCCC----CCEEEEeCC
Confidence 33333222222 222 2122344578889998642 11235666666 459999875432 357899876
Q ss_pred c-CCHHHHHHHHHHHHHHHHHhhhccCc
Q 011570 417 N-MDDRTMEIALSRITSFMLKNVEAKVP 443 (483)
Q Consensus 417 ~-~~~e~l~~~l~~L~~~l~~~~~~~~~ 443 (483)
. .+++++++++++|.+++++..+++.+
T Consensus 396 l~~t~~ei~~~~~~l~~~l~~~~~~~~~ 423 (425)
T PRK09264 396 LTIDEEELEEGLDILEEAVAEVLAEEES 423 (425)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5 59999999999999999886554433
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-15 Score=146.71 Aligned_cols=207 Identities=14% Similarity=0.116 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v~ 172 (483)
..|.+.||++-+ .+..+++++++.|+..++.+++++||+|+++...|.+....+ +. .|+++..++
T Consensus 65 ~~le~~la~LEg----------~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~-~Gi~v~~vd 133 (395)
T PRK08114 65 FSLQEAMCELEG----------GAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK-LGVTTTWFD 133 (395)
T ss_pred HHHHHHHHHHhC----------CCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh-cCcEEEEEC
Confidence 456666666432 567888888999999999999999999999999997776655 33 499988876
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCC
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~ 250 (483)
. .|.+.+++++++ ++|+|++.+|+||||.+.+ +++|+++|+++ |+++|+|.+++...+
T Consensus 134 ~-------~d~~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~---- 193 (395)
T PRK08114 134 P-------LIGADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL---- 193 (395)
T ss_pred C-------CCHHHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc----
Confidence 3 367888888863 7899999999999999999 88888999897 499999999864221
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-hhcC-CCChHHHHHHHHhcCChhH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-SSFG-LVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~~~ 327 (483)
.... ..+..+++.|.+|.++-+| +-.|.++. ++.+.+.+... ...+ ..++.....+..-++.
T Consensus 194 --~~pl---------~~GaDivv~S~tKyl~Ghsdv~~G~v~~-~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~T--- 258 (395)
T PRK08114 194 --FKAL---------DFGIDISIQAGTKYLVGHSDAMIGTAVA-NARCWEQLRENSYLMGQMVDADTAYMTSRGLRT--- 258 (395)
T ss_pred --cCHH---------HcCCcEEEEcCcccccCCCcceeEEEEc-CHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCc---
Confidence 1112 2255688999999875454 67787766 44443333322 2223 2444444433343433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+.-+.++..++...+.+.|+++
T Consensus 259 ----L~lR~~~~~~na~~va~~L~~h 280 (395)
T PRK08114 259 ----LGVRLRQHEESSLKVAEWLAEH 280 (395)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcC
Confidence 3344555677778888888876
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=153.14 Aligned_cols=172 Identities=17% Similarity=0.271 Sum_probs=129.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---------cCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---------ADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---------~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
..+|++++|++++ .+++++++|+++++..++.++ ++|||+|+++.|+|..+...+... |+
T Consensus 65 ~~~fe~~lA~~~g----------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~-G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLG----------VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQN-GL 133 (438)
T ss_pred HHHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHc-CC
Confidence 4789999999986 247999999999999988876 488999999999999998888875 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV- 245 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~- 245 (483)
+++.++++. .+|.+|++.+++++.+ ++++|+++++ +|... ++++|.++|+++|++||+|++++...
T Consensus 134 ~pv~vdvd~-~~~~id~~~le~~i~~------~tkaVi~~~~---~G~p~---dl~~I~~la~~~gi~vIeDaa~a~G~~ 200 (438)
T PRK15407 134 VPVFVDVEL-PTYNIDASLLEAAVSP------KTKAIMIAHT---LGNPF---DLAAVKAFCDKHNLWLIEDNCDALGST 200 (438)
T ss_pred EEEEEecCC-CcCCcCHHHHHHHcCc------CCeEEEEeCC---CCChh---hHHHHHHHHHHCCCEEEEECccchhhh
Confidence 999998864 3688999999998853 7899998875 45444 48889999999999999999997432
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhc
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSF 307 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~ 307 (483)
+.+ ....+ + . .+.+.|| +|.+. .|= -|+++++++.+.+.++.+..+
T Consensus 201 ~~g-~~~G~---~---------g-d~~~fSf~~~k~~~-~ge-GG~l~t~d~~l~~~~~~~~~~ 248 (438)
T PRK15407 201 YDG-RMTGT---F---------G-DIATLSFYPAHHIT-MGE-GGAVFTNDPLLKKIIESFRDW 248 (438)
T ss_pred cCC-eeeec---c---------C-ceEEEeCCCCCCcc-ccC-ceEEEECCHHHHHHHHHHHHh
Confidence 222 11111 1 1 2345566 46564 332 499999888888776655443
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.6e-15 Score=147.68 Aligned_cols=296 Identities=9% Similarity=0.082 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcE--EEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRI--VMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i--~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
..++.+.+.+++.+.+| .+++++ ++|+|+|+++...+.+. ..++++|++++-.|++....++.+ |.+...+
T Consensus 63 ~~~~e~~~~~~~a~l~g----~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~l-g~~~~~V 137 (380)
T PRK02769 63 SFDFERDVMNFFAELFK----IPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLL-RIKSRVI 137 (380)
T ss_pred hHHHHHHHHHHHHHHhC----CCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHc-CCCCcee
Confidence 35666666666666665 444554 88999999987665443 257889999999999998888876 8888888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC---cEEEEccccccCccCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN---IHLVCDEIYAATVFTK 248 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~---~~iI~Deay~~~~~~~ 248 (483)
+.++ ++.+|+++|++++.+. +.++.+|+++.++|+||.+-+ +++|.++|+++| +++++|.+++.....-
T Consensus 138 ~~~~--~g~id~~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~ 209 (380)
T PRK02769 138 TSLP--NGEIDYDDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPF 209 (380)
T ss_pred ccCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecc
Confidence 8764 4579999999999763 345889999999999999999 777788888998 7999999998743221
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc---------CCCChHH---HH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF---------GLVSSQT---QH 316 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~---------~~~s~~~---q~ 316 (483)
... ....+. ......+..|.+|.++ ....+|.++..++.+. .+.....+ ++-+... ..
T Consensus 210 ~~~-~~~~d~-------~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~-~~~~~~~yl~~~d~t~~GSR~g~~~l~lw 279 (380)
T PRK02769 210 VNN-PPPFSF-------ADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVE-RISVDVDYIGSRDQTISGSRNGHTALLLW 279 (380)
T ss_pred cCc-cccCCc-------cCCCCEEEECCcccCC-CCCCcEEEEEehhhhh-hcccCccccCCCCCCccCCCCcHHHHHHH
Confidence 000 000111 1123445679999876 4566899988654332 22111111 1112222 22
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
++...+...+ .++..++..+..+++.+.|++.|++.......+.+.++.+. + ++ .+ |..
T Consensus 280 ~aL~~lg~~G-----~~~~~~~~~~la~~l~~~L~~~g~~~~~~p~~~~v~f~~~~---------~-~~----~~--~w~ 338 (380)
T PRK02769 280 AAIRSLGSKG-----LRQRVQHCLDMAQYAVDRLQANGIPAWRNPNSITVVFPCPS---------E-RI----WK--KWH 338 (380)
T ss_pred HHHHHHCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCEEEcCCCceEEEEcCCC---------H-HH----Hh--Cee
Confidence 2333333333 35556677788888999998888876654444566555442 0 11 22 444
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhccC
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAKV 442 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~~ 442 (483)
+.+- .+++|+++.. .+.+.++++++.|...+...++.+.
T Consensus 339 l~~~-------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~~~~~~~ 378 (380)
T PRK02769 339 LATS-------GNQAHIITMPHHNKQQIDSLIDELIFDLKNPNKIDF 378 (380)
T ss_pred Eccc-------CCEEEEEECCCCCHHHHHHHHHHHHHHHhccccccc
Confidence 4322 2479999965 5888999999999988886665543
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.8e-15 Score=144.02 Aligned_cols=297 Identities=17% Similarity=0.176 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cC-CC-CeEEEeCCCCcChHHHHhhhcCcEE--E
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---AD-PG-DAFLVPTPYYPGFDRDLRWRTGVQL--V 169 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~-~g-d~Vlv~~P~y~~~~~~~~~~~G~~~--~ 169 (483)
.+.+.++|+.+.+.. + ..+.|+++|+++||+..++... .. ++ .+|+....+|++-.-..-.. +.+. .
T Consensus 83 ~~~~~~la~~L~~~s----~-~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~-t~~~ky~ 156 (404)
T COG4992 83 NEPQAELAEKLVELS----P-FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSA-TGQPKYR 156 (404)
T ss_pred ChHHHHHHHHHHhhC----c-cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeec-cCChhhc
Confidence 556777777776531 1 3789999999999999998664 22 22 36787777775422111111 1111 0
Q ss_pred --EeecCCC---CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 170 --PVVCDSS---NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 170 --~v~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.-|+.+. -.|+ |+++++++|.+ ++.+|++...+--.|.+. +.+.++++.++|++||+++|.||+..+
T Consensus 157 ~~F~Pl~~g~~~vpfn-Di~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG 229 (404)
T COG4992 157 KGFGPLLPGFRHVPFN-DIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTG 229 (404)
T ss_pred cCCCCCCCCceecCCC-CHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccC
Confidence 0011110 0122 89999999975 788888876688888866 556699999999999999999999988
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH---hhhcCCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK---MSSFGLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~---~~~~~~~s~~~q~~~~~ 320 (483)
+-.++ .+.....+.- .+| |+ ++.|.+| .|+.+|.+++. +.+...+.. -+.|+ .|+++.+++.+
T Consensus 230 ~GRTG--k~fA~e~~gV-----~PD--I~--tlaK~Lg-GG~PigA~la~-~~~~~~~~~G~HgSTfG-GNpLacAv~~a 295 (404)
T COG4992 230 LGRTG--KLFAYEHYGV-----EPD--IL--TLAKALG-GGFPIGAMLAT-EEIASAFTPGDHGSTFG-GNPLACAVALA 295 (404)
T ss_pred CCccc--hHHHHHHhCC-----CCC--EE--Eeecccc-CCccceeeEEc-hhhhhcCCCCcccCCCC-cCHHHHHHHHH
Confidence 54333 3333332211 222 32 7789999 99999999995 544444322 12233 67777776655
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
.++--. -+...+..++.-++|.+.|+++ ++-.....-|+++-+++..... ..++...+. +.||+
T Consensus 296 ~l~~l~-----~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~------a~~~~~~~~-~~gvL 363 (404)
T COG4992 296 VLEVLL-----EEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYR------ARDIVRALR-EEGVL 363 (404)
T ss_pred HHHHHc-----chhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCccc------HHHHHHHHH-HCCeE
Confidence 553211 0122233344555666666654 2111223446888888875321 225666666 55999
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+.+. +++.+|+.... ++++++++++++|++++++..
T Consensus 364 ~~~a------~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 364 VLPA------GPNVIRFLPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred EecC------CCCeEEecCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 8754 34589999987 599999999999999998764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-15 Score=165.24 Aligned_cols=310 Identities=14% Similarity=0.082 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC--cEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHH---hhhcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD--RIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDL---RWRTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~--~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~---~~~~G~~~~ 169 (483)
+.+.|+.+|++++ ++++ +|++|+|+|+++++++..+ +++||+|++..-.|+...... +. .|+++.
T Consensus 80 ~e~aR~~ia~~lg--------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~-~G~~v~ 150 (805)
T PLN02724 80 IESARQQVLEYFN--------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALE-KGAAAI 150 (805)
T ss_pred HHHHHHHHHHHhC--------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHH-cCCeEE
Confidence 5688888998887 3444 5899999999999999887 688999999877776655332 23 388998
Q ss_pred EeecCCCC------CcccCH--HHHHHHHHH----HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc-----C
Q 011570 170 PVVCDSSN------DFKVTM--EALEAAYEK----AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK-----N 232 (483)
Q Consensus 170 ~v~~~~~~------~~~~d~--~~l~~~i~~----~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~-----~ 232 (483)
.++++.+. ...+++ +.|++.++. ....+.++++|.++.-+|-||.+.|.+.+..+.+.++.+ +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 88876211 112332 556655321 011123568999999999999999976554444433322 3
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhh-----
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSS----- 306 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~----- 306 (483)
+++++|.+... + ....++..+ +..+++.|+.|.+| -.| +|++++.++ +.+.+.....
T Consensus 231 ~~v~vDaaQ~~---g--~~piDv~~~---------~~Dfl~~S~HK~~GgP~G--~G~L~vr~~-~~~~l~p~~~GGg~~ 293 (805)
T PLN02724 231 WMVLLDAAKGC---G--TSPPDLSRY---------PADFVVVSFYKIFGYPTG--LGALLVRRD-AAKLLKKKYFGGGTV 293 (805)
T ss_pred eEEEeehhhhc---C--CCCCChhhc---------CCCEEEEecceeccCCCC--ceEEEEehh-hhhhhcCCccCCCce
Confidence 68999999852 2 222344333 45577889999987 334 899998544 3322221100
Q ss_pred ---------------------cCCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcC-------Ccee
Q 011570 307 ---------------------FGLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQV-------GIGC 357 (483)
Q Consensus 307 ---------------------~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-------gi~~ 357 (483)
.++.+.+...++.+++. ++.+ -.+...++..+..+++.+.|.++ ++.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~---~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~i 370 (805)
T PLN02724 294 AASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK---LLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVL 370 (805)
T ss_pred EEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH---HHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEE
Confidence 02223233333333332 2222 13445566677778888888766 3666
Q ss_pred ecCC--------ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----------------------
Q 011570 358 LKSN--------AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP----------------------- 406 (483)
Q Consensus 358 ~~~~--------~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~----------------------- 406 (483)
+.+. -+..+.+.+... ++..+. . .....|+.++||.++.|..|.+.
T Consensus 371 yg~~~~~~~~~~r~~ivsFnv~~~-~~~~v~-~-~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c 447 (805)
T PLN02724 371 YGNHTFKLEFHIQGPIVTFNLKRA-DGSWVG-H-REVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVC 447 (805)
T ss_pred cCCCCCCCCcccccCEEEEEEEcC-CCCEeC-H-HHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCcc
Confidence 6432 123444455431 111111 1 23456677889999999877531
Q ss_pred ----------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 407 ----------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 ----------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..|++|+|++. .+.++++.+++.|++.+...
T Consensus 448 ~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~ 489 (805)
T PLN02724 448 WDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVST 489 (805)
T ss_pred CchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcC
Confidence 12789999988 59999999999999966444
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=149.43 Aligned_cols=328 Identities=13% Similarity=0.087 Sum_probs=207.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcC---CCcEEEeCChhHHHHHHHHHhcC-----------CCCeEEEeCCCCcC
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFD---PDRIVMSGGATGAHETVAFCLAD-----------PGDAFLVPTPYYPG 155 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~---~~~i~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~P~y~~ 155 (483)
|...++..++.+.+.+|+.+.+|.+-... ...-++|+|+++++..++.+..+ +.-.|++.+-+|.+
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~S 193 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSA 193 (490)
T ss_pred cccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHH
Confidence 33344678999999999999987210000 12467889999988776644321 11256677888988
Q ss_pred hHHHHhhhcCcE---EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 156 FDRDLRWRTGVQ---LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 156 ~~~~~~~~~G~~---~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
+..++..+ |.. ++.||.+..+++.+|++.|+++|++..++|..+-+|+.+-...+||.+-| +++|+++|+++|
T Consensus 194 v~Kaa~~l-Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~~~ 269 (490)
T PLN02880 194 LQKACQIA-GIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKSNG 269 (490)
T ss_pred HHHHHHHc-CCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHHcC
Confidence 98888886 874 78888876667899999999999887666666666677777889999999 888899999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHHHhhhcCC--
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCARKMSSFGL-- 309 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~~~~~~~~-- 309 (483)
+|+++|.+|+...... +. ......++ ....-+..+++|.++ ...-+|.++..+.. +...+.....+..
T Consensus 270 iwlHVDaA~gg~~~~~-~~---~~~~l~gi----e~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~ 340 (490)
T PLN02880 270 MWFHVDAAYAGSACIC-PE---YRHYIDGV----EEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQSLSTNPEFLKNK 340 (490)
T ss_pred CEEEEehhhHHHHHhC-HH---HHHHhcCc----hhcCEEEECchhhcC-CCccEEEEEEeCHHHHHHHHccCHHHhcCc
Confidence 9999999998754332 21 11121110 122345679999985 77889988885432 2222211111100
Q ss_pred -------CC-------------hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEee
Q 011570 310 -------VS-------------SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWM 368 (483)
Q Consensus 310 -------~s-------------~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~ 368 (483)
.+ .+...+....+... -+.+..+...+..+++.+.+++. ++++..+.....+.+
T Consensus 341 ~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~-----g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~F 415 (490)
T PLN02880 341 ASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE-----NLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCF 415 (490)
T ss_pred cccccCCCChhccCcCCCCcccHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEE
Confidence 00 01111112222222 23344444446777788888776 788775544345666
Q ss_pred ecCch-hhccCh-HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhh
Q 011570 369 DLHHL-LKEQTY-EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 369 ~l~~~-~~~~~~-~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+++.. ...... .-...+.++|.++..+.+.+... .+..++|+++.. +++++++.+++.|.+..++..
T Consensus 416 r~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~---~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 416 RLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVL---SGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred EEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEE---CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76531 111000 11124666666666666654332 245689999976 367999999999998877654
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-14 Score=146.47 Aligned_cols=331 Identities=13% Similarity=0.096 Sum_probs=210.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCc---CCCcEEEeCChhHHHHHHHHHhcC-----------CCCeEEEeCCCCc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITF---DPDRIVMSGGATGAHETVAFCLAD-----------PGDAFLVPTPYYP 154 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~---~~~~i~it~G~~~al~~~~~~l~~-----------~gd~Vlv~~P~y~ 154 (483)
.|...++..++.+.+.+|+.+.+|.+-.. ....-++|+|+++++..++.+..+ +.-.|++.+-+|.
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~ 240 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHS 240 (539)
T ss_pred CcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchH
Confidence 34445567899999999999998821100 013467789999888776655321 1225667788888
Q ss_pred ChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc
Q 011570 155 GFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK 231 (483)
Q Consensus 155 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~ 231 (483)
++..++..+ |. +++.||++..+++.+|++.|+++|++..+.+..+-+|+.+-..-+||.+=+ +.+|.++|++|
T Consensus 241 Sv~KAa~il-Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp---l~~Ia~i~~~~ 316 (539)
T PLN02590 241 SFRKACLIG-GIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP---LVPLGNIAKKY 316 (539)
T ss_pred HHHHHHHHc-CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh
Confidence 888888876 87 588899886667899999999999887666666666677777889999977 88889999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh-HHHHHHHHhhhc---
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND-QVVSCARKMSSF--- 307 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~-~l~~~~~~~~~~--- 307 (483)
|+|+.+|.+|++..... +. ...+...+ ..-.-+...++|.+. ...-+|.++..+. .+.+.+.....+
T Consensus 317 g~WlHVDaA~GG~al~~-~~---~r~~~~Gi----e~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~~~~~~YL~~ 387 (539)
T PLN02590 317 GIWLHVDAAYAGNACIC-PE---YRKFIDGI----ENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDALKTNPEYLEF 387 (539)
T ss_pred CCeEEEecchhhhhhcC-hh---hHHHhcCC----ccCCEEEECchhhcC-cCcCEEEEEecCHHHHHHHhhcCHHHhCC
Confidence 99999999998864333 22 22222211 111223458999885 7788998888554 233322110000
Q ss_pred ---------------CCCCh----HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEe
Q 011570 308 ---------------GLVSS----QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLW 367 (483)
Q Consensus 308 ---------------~~~s~----~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~ 367 (483)
...+. +...++...+... -+++..++..+..+++.+.+++. ++++..+..-..+.
T Consensus 388 ~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~-----G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVc 462 (539)
T PLN02590 388 KVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE-----NLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVC 462 (539)
T ss_pred cccccccCCCccccCCCCCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEE
Confidence 00111 1111222222222 24555556667778888888776 78876554434555
Q ss_pred eecCch-hhccC-hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 368 MDLHHL-LKEQT-YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 368 ~~l~~~-~~~~~-~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+++... ..... -.....+.+++.+...+.+.+.. . .+..++|+++++ +++++++.+++.|.+...+..+.
T Consensus 463 Fr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~-~--~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~~~ 536 (539)
T PLN02590 463 FRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTA-L--SGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFTRN 536 (539)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeE-E--CCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 665421 11110 01123566666655445555433 2 234589999976 48899999999999887666543
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-14 Score=144.82 Aligned_cols=309 Identities=14% Similarity=0.089 Sum_probs=194.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCC----CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH-----
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDP----DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----- 160 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~----~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----- 160 (483)
|+......++.....+...+.++ .+. .||-.. +++.|+..++.+|++|||+|+..+..|+++....
T Consensus 186 y~G~~~iD~iE~la~era~~lF~----~~~~~~gaNVQp~-SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~ 260 (586)
T PLN02271 186 YTGNQYIDQIERLCCERALAAFG----LDSEKWGVNVQPY-SCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPG 260 (586)
T ss_pred CCCChhHHHHHHHHHHHHHHHhC----Ccccccccceeec-cHHHHHHHHHHHhcCCCCEEEEecCCCCCchhccccccc
Confidence 33333345565555566666665 344 466666 5566778888999999999999988877665432
Q ss_pred ----hhhcCcE--EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 161 ----RWRTGVQ--LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 161 ----~~~~G~~--~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
.. .|.. ++++++++ .+..+|.+++++.+.. .++|+|++..-.|| ..++ ++++.++|+++|++
T Consensus 261 g~~vs~-sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~-----~rPKLII~g~Sayp--r~~D---~~~i~eIAdevGA~ 328 (586)
T PLN02271 261 GKKVSG-ASIFFESLPYKVNP-QTGYIDYDKLEEKALD-----FRPKILICGGSSYP--REWD---YARFRQIADKCGAV 328 (586)
T ss_pred cccccc-ccceEEEEEccccc-ccCccCHHHHHHHhhh-----cCCeEEEECchhcc--CcCC---HHHHHHHHHHcCCE
Confidence 11 2544 44444543 2457999999985544 38998888776787 5566 67778888899999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh-------------------
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND------------------- 295 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~------------------- 295 (483)
+++|.++....... ..+.+.. ....++.+|.+|++ .|-|-|.++..++
T Consensus 329 LmvD~AH~aGLIa~-g~~~sP~----------~~aDvvt~TTHKtL--rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~ 395 (586)
T PLN02271 329 LMCDMAHISGLVAA-KECVNPF----------DYCDIVTSTTHKSL--RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHY 395 (586)
T ss_pred EEEECccccccccc-CcCCCCC----------cCCcEEEeCCcccC--CCCCceEEEecccccccccCCccccccccccH
Confidence 99999997554443 2222211 12447889999987 6777798887432
Q ss_pred HHHHHHHHhhhcCC-CCh--HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC-ceEEEeeecC
Q 011570 296 QVVSCARKMSSFGL-VSS--QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN-AGLFLWMDLH 371 (483)
Q Consensus 296 ~l~~~~~~~~~~~~-~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~-~g~f~~~~l~ 371 (483)
++.+.+.....++. .++ ...++++..+..-.. .++ +...+++.++.+.|.+.|.+.|+++.... .+-.+++++.
T Consensus 396 d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~-~ef-k~Ya~QVv~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~ 473 (586)
T PLN02271 396 DFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT-PEY-KAYMQQVKKNAQALASALLRRKCRLVTGGTDNHLLLWDLT 473 (586)
T ss_pred HHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC-hHH-HHHHHHHHHHHHHHHHHHHHCCCeEeeCCCCcceeeecCc
Confidence 23333333222221 121 122333333332110 122 45566778899999999999999876422 2446788885
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC---CCCEEEEEecc-----CCHHHHHHHHHHHHHHHHH
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP---NPGWFRVCFAN-----MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~---~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~ 436 (483)
...- ....++++|++.||.+..-..++.. .++.+||+... ..++++++..+-|.++++-
T Consensus 474 ~~g~------~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~~ 540 (586)
T PLN02271 474 TLGL------TGKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI 540 (586)
T ss_pred ccCC------CHHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 4210 1245777888999988554433321 24569998743 3568888888888888773
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.70 E-value=9e-15 Score=159.91 Aligned_cols=319 Identities=14% Similarity=0.113 Sum_probs=206.9
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChh----HHHHHHHHHhcCC-CC----eEEEeCCC
Q 011570 85 KGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT----GAHETVAFCLADP-GD----AFLVPTPY 152 (483)
Q Consensus 85 ~~~~~Y~~~---~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~----~al~~~~~~l~~~-gd----~Vlv~~P~ 152 (483)
..++.|.|. +|+.++.+.+.+++.+..| .++|.++.+++ +++.+++.++.++ || +|+++...
T Consensus 552 ~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g------~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~a 625 (993)
T PLN02414 552 ANIHPFAPVDQAQGYQEMFEDLGDLLCEITG------FDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSA 625 (993)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCc
Confidence 344555443 3555554444455544443 38999999999 8999999999866 88 89999999
Q ss_pred CcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 153 y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
|+.....+... |++++.++.++++ .+|+++|++++.+. ..++++|++++|||-+|...+ +++|+++|+++|
T Consensus 626 H~sn~a~a~~~-G~~vv~v~~d~~G--~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~G 696 (993)
T PLN02414 626 HGTNPASAAMC-GMKIVVVGTDAKG--NINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNG 696 (993)
T ss_pred CccCHHHHHHC-CCEEEEeccCCCC--CcCHHHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcC
Confidence 99888888775 9999999987543 79999999999741 126899999999999999877 888999999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHHHHh----
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCARKM---- 304 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~~~~---- 304 (483)
+++++|.+...-...- .... ..+..+++.|.+|+|+ ..|--+|++.+. +.+...+...
T Consensus 697 alv~vDgAq~~a~~~l----~~p~---------~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~-~~L~p~lPg~~v~~ 762 (993)
T PLN02414 697 GQVYMDGANMNAQVGL----TSPG---------FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVP 762 (993)
T ss_pred CEEEEEecCHHhccCc----CCcc---------ccCCCEEEecCCccCCcCcccCCCCeeeEEEc-hhhcccCCCCcccc
Confidence 9999999984321111 1111 2355677889999765 334558998874 3333222100
Q ss_pred --------h--hcCCCCh--HHHH----HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEE--
Q 011570 305 --------S--SFGLVSS--QTQH----LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLF-- 365 (483)
Q Consensus 305 --------~--~~~~~s~--~~q~----~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f-- 365 (483)
. ..+.++. ..|. ++..++...+ .+-+++..++...+.+++.+.|.+. ++.+..+.+.+|
T Consensus 763 ~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG--~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hE 840 (993)
T PLN02414 763 TGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG--SEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHE 840 (993)
T ss_pred CCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC--HhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeee
Confidence 0 0122221 1111 1122222211 2235555666777888999988763 444443333211
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+.++++...+... ....+++++|+ ++||..-- ..| +..+++|++... .+.+++++++++|..+..+..+
T Consensus 841 fv~~~~~l~~~~g-~~~~di~krL~-d~Gihapt-~~~--pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 841 FIIDLRPFKNTAG-IEPEDVAKRLM-DYGFHAPT-MSW--PVPGTLMIEPTESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred EEEeccccccccC-CCHHHHHHHHH-HcCcEEee-ecc--ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 1134442111111 11347899998 67987433 224 247789999976 5999999999999988877654
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.9e-14 Score=137.17 Aligned_cols=218 Identities=22% Similarity=0.240 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~ 172 (483)
...|.++++.+-+ .++.+.++++..||..++.+|+++||+|+++...|++....+... .|+++..++
T Consensus 65 ~~~lE~~~a~LEg----------~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d 134 (396)
T COG0626 65 RDALEEALAELEG----------GEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVD 134 (396)
T ss_pred HHHHHHHHHHhhC----------CCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEEC
Confidence 4567777776642 578899999999999999999999999999999998876654432 488887766
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.. +.+.+++++.+ +++|+|++.+|+|||-.+.+ +.+|+++|+++|+++|+|+.|+..++..
T Consensus 135 ~~-------~~~~~~~~~~~-----~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~---- 195 (396)
T COG0626 135 PG-------DDEALEAAIKE-----PNTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQR---- 195 (396)
T ss_pred CC-------ChHHHHHHhcc-----cCceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCcccccccC----
Confidence 32 44556666542 37999999999999988888 8899999999999999999997544332
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecChHHHHHHH-Hhh-hcC-CCChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVVSCAR-KMS-SFG-LVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~~~~~-~~~-~~~-~~s~~~q~~~~~~l~~~~~~ 328 (483)
+ + ..+..|++.|.+|.+|-- -+=.|.++++++.+.+.+. ... ..+ .+++.....+.+-++.
T Consensus 196 -P---L-------~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkT---- 260 (396)
T COG0626 196 -P---L-------ELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRT---- 260 (396)
T ss_pred -h---h-------hcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccch----
Confidence 1 1 125568899999998622 2445767766667766642 222 233 3455544444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-Cc-eeecC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV-GI-GCLKS 360 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~-gi-~~~~~ 360 (483)
+.-+.++..++...+.+.|+++ .+ +++.|
T Consensus 261 ---L~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yP 291 (396)
T COG0626 261 ---LALRMERHNENALKIAEFLADHPKVKKVYYP 291 (396)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 3445556677788888888886 34 34444
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=131.11 Aligned_cols=303 Identities=17% Similarity=0.226 Sum_probs=208.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
+.++.+.+++|++ -|.+-+|+|+.++-+.++.+++++||.|++...++...+-++... |.++..+|-..
T Consensus 63 I~~F~~dlaeFlg----------~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEra-gl~v~eVp~tg 131 (382)
T COG1103 63 IKDFLEDLAEFLG----------MDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERA-GLNVAEVPNTG 131 (382)
T ss_pred HHHHHHHHHHHhC----------CceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhc-CCeEEecCCCC
Confidence 5778888999986 578999999999999999999999999999999876666667765 99999999766
Q ss_pred CCCcccCHHHHHHHHHHHHhcC-CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 176 SNDFKVTMEALEAAYEKAQESN-IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~-~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
...|.++++...+.|.+...++ ..+.+.++++|..--|.+.+ .++++++|+++|++++...+|.. + .-..|
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~gvPlllN~AYt~---G--rmpvs 203 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREYGVPLLLNCAYTV---G--RMPVS 203 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHcCCceEeecceee---c--ccccc
Confidence 6679999999999998877765 45778899999877888766 88999999999999999999963 2 22234
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-h-c-------CCCChHHHHHHHHhcCCh
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-S-F-------GLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~-~-------~~~s~~~q~~~~~~l~~~ 325 (483)
..+. ...++++|-+|+++ +.-.+|.+.. ..+..+..-+.+ . + ..++.... -+..++.+-
T Consensus 204 ~ke~---------g~DFiVgSGHKsmA-As~PiGvl~~-~eE~ae~V~r~Sg~~~~~KEvellGCT~rGa-pivTlmASf 271 (382)
T COG1103 204 GKEI---------GADFIVGSGHKSMA-ASAPIGVLAM-SEEWAEIVLRRSGRAFPKKEVELLGCTVRGA-PIVTLMASF 271 (382)
T ss_pred cccc---------CCCEEEecCccchh-ccCCeeEEee-hhHHHHHHHhhcccccccceeeeecccccCc-hHHHHHhcC
Confidence 3333 45688999999997 6668999988 455555432222 1 1 11222111 222333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceee--cCCceEEEeeecCchhhc--cChHHHHHHHHHHHHhcCeE-eeC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCL--KSNAGLFLWMDLHHLLKE--QTYEAEMALWRVIINEVKLN-VSP 399 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~--~~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~~~gV~-v~p 399 (483)
.++.+..++.-+. -+...++...|+++| +.-. .|...-.+.+..|.+..- +......-+++.|- +.||. |.|
T Consensus 272 P~V~eRVkrWdeE-v~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK-~RgI~GI~~ 349 (382)
T COG1103 272 PHVVERVKRWDEE-VEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELK-KRGIHGIQP 349 (382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHH-hcCcccccc
Confidence 3433333332222 344577888888874 5432 344444555665543110 00000011334444 55774 666
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|. ..++.+|+=..+.|+++..++++++++++.
T Consensus 350 G~------Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 350 GQ------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred Cc------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 64 468999995589999999999999998875
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=139.02 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=221.4
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
..|+|-..||...+...+..-..... .....++....|+...-..++.+...+...+.+| .+-.||-..+
T Consensus 27 ~~ieLIASEN~~S~aV~~A~gS~ltn------KYAEGyPgkRyYgGce~VD~vE~laierak~LFg----a~~anVQPhS 96 (413)
T COG0112 27 EHIELIASENFTSPAVMEAQGSDLTN------KYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG----AEYANVQPHS 96 (413)
T ss_pred hceeeeeccccCCHHHHHHHhhhhhh------ccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC----CCccccCCCC
Confidence 44788888887665443332211100 0011123334455555456666666677777877 5667888888
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh--cC--cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR--TG--VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~--~G--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
|++ |...++.+|++|||+|+-.+-.++++...-... .| .++++++++.+ +..+|.|++++.+.++ ++|+
T Consensus 97 Gs~-AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~-----kPK~ 169 (413)
T COG0112 97 GSQ-ANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEV-----KPKL 169 (413)
T ss_pred chH-HHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHh-----CCCE
Confidence 865 566777899999999999888777665432110 12 46677777743 5689999999998875 8898
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+.-.-..| ..++ .+++.++|.+.|.++++|-+|-.....+ ..+++... ...++.+|.+|+|
T Consensus 170 ii~G~SaY~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~-G~~p~P~~----------~AdvVTtTTHKTl-- 231 (413)
T COG0112 170 IIAGGSAYS--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAG-GVHPNPLP----------HADVVTTTTHKTL-- 231 (413)
T ss_pred EEECccccc--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhc-ccCCCCCC----------ccceEeCCcccCC--
Confidence 776422222 1233 7788888889999999999995433333 33333221 2447789999997
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHH-HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQH-LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~-~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
+|-|-|.+.+..+++.+.+++...++..+.+-.. +++.++.-.+.++.-.++..+++.++.+.|.+.|.+.|+++....
T Consensus 232 rGPrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGg 311 (413)
T COG0112 232 RGPRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGG 311 (413)
T ss_pred CCCCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCC
Confidence 8999999999766787777665444433333222 222222211111112355566678888999999999999887532
Q ss_pred c-eEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-C---CCCEEEEEecc-----CCHHHHHHHHHHH
Q 011570 362 A-GLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-P---NPGWFRVCFAN-----MDDRTMEIALSRI 430 (483)
Q Consensus 362 ~-g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-~---~~~~iRis~~~-----~~~e~l~~~l~~L 430 (483)
. +-.+.+++.. ... ...++.+|++.||.+.--..... . .+..|||+... ..++++++..+-|
T Consensus 312 TdnHl~lVDl~~~~~~-------Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I 384 (413)
T COG0112 312 TDNHLVLVDLRSKGLT-------GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLI 384 (413)
T ss_pred ccceEEEEEcccCCCC-------HHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHHH
Confidence 2 2345577762 112 24466778889998854332221 1 23459998743 3678899999999
Q ss_pred HHHHHHhh
Q 011570 431 TSFMLKNV 438 (483)
Q Consensus 431 ~~~l~~~~ 438 (483)
.+++....
T Consensus 385 ~~vl~~~~ 392 (413)
T COG0112 385 ADVLDGLK 392 (413)
T ss_pred HHHHhccc
Confidence 88887654
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-14 Score=141.41 Aligned_cols=173 Identities=20% Similarity=0.329 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
..++.+++|+|++ ....+.++++|.|+.+++.+| ++|||.|+++.-+|....+.+... |++++.+++|
T Consensus 36 v~~FE~~~ae~~G----------~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~-Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLG----------VKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLV-GAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhC----------CCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHc-CCeEEEEecC
Confidence 5789999999976 568888889999999999866 599999999999999988888875 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCcc
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSFV 253 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~~ 253 (483)
.+ .|.+|++.+|++|.+ ++|+|+..+- -|...+ +++|.++|++||++||+|.+++... |.+ +...
T Consensus 105 ~~-T~nid~~~ie~aIt~------~tKAIipVhl---~G~~~d---m~~i~~la~~~~l~vIEDaAqa~Ga~y~g-k~vG 170 (374)
T COG0399 105 PD-TLNIDPDLIEAAITP------RTKAIIPVHL---AGQPCD---MDAIMALAKRHGLPVIEDAAQAHGATYKG-KKVG 170 (374)
T ss_pred Cc-ccCCCHHHHHHHccc------CCeEEEEehh---ccCCCC---HHHHHHHHHHcCCeEEEEcchhccCeecC-cccc
Confidence 64 689999999999985 6999986643 355455 8888999999999999999987432 222 2211
Q ss_pred hHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhcC
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG 308 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~ 308 (483)
+ + + .+.+.|| +|.++ .| --|.++++++++.+..+.++..+
T Consensus 171 t---~---------G-d~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG 212 (374)
T COG0399 171 S---F---------G-DIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHG 212 (374)
T ss_pred c---c---------c-ceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhC
Confidence 1 1 1 2334566 78887 44 56899998888888877655443
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-15 Score=138.96 Aligned_cols=298 Identities=13% Similarity=0.119 Sum_probs=200.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
..+|.+.+|++..+ +.-++.+++--+....+..|. -||-.|+...-.+.+....++.. ++.-.-+..
T Consensus 218 hv~LE~eLA~LHqK----------~aALlFsSCfVANDstLftLak~lpgcei~SD~gNHASMI~GIrns-~v~K~IFrH 286 (570)
T KOG1360|consen 218 HVRLEAELADLHQK----------EAALLFSSCFVANDSTLFTLAKKLPGCEIFSDEGNHASMIQGIRNS-RVPKHIFRH 286 (570)
T ss_pred hhhHHHHHHHHhcC----------cceeeeeeeeeccchHHHHHHHHCCCcEEeccccchHHHHHHhhhc-CCcceeecc
Confidence 56888899988752 233333333333333333332 37877887777887777777764 655444432
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
-|++.|++.+++... ..+|.|-+.+.+..+|.+.| +++|++++++||.+-++||+++-..|+. .. .
T Consensus 287 -------ND~~hL~~lL~~~~~--svPKivAFEtVhSM~Gavcp---leelcDvah~yGAiTFlDEVHAVGlYG~-rG-a 352 (570)
T KOG1360|consen 287 -------NDLDHLEQLLQSSPK--SVPKIVAFETVHSMDGAVCP---LEELCDVAHKYGAITFLDEVHAVGLYGP-RG-A 352 (570)
T ss_pred -------CCHHHHHHHHHhCCC--CCCceEEEeeeeccCCCcCC---HHHHHHHHHHhCceeeeehhhhhccccC-CC-C
Confidence 378999999986433 25788888999999999999 8888999999999999999998777765 21 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c---CCCChHHHHHH---HHhcCChh
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F---GLVSSQTQHLI---ATMLSDDQ 326 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~---~~~s~~~q~~~---~~~l~~~~ 326 (483)
.+.+-.. ......|+-+++.|+||+-| ||+.+ ...+.+.++.+.. | ...++.....+ ...|...+
T Consensus 353 GvgerdG----vm~kvDiIsGTLgKafGcVG---GYIAa-t~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~e 424 (570)
T KOG1360|consen 353 GVGERDG----VMHKVDIISGTLGKAFGCVG---GYIAA-TRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEE 424 (570)
T ss_pred CccccCC----cchhhhhcccchhhhccccc---ceehh-hhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhh
Confidence 2221110 02234577899999999988 99998 4567777665442 2 11222222212 12232221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
....+++.+++..++++.|.+.|+++.+.... .+-+.+.+... ..+.+..|+.++||+|-.-.+....
T Consensus 425 -----g~~lR~~hqrnv~~~kq~l~~~GiPVi~~pSH-IiPv~vgda~l------~~~~sd~Li~~h~iYvQaINyPTV~ 492 (570)
T KOG1360|consen 425 -----GRVLRRQHQRNVKYVKQLLMELGIPVIPNPSH-IIPVRVGDAAL------AKQASDILISKHNIYVQAINYPTVA 492 (570)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHcCCcccCCCcc-eeeeeccCHHH------HHHHHHHHHHhcCeEEEeccCCccc
Confidence 23445566777889999999999999887764 66666654322 2267888999999999766544432
Q ss_pred -CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 407 -NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 407 -~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+...+||+..- .+++-++.+++.|..++++..
T Consensus 493 rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 493 RGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred ccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 34569998853 488889999999999998865
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.9e-14 Score=142.63 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=113.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~~G~~~~~v 171 (483)
...+++.+|++.+ ....|++++|. .++..++.+++++||+|+++...|++... .+... |++++.+
T Consensus 71 ~~~le~~la~l~g---------~~~~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~-Gi~v~~v 139 (437)
T PRK05613 71 VEALENRIASLEG---------GVHAVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRL-GIEVTFV 139 (437)
T ss_pred HHHHHHHHHHHhC---------CCeEEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhc-CeEEEEE
Confidence 4566777777655 23455555555 78888888889999999999999987643 33444 9999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+ +. .|++.+++++++ ++++|++.+|.||+|.+.+ +++|.++|+++|+++|+|.+++....
T Consensus 140 d-~~-----~d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~----- 199 (437)
T PRK05613 140 E-NP-----DDPESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL----- 199 (437)
T ss_pred C-CC-----CCHHHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc-----
Confidence 7 22 278999998864 7899999999999999999 88888889999999999999863211
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS 292 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~ 292 (483)
..+. .+ ...+++.|++|.++-.|--+|-+++
T Consensus 200 ~~p~-~~---------GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 200 VRPL-EL---------GADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred cChH-Hh---------CCCEEEeeccceecCCCcceeEEEE
Confidence 1111 12 3457888999998755544454333
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.6e-14 Score=143.08 Aligned_cols=305 Identities=15% Similarity=0.071 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-CC-CeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-PG-DAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~g-d~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++.... . +| .+|+...-+|++.........+-
T Consensus 84 ~~~~~~la~~l~~~~p----~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~ 159 (423)
T PRK05964 84 HEPAERLAQRLVALTP----GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGG 159 (423)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcc
Confidence 3455666666665421 124689999999999999887642 1 23 57888888887754332221111
Q ss_pred ----------EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcCCC-CHHHHHHHHHHHhhcCcE
Q 011570 167 ----------QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-PSNPLGTFL-DRETLKDIVSFINEKNIH 234 (483)
Q Consensus 167 ----------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~~~-~~~~l~~i~~~a~~~~~~ 234 (483)
.+..++.+..+....+++.+++.+.+. +.++.+|++.. .++..|..+ +.+.+++|.++|++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~l 236 (423)
T PRK05964 160 MHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVL 236 (423)
T ss_pred ccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 112222221110112267777777532 23566666653 367778766 899999999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh---h-----h
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM---S-----S 306 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~---~-----~ 306 (483)
+|+||++.++...+ .. ... .... -...+ -++||.++.+++++|++++ ++++.+.+... . .
T Consensus 237 lI~DEv~tg~gr~G-~~-~a~-~~~~------v~pDi--~~~~K~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~~ 304 (423)
T PRK05964 237 LIFDEIATGFGRTG-TL-FAC-EQAG------VSPDI--MCLSKGLTGGYLPLAATLC-TAEIFEAFYSDDRAKAFMHSP 304 (423)
T ss_pred EEEechhhCCCcCc-ch-hHH-HhcC------CCCCe--eeeehhhhcCcccceEEEE-cHHHHHhhhcCCcccccccCC
Confidence 99999997743332 21 111 1111 11122 3789999733389999888 56666655321 0 1
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee--cCCceEEEeeecCchhhccChHHHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL--KSNAGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~--~~~~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
.+..++++..++.+.++--.. . ...+++.+.-+++.+.|+++ +.+.. ...-|+++.+.+..... . ....
T Consensus 305 T~~~np~~~aaa~a~l~~l~~-~----~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~--~-~~~~ 376 (423)
T PRK05964 305 SYTANPLACAAANASLDLFED-E----PVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVL--E-RDGP 376 (423)
T ss_pred CCCcCHHHHHHHHHHHHHHHh-c----CHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcc--h-hHHH
Confidence 122466666665555541110 1 11222333334444444433 22211 12234566677753210 0 1123
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.+...|+ ++||.+.+.. +.+|++... .+++++++++++|++++++
T Consensus 377 ~l~~~l~-~~Gv~v~~~~-------~~lR~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 377 ALRAFAL-ERGVLLRPLG-------NTIYLMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred HHHHHHH-HCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence 5666666 4699997631 369999875 5999999999999998865
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-13 Score=138.69 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=136.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~~G~~~~~v 171 (483)
..+|.+.++++.+ .+..+++++++.||.+++.+++++||+|+++.+.|+.... .+.. .|++++.+
T Consensus 66 ~~~lE~~la~leg----------~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~-~Gi~v~fv 134 (384)
T PRK06434 66 VQAFEEKYAVLEN----------AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKT-LGIHVDYI 134 (384)
T ss_pred HHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHh-cCcEEEEE
Confidence 4567777777754 3567888888899999999999999999999887766553 3444 49999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.++.+.+.++. .++++|++..|+|||+.+.+ +++|+++|++++ +++|.+++.. +.. .
T Consensus 135 d~~~~~~~~l~~--------------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~-~~~-~- 192 (384)
T PRK06434 135 DTDRLNSLDFDP--------------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASP-YNQ-N- 192 (384)
T ss_pred CCCChhheeecC--------------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCc-ccC-C-
Confidence 876433333221 26899999999999999877 888888888988 4569997532 222 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhh-hcCCC-ChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMS-SFGLV-SSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~-~~~~~-s~~~q~~~~~~l~~~~~~ 328 (483)
++ . ....+++.|.+|.++-+| .=.|.+++.++.+.+.+.... ..+.. ++.....+..-|+.
T Consensus 193 --pl-~---------~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~t---- 256 (384)
T PRK06434 193 --PL-D---------LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKT---- 256 (384)
T ss_pred --ch-h---------cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCc----
Confidence 11 1 134577889999996434 446777776666655554332 33332 33322222222332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+.+
T Consensus 257 ---L~~R~~r~~~~a~~~a~~L~~~ 278 (384)
T PRK06434 257 ---LGLRMEKHNKNGMELARFLRDS 278 (384)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444566667778888876
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-13 Score=137.62 Aligned_cols=315 Identities=12% Similarity=0.067 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhhhCCCCCc-CCCcEEEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcC---------
Q 011570 98 EFRNAVAKFMGKVRGNRITF-DPDRIVMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTG--------- 165 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G--------- 165 (483)
+-..++|+.+.+.. +- ....+++++++++++..++... ......|+...-.|++.....-.+.|
T Consensus 99 e~~v~~ae~L~~~~----p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~ 174 (447)
T COG0160 99 EPYVELAEKLTALA----PGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGF 174 (447)
T ss_pred hhHHHHHHHHHHhC----CcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCC
Confidence 44555555555432 12 3567999999999999998664 12345688888887654332211111
Q ss_pred ----cEEEEeecC--CCCCccc--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhh
Q 011570 166 ----VQLVPVVCD--SSNDFKV--------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINE 230 (483)
Q Consensus 166 ----~~~~~v~~~--~~~~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~ 230 (483)
..+..+|.+ ..+.|.. ..+.++..+........++.++++...+.-.|.+. |.+.++++.++|++
T Consensus 175 ~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~ 254 (447)
T COG0160 175 GPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCRE 254 (447)
T ss_pred CCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHH
Confidence 123444433 2222222 23445555544433444677777776677778755 66679999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-hhhcCC
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-MSSFGL 309 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~~~~~~ 309 (483)
||+++|+||+..++..+ ..+.++....- ...|+ ++||.+| .|+.+|.++. .+++.+.... ....+.
T Consensus 255 ~gillI~DEVQtG~GRT--G~~fa~E~~gv-------~PDiv--t~aK~ig-~G~Pl~avv~-r~ei~~~~~g~~~~Tf~ 321 (447)
T COG0160 255 HGILLIADEVQTGFGRT--GKMFAFEHFGV-------EPDIV--TLAKSLG-GGLPLSAVVG-RAEIMDWPPGGHGGTFG 321 (447)
T ss_pred cCCEEEEeccccCCCcc--ccchhhhhcCC-------CCCEE--Eeccccc-CCCceeEEec-cHHhcccCCcccCCCCC
Confidence 99999999999985333 34445443321 22233 7899999 7999999999 4555442211 222244
Q ss_pred CChHHHHHHHHhcCChh--HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhc--cChHHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQ--FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE--QTYEAEMAL 385 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~~ 385 (483)
.|+.+.+++.+.|+.-+ -+.++..+.-++++++...+.+.. ..--....-|+++-+++-+.-+. ........+
T Consensus 322 GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~---~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i 398 (447)
T COG0160 322 GNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKH---PLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKI 398 (447)
T ss_pred cCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhc---CceecccccceEEEEEEecCCCCCCCCHHHHHHH
Confidence 67777777666665211 122223333333333333333322 21112234468888888643211 222334466
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++++ +|+.+..+..+ .+.+||.... +++++++++++.|.++++..
T Consensus 399 ~~~~~~-~Glil~~~G~~----~nviRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 399 VARAFE-RGLLLLTCGPH----GNVLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred HHHHHH-cCCEEeccCCC----CcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 777775 59988765433 4689999976 49999999999999998764
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=140.07 Aligned_cols=298 Identities=12% Similarity=0.098 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------CCC-CeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------DPG-DAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
..++...+|+++.+.. ..+.+++++++++++..++..+. ++| ..|+..+.+|++.........|...
T Consensus 76 ~~~~~~~la~~l~~~~------~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~ 149 (395)
T PRK03715 76 YNEPMAKLAGLLTQHS------CFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPG 149 (395)
T ss_pred cCHHHHHHHHHHhhcc------CCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcc
Confidence 4677888899887531 24689999999999999998764 123 5788888888765433322223221
Q ss_pred E---EeecCCCCCc----ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccc
Q 011570 169 V---PVVCDSSNDF----KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 169 ~---~v~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
. ..|.. .++ ..|++.+++.+.+ ++.+|++...++..|.+. +.+.+++|.++|++||+++|+||+
T Consensus 150 ~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv 221 (395)
T PRK03715 150 WDTIFAPQV--PGFPKAELNDIASVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEV 221 (395)
T ss_pred cccCCCCCC--CCceeeCCchHHHHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 11111 111 1367888887742 566666665566667764 688999999999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhcCCCChHHHHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQTQHLIA 319 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~~~~s~~~q~~~~ 319 (483)
+.+ |+..........+.- .+| +.++||.+| .|+.+|.+++.+ ++....... ...+..++++.+++.
T Consensus 222 ~tG--~GRtG~~~a~~~~gv-----~PD----i~t~gK~lg-~G~p~~av~~~~-~i~~~~~~~~~~T~~g~pl~~aaal 288 (395)
T PRK03715 222 QTG--CGRTGTLFAYELSGI-----EPD----IMTLGKGIG-GGVPLAALLAKA-EVAVFEAGDQGGTYNGNPLMTAVGV 288 (395)
T ss_pred ccC--CCCCcchhhHhhcCC-----CCc----eeeehhhhh-CCcceEEEEEcc-ccccccCCCcCCCCCCCHHHHHHHH
Confidence 987 433122111111110 222 248899998 789999998854 443211111 111224555555444
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
+.|+- +++ ....+.+++.-+++.+.|++ .++..... -|+++-+.+..... ..-...+..++ +.||
T Consensus 289 a~L~~---l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG-~Glm~~i~l~~~~~----~~~~~~~~~~~-~~Gi 357 (395)
T PRK03715 289 AVISQ---LLA--PGFLEGVRARGEYLKEKLLELSEERGLEGERG-EGLLRALLLGKDIG----PQIVEKARDMQ-PDGL 357 (395)
T ss_pred HHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEc-ceeEEEEEecCchH----HHHHHHHHhcc-CCCE
Confidence 44432 110 12233444444555555543 35433333 35677777753100 01112222222 2399
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+.+.. ...+||+... ++++++++++++|++++++.
T Consensus 358 ~~~~~~------~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 358 LLNAPR------PNLLRFMPALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEeecC------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 886431 3579999976 59999999999999988753
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=141.57 Aligned_cols=337 Identities=17% Similarity=0.164 Sum_probs=185.3
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE--
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM-- 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i-- 124 (483)
..|+|-..||...+. +.+++...... ...++ +.....|+...-..++.+...+...+.++ +++++..+
T Consensus 21 ~~l~LiaSEN~~Sp~-v~~al~S~l~n--kyaeg---~pg~ryy~G~~~id~iE~la~~ra~~lF~----~~~~~w~anv 90 (399)
T PF00464_consen 21 STLNLIASENYMSPA-VREALGSDLTN--KYAEG---YPGKRYYGGCEYIDEIEELAIERAKELFG----AEPKEWYANV 90 (399)
T ss_dssp HSEE-CTT-----HH-HHHHHTSGGGG--S-TTE---ETTEESSSSTHHHHHHHHHHHHHHHHHHT-----STTTEEEE-
T ss_pred cCccccCcccccCHH-HHHHhCCccee--ecccc---CCCcccccCcchhhHHHHHHHHHHHHHhC----CCcccceEEe
Confidence 347888888876643 33433221000 00011 11112333333345666666677777776 45443222
Q ss_pred -eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-----H-----hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHH
Q 011570 125 -SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-----L-----RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKA 193 (483)
Q Consensus 125 -t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-----~-----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 193 (483)
..+++.|+..++.+|++|||+|+..++..+++... . .-. ..+.++++++++ +..+|.+++++.+++.
T Consensus 91 qp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~-~~~~~~y~~d~~-~~~ID~d~l~~~a~~~ 168 (399)
T PF00464_consen 91 QPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGL-YFESVPYPVDPD-TGLIDYDELEKLAKEH 168 (399)
T ss_dssp --SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHH-HSEEEEEEB-TT-TSSB-HHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccc-eEEEEeeeeecC-CCeECHHHHHHHHhhc
Confidence 24566788999999999999999998877655321 1 112 468888998853 5789999999999875
Q ss_pred HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 194 QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
++|+|++..-+.|- .-+.+++.++|.+.|.+++.|-+|......+ ..+++.... ..|+.
T Consensus 169 -----kPklIi~G~S~y~~-----~~d~~~~reIad~vga~l~~D~sH~~GLIa~-g~~~~P~~~----------ADvvt 227 (399)
T PF00464_consen 169 -----KPKLIICGASSYPR-----PIDFKRFREIADEVGAYLMADISHIAGLIAG-GLFPNPFPY----------ADVVT 227 (399)
T ss_dssp -------SEEEEE-SSTSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHT-TSS--GCCT----------SSEEE
T ss_pred -----CCCEEEECchhccC-----ccCHHHHHHHHHhcCcEEEecccccccceeh-heecCcccc----------ceEEE
Confidence 88987776433332 2237888888889999999999995443333 333332222 33778
Q ss_pred ecCccccCCCCceEEEEEec-------------ChHHHHHHHHhhhcCCCChH---HHHHHHHhcCChhHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYSY-------------NDQVVSCARKMSSFGLVSSQ---TQHLIATMLSDDQFVEKFIAESAK 337 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~-------------~~~l~~~~~~~~~~~~~s~~---~q~~~~~~l~~~~~~~~~~~~~~~ 337 (483)
+|..|+| +|-|-|.+++. .+.+.+.+.....++..+.+ ..++.+..+.. ......++..+
T Consensus 228 ~sThKtl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~e--a~~~~fk~Ya~ 303 (399)
T PF00464_consen 228 GSTHKTL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKE--ALSPEFKEYAK 303 (399)
T ss_dssp EESSGGG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHH--HTSHHHHHHHH
T ss_pred eeccccc--cccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhc--ccCHHHHHHHH
Confidence 9999998 89999999996 36777777665444332222 11222222221 11122356667
Q ss_pred HHHHHHHHHHHhhhcCCceeec-CCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC---CCCEEE
Q 011570 338 RIAERHKAFTWGLSQVGIGCLK-SNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP---NPGWFR 412 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~gi~~~~-~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~---~~~~iR 412 (483)
++.++.+.|.+.|.+.|+++.. ...+-.+|+++... .+ ...+...|++.||.+..-...+.. .+..+|
T Consensus 304 qVv~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~-------g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlR 376 (399)
T PF00464_consen 304 QVVKNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGID-------GKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLR 376 (399)
T ss_dssp HHHHHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS--------HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEE
T ss_pred HHHHHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccc-------hHHHHHHHHhcCeeecccccCCCCCCCCCCEEE
Confidence 7788999999999999998874 22345778888642 12 134667788999998543222211 235699
Q ss_pred EEecc-----CCHHHHHHHH
Q 011570 413 VCFAN-----MDDRTMEIAL 427 (483)
Q Consensus 413 is~~~-----~~~e~l~~~l 427 (483)
|+... ..++++++..
T Consensus 377 lGT~~lT~rG~~e~dm~~iA 396 (399)
T PF00464_consen 377 LGTPALTRRGMKEEDMKEIA 396 (399)
T ss_dssp EESHHHHHTT--HHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHH
Confidence 99843 2445555443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-13 Score=136.84 Aligned_cols=314 Identities=14% Similarity=0.098 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~------- 166 (483)
.+....+|+.+.+... -. .+.|++++++++++..++.... .....|+...-+|.+.........+.
T Consensus 84 ~~~~~~lae~L~~~~p----~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~ 159 (445)
T PRK08593 84 HEPLVRLAKKLCELAP----GDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRK 159 (445)
T ss_pred CHHHHHHHHHHHHhCC----CCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccC
Confidence 3444555665554321 12 2589999999999999987531 12356888888887654322211121
Q ss_pred ------EEEEeecCCCC--Ccc-cCH-------HHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHh
Q 011570 167 ------QLVPVVCDSSN--DFK-VTM-------EALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFIN 229 (483)
Q Consensus 167 ------~~~~v~~~~~~--~~~-~d~-------~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~ 229 (483)
.++.+|.++.. .+. .+. +.+++.+.+.. ...++.+|++....+..|.+ .+.+.+++|.++|+
T Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~ 238 (445)
T PRK08593 160 YGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVIETIQGDGGLLEPVPGYFEALYKFCR 238 (445)
T ss_pred CCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 12223322110 010 111 23333332210 12357666666657777886 68889999999999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c-
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F- 307 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~- 307 (483)
+||+++|.||++.++...+ .+.....+.- .++ + -++||.+| .|+++|++++ ++.+.+.+..... +
T Consensus 239 ~~g~llI~DEv~tg~GrtG--~~~a~~~~gv-----~pD--i--~t~gK~l~-~G~p~gav~~-~~~i~~~~~~~~~~~T 305 (445)
T PRK08593 239 EHGILFAVDDIQQGLGRTG--KWSSISHFNI-----TPD--L--MSFGKSLA-GGMPMSAIVG-RKEIMESLEAPAHLFT 305 (445)
T ss_pred HcCCEEEEechhhCCCcCc--hHHHHHhcCC-----CCC--E--eeeccccc-CCcccEEEEE-cHHHHhhhccCCCCCC
Confidence 9999999999997643222 1111121210 223 2 38899998 8899999999 5666665532111 1
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchh--hccChHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLL--KEQTYEA 381 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~--~~~~~~~ 381 (483)
...++++.+++.+.|+.-. + ....++.++.-+++.+.|++ +++......-|+++.+.+.... .......
T Consensus 306 ~~~~pl~~aaa~a~l~~l~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~~~~~~~~~~~~~ 380 (445)
T PRK08593 306 TGANPVSCAAALATIDMIE---D--ESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIVSDKKLKTRDNEA 380 (445)
T ss_pred CCCCHHHHHHHHHHHHHHH---h--ccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEecCCCcCCCcHHH
Confidence 2356666666555553211 0 11222233333344444433 3333333344566666664211 0011112
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
...+...+++ +||.+.+.. .+.+|++... ++++++++++++|.+++++..+.
T Consensus 381 ~~~~~~~~~~-~Gv~~~~~~------~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~~~ 433 (445)
T PRK08593 381 ALKICNYCFE-HGVVIIAVA------GNVLRFQPPLVITYEQLDTALNTIEQAFTALEAG 433 (445)
T ss_pred HHHHHHHHHH-CCeEEeccC------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence 3356677764 699986531 2579999976 59999999999999999876544
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-13 Score=140.08 Aligned_cols=317 Identities=13% Similarity=0.061 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCc-EEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~-i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~------- 166 (483)
.+.+..+|+.+.+.... ...... +++++++++++..++.... ....+|+...-+|.+.........|.
T Consensus 81 ~~~~~~lae~L~~~~p~--~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~ 158 (442)
T TIGR00709 81 TPLKDAFIEALLNIIPK--RKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAV 158 (442)
T ss_pred cHHHHHHHHHHHHhCCC--cCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccC
Confidence 45666677776654320 001134 4556899999998886542 22357898898888766443332221
Q ss_pred -----EEEEeecCCCC--Ccc----cCHHH----HHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhh
Q 011570 167 -----QLVPVVCDSSN--DFK----VTMEA----LEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINE 230 (483)
Q Consensus 167 -----~~~~v~~~~~~--~~~----~d~~~----l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~ 230 (483)
.+..++.+... .|. .+.+. +++.+........++.+|++... +|+...+.+.+.++++.++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~ 238 (442)
T TIGR00709 159 GMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK 238 (442)
T ss_pred CCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 12222222110 011 01222 23333211111135666666654 4554456899999999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcC
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFG 308 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~ 308 (483)
||+++|.||++.++...+ .+.+...+.- .+| ++ ++||.+| .|+++|+++++++ + +.+.. ....+
T Consensus 239 ~g~llI~DEV~tGfGRtG--~~~a~~~~gv-----~PD--iv--~~gK~l~-~G~Pigav~~~~~-~-~~~~~~~~~~T~ 304 (442)
T TIGR00709 239 HDIKLILDEVQAGFGRSG--TMFAFEHAGI-----EPD--FV--VMSKAVG-GGLPLAVLLIAPE-F-DAWQPAGHTGTF 304 (442)
T ss_pred cCCEEEEeccccCCCCCC--chhHHHHcCC-----CCc--EE--EEccccc-CCcccEEEEEchH-H-hccCCCcCCCCC
Confidence 999999999998854443 2333333211 223 33 3799999 5999999999544 4 22211 11123
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhcc-------
Q 011570 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQ------- 377 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~------- 377 (483)
..++++++++.+.|+.-. + ....+.++++.+++.+.|++ +++......-|+++.+++.......
T Consensus 305 ~gnpla~aaa~a~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~ 379 (442)
T TIGR00709 305 RGNQLAMVTGTEALNYWK--D---DNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYP 379 (442)
T ss_pred CcCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCC
Confidence 367888887777764311 1 11222334444445554443 2332233344677778774321000
Q ss_pred -ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 378 -TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 378 -~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.......+...++ ++||++.+... ..+.+|+..+. ++++++++++++|.+++++..+
T Consensus 380 ~~~~~~~~~~~~~~-~~Gvl~~~~~~----~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 438 (442)
T TIGR00709 380 RDCELAAAIQGACF-ENGLLLETGGR----EGEVFRLLCPITIDQEECEEGISRFKQAVEEALA 438 (442)
T ss_pred cchHHHHHHHHHHH-HCCeEEeecCC----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0111234555555 56999876432 23579999876 5999999999999999987643
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=136.16 Aligned_cols=336 Identities=14% Similarity=0.156 Sum_probs=202.1
Q ss_pred CCCCcccccchhhhhc----HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAENLLC----HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
..+.+||+..+.-++. ++.+.+++.+.. ..-..|+.+ .++.-.+|+.+.++.+ +.
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l-------------~~G~~fg~P---te~Ei~~Aell~~~~p-----~~ 109 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQL-------------ERGLSFGAP---TELEVELAELLIERVP-----SI 109 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHH-------------HhcCCCCCC---CHHHHHHHHHHHHhcC-----cc
Confidence 3455788887765542 455666665421 122456544 4566677777776543 45
Q ss_pred CcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC--c-----------------EEEEeecCCCCC
Q 011570 120 DRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG--V-----------------QLVPVVCDSSND 178 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G--~-----------------~~~~v~~~~~~~ 178 (483)
+.|-++|++|||...+++... ..-|+|+..+-||.+..+.+....| . .++.+|
T Consensus 110 e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~------ 183 (432)
T COG0001 110 EKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLP------ 183 (432)
T ss_pred cEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEec------
Confidence 899999999999998886641 2237899999999887776543222 1 122222
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNP--SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P--~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
|+ |++.+++++++. +.++.+|++ .| .| .|.+. .++.+++|.++|++||+++|.||+...+...- ......
T Consensus 184 yN-D~~al~~~~~~~---g~~IAaVIv-EPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~-gGaq~~ 256 (432)
T COG0001 184 YN-DLEALEEAFEEY---GDDIAAVIV-EPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVAL-GGAQGY 256 (432)
T ss_pred CC-CHHHHHHHHHHc---CCcEEEEEe-ccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCC-cccccc
Confidence 22 899999998763 345655554 45 56 46655 55669999999999999999999998764442 222233
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-----CCCChHHHHHHHHhcCChhHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-----GLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-----~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
..+. +| +.+|+|..| .|+.+|.+-+ .+++.+.+...... .+.++++..|..+.+..-. +
T Consensus 257 ~gi~-------PD----lttlGKiIG-GGlP~ga~gG-r~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~---~ 320 (432)
T COG0001 257 YGVE-------PD----LTTLGKIIG-GGLPIGAFGG-RAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELM---T 320 (432)
T ss_pred cCcC-------cc----hhhhhhhhc-CCcceeeecc-HHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHH---h
Confidence 3332 22 458999999 9999999888 56676654332221 2245555555444443211 0
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhcCCceeec-CCceEEEeeecCc-h--h-h--ccChHHHHHHHHHHHHhcCeEeeC
Q 011570 331 FIAESAKRIAERHKAFT----WGLSQVGIGCLK-SNAGLFLWMDLHH-L--L-K--EQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~----~~L~~~gi~~~~-~~~g~f~~~~l~~-~--~-~--~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
.+...+++.+..++|. +.+.++|+++.. ..|++|-..-.+. . . + ....+.-..++..|++ .||.+.|
T Consensus 321 -~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~-~GV~l~p 398 (432)
T COG0001 321 -EEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLN-RGVYLAP 398 (432)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHh-CCcccCC
Confidence 0002233333334444 444455776653 2333333221111 1 0 0 0111223456777775 4999988
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+. | .. .=+|.+ .++++++..++++.++++...
T Consensus 399 s~-~----ea-~flS~a-hte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 399 SQ-F----EA-GFLSTA-HTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred cc-c----cc-eeeecc-cCHHHHHHHHHHHHHHHHHhh
Confidence 75 2 12 236666 599999999999998887764
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-14 Score=142.15 Aligned_cols=287 Identities=12% Similarity=0.079 Sum_probs=177.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCc-CCCcEEEeC-ChhHHHHHHHHHhcCC-CCeEEEeCCCCcChHHH-H-hhhcCc-EEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITF-DPDRIVMSG-GATGAHETVAFCLADP-GDAFLVPTPYYPGFDRD-L-RWRTGV-QLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~-G~~~al~~~~~~l~~~-gd~Vlv~~P~y~~~~~~-~-~~~~G~-~~~ 169 (483)
+.+.|+.++++++ . ++++|+++. ++|.+++.++..++++ ++.|++ .-.|+.-... + +.. |. ++.
T Consensus 50 ~~~~r~~l~~l~~--------~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g~f~~~~~~~~~~~~-g~~~v~ 119 (378)
T PRK03080 50 LKRVIEGTRELLS--------LPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WESFGSKWATDVVKQL-KLEDPR 119 (378)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eCHHHHHHHHHHHhhc-CCCCce
Confidence 3566777777765 3 345799886 8999999999999875 445554 3345442222 2 343 88 888
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ +..+|+++++ .++.|.+++.+|.||...+ +++|++ +++|+++|+|-+.+ ++.
T Consensus 120 ~~~~~~--g~~~d~~~i~-----------~~~~V~~~h~~t~tG~~~p---i~~I~~--~~~g~~~vVDa~qs---~G~- 177 (378)
T PRK03080 120 VLEADY--GSLPDLSAVD-----------FDRDVVFTWNGTTTGVRVP---VARWIG--ADREGLTICDATSA---AFA- 177 (378)
T ss_pred EeccCC--CCCCCHhhcC-----------CCCCEEEEecCCccceecc---chhhcc--ccCCCeEEEecccc---ccc-
Confidence 887653 3356766532 2456899999999999999 666666 67899999999986 333
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhh--------------------h--
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMS--------------------S-- 306 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~--------------------~-- 306 (483)
.+ .++.. ..+++.|..|.++. +| +|+++.+++.+ +.+.... .
T Consensus 178 ~p-idv~~-----------iD~~~~s~~K~l~~P~G--~g~l~v~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (378)
T PRK03080 178 LP-LDWSK-----------LDVYTFSWQKVLGGEGG--HGMAILSPRAV-ERLESYTPARPIPKFFRLTKGGKAIENSFK 242 (378)
T ss_pred CC-CCHHH-----------CcEEEEehhhhCCCCCc--eEEEEECHHHH-HhhhcccCCCCCchhheeccchHHhhhhhc
Confidence 22 33322 23778899999853 55 89999854433 3222110 0
Q ss_pred cCCCChHH---HHHHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCC-ceeecC----CceEEEeeecCchhhc
Q 011570 307 FGLVSSQT---QHLIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVG-IGCLKS----NAGLFLWMDLHHLLKE 376 (483)
Q Consensus 307 ~~~~s~~~---q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~----~~g~f~~~~l~~~~~~ 376 (483)
.+..+++. ..++.++++ ++.+. ++...++.++..+++.+.|++.+ +.+..+ .++..+.+.++.. +
T Consensus 243 ~~t~~tp~i~~i~~l~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~-~- 317 (378)
T PRK03080 243 GQTINTPSMLTVEDYLDQLD---WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA-Q- 317 (378)
T ss_pred CCcccCchHHHHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc-h-
Confidence 01111222 222222222 22221 45556677777888888888875 555421 2223455566640 0
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.. ...++...++++ ||.++.|... ...+.+|+|+.. .++++++.+++.|++++++.+.
T Consensus 318 ~~--~~~~~~~~l~~~-~i~v~~g~~~--~~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 318 AA--VDAAAVAKLLRE-NGAVDIEPYR--DAPNGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred HH--HHHHHHHHHHHc-CCeecccccc--CCCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 00 112455666655 8888876532 134689999976 6999999999999998876653
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-13 Score=140.11 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+.+... -..+.+++++++++++..++.... . + ..+|+...-+|.+.........|.
T Consensus 95 ~~~~~la~~l~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~ 170 (460)
T PRK06541 95 PPAIELAERLAALAP----GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAF 170 (460)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhh
Confidence 444555655554321 124689999999999998886542 1 1 367888888887654332211121
Q ss_pred ---------EEEEeecCCCCC---cccC--------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCC-HHHHHHH
Q 011570 167 ---------QLVPVVCDSSND---FKVT--------MEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLD-RETLKDI 224 (483)
Q Consensus 167 ---------~~~~v~~~~~~~---~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~-~~~l~~i 224 (483)
.+..+|.+.... |.-+ ++.+++.+.. .+++..+.++..| ++++|.+.+ .+.+++|
T Consensus 171 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l 247 (460)
T PRK06541 171 KAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEF---EGPDTVAAVFLEPVQNAGGCFPPPPGYFERV 247 (460)
T ss_pred ccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHh---cCCCCEEEEEECCccCCCCCccCCHHHHHHH
Confidence 112222211000 1112 2455555542 1223345556667 889999765 8889999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||++.++...+ .......+.- .+| ++ +|||.+| .|+ ++|+++++ +.+.+.+..
T Consensus 248 ~~lc~~~g~llI~DEV~tGfGR~G--~~~a~~~~gv-----~PD--iv--t~gK~l~-~G~~pigav~~~-~~i~~~~~~ 314 (460)
T PRK06541 248 REICDRYDVLLVSDEVICAFGRLG--EMFGCERFGY-----VPD--II--TCAKGIT-SGYSPLGAMIAS-DRLFEPFLD 314 (460)
T ss_pred HHHHHHcCCEEEEechhhCCCcCc--hhhhhhhcCC-----CCC--EE--Eeccccc-CCccceeEEEEc-HHHHHHhhc
Confidence 999999999999999997642222 1112211110 223 22 6899998 887 99999994 555554432
Q ss_pred h-hhc-----CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cc-eeecCCceEEEeeecCch
Q 011570 304 M-SSF-----GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GI-GCLKSNAGLFLWMDLHHL 373 (483)
Q Consensus 304 ~-~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi-~~~~~~~g~f~~~~l~~~ 373 (483)
. ..+ ...++++.+++.+.++. ++ .....+.++++.+++.+.|+++ ++ ...... |.++-+++...
T Consensus 315 ~~~~~~~~~T~~gnp~~~aaala~l~~---l~--~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl~~~ie~~~~ 388 (460)
T PRK06541 315 GPTMFLHGYTFGGHPVSAAVALANLDI---FE--REGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGD-GYFYGIELVKD 388 (460)
T ss_pred CCCccccCCCCCCCHHHHHHHHHHHHH---HH--hccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec-ceEEEEEEecC
Confidence 1 111 22355555544444332 11 1123345566666676666654 22 123344 45666776421
Q ss_pred hhc-----cCh-H--HHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 374 LKE-----QTY-E--AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 374 ~~~-----~~~-~--~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
... ... . ....+...++ ++||.+.+.. .+...+||+... ++++++++++++|.+++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 389 KATKETFTDDESERLLRGFLSPALF-EAGLYCRADD----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred cccccCCcchhhhhhHHHHHHHHHH-hCCeEEEecC----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 100 000 0 0124556666 4699998631 124579999976 59999999999999998753
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-13 Score=136.39 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc--------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------- 166 (483)
.+....+|+.+.+..+. -..+.+++++++++++..++.... ....+|+...-+|.+.........|.
T Consensus 96 ~~~~~~lAe~L~~~~p~---~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~ 172 (441)
T PRK05769 96 YEPAVELAERLVEIAPG---GFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGF 172 (441)
T ss_pred CHHHHHHHHHHHHhCCC---CCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCC
Confidence 34556677776654210 013689999999999999886532 22367888888887765432221121
Q ss_pred -----EEEEeecCCC--CCcc-cC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHh
Q 011570 167 -----QLVPVVCDSS--NDFK-VT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFIN 229 (483)
Q Consensus 167 -----~~~~v~~~~~--~~~~-~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~ 229 (483)
.+..++.+.. ..|. -+ ++.+++.+.+......++.+|++.......|.+. +.+.+++|.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~ 252 (441)
T PRK05769 173 FPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD 252 (441)
T ss_pred CCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH
Confidence 1223332210 0011 01 2234442221101123566655554455567754 6788999999999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hcC
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SFG 308 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~~ 308 (483)
+||+++|+||++.++...+ .+.....+.- .+| ++ +|||.+| .|+++|+++++ +.+........ ..+
T Consensus 253 ~~g~lli~DEv~tG~gr~G--~~~a~~~~gv-----~pD-iv---t~~K~l~-~G~p~gav~~~-~~i~~~~~~~~~~T~ 319 (441)
T PRK05769 253 KYGILLIDDEVQTGMGRTG--KMFAIEHFGV-----EPD-II---TLAKAIA-GGLPLGAVIGR-AELMFLPPGSHANTF 319 (441)
T ss_pred HcCCEEEEechhhCCCccc--ceehhhccCC-----CCC-EE---EEccccc-CCcccEEEEEe-hhhhhcCCCCCCCCC
Confidence 9999999999998743332 2222222211 222 22 6899998 89999999984 44444322111 112
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHH
Q 011570 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMA 384 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~ 384 (483)
..+++++.++.+.|+- +++ ...+++++.-+++.+.|+++ ++......-|+++-+.+..............
T Consensus 320 ~g~p~~~aaa~a~L~~---l~~---~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~ 393 (441)
T PRK05769 320 GGNPVAAAAALATLEE---LEE---GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDK 393 (441)
T ss_pred CcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHH
Confidence 3467777666666542 221 23344445555555555443 3322233335677777743211111112235
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+...++ ++||.+.+. +...+|++... ++++++++++++|.+++.+
T Consensus 394 ~~~~~~-~~Gil~~~~------~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 394 VLYEAF-KRGLLLLGA------GKSAIRIIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred HHHHHH-hCCcEEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 566666 469998753 23579999876 5999999999999998865
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=139.26 Aligned_cols=313 Identities=12% Similarity=0.086 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-C-CcEEE--eCChhHHHHHHHHHhc--------CCC-----CeEEEeCCCCcChHH
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-P-DRIVM--SGGATGAHETVAFCLA--------DPG-----DAFLVPTPYYPGFDR 158 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~-~~i~i--t~G~~~al~~~~~~l~--------~~g-----d~Vlv~~P~y~~~~~ 158 (483)
..++.+.+-+|+.+..| ++ + +++.. |+|+|+++..++.+.. ..| ..|+++.-.|.++..
T Consensus 78 ~~~le~~~~~~la~llg----~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~k 153 (431)
T TIGR01788 78 TAEIENRCVNMLADLWH----APAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEK 153 (431)
T ss_pred HHHHHHHHHHHHHHHhC----CCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHH
Confidence 34777777777777766 34 2 45544 8999999998876542 111 368889999999999
Q ss_pred HHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc------C
Q 011570 159 DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK------N 232 (483)
Q Consensus 159 ~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~------~ 232 (483)
.++.+ |+++..+|+++ +++.+|++.|+++|.+ ++.+|+++..||.||.+-| +++|+++|+++ |
T Consensus 154 a~~~l-g~~v~~i~~d~-~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idp---i~~I~~i~~~~~~~~~~~ 222 (431)
T TIGR01788 154 FARYF-DVELREVPMDP-GRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYED---VKALNDALDEYNAKTGWD 222 (431)
T ss_pred HHHHc-CceeEEEecCC-CceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCC---HHHHHHHHHHHHhhhCCC
Confidence 88876 99999999876 3468999999999975 6788999999999999999 77788888888 9
Q ss_pred cEEEEccccccCc--cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHHHhhhcC-
Q 011570 233 IHLVCDEIYAATV--FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCARKMSSFG- 308 (483)
Q Consensus 233 ~~iI~Deay~~~~--~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~~~~~~~- 308 (483)
+++++|.+|+... |........+. . .....+.-|.+|.+ +....+|.++..++. +...+.....+.
T Consensus 223 ~~~HvDaaq~g~~~p~~~~~~~~~~~-~--------~~~DSis~s~HK~~-~~P~g~G~l~~r~~~~l~~~~~~~~~yl~ 292 (431)
T TIGR01788 223 IPIHVDAASGGFIAPFVYPDLEWDFR-L--------PRVKSINVSGHKYG-LVYPGVGWVIWRDEEALPEELIFHVNYLG 292 (431)
T ss_pred ceEEEecccHHHHHHHhCCCchhhcC-C--------CCceEEEECchhcc-CCCCCcEEEEEeChHHcchhheecccccC
Confidence 9999999998542 11101101111 1 12233456999975 233448988885542 222221110110
Q ss_pred --------CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC--CceEEEeeecCchhhcc
Q 011570 309 --------LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS--NAGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 309 --------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~--~~g~f~~~~l~~~~~~~ 377 (483)
..+...-.++..++.-..+-..-+++..++..+..+++.+.|++. ++++..+ ..+ .+.++++...+ .
T Consensus 293 ~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~-iV~Fr~~~~~~-~ 370 (431)
T TIGR01788 293 GDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIP-LVAFKLKDDAD-P 370 (431)
T ss_pred CCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCce-EEEEEeCCCCC-C
Confidence 011111112222221000001223555666777888899999887 5887754 444 55566653110 0
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFH-CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~-~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.. +..++.+.|. +.|+.+....... ..+.-++|+++.. .+.+.++.+++.|++++...
T Consensus 371 ~~-~~~~l~~~L~-~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 371 GY-TLYDLSHRLR-ERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred Cc-CHHHHHHHHH-HCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 11 1235666665 5698653322111 1122369999953 58899999999999888654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-13 Score=137.41 Aligned_cols=305 Identities=11% Similarity=0.075 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-----CCCeEEEeCCCCcChHHHHhhhcCcEEE--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-----PGDAFLVPTPYYPGFDRDLRWRTGVQLV-- 169 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-----~gd~Vlv~~P~y~~~~~~~~~~~G~~~~-- 169 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++..... ....|+....+|.+.........+-...
T Consensus 116 ~~~~~~lAe~L~~~~p----~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~ 191 (442)
T TIGR03372 116 DPLRALLAKTLAALTP----GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRK 191 (442)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCC
Confidence 3455556666554322 1236799999999999999875421 2367899998887765433322121100
Q ss_pred -EeecCCCCC--cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 170 -PVVCDSSND--FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 170 -~v~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
..|+.+.-. -..|.+.+++.+++....+.++.+|++..-..-.|.+. +++.++++.++|++||+++|.||++.+
T Consensus 192 ~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG-- 269 (442)
T TIGR03372 192 PFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTG-- 269 (442)
T ss_pred CCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccC--
Confidence 011110000 01257778777754333334566666654455567755 678899999999999999999999976
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh----hhcCCCChHHHHHHHH
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM----SSFGLVSSQTQHLIAT 320 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~----~~~~~~s~~~q~~~~~ 320 (483)
|+....+.....+.- .+| |+ +++|.+| .| +.+|.+++. +++.+.+... .+.+..++++.+++.+
T Consensus 270 ~GRtG~~~a~e~~gv-----~PD--iv--t~gK~lg-~G~~Pigavv~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a 338 (442)
T TIGR03372 270 MGRTGKMFACEHEGV-----QPD--IL--CLAKALG-GGVMPIGATIAT-EAVFSVLFDNPFLHTTTFGGNPLACAAALA 338 (442)
T ss_pred CCccccchhhhhcCC-----CCC--ee--eehhhhc-CCcccceEEEec-HHHHHhhhccCccccCCCCCCHHHHHHHHH
Confidence 433122222222211 223 32 5899998 88 699999984 5565554211 1112246666666555
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----C-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----G-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
.|+-- ++ +...++.++.-+++.+.|+++ + .-.....-|+++.+.+... .....+...+++ +||
T Consensus 339 ~L~~i---~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~------~~~~~i~~~l~~-~Gv 406 (442)
T TIGR03372 339 TINEL---LE--KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDN------EIGYAFAKELFQ-QNI 406 (442)
T ss_pred HHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCCh------HHHHHHHHHHHH-CCc
Confidence 55321 10 011122233333344444332 2 1112224467888888642 112356777775 699
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
++.+.. + ..+.+||.... ++++++++++++|.+++
T Consensus 407 l~~~~~-~---~~~~lr~~Ppl~~t~~~id~~~~~l~~~~ 442 (442)
T TIGR03372 407 LVAGTL-N---NAKSIRIEPPLTITIEQCALVIKAAKDAL 442 (442)
T ss_pred EEeecC-C---CCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 987532 1 23579999976 59999999999998753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-13 Score=135.53 Aligned_cols=286 Identities=12% Similarity=0.088 Sum_probs=185.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcE--EEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRI--VMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i--~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
..++.+.+.+++.+.+| .+++++ ++|+|+|+++...+.+.. .++..|+++.-.|.++..+++.+ |.++..+
T Consensus 64 a~~~e~~v~~~ia~llg----~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l-g~~~~~V 138 (374)
T PLN03032 64 SRQFEVGVLDWFARLWE----LEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMEAVKV 138 (374)
T ss_pred HHHHHHHHHHHHHHHhC----CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc-CCCCeEe
Confidence 47777777777777766 567776 999999999988876643 24568899999999999888876 8888888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC-----cEEEEccccccCcc
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN-----IHLVCDEIYAATVF 246 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~-----~~iI~Deay~~~~~ 246 (483)
|++. ++.+|+++|+++|++. ..++.+|+++..+|+||.+-+ +++|+++|+++| +|+++|.+|+....
T Consensus 139 ~~d~--~g~id~~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~ 210 (374)
T PLN03032 139 PTLP--SGEIDYDDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMM 210 (374)
T ss_pred eeCC--CCcCcHHHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhh
Confidence 8875 4589999999999752 124667888889999999988 777788888886 59999999976421
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-------CCCCh-----HH
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-------GLVSS-----QT 314 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-------~~~s~-----~~ 314 (483)
.-... .+...+. ..-..+.-|.+|..| ....+|.++..++.+ ..+.....+ ...+. +.
T Consensus 211 p~~~~-~~~~~~~-------~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~~l~ 280 (374)
T PLN03032 211 PFVSR-APEVTFR-------KPIGSVSVSGHKFLG-CPMPCGVALTRKKHV-KALSQNVEYLNSRDATIMGSRNGHAPLY 280 (374)
T ss_pred hccCC-CcccCCC-------cCCcEEEECcccccC-CCcCeEEEEEEchhh-HhhccCCcccCCCCCcccCCCchHHHHH
Confidence 10000 0001111 112234569999876 456689999865433 322211111 01121 12
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhc
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~ 393 (483)
..+....+...+ +.+..+...+..+++.+.|++.++++. .|.. +.+.++-+.. + .+.+
T Consensus 281 ~w~~l~~~G~~g-----~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p~~-~~V~f~~~~~----------~---~~~~-- 339 (374)
T PLN03032 281 LWYTLRRKGYRG-----IKRDVQHCMRNAHYLKDRLTEAGLTCRLNELS-STVVFERPMD----------E---AFIK-- 339 (374)
T ss_pred HHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEECCCc-eEEEEcCCCc----------H---hHhh--
Confidence 222223333332 355566677788889999988888754 4554 4555554420 1 1222
Q ss_pred CeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 394 KLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 394 gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
|..+.+- .+++|+++.. .+.+.++++++.|++
T Consensus 340 ~w~l~~~-------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 340 KWQLACE-------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred eeeeccc-------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 4444421 2479999975 577888988888764
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-13 Score=137.54 Aligned_cols=309 Identities=12% Similarity=0.090 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---C-CC-CeEEEeCCCCcChHHHHhhhcCcEEEE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---D-PG-DAFLVPTPYYPGFDRDLRWRTGVQLVP- 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~-~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~- 170 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++.... . +| ..|+....+|.+.........|.....
T Consensus 123 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~ 198 (459)
T PRK11522 123 DPLRAMLAKTLAALTP----GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRK 198 (459)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCccccc
Confidence 4555666666654321 234689999999999999987542 1 23 468888888877654332221211111
Q ss_pred --eecCCC---CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 171 --VVCDSS---NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 171 --v~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
.|..+. -.| .|.+.+++.++.....+.++.+|++.....-.|.+. |.+.++++.++|++||+++|.||++.+
T Consensus 199 ~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG- 276 (459)
T PRK11522 199 PFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTG- 276 (459)
T ss_pred CCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceec-
Confidence 111000 011 167888888865433334566666654455667754 677899999999999999999999976
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh----hhcCCCChHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM----SSFGLVSSQTQHLIA 319 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~----~~~~~~s~~~q~~~~ 319 (483)
|+....+.....+.- .+| ++ +++|.+| .| +.+|.+++. +++.+.+... ...+..++++.+++.
T Consensus 277 -~GRtG~~~a~e~~gv-----~PD--iv--t~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~T~~gnp~~~Aaal 344 (459)
T PRK11522 277 -MGRTGKMFACEHENV-----QPD--IL--CLAKALG-GGVMPIGATIAT-EEVFSVLFDNPFLHTTTFGGNPLACAAAL 344 (459)
T ss_pred -CCccchhhhhhccCC-----CCC--EE--Eechhhh-CCCccceeEEEc-HHHHHHhccCCcccCCCCCCCHHHHHHHH
Confidence 332122212211110 223 33 8899998 78 699999984 5555543211 111223666655554
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----C-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----G-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~g 394 (483)
+.|+--. + +...+++++.-+++.+.|+++ + +......-|.++.+.+... .....+...+++ +|
T Consensus 345 a~L~~i~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~------~~~~~i~~~l~~-~G 412 (459)
T PRK11522 345 ATINVLL---E--QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDN------EIGYNFASEMFR-QR 412 (459)
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCc------hHHHHHHHHHHH-CC
Confidence 4443211 0 112233334444455544443 2 1111223467888887642 112356677775 69
Q ss_pred eEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 395 LNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 395 V~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
|.+.+.. .....+|+..+. ++++++++++++|.+++++..+
T Consensus 413 vl~~~~~----~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 413 VLVAGTL----NNAKTIRIEPPLTLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred eEEEecC----CCCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9987542 134689999976 5999999999999999977653
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=146.87 Aligned_cols=178 Identities=15% Similarity=0.172 Sum_probs=128.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+..+..|+.++ .....+++||+|.++.+++.+++.+||+|+++..||-+....+... |++.+.++..-
T Consensus 207 I~eAq~~aA~~fg---------A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~-ga~Pvyl~P~~ 276 (755)
T PRK15029 207 FGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILT-GAKPVYMVPSR 276 (755)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 4566666666665 4567999999999999999999999999999999999999988875 99999886432
Q ss_pred CCCc----ccC-----HHHHHHHHHHHHh----cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 176 SNDF----KVT-----MEALEAAYEKAQE----SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 176 ~~~~----~~d-----~~~l~~~i~~~~~----~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
..+ .++ ++.++++++++.. .+++++++++++|+. -|.+.+ +++|++.|+++++.|++||||+
T Consensus 277 -~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhG 351 (755)
T PRK15029 277 -NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECccc
Confidence 122 233 8899999976421 223556999999987 699988 8888999999999999999997
Q ss_pred cCc-cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEe
Q 011570 243 ATV-FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYS 292 (483)
Q Consensus 243 ~~~-~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~ 292 (483)
... |. +.++....+...........++++.|.+|++ +++.-| ++..
T Consensus 352 ah~~F~--~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 352 GYARFN--PIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred cccccC--ccccccccccccccccCCCceEEEEchhhcc--cchhhhhhhee
Confidence 652 22 2222111110000000112348899999997 677777 5555
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-13 Score=132.73 Aligned_cols=351 Identities=16% Similarity=0.203 Sum_probs=217.7
Q ss_pred Ccccccchhhhh-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
-+|||=+..-.- +.+...+++... --.|...+....|.+.+++.++ .+.+++|
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~~G----------------DD~Y~gdpSv~~Lee~vael~G----------~E~alpt 95 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMMRG----------------DEAYSGSRSYYALAESVKNIFG----------YQYTIPT 95 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHHcC----------------CcccccCchHHHHHHHHHHHhC----------CceEEEC
Confidence 356777665442 444455555431 1247777778999999999987 3467888
Q ss_pred CChhHHHHHHHHHhcC-CCCeEEEeCC-------C-CcChHHHHhhhcCcEEEEeecC--------CCCCcccCHHHHHH
Q 011570 126 GGATGAHETVAFCLAD-PGDAFLVPTP-------Y-YPGFDRDLRWRTGVQLVPVVCD--------SSNDFKVTMEALEA 188 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~-~gd~Vlv~~P-------~-y~~~~~~~~~~~G~~~~~v~~~--------~~~~~~~d~~~l~~ 188 (483)
..+..+-.+++..+++ |||.+++..+ . |......+.. .|+.++.++.+ ...+..+|++.|++
T Consensus 96 hqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l-~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~ 174 (467)
T TIGR02617 96 HQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI-NGCTARNVYTKEAFDTGVRYDFKGNFDLEGLER 174 (467)
T ss_pred CCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHH-cCceeecccchhhcccccCCCCCCCcCHHHHHH
Confidence 8889999999999998 7887776554 1 2212233444 48888776432 12234789999999
Q ss_pred HHHHHHhcCCceeEEEEeCCCC-CCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-c-cC--CC--CCcchHHHhhhh
Q 011570 189 AYEKAQESNIRIKGVLITNPSN-PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-V-FT--KE--SSFVSIAEIIDQ 261 (483)
Q Consensus 189 ~i~~~~~~~~~~~~i~l~~P~N-PtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~-~~--~~--~~~~s~~~l~~~ 261 (483)
+|++...+ ++..+..+--+| --|+++|.+.++++.++|++||+.++.|.+-... . |- .+ ..-.++..+..+
T Consensus 175 ~I~~~g~~--~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE 252 (467)
T TIGR02617 175 GIEEVGPN--NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRE 252 (467)
T ss_pred HHhhcCCC--CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHH
Confidence 99863211 222222221123 3588999999999999999999999999876321 1 10 00 111455555422
Q ss_pred ccccCCCeEEEEecCccccCCC-CceEEEEEecChHHH---HHHHH-------hhhcCCCChHHHHHHHHhcCChhHHHH
Q 011570 262 DIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVV---SCARK-------MSSFGLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 262 ~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~---~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
+-. ..| .+.-|+||.+|+| | |+++++++.+. +..+. +.+++..+.-...+++.-|.+. .-.+
T Consensus 253 ~~~-~aD--svt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~-~~~~ 325 (467)
T TIGR02617 253 TYK-YAD--MLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG-MNLD 325 (467)
T ss_pred hhc-cCC--EEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc-ccHH
Confidence 200 123 3345999998866 4 57777666333 33322 2233455555555665445442 1133
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch---hhccChHHHHHHHHHHHHhcCeE-eeCCCCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL---LKEQTYEAEMALWRVIINEVKLN-VSPGSSFHCP 406 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~---~~~~~~~~~~~~~~~Ll~~~gV~-v~pg~~f~~~ 406 (483)
++..+. ...++|.+.|.+.|+++.. .||-=++++.... +....+.. ..++..|..+.||. +--|+.....
T Consensus 326 yl~~ri----~qv~yl~~~L~~~Gvpi~~-~Gghav~iDa~~~lphip~~~fpa-~al~~~ly~~~GiR~~e~G~~~~~r 399 (467)
T TIGR02617 326 WLAYRI----NQVQYLVNGLEEIGVVCQQ-AGGHAAFVDAGKLLPHIPADQFPA-HALACELYKVAGIRAVEIGSLLLGR 399 (467)
T ss_pred HHHHHH----HHHHHHHHHHHhCCCcEEe-cCccEEEEehhhhCCCCChhhCcH-HHHHHHHHHHcCcceEeecceeccc
Confidence 444443 3347888999999999988 7777777765432 22233333 37788888899985 4445432111
Q ss_pred C----------CCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhh
Q 011570 407 N----------PGWFRVCFAN--MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 407 ~----------~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
. -..+|+++.. .|.++++...++|..+.++...
T Consensus 400 d~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~ 444 (467)
T TIGR02617 400 DPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPN 444 (467)
T ss_pred CCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhh
Confidence 0 1359999965 3999999999999987766543
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-13 Score=137.05 Aligned_cols=285 Identities=14% Similarity=0.130 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHhhhCCCCCc-CCCcEEEeCC-hhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 98 EFRNAVAKFMGKVRGNRITF-DPDRIVMSGG-ATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~G-~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
++-+.+.+.+...++ . +..+|+++.| +|.+++.++..++.+||++++...+..+ +...++.. |. +..+..
T Consensus 37 ~~~~~~~~~l~~l~~----~~~~~~v~~~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~-g~-~~~~~~ 110 (349)
T TIGR01364 37 AVANEAESDLRELLN----IPDNYEVLFLQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKY-GV-VNVVAS 110 (349)
T ss_pred HHHHHHHHHHHHHhC----CCCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CC-cEEEec
Confidence 444444444444443 2 2356888877 9999999999999999998888766533 23445554 88 666665
Q ss_pred CCCCCc--ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 174 DSSNDF--KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 174 ~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++..+| .++++.++. .+++++|.+++-.|.||...+ ++++.+++++++|.+.+ ++. .+
T Consensus 111 ~~~~~~~~~~~~~~~~~--------~~~~~~v~~th~ETstGv~~~--------~l~~~~~~l~iVDavss---~g~-~~ 170 (349)
T TIGR01364 111 GKEGNYTKIPDPSTWEI--------SEDAAYVHYCANETIHGVEFR--------ELPDVKNAPLVADMSSN---ILS-RP 170 (349)
T ss_pred cccCCCCCCCCHHhcCC--------CCCCCEEEEcCCCCcccEecc--------eecccCCCeEEEEcccc---ccC-cc
Confidence 432222 345555442 137899999999999999875 45556799999999986 333 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH---------HH----hhhcCCCChHHHHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA---------RK----MSSFGLVSSQTQHLI 318 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~---------~~----~~~~~~~s~~~q~~~ 318 (483)
..+..+ + +++.|..|.+|.+| +|+++.+++.+.... .. ...+++.+.....++
T Consensus 171 -id~~~~---------d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al 236 (349)
T TIGR01364 171 -IDVSKF---------G--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVS 236 (349)
T ss_pred -CCHHHc---------c--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHH
Confidence 333322 3 77889999999777 788888544432210 00 111233344444444
Q ss_pred HHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcC-Cceeec--C--CceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 319 ATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQV-GIGCLK--S--NAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 319 ~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~--~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
.++|+ ++.+. ++...++.++..+++.+.|+++ |+.... + ..+..+.+.++.. .+ ..++...+ .
T Consensus 237 ~~al~---~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~----~~--~~~~~~~~-~ 306 (349)
T TIGR01364 237 GLVFK---WLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNE----EL--EKRFLKEA-E 306 (349)
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCCh----hH--hHHHHHHH-H
Confidence 44443 22222 5677777888889999999998 563331 1 2223455566532 11 12444444 4
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+.|+.+.+|.. ..+.+|+|+.. .+.++++.++++|++++++
T Consensus 307 ~~Gi~~~~~~~----~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 307 ERGLVSLKGHR----SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred HCCCcccCCcc----ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 57998777754 23689999966 5999999999999987765
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=147.76 Aligned_cols=178 Identities=22% Similarity=0.312 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+..+..|+.++ .....+++||+|.++.+++.++++|||.|+++..||-+....+... |+++++++..
T Consensus 68 I~eAe~~aA~~fG---------Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~-ga~Pvyi~p~- 136 (417)
T PF01276_consen 68 IKEAEELAARAFG---------ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILS-GAIPVYIPPE- 136 (417)
T ss_dssp HHHHHHHHHHHHT---------ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHH-TEEEEEEEEE-
T ss_pred HHHHHHHHHHhcC---------CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHc-CCeEEEecCC-
Confidence 5677777777776 3457899999999999999999999999999999999999988886 9999988865
Q ss_pred CCCc----ccCH-----HHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-
Q 011570 176 SNDF----KVTM-----EALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV- 245 (483)
Q Consensus 176 ~~~~----~~d~-----~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~- 245 (483)
...+ .+++ +.++++|++.... +.+++|++++|+. -|.+++ +++|+++|+++++.|++||||+...
T Consensus 137 ~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~ 211 (417)
T PF01276_consen 137 DNEYGIIGGISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFG 211 (417)
T ss_dssp E-TTS-BEEB-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-TTGG
T ss_pred ccccCCccCCChhhhhHHHHHHHHHhCccc-cCceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEcccccccc
Confidence 2222 3455 8999998874221 1145599999987 699988 8999999999999999999997652
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEecCh
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYSYND 295 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~~~~ 295 (483)
|.. -+.+...+..+ ......++++.|.+|++ +++.-+ ++....+
T Consensus 212 F~~--lp~~a~~~gad--~~~~~~~~vvqS~HKtL--~altQts~lh~~~~ 256 (417)
T PF01276_consen 212 FHP--LPRSALALGAD--RPNDPGIIVVQSTHKTL--PALTQTSMLHVKGD 256 (417)
T ss_dssp CSG--GGTTCSSTTSS---CTSBEEEEEEEHHHHS--SS-TT-EEEEEETC
T ss_pred CCC--CccchhhccCc--cccccceeeeechhhcc--cccccceEEEecCC
Confidence 221 11111111110 11334678999999997 666655 6666444
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=141.09 Aligned_cols=281 Identities=14% Similarity=0.172 Sum_probs=174.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC-hhHHHHHHHHHhcC---CCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG-ATGAHETVAFCLAD---PGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G-~~~al~~~~~~l~~---~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
+.+.|+.++++++. -++++|++|+| +|++++.++..++. +||.|++ .|........++.. |.++..+
T Consensus 46 ~~~~r~~l~~l~~~-------~~~~~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~-g~~~~~~~~~a~~~-g~~~~~~ 116 (355)
T cd00611 46 VNEAESDLRELLNI-------PDNYKVLFLQGGATGQFAAVPLNLLGDKGTADYVVT-GAWSAKAAKEAKRY-GGVVVIV 116 (355)
T ss_pred HHHHHHHHHHHhCC-------CCCceEEEEcCCchHHHHHHHHhcCCCCCeEEEEEC-CHHHHHHHHHHHhc-CCCcEEE
Confidence 45778888888761 14678999988 99999999999987 5555544 22222222245654 9888888
Q ss_pred ecCCCCCcccC-HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 172 VCDSSNDFKVT-MEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 172 ~~~~~~~~~~d-~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+.++++++. + ++..+..+. +++++|.+++-+|.||..++ ++++.+|+++++|.+.. ++. .
T Consensus 117 ~~~~~g~~~-~~~~~~~~~~~------~~~~lV~~~h~~t~tG~~~~--------~i~~~~g~~~~VDa~qs---~g~-~ 177 (355)
T cd00611 117 AAKEEGKYT-KIPDVETWDLA------PDAAYVHYCSNETIHGVEFD--------EVPDTGGVPLVADMSSN---ILS-R 177 (355)
T ss_pred ecccccCCC-CCCCHhhcCCC------CCCCEEEEeCCcccccEEcc--------eecccCCCeEEEEcccc---ccC-C
Confidence 876443331 2 222222222 47899999999999999754 23345899999999986 333 2
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--------h------hhcCCCChHHHH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--------M------SSFGLVSSQTQH 316 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--------~------~~~~~~s~~~q~ 316 (483)
+ .++..+ + +.+.|..|.+|.+| +|+++++++.+.+ +.. . ..+++.+.....
T Consensus 178 ~-idv~~~---------~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~ 242 (355)
T cd00611 178 P-IDVSKF---------G--VIYAGAQKNLGPAG--VTVVIVRKDLLGK-ARKITPSMLNYKTHADNNSLYNTPPTFAIY 242 (355)
T ss_pred C-CCHHHh---------C--EEEeecccccCCCc--eEEEEECHHHHhh-cccCCCCcccHHHHHhcCCCCCCChHHHHH
Confidence 2 343332 3 34566899999777 7888885443322 111 0 012333333444
Q ss_pred HHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcC-Cce-ee-c--CCceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQV-GIG-CL-K--SNAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~-gi~-~~-~--~~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
++.++++ ++.+. ++...++.++..+++.+.|+++ |+. .. . ...+..+.+.++.. ....++...+
T Consensus 243 ~L~aal~---~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~------~l~~~~~~~~ 313 (355)
T cd00611 243 MMGLVLK---WLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKE------ELEKEFLKEA 313 (355)
T ss_pred HHHHHHH---HHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCCh------hhhHHHHHHH
Confidence 4444443 23322 5666777888889999999988 752 21 1 12323455566542 0011333333
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
.+.|+.+.+|.. ..+.+|+|+.. .+.++++.+++.|+++
T Consensus 314 -~r~G~~~~~~~~----~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 314 -EAAGMIGLKGHR----SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred -HHCCCcccCCCc----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 356997665543 23689999976 5999999999999874
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.6e-13 Score=130.16 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~ 173 (483)
..|.+.+++..+ ..++++++++..|+..++..|+.+|++|++...+|.+....++.. +|++...+.+
T Consensus 80 ~~le~~iaal~g----------a~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 80 DVLESGIAALEG----------AAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred HHHHHHHHHHhC----------CceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 455555555543 456888999999999999999999999999999999877765543 4777777664
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
+ +++.+++++.+ ++++|++.+|.||+..+.+ +++|.++|+++|++||+|+.++...+..
T Consensus 150 ~-------~~~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~----- 208 (409)
T KOG0053|consen 150 D-------DLKKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD----- 208 (409)
T ss_pred h-------hHHHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC-----
Confidence 3 56777777764 7999999999999999998 7788888889999999999987642222
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecChHHHHHHHHhhh-c-CCCChHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYNDQVVSCARKMSS-F-GLVSSQT 314 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~ 314 (483)
...+ +..|++.|.+|.+|-. -+=.|.++....++...+..... . +..+++.
T Consensus 209 -pL~l---------GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~ 262 (409)
T KOG0053|consen 209 -PLPL---------GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFD 262 (409)
T ss_pred -hhhc---------CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHH
Confidence 2222 4558899999998632 24456777754666555544332 2 3345443
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-12 Score=133.10 Aligned_cols=315 Identities=10% Similarity=0.048 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc---------
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV--------- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~--------- 166 (483)
+....+|+.+.+..+ ...+.+++++++++|+..++.... ....+|+....+|.+.........|.
T Consensus 96 ~~~~~lae~L~~~~p----~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 171 (457)
T PRK05639 96 ERAIRVAEKLAEISP----IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFS 171 (457)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCC
Confidence 344455555554321 223689999999999999887642 23357888888887754332221121
Q ss_pred ----EEEEeecCCCC--Ccc----cCHHH--------HHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHH
Q 011570 167 ----QLVPVVCDSSN--DFK----VTMEA--------LEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSF 227 (483)
Q Consensus 167 ----~~~~v~~~~~~--~~~----~d~~~--------l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~ 227 (483)
.++.+|.+... .|. -+.+. +++.+......+.++.+|++.-.....|.+ .+.+.+++|.++
T Consensus 172 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~l 251 (457)
T PRK05639 172 PLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKL 251 (457)
T ss_pred CCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHH
Confidence 12333332110 010 02222 333322111112467666665445556774 468889999999
Q ss_pred HhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hh
Q 011570 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SS 306 (483)
Q Consensus 228 a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~ 306 (483)
|++||+++|.||++.+ |+....+.....+.- .+| ++ +|+|.+| .|+.+|.+++ .+.+.+..... ..
T Consensus 252 c~~~g~llI~DEv~tG--~GrtG~~~a~~~~gv-----~PD--iv--~~gK~l~-gG~pi~av~~-~~~i~~~~~~~~~~ 318 (457)
T PRK05639 252 LDEHGILLVMDEVQTG--IGRTGKWFASEWFEV-----KPD--LI--IFGKGVA-SGMGLSGVIG-RKELMDLTSGSALL 318 (457)
T ss_pred HHHcCCEEEEechhhc--cCcCchHHHHHhcCC-----CCC--EE--Eechhhc-CCCcceeEEe-hHHHHhhcCCCccc
Confidence 9999999999999986 432122112111111 223 33 3799998 8999999999 45555532111 11
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccChHHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
....++++.+++.+.|+--. + +...+..++.-++|.+.|++ .++......-|+++.+.+............
T Consensus 319 T~~g~p~~~aaa~a~l~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~ 393 (457)
T PRK05639 319 TPAANPVISAAAEATLEIIE--E---ENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELT 393 (457)
T ss_pred CCCcCHHHHHHHHHHHHHHH--H---ccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHH
Confidence 12245555555444443211 0 11122223333444444443 343333344467777776321111111122
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..+...+++ +||.+.+.. ...+.+|+.... ++++++++++++|.+++++..+
T Consensus 394 ~~~~~~~~~-~Gv~~~~~g----~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~ 446 (457)
T PRK05639 394 GKICWRAFE-LGLILPSYG----MFGNVIRITPPLVITKEIAEKGLEIMERAIKDALA 446 (457)
T ss_pred HHHHHHHHh-CCeEEeecC----CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 356666664 699987642 124689999977 5999999999999999987644
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=132.57 Aligned_cols=314 Identities=11% Similarity=0.049 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCc----
Q 011570 99 FRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGV---- 166 (483)
Q Consensus 99 Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~---- 166 (483)
....+|+.+.+..+ ..+.+++++++++++..++.... .+| .+|+....+|.+.........|.
T Consensus 90 ~~~~lae~l~~~~~-----~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~ 164 (451)
T PRK07678 90 PAIKLAEKLNEWLG-----GEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRK 164 (451)
T ss_pred HHHHHHHHHHHhCC-----CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccc
Confidence 34455555554322 23589999999999998886642 123 57888888887754433221121
Q ss_pred --------EEEEeecCCCCC--cc-----cC---HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHH
Q 011570 167 --------QLVPVVCDSSND--FK-----VT---MEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSF 227 (483)
Q Consensus 167 --------~~~~v~~~~~~~--~~-----~d---~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~ 227 (483)
.+..+|.++... |. -+ ++.+++.+.. ....++.+|++.....-.|.+ .+.+.++++.++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~l 242 (451)
T PRK07678 165 YKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTW--ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEI 242 (451)
T ss_pred cccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHh--cCCCceEEEEEccccCCCCcccCCHHHHHHHHHH
Confidence 112222111000 10 01 1224444532 112356666665444445665 477789999999
Q ss_pred HhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--
Q 011570 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-- 304 (483)
Q Consensus 228 a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-- 304 (483)
|++||+++|.||+..++...+ . +.....+.- .+| ++ +++|.+| .| +.+|.+++ .+++.+.+...
T Consensus 243 c~~~g~llI~DEV~tGfGRtG-~-~~~~~~~gv-----~PD--iv--t~gK~lg-gG~~Pi~av~~-~~~i~~~~~~~~~ 309 (451)
T PRK07678 243 CQKHGALLISDEVICGFGRTG-K-AFGFMNYGV-----KPD--II--TMAKGIT-SAYLPLSATAV-KKEIYEAFKGKGE 309 (451)
T ss_pred HHHcCCEEEEeehhhcCCcCc-h-hHHHHhcCC-----CCC--EE--Eeecccc-cCCcceeEEEE-cHHHHHHHhccCc
Confidence 999999999999997743332 2 222222211 223 33 7799998 77 79999999 56666655321
Q ss_pred ------hhcCCCChHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh
Q 011570 305 ------SSFGLVSSQTQHLIATMLSD---DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK 375 (483)
Q Consensus 305 ------~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~ 375 (483)
...+..++++.+++.+.|+- ++. .++..+.-+.+ ++.+.+.+.++++......-|.++.+.+.....
T Consensus 310 ~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~-~~~~~~~g~~l---~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~ 385 (451)
T PRK07678 310 YEHFRHVNTFGGNPAACALALKNLEIMENENL-IERSAQLGELL---LEQLKEELGEHPLVGDIRGKGLLVGIELVNDKE 385 (451)
T ss_pred ccccccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHH---HHHHHHHHhcCCCEEEEEeeceEEEEEEecCCc
Confidence 11123466666665555532 221 11122221222 222333334445433333445666677642111
Q ss_pred cc---ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 376 EQ---TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 376 ~~---~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.. .......+...+++ +||.+.+.....+...+.+||+... ++++++++++++|.+++++.
T Consensus 386 ~~~~~~~~~a~~i~~~l~~-~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 386 TKEPADNDKVASVVAACKE-KGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred ccCcCchHHHHHHHHHHHH-CCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 00 01112356666664 6999876321111223679999875 59999999999999998754
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=137.38 Aligned_cols=284 Identities=19% Similarity=0.254 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
..++.++++++++ ..+++.+++++.||.+++.++ +++||+|+++.-+|......+... |.+++.++++
T Consensus 27 ~~~fE~~~a~~~g----------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~-G~~pv~~Di~ 95 (363)
T PF01041_consen 27 VEEFEKEFAEYFG----------VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWA-GAEPVFVDID 95 (363)
T ss_dssp HHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHT-T-EEEEE-BE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHh-ccEEEEEecc
Confidence 5788999999876 578999999999999999997 478999999999999999998886 9999999998
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+ .++.+|++.+++++.+ ++|+|++++. -|...+ +.+|.++|+++|++||+|.+++....-. .. .
T Consensus 96 ~-~~~~id~~~~~~~i~~------~t~ai~~~h~---~G~~~d---~~~i~~~~~~~~i~lIeD~a~a~g~~~~-g~--~ 159 (363)
T PF01041_consen 96 P-ETLNIDPEALEKAITP------KTKAILVVHL---FGNPAD---MDAIRAIARKHGIPLIEDAAQAFGARYK-GR--P 159 (363)
T ss_dssp T-TTSSB-HHHHHHHHHT------TEEEEEEE-G---GGB------HHHHHHHHHHTT-EEEEE-TTTTT-EET-TE--E
T ss_pred C-CcCCcCHHHHHHHhcc------CccEEEEecC---CCCccc---HHHHHHHHHHcCCcEEEccccccCceeC-CE--e
Confidence 5 4789999999999985 8899998765 344444 8999999999999999999997532111 11 1
Q ss_pred HHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhcCC-------------------CChH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL-------------------VSSQ 313 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~-------------------~s~~ 313 (483)
+- ... .+.+.|| +|.+... --|.++++++.+.+.++.++..+. ++.
T Consensus 160 ~G---------~~g-d~~~fSf~~~K~i~~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~- 226 (363)
T PF01041_consen 160 VG---------SFG-DIAIFSFHPTKIITTG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSE- 226 (363)
T ss_dssp TT---------SSS-SEEEEESSTTSSS-SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BH-
T ss_pred cc---------CCC-CceEecCCCCCCCcCC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHH-
Confidence 11 112 3456677 6887422 358999988888888776544321 121
Q ss_pred HHHHHH-HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec--CCc---eE-EEeeecCchhhccChHHHHHH
Q 011570 314 TQHLIA-TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK--SNA---GL-FLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 314 ~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~~~---g~-f~~~~l~~~~~~~~~~~~~~~ 385 (483)
.|+++. .-|.. +++..+.-+++.+++.+.|... ++...+ +.. .+ .+.+.++.... ....++
T Consensus 227 ~~AAigl~QL~~-------L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~----~~rd~l 295 (363)
T PF01041_consen 227 LQAAIGLAQLKR-------LDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL----ADRDEL 295 (363)
T ss_dssp HHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC----STHHHH
T ss_pred HHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc----chHHHH
Confidence 222221 21221 2333333355667777788776 443322 221 11 22333332110 112366
Q ss_pred HHHHHHhcCeEeeCCCC-CCC------C-----C----------CCEEEEEecc-CCHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSS-FHC------P-----N----------PGWFRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~-f~~------~-----~----------~~~iRis~~~-~~~e~l~~~l~~L~ 431 (483)
.+.|.+ .||.+.+... .-. . . ...+-|-+.. .++++++..++.|+
T Consensus 296 ~~~L~~-~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 296 VEALRA-RGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHHHH-TTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-CCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 666665 5999887541 000 0 0 0135555533 58888888887764
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-12 Score=133.67 Aligned_cols=319 Identities=13% Similarity=0.126 Sum_probs=190.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCC--------Cc-CCCcEEEeCChhHHHHHHHHHh----cC---------------
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRI--------TF-DPDRIVMSGGATGAHETVAFCL----AD--------------- 141 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~--------~~-~~~~i~it~G~~~al~~~~~~l----~~--------------- 141 (483)
|...+...++.+.+.+|+.+..+..- .. +...-++|+|+|+++..++.+. +.
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~ 200 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA 200 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 33445578999999999988753100 00 1123577899998888776542 11
Q ss_pred -------CCCeEEEeCCCCcChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCC
Q 011570 142 -------PGDAFLVPTPYYPGFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211 (483)
Q Consensus 142 -------~gd~Vlv~~P~y~~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NP 211 (483)
++..|++..-.|.+...++..+ |. +++.+|+++ ++.+|++.|+++|++..+++.++-+|+-+..++.
T Consensus 201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~l-glg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~ 277 (522)
T TIGR03799 201 ALKHYGYDGLAILVSERGHYSLGKAADVL-GIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE 277 (522)
T ss_pred hhhhccCCceEEEECCCchHHHHHHHHHc-CCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence 2346888888899888888776 87 788999875 4689999999999876555444444444456779
Q ss_pred CcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEE
Q 011570 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIY 291 (483)
Q Consensus 212 tG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li 291 (483)
||.+-+ +++|+++|+++|+|+++|.+|+....-. . ....+...+ .....+..+.+|.++ ...-+|.++
T Consensus 278 tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~-~---~~r~~l~gl----e~aDSit~d~HK~l~-~P~g~G~ll 345 (522)
T TIGR03799 278 TGNIDP---LDEMADIAQELGCHFHVDAAWGGATLLS-N---TYRHLLKGI----ERADSVTIDAHKQLY-VPMGAGMVL 345 (522)
T ss_pred CCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhC-H---HHHHHhcCc----hhCCEEEEChhhcCC-cCcccEEEE
Confidence 999999 8888899999999999999998543222 1 112222210 122345679999764 446689988
Q ss_pred ecChHHHHHHHHhhhc-------------CCCChH----HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 292 SYNDQVVSCARKMSSF-------------GLVSSQ----TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 292 ~~~~~l~~~~~~~~~~-------------~~~s~~----~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
..+..+.+.+.....+ ...+.. ...++...+...+ +++..++..+..+++.+.|++.
T Consensus 346 vr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G-----~~~ii~~~~~la~~l~~~L~~~~ 420 (522)
T TIGR03799 346 FKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKG-----YELLIDQSIEKAKYFADLIQQQP 420 (522)
T ss_pred EeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHhhCC
Confidence 8655544333221011 001111 1122223333222 4555666677788899989877
Q ss_pred CceeecCCceEEEeeec-Cchhhcc----------C----hH-HHHHHHHHHHHhcCeE-eeCCC----CCCCCCCCEEE
Q 011570 354 GIGCLKSNAGLFLWMDL-HHLLKEQ----------T----YE-AEMALWRVIINEVKLN-VSPGS----SFHCPNPGWFR 412 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l-~~~~~~~----------~----~~-~~~~~~~~Ll~~~gV~-v~pg~----~f~~~~~~~iR 412 (483)
++++..+..-..+.+++ |...... . .. -...+.+++.++ |.. |.+-. .+...+.-.+|
T Consensus 421 ~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~-G~~~vs~t~l~~~~~~g~~~~~lR 499 (522)
T TIGR03799 421 DFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREA-GKSFVSRTRLTPAQYDHQPTVVFR 499 (522)
T ss_pred CeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEecccccCCCCcEEEE
Confidence 88877543323444554 3221100 0 00 012344444444 544 44221 12111224699
Q ss_pred EEecc--CCHHHHHHHHHH
Q 011570 413 VCFAN--MDDRTMEIALSR 429 (483)
Q Consensus 413 is~~~--~~~e~l~~~l~~ 429 (483)
+++++ +++++++.+++.
T Consensus 500 ~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 500 VVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEecCCCCCHHHHHHHHHH
Confidence 99977 477888876653
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-15 Score=142.33 Aligned_cols=245 Identities=20% Similarity=0.238 Sum_probs=153.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGV 166 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~ 166 (483)
.|+...-..+|++.+++.++ .+..+++.+++.+..+++++++.|++.|++..++|.... .......|.
T Consensus 24 ~Yg~D~~~~~l~~~i~~l~g----------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~ 93 (290)
T PF01212_consen 24 AYGEDPTTARLEERIAELFG----------KEAALFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGA 93 (290)
T ss_dssp CTTSSHHHHHHHHHHHHHHT----------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTC
T ss_pred ccCCChhHHHHHHHHHHHcC----------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCc
Confidence 47665556777777777765 356678999999999999999999999999999764222 223233599
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCC-CcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP-LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NP-tG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
++++++.++. ..+|+++|++.+.....+..++++|++++|+|- -|+++|.+++++|.++|++||+.++.|.+-....
T Consensus 94 ~~~~l~~~~~--G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a 171 (290)
T PF01212_consen 94 KLIPLPSDDD--GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANA 171 (290)
T ss_dssp EEEEEBECTG--TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHH
T ss_pred EEEECCCccc--CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHh
Confidence 9999997652 479999999999886444467999999999996 3899999999999999999999999999974211
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCC----CChHHH---HHH
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL----VSSQTQ---HLI 318 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~----~s~~~q---~~~ 318 (483)
.. ....++.++.. .-.++.-|++|..|+++ -+.++++++.+.+.....+..+. ...++. ...
T Consensus 172 ~~--~~~~~~~e~~~-------~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~ 240 (290)
T PF01212_consen 172 AA--ALGVSLAEIAA-------GADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQF 240 (290)
T ss_dssp HC--HHHHHHHHHHT-------TSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred hh--cccccHHHHhh-------hCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhH
Confidence 11 11134444443 22244459999988776 24555543434443333222210 111111 000
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
..+...+.+ .....+-.++.+.+.+.|+..|..+..+.
T Consensus 241 ~~l~~l~~~-----~~~~~~~~~~A~~La~~l~~~~~~~~~~~ 278 (290)
T PF01212_consen 241 AALRALELW-----LERARHANAMAKRLAAGLEALGGVLPRPV 278 (290)
T ss_dssp HHHCHEECS-----HHHHHCHHHHHHCHHHCHHEECEEEETTS
T ss_pred HHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHCCCcccCCC
Confidence 111111111 12233345566778888887776554433
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-13 Score=133.53 Aligned_cols=268 Identities=15% Similarity=0.102 Sum_probs=169.3
Q ss_pred CcEEEe-CChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHH-HHHHHHh
Q 011570 120 DRIVMS-GGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA-AYEKAQE 195 (483)
Q Consensus 120 ~~i~it-~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~~ 195 (483)
.+|+++ ++++.++..++..++.+||++++...+..+ +.+.++.. |.. ..+..++..++ .+..++++ .++
T Consensus 67 ~~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~-g~~-~~~~~~~~~g~-~~~~~~~~~~l~---- 139 (360)
T PRK05355 67 YKVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKY-GEV-NVAASSEDDGF-TYIPPLDEWQLS---- 139 (360)
T ss_pred cEEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCc-eEEecccccCC-CCCCChhhccCC----
Confidence 456665 667788999999999999998887766433 23345554 754 45554431222 33333433 443
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
+++++|.+++-.+.||...+ .+.+| +|+++|+|.+.+ ++. .+ .++..+ + +++.|
T Consensus 140 --~~~~~V~~th~eTstGv~~~--~i~~i------~g~l~vVDavss---~g~-~~-idv~~~---------d--~~~~s 193 (360)
T PRK05355 140 --DDAAYVHYTSNETIDGTEFH--ELPDT------GDVPLVADMSSD---ILS-RP-IDVSKF---------G--LIYAG 193 (360)
T ss_pred --CCCCEEEEccCCCcceEecC--ccccc------CCCcEEEEcCcc---ccC-cc-CCHHHc---------c--EEEEe
Confidence 26899999999999999984 25554 799999999986 333 22 333322 3 67889
Q ss_pred CccccCCCCceEEEEEecChHHHHHHHH-----------h---hhcCCCChHHHHHHHHhcCChhHHHH--HHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYSYNDQVVSCARK-----------M---SSFGLVSSQTQHLIATMLSDDQFVEK--FIAESAKRI 339 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~~~l~~~~~~-----------~---~~~~~~s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l 339 (483)
..|.+|.+| +|+++.+++.+.+ +.. . ..+++.+.....++.++|+. +.+ -++...++.
T Consensus 194 sqK~lgP~G--lg~l~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~---i~~~gG~e~i~~r~ 267 (360)
T PRK05355 194 AQKNIGPAG--LTIVIVREDLLGR-ALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKW---LKEQGGVAAMEKRN 267 (360)
T ss_pred ccccccCCc--eEEEEECHHHHhh-cccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHH---HHHccCHHHHHHHH
Confidence 999999777 7888885444322 211 0 11233444444444444432 222 256667778
Q ss_pred HHHHHHHHHhhhcCCce-eecC---CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe
Q 011570 340 AERHKAFTWGLSQVGIG-CLKS---NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF 415 (483)
Q Consensus 340 ~~~~~~l~~~L~~~gi~-~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~ 415 (483)
++..+++.+.|+++|+- ...+ ..+..+.+.++... ...++...+. ++|+.+.+|.. ..+.+|+|+
T Consensus 268 ~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~------~~~~~~~~~~-~~Gi~~~~~~~----~~g~vRiS~ 336 (360)
T PRK05355 268 QEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEE------LDKKFLAEAK-AAGLVGLKGHR----SVGGMRASI 336 (360)
T ss_pred HHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChH------HHHHHHHHHH-HCCCcccCCCC----ccCcEEEEC
Confidence 88889999999988742 2111 23234556666531 1124444444 56998866652 246899999
Q ss_pred cc-CCHHHHHHHHHHHHHHHHHh
Q 011570 416 AN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 416 ~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.. .+.++++.+++.|+++++++
T Consensus 337 ~~~nt~eei~~l~~~l~~~~~~~ 359 (360)
T PRK05355 337 YNAMPLEGVQALVDFMKEFERRH 359 (360)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 76 58999999999999987754
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=138.19 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-HhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-LRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-~~~~~G~~~~~v~~~ 174 (483)
..+..+..|+.++ .....+++||+|.++.+++.+++.+||.||++..||-+.... +.+. |++.+.+...
T Consensus 176 i~eAq~~AA~~fg---------Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLs-Ga~PVYl~P~ 245 (720)
T PRK13578 176 AKDAQKHAAKVFN---------ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQA-GATPVYLETA 245 (720)
T ss_pred HHHHHHHHHHHhC---------CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHc-CCeEEEeecc
Confidence 4566666666665 345789999999999999999999999999999999998875 6664 9999988754
Q ss_pred CCCCcc----cCH-----HHHHHHHHHHHhc----CCceeEEEEeCCCCCCcCCCCHHHHHHHHHH-HhhcCcEEEEccc
Q 011570 175 SSNDFK----VTM-----EALEAAYEKAQES----NIRIKGVLITNPSNPLGTFLDRETLKDIVSF-INEKNIHLVCDEI 240 (483)
Q Consensus 175 ~~~~~~----~d~-----~~l~~~i~~~~~~----~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~-a~~~~~~iI~Dea 240 (483)
- +.|+ ++. +.++++|++...+ .+..+++++++|+. -|.+++ +++|++. ++.++ .|++|||
T Consensus 246 ~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~llvDEA 319 (720)
T PRK13578 246 R-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-YILFDSA 319 (720)
T ss_pred c-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-cEEEeCc
Confidence 3 2233 354 4488888764111 12258999999987 699998 7777777 56777 9999999
Q ss_pred cccCc-cCCC-CCcc-hHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEe
Q 011570 241 YAATV-FTKE-SSFV-SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYS 292 (483)
Q Consensus 241 y~~~~-~~~~-~~~~-s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~ 292 (483)
|+... |... +.++ +...+.. +...++++.|.+|.+ +++--+ ++..
T Consensus 320 hgah~~F~p~~~~~p~~al~~Ga-----D~p~i~v~QStHKtL--~alTQaS~LHv 368 (720)
T PRK13578 320 WVGYEQFIPMMADCSPLLLELNE-----NDPGIFVTQSVHKQQ--AGFSQTSQIHK 368 (720)
T ss_pred chhhhccCcccccCChhhhhcCC-----CCCCeEEEEChhhcc--hhhhhHhhhhc
Confidence 97652 3220 0121 2122221 234578899999997 666666 5555
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-14 Score=134.32 Aligned_cols=299 Identities=19% Similarity=0.238 Sum_probs=199.8
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
.-+.++.+.+|+|++ .++.+++..| -......+.+|+.||.-|+-.+-.+..+...++.. |+.+..+..
T Consensus 182 ~~hkelE~l~A~f~g---------~e~a~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLS-gAtiRVfkH 250 (519)
T KOG1357|consen 182 EEHKELEELVARFLG---------VEDAIVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLS-GATTRVFRH 250 (519)
T ss_pred HHHHHHHHHHHHhcC---------CcceEEEecc-ccccccCcceeecCCcceeeccccchheecccccc-CceEEEEec
Confidence 346788889999987 5778888888 33455667789999999999999999888878775 888877775
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCc-----eeEEEE--eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIR-----IKGVLI--TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~-----~~~i~l--~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+ |.+.||+.|++.-..++. -|-|++ -.-...-|.+.. +.+++++++++..+++.||+++....
T Consensus 251 N-------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~ 320 (519)
T KOG1357|consen 251 N-------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAM 320 (519)
T ss_pred C-------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeecccccccc
Confidence 4 678888888876554321 122333 344567777777 88899999999999999999976544
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-----CCCChHHHHHHHHh
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-----GLVSSQTQHLIATM 321 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-----~~~s~~~q~~~~~~ 321 (483)
+. .......+..-. ..+..|.+++|.|.||.+| ||+.+ ++.+++.++..... ...++.+|.....+
T Consensus 321 g~--tGrgvce~~g~d---~~dvDImMGtftKSfga~G---Gyiag-sk~lid~lrt~s~~~~yat~~sppvaqq~~ssl 391 (519)
T KOG1357|consen 321 GA--TGRGVCEYFGVD---PEDVDIMMGTFTKSFGAAG---GYIAG-SKELIDYLRTPSPSALYATSLSPPVAQQILTSV 391 (519)
T ss_pred CC--CCcceeeccCCC---chhheeecceehhhccccc---ceecC-cHHHHhhhccCCCceeecccCChHHHHHHHHHH
Confidence 32 112222222100 2456788999999999887 88888 67777776554332 22334455554333
Q ss_pred ---cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeec--CchhhccChHHHHHHHHHHHHhcCeE
Q 011570 322 ---LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL--HHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 322 ---l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l--~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
...+. ....++..+++.++..+++..|...|+.++.......+.+-+ +.. -..+.+.++++ +|.
T Consensus 392 ~~i~G~dg--t~~g~~k~~~l~~ns~yfr~~l~~~gfivyG~~dSpVvplll~~~~k--------~~~f~r~~l~~-nig 460 (519)
T KOG1357|consen 392 KHIMGEDG--TNRGRQKIERLAENSRYFRWELQKMGFIVYGNNDSPVVPLLLYGPAK--------IVAFSREMLER-NIG 460 (519)
T ss_pred HhhcCCCc--ccHHHHHHHHHHhhhHHHHHhhhcCcEEEecCCCCCcceeeecCccc--------ccHHHHHHHhc-Cce
Confidence 22222 344677788899999999999999998888666553332222 211 11455567754 665
Q ss_pred eeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 397 VSPGSSFH-CPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 397 v~pg~~f~-~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
+.-+.... +.-.+.+|+|.+. .+.|+++.+++.+.+.
T Consensus 461 vVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~ 499 (519)
T KOG1357|consen 461 VVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRV 499 (519)
T ss_pred EEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhh
Confidence 54332222 2234568999976 5889999888877653
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-12 Score=129.96 Aligned_cols=295 Identities=15% Similarity=0.172 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC------hHHHHhhhcCcEEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG------FDRDLRWRTGVQLVP 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~------~~~~~~~~~G~~~~~ 170 (483)
..+++.+|++.+ .+..+++++++.++..++.+ +.+||+|+++...+.. +...+... |++++.
T Consensus 130 ~~~e~~lA~l~G----------ae~a~vv~sgtaAl~l~l~~-l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~-G~~l~~ 197 (464)
T PRK04311 130 RALAALLCALTG----------AEDALVVNNNAAAVLLALNA-LAAGKEVIVSRGELVEIGGAFRIPDVMRQA-GARLVE 197 (464)
T ss_pred HHHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHH-hCCCCEEEEcchhhhhcCcchhhHHHHHHC-CcEEEE
Confidence 577788888765 34677788888999988866 5799999998764431 22344554 999998
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCC--Cc--CCCCHHHHHHHHHHHhhcCcEEEEccccccCc-
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP--LG--TFLDRETLKDIVSFINEKNIHLVCDEIYAATV- 245 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NP--tG--~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~- 245 (483)
++.+. ..++++++++|.+ ++++|++.+++|| +| ...+ +++|+++|++||+++|+|.+.+.+.
T Consensus 198 v~~~~----~t~~~dle~aI~~------~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~ 264 (464)
T PRK04311 198 VGTTN----RTHLRDYEQAINE------NTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDLGSGSLVD 264 (464)
T ss_pred ECCCC----CCCHHHHHHhcCc------cCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEECCCccccc
Confidence 87643 2478899998864 7899999999998 34 4556 8899999999999999999654320
Q ss_pred ---cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHHHHHHHH
Q 011570 246 ---FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQTQHLIAT 320 (483)
Q Consensus 246 ---~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~q~~~~~ 320 (483)
|.- ...+.+.... ..+..+++.|.+|.+|-| ..|++++ ++.+.+.++. +.....+......++.+
T Consensus 265 ~~~~gl-~~~p~~~~~l------~~GaDiv~fSg~K~LgGp--~~G~i~g-~~~li~~l~~~~~~r~lr~dk~~l~~l~~ 334 (464)
T PRK04311 265 LSQYGL-PDEPTVQELL------AAGVDLVTFSGDKLLGGP--QAGIIVG-KKELIARLKKHPLKRALRVDKLTLAALEA 334 (464)
T ss_pred chhccC-CCCCchhhHH------hcCCcEEEecCcccccCC--ceEEEEE-cHHHHHHHhhchhHHHHhcchHHHHHHHH
Confidence 110 0112222221 235568889999998633 5899998 4555554432 11111123333333322
Q ss_pred hc----CChh-HH----HHHHHHHHHHHHHHHHHHHHhhhcC---C--ceeecC----CceEEEeeecCch---hhccCh
Q 011570 321 ML----SDDQ-FV----EKFIAESAKRIAERHKAFTWGLSQV---G--IGCLKS----NAGLFLWMDLHHL---LKEQTY 379 (483)
Q Consensus 321 ~l----~~~~-~~----~~~~~~~~~~l~~~~~~l~~~L~~~---g--i~~~~~----~~g~f~~~~l~~~---~~~~~~ 379 (483)
.+ ...+ +. .+.+....+.+.++.+.+.+.|..+ + +++.+. .||-.--..+|.. +.....
T Consensus 335 ~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~ 414 (464)
T PRK04311 335 TLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDR 414 (464)
T ss_pred HHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCC
Confidence 22 2211 10 0123333466667778888888765 2 233322 1121111111111 000000
Q ss_pred HHHHHHHHHHHHhc--CeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 380 EAEMALWRVIINEV--KLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~--gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
...++..+ |++. .|..+ -.++.+.+-+....+++++.++++|++++.
T Consensus 415 -~~~~l~~~-lr~~~~~i~~r-------~~~~~~~ld~r~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 415 -SLEALAAR-LRLLPPPVIGR-------IEDGRLLLDLRTLEEEDEERLAAALLEALN 463 (464)
T ss_pred -CHHHHHHH-HhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHHHHHhh
Confidence 12244444 3343 34443 245678899876788999999999988754
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-11 Score=127.78 Aligned_cols=307 Identities=13% Similarity=0.061 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+.+..+|+.+.+... -+.+.+++++++++++..++.... + + ..+|+....+|.+.........|.
T Consensus 90 ~~~~~lae~L~~~~p----~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~ 165 (459)
T PRK05965 90 EPAIRLAAKLAERAP----GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAF 165 (459)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchh
Confidence 444456666554321 234689999999999999987642 1 2 257898999987764321111111
Q ss_pred ---------EEEEeecC--CCCCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHH
Q 011570 167 ---------QLVPVVCD--SSNDFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVS 226 (483)
Q Consensus 167 ---------~~~~v~~~--~~~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~ 226 (483)
.+..++.+ ....+.-| ++.+++.+... ...++.+|++...+...|.+ .+.+.++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~ 243 (459)
T PRK05965 166 HRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL--GADNVAAFFCEPIQGSGGVIVPPKGWLKAMRE 243 (459)
T ss_pred hcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCCCCccCCHHHHHHHHH
Confidence 01122211 11111123 24566666431 11356666666546556764 57788999999
Q ss_pred HHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-
Q 011570 227 FINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM- 304 (483)
Q Consensus 227 ~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~- 304 (483)
+|++||+++|.||+..++...+ .+.....+.- .+| |+ +++|.+| .| +.+|.+++ .+++.+.+...
T Consensus 244 lc~~~gillI~DEV~tGfGRtG--~~~a~~~~gv-----~PD--iv--~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~ 310 (459)
T PRK05965 244 ACRELGILFVADEVITGFGRTG--PLFACEAEGV-----VPD--LM--TVAKGLT-SGYVPMGAVLM-SDHVYQGIADGA 310 (459)
T ss_pred HHHHcCCEEEEechhccCccCc--hhhhHhhcCC-----CCC--eE--Eechhhc-cCCcceeEEEE-cHHHHHHHhccc
Confidence 9999999999999998743232 2222222211 222 22 6799998 89 59999999 55565554311
Q ss_pred -------h-hcCCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhc---CCceeecCCceEEEeeec
Q 011570 305 -------S-SFGLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQ---VGIGCLKSNAGLFLWMDL 370 (483)
Q Consensus 305 -------~-~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~gi~~~~~~~g~f~~~~l 370 (483)
. ..+..++++.+++.+.|+ +++. .+..++.-+++.+.|++ .++......-|+++-+++
T Consensus 311 ~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l--------~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~ 382 (459)
T PRK05965 311 GAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGL--------LANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALEL 382 (459)
T ss_pred cccccccccCCCCCCHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEE
Confidence 1 112356666665555543 2221 22223333444444443 232222334456777777
Q ss_pred CchhhccC-----hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 371 HHLLKEQT-----YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 371 ~~~~~~~~-----~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
........ ......+...++ ++||++.+. +.+.+|+.... ++++++++++++|.+++++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gll~~~~------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 383 VADKATKTPFDAALDPADRIFDRAY-ANGLVFRAF------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred eccccccCCCCchhHHHHHHHHHHH-hCCeEEEec------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 43111000 011234555566 469998753 24579999765 599999999999999998763
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=138.22 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=119.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+..+.+|+.++ .....+++||+|.++.+++.+++.+||.|+++..||-+....+... |++.+.++...
T Consensus 197 i~eAe~~AA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLils-ga~PVYl~P~r 266 (714)
T PRK15400 197 HKEAEEYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMS-DVTPIYFRPTR 266 (714)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeEEEecccc
Confidence 3456666666655 3457899999999999999999999999999999999988888775 99999887543
Q ss_pred CCCcc----cC-----HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-
Q 011570 176 SNDFK----VT-----MEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV- 245 (483)
Q Consensus 176 ~~~~~----~d-----~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~- 245 (483)
..|+ ++ .+.++++|++.... +++.++++++|+. -|.+++ ++.|++.|+.++ |++||||+...
T Consensus 267 -n~~Gi~g~I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~ 338 (714)
T PRK15400 267 -NAYGILGGIPQSEFQHATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTN 338 (714)
T ss_pred -cccCCccCCCccccCHHHHHHHHHhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccchhhhc
Confidence 2332 34 78899888764321 2334799999954 799999 677777777776 78999997652
Q ss_pred cCCCCCcc--hHHHhhhhccccCCCeEEEEecCccccCCCCceEE
Q 011570 246 FTKESSFV--SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG 288 (483)
Q Consensus 246 ~~~~~~~~--s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG 288 (483)
|.. .+. +...... ...+.++++.|.+|.+ +|+.-+
T Consensus 339 F~p--~~~~~sam~~ga----~~~~~i~vtQStHKtL--~alTQa 375 (714)
T PRK15400 339 FSP--IYEGKCGMSGGR----VEGKVIYETQSTHKLL--AAFSQA 375 (714)
T ss_pred cCc--ccCCcChhhcCC----CCCCceEEEEchhhcc--cchhHH
Confidence 322 121 2221111 0225578899999997 666555
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-12 Score=130.04 Aligned_cols=310 Identities=11% Similarity=0.076 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.+....+|+.+.+.+. +...+.+++++++++|+..++.... .++ ..|+..+-+|.+.........|..
T Consensus 132 ~~~~~~lae~L~~~~~---~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~ 208 (504)
T PLN02760 132 TKPSLDLAKELLEMFT---ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPA 208 (504)
T ss_pred cHHHHHHHHHHHhhcC---CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChh
Confidence 4555666666554321 1123579999999999999998762 123 578888888876543221111221
Q ss_pred -----------EEEeecCCCCCc-----------ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHH
Q 011570 168 -----------LVPVVCDSSNDF-----------KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDI 224 (483)
Q Consensus 168 -----------~~~v~~~~~~~~-----------~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i 224 (483)
+..++.+....+ ....+.|++.+... ...++.+|++.....-.|.+. +.+.+++|
T Consensus 209 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAAvI~EPv~g~gG~~~p~~~yl~~l 286 (504)
T PLN02760 209 LHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKE--GPETIAAFIAEPVMGAGGVIPPPATYFEKI 286 (504)
T ss_pred hccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhc--CCCceEEEEECCccCCCCCcCCCHHHHHHH
Confidence 111121100000 00123456555321 112455555543355557654 67889999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||++.++...+ . ......+.- .+| +-+|+|.+| .| +.+|.+++ ++++.+.+..
T Consensus 287 r~lc~~~g~lLI~DEV~TGfGRtG-~-~~a~e~~gv-----~PD----ivtlgK~lg-gG~~PigAv~~-~~~i~d~~~~ 353 (504)
T PLN02760 287 QAVLKKYDILFIADEVICAFGRLG-T-MFGCDKYNI-----KPD----LVSLAKALS-SAYMPIGAVLV-SPEISDVIHS 353 (504)
T ss_pred HHHHHHcCCEEEecchhhCCcccc-h-hhHHHhcCC-----CCc----EEEeccccc-CCccccceEee-cHHHHhhhhc
Confidence 999999999999999997642233 2 222211110 223 348899998 66 58999888 5666666532
Q ss_pred h--------hh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh---cCCceeecCCceEEEeeecC
Q 011570 304 M--------SS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS---QVGIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 304 ~--------~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~---~~gi~~~~~~~g~f~~~~l~ 371 (483)
. .. .+..++++.+++.+.|+-- ++ +...++++++-+++.+.|+ +.++......-|+++-+++.
T Consensus 354 ~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~ 428 (504)
T PLN02760 354 QSNKLGSFAHGFTYSGHPVSCAVALEALKIY---KE--RNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFV 428 (504)
T ss_pred ccccccCcccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEe
Confidence 1 11 1234666666655555321 10 1122233333334444333 33433223334567777774
Q ss_pred chhhccC-h----HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 372 HLLKEQT-Y----EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 372 ~~~~~~~-~----~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
....... . .....+...++ ++||.+.+.. ..+|++... ++++++++++++|.+++++.
T Consensus 429 ~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 429 DNKSPNDPFPAEWGVGAYFGAECK-KRGMLVRVAG-------DNIMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred cCCcccccccchhHHHHHHHHHHH-hCCcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3211110 0 11224556666 4699987631 358999765 59999999999999998765
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-11 Score=124.94 Aligned_cols=302 Identities=14% Similarity=0.129 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CC-CCeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DP-GDAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~-gd~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+.+..+ ..-+.+++++++++++..++.... .+ ..+|+...-+|.+.........|.
T Consensus 97 ~~~~~lAe~L~~~~p----~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~ 172 (453)
T PRK06943 97 EPAIELAERLAALTG----GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALF 172 (453)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhh
Confidence 445556666654322 123589999999999999987652 12 367999999887754222111111
Q ss_pred ---------EEEEeecCCCCC--cc--------cCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcC-CCCHHHHHHHH
Q 011570 167 ---------QLVPVVCDSSND--FK--------VTMEALEAAYEKAQESNIRIKGVLITN-PSNPLGT-FLDRETLKDIV 225 (483)
Q Consensus 167 ---------~~~~v~~~~~~~--~~--------~d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~-~~~~~~l~~i~ 225 (483)
.+..++.+...+ +. -+++.+++.+.+ .+.++.+|++.- ...-.|. +.+.+.++++.
T Consensus 173 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr 249 (453)
T PRK06943 173 KDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAE---RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLR 249 (453)
T ss_pred hcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEeccccccCCcccCCHHHHHHHH
Confidence 111222211100 01 124666666653 234677776664 2555676 45788899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH-
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK- 303 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~- 303 (483)
++|++||+++|.||+..++...+ .+.....+.- .+| ++ +++|.+| .| +.+|.+++ .+++.+.+..
T Consensus 250 ~lc~~~gillI~DEV~TG~GRtG--~~fa~~~~gv-----~PD-iv---t~gKgl~-gG~~Pi~av~~-~~ei~~~~~~~ 316 (453)
T PRK06943 250 ALCDRYGVHLIADEIAVGCGRTG--TFFACEQAGV-----WPD-FL---CLSKGIS-GGYLPLSLVLS-RDAIFAAFYDD 316 (453)
T ss_pred HHHHHcCCEEEeechhhCCCCCc--chhHHHhCCC-----CCC-eE---eeehhhc-cCcccceEEEE-cHHHHHhhccc
Confidence 99999999999999998743232 2222222211 223 22 5699998 88 59999999 5566665532
Q ss_pred -------hhhcCCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeee
Q 011570 304 -------MSSFGLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMD 369 (483)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~ 369 (483)
....+..++++.+++.+.|+ +++. .++.++.-+++.+.|+++ ++.-.. .-|+++-++
T Consensus 317 ~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l--------~~~~~~~G~~l~~~L~~l~~~~~v~~vr-G~Gl~~gve 387 (453)
T PRK06943 317 DVTRGFLHSHSYTGNPLACRAALATLDLFAEDDV--------LARNARKSARLRAALAPLAAHPQVRHLR-QRGTIFAFD 387 (453)
T ss_pred CccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHhcCCCEEeEe-ccccEEEEE
Confidence 11112246666666555543 2222 122223333344434332 333222 345677777
Q ss_pred cCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 370 l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+...... .......+...++ ++||++.+.. +.+||+... ++++++++++++|.+++++.
T Consensus 388 l~~~~~~-~~~~~~~i~~~~~-~~Gll~~~~g-------~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 388 VALDGDA-ARTFSRRFFEAAL-ERELLLRPIG-------TTVYLMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred EccCCCc-chHHHHHHHHHHH-HCCcEEEecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 7521111 1111235666666 4699987631 359999655 59999999999999999875
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-12 Score=121.17 Aligned_cols=296 Identities=17% Similarity=0.213 Sum_probs=185.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
...|.+.||..-+. -.-+.+++++.++..++..++++||+|+...--|++.... ++.+ |+++..+
T Consensus 64 ~~vlE~RiAaLEGG----------~aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~-Gi~v~fv 132 (426)
T COG2873 64 TDVLEERIAALEGG----------VAALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL-GIEVRFV 132 (426)
T ss_pred HHHHHHHHHHhhcc----------hhhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc-CcEEEEe
Confidence 46788888877552 2345567778899999999999999999888777665544 4554 9999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
.. .|++.++++|++ ++|+|++..-.||-+.+.+ +++|+++|+++|+++|+|..++.-++-.
T Consensus 133 d~-------~d~~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl~r--- 193 (426)
T COG2873 133 DP-------DDPENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYLCR--- 193 (426)
T ss_pred CC-------CCHHHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCcceecc---
Confidence 63 368999999986 8999999999999999999 8999999999999999999986432221
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHH-HHHhhh-------cCC--------CChHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC-ARKMSS-------FGL--------VSSQTQ 315 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~-~~~~~~-------~~~--------~s~~~q 315 (483)
+ + ++.-.|+++|+||..|-.|--+|-++.+...+... -.++.. +.. ...+..
T Consensus 194 --P---~-------~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~ 261 (426)
T COG2873 194 --P---I-------EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFII 261 (426)
T ss_pred --h---h-------hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHH
Confidence 1 1 23556889999999988888888776642211111 000000 000 001111
Q ss_pred HHHHHhcCCh--------hHH----HHHHHHHHHHHHHHHHHHHHhhhcC-Ccee------------------ecCCceE
Q 011570 316 HLIATMLSDD--------QFV----EKFIAESAKRIAERHKAFTWGLSQV-GIGC------------------LKSNAGL 364 (483)
Q Consensus 316 ~~~~~~l~~~--------~~~----~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~------------------~~~~~g~ 364 (483)
.+-...|++- .|+ -+.+.-+.++..++...+.+.|+.+ .+.+ .+...|-
T Consensus 262 ~~r~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~ 341 (426)
T COG2873 262 KARVQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGA 341 (426)
T ss_pred HHHHHHHHhcccccCcHHHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCce
Confidence 1112222221 000 0123334555667777888888876 2222 1222344
Q ss_pred EEeeecCchhh-ccChHHHHHHHHHHHHh---cCeEeeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHH
Q 011570 365 FLWMDLHHLLK-EQTYEAEMALWRVIINE---VKLNVSPGSSFHCP-----------NPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 365 f~~~~l~~~~~-~~~~~~~~~~~~~Ll~~---~gV~v~pg~~f~~~-----------~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
.+.+.+..+.. ...+.+..+++..+..- .-+.+-|.+....+ .++.||+|++ + |+++.++.-
T Consensus 342 vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~~~IRlSVG-I--Ed~~DiiaD 418 (426)
T COG2873 342 VLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTPDLIRLSVG-I--EDIDDIIAD 418 (426)
T ss_pred EEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCCCcEEEEec-c--CCHHHHHHH
Confidence 66677765422 22233444555444321 12455665543321 2568999998 3 567777778
Q ss_pred HHHHHHH
Q 011570 430 ITSFMLK 436 (483)
Q Consensus 430 L~~~l~~ 436 (483)
|++++++
T Consensus 419 l~qAl~~ 425 (426)
T COG2873 419 LEQALEA 425 (426)
T ss_pred HHHHHhc
Confidence 8777654
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-11 Score=126.85 Aligned_cols=311 Identities=10% Similarity=0.003 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++.... . + ..+|+....+|.+.........|.
T Consensus 93 ~~~~~~lAe~L~~~~p----~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~ 168 (461)
T PRK07482 93 TEASITLSKRIIDRAP----AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSL 168 (461)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCch
Confidence 4566667776665421 234689999999999999987652 1 2 257888888887753321111110
Q ss_pred ----------EEEEeecCCCCC----------c-ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHH
Q 011570 167 ----------QLVPVVCDSSND----------F-KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDI 224 (483)
Q Consensus 167 ----------~~~~v~~~~~~~----------~-~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i 224 (483)
.+..++.+.... + .-+++.+++.+.+. ...++.+|++.....-.|.+ .+.+.+++|
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~l 246 (461)
T PRK07482 169 FHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAI 246 (461)
T ss_pred hhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHH
Confidence 111121111000 0 01356666666421 12356666655445555766 577789999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||+..++...+ . +.....+.- .+| ++ +++|.+| .|. .+|.+++ .+.+.+.+..
T Consensus 247 r~lc~~~giLlI~DEV~tGfGRtG-~-~~a~~~~gv-----~PD--iv--~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~ 313 (461)
T PRK07482 247 QAVLKKYDILLIADEVVTGFGRLG-S-MFGSDHYGI-----EPD--LI--TVAKGLT-SAYAPLSGSIV-GEKVWDVLEQ 313 (461)
T ss_pred HHHHHHhCCEEEEeccccCCCcCc-c-hhhHHhcCC-----CCC--EE--EEccccc-cCccccceeee-cHHHHHHHhc
Confidence 999999999999999998743333 2 222222211 223 22 5699998 785 8998888 4556555432
Q ss_pred h---------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh----hcCCceeecCCceEEEeeec
Q 011570 304 M---------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGL----SQVGIGCLKSNAGLFLWMDL 370 (483)
Q Consensus 304 ~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L----~~~gi~~~~~~~g~f~~~~l 370 (483)
. ...+..++++.+++.+.|+--. + ....+..++.-+++.+.| .++++......-|+++.+++
T Consensus 314 ~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel 388 (461)
T PRK07482 314 GSDEHGAIGHGWTYSGHPICAAAALANLDILE--R---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEF 388 (461)
T ss_pred ccccCCccccCCCCCcCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEe
Confidence 1 0112356677666655553211 0 011122233333344433 33444333444567777887
Q ss_pred CchhhccC-h----HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 371 HHLLKEQT-Y----EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 371 ~~~~~~~~-~----~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
........ + .....++..++ ++||++.++. ..+.+|+..+. ++++++++++++|.+++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~~-----~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 389 VADRDDRTPFDPALKIGPQVSAAAL-ERGVIARAMP-----HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred ccCCCcCCCCChhhHHHHHHHHHHH-HCCcEEecCC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 53211000 0 11235666666 4699986532 12469998765 59999999999999999875
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-11 Score=125.72 Aligned_cols=303 Identities=14% Similarity=0.162 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhc--CcEEEE--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRT--GVQLVP-- 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~--G~~~~~-- 170 (483)
.++...+|+.+.+... ..+.+.++++++++...+++... ...++|+...-+|.+....+.... |.....
T Consensus 138 ~~~~~~lAe~l~~~~p-----~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~ 212 (474)
T PLN02482 138 CLLENVLAEMVIDAVP-----SVEMVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLP 212 (474)
T ss_pred CHHHHHHHHHHHHhCC-----CCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCC
Confidence 3556667777765422 25799999999999998886642 223678888888888653221100 110000
Q ss_pred ----eecCC-C----CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCcEEEEccc
Q 011570 171 ----VVCDS-S----NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 171 ----v~~~~-~----~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
+|... . -.|+ |++.+++.+.+. +.++.+|++.......|.+.+ .+.+++|.++|++||+++|.||+
T Consensus 213 ~~~g~~~~~~~~~~~~~~n-d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV 288 (474)
T PLN02482 213 DSPGVPKAATSATLTAPYN-DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEV 288 (474)
T ss_pred CCCCCCCCCCCCeEEecCC-ChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 00000 0 0111 688898888642 234555555443555677665 77899999999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-----CCCChHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-----GLVSSQTQ 315 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-----~~~s~~~q 315 (483)
+.++ ..+ . ........ . .+| + .+|+|.+| .|+.+|.+++ .+++.+.+.....+ ...++++.
T Consensus 289 ~tGf-R~g-~--~ga~~~~g-v---~PD--i--~t~gK~lg-gG~Pigav~g-~~ei~~~~~~~~~~~~~~T~~gnpl~~ 354 (474)
T PLN02482 289 MTGF-RIA-Y--GGAQEYFG-I---TPD--L--TTLGKVIG-GGLPVGAYGG-RREIMEMVAPAGPMYQAGTLSGNPLAM 354 (474)
T ss_pred ccCe-ecC-c--chHhHHhC-C---CCC--E--EEecchhh-CCCceEEEEE-cHHHHHhhccCCCcccccCcchhHHHH
Confidence 9764 332 2 12222211 0 223 2 38899998 8999999988 56676665321111 11355555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceee-cCCceEEEeeecCc-hh----h--ccChHHHH
Q 011570 316 HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCL-KSNAGLFLWMDLHH-LL----K--EQTYEAEM 383 (483)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~-~~~~g~f~~~~l~~-~~----~--~~~~~~~~ 383 (483)
.++.+.|+.- ++ ....+++.++-+++.+.|++ .|+++. ..-++++ .+.+.. .. + ........
T Consensus 355 aAala~L~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~-gi~f~~~~~~~~~~~~~~d~~~~~ 428 (474)
T PLN02482 355 TAGIHTLKRL---QQ--PGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMF-GFFFTEGPVYNFADAKKSDTAKFA 428 (474)
T ss_pred HHHHHHHHHH---hc--cCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEE-EEEEecCCccChhhhccCCHHHHH
Confidence 5444443211 10 11223333334444444433 345543 2334433 222211 00 0 01111223
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
.+...+++ +||.+.|... . .++ +++. +++++++++++++.+++.+
T Consensus 429 ~~~~~l~~-~Gv~~~~~~~-~---~~~--psl~-ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 429 RFHRGMLE-EGVYLAPSQF-E---AGF--TSLA-HTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHHH-CCeEEeccCC-C---CCc--CCCC-CCHHHHHHHHHHHHHHHHh
Confidence 56677775 6999987421 1 111 3443 5999999999999998864
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-11 Score=123.02 Aligned_cols=307 Identities=10% Similarity=0.055 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------C-CCeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------P-GDAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+....+|+.+.+... -..+.|++++++++++..++..... + ..+|+....+|.+.........|.
T Consensus 88 ~~~~~~la~~l~~~~p----~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~ 163 (442)
T PRK13360 88 HPKAFELANRIAEIAP----GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVP 163 (442)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChh
Confidence 3445566666654321 1236899999999999998865321 2 257999999887754321111111
Q ss_pred ----------EEEEeecCC---CCCccc--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHH
Q 011570 167 ----------QLVPVVCDS---SNDFKV--------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDI 224 (483)
Q Consensus 167 ----------~~~~v~~~~---~~~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i 224 (483)
.+..+|... ...|.. .++.+++.+... ...++.+|++.......|.+ .+.+.+++|
T Consensus 164 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~l 241 (442)
T PRK13360 164 NRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRL 241 (442)
T ss_pred hhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHH
Confidence 112222211 001111 145666666431 11345555555445556775 467789999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|+||++.++...+ . ....... . . .+| ++ +|||.+| .| +.+|.+++ ++++.+.+..
T Consensus 242 r~lc~~~g~llI~DEv~tG~GrtG-~-~~a~~~~-g-v---~PD--iv--t~gK~l~-gG~~P~gav~~-~~~i~~~~~~ 308 (442)
T PRK13360 242 REICDKHGILLIFDEVITGFGRLG-A-PFAAQYF-G-V---TPD--LL--TCAKGLT-NGAIPMGAVFV-SSEIHDAFMQ 308 (442)
T ss_pred HHHHHHcCCEEEEechhhCCCCCc-c-chhhhhc-C-C---CCc--ee--eeeeccc-cCccceEEEEE-cHHHHHHhhc
Confidence 999999999999999997642222 2 1121111 1 0 223 32 8899997 66 78999888 5556555432
Q ss_pred h--------hh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cee--ecCCceEEEeeecC
Q 011570 304 M--------SS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGC--LKSNAGLFLWMDLH 371 (483)
Q Consensus 304 ~--------~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~--~~~~~g~f~~~~l~ 371 (483)
. .. .+..++++.+++.+.|+- +++ ....++.++.-+++.+.|++++ ... ....-|++.-+.+.
T Consensus 309 ~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~---l~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~ 383 (442)
T PRK13360 309 GPEAGIEFFHGYTYSGHPLACAAALATLDL---YER--EGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELA 383 (442)
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEe
Confidence 1 11 122456665555555432 111 1122333444445555554431 111 11223445555553
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
....... ....++...++ ++||.+.++ .+.+||+... ++++++++++++|.+++++
T Consensus 384 ~~~~~~~-~~~~~~~~~l~-~~Gvl~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 384 PRDGKPG-KRAYEVFLKCF-EKGLMIRYT-------GDILALSPPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred cCCCCcc-hhHHHHHHHHH-HCCcEEEec-------CCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 2111111 12235666666 469998753 2469999765 5999999999999998865
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-11 Score=124.23 Aligned_cols=292 Identities=8% Similarity=0.023 Sum_probs=190.5
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCC--cEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPD--RIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~--~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
+..++.+.+-+|+.+.+| .+++ .-++|+|+|+++...+.+..+ +...|++++-+|.++..++..+ |.+++.
T Consensus 130 ~s~~~E~~Vi~wla~L~g----~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll-gi~~~~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWE----IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY-RMECVK 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc-CCcceE
Confidence 468999999999999887 3332 368899999999888766533 3347888999999999998886 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCc-----EEEEccccccCc
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNI-----HLVCDEIYAATV 245 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~-----~iI~Deay~~~~ 245 (483)
||.++ ++.+|+++|+++|.+. ..++-+|+.+-++.++|.+=+ +++|.++|+++|+ |+.+|.+|+++.
T Consensus 205 Vp~d~--~g~mD~~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~ 276 (470)
T PLN02263 205 VDTLV--SGEIDCADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLM 276 (470)
T ss_pred eccCC--CCcCcHHHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhH
Confidence 99864 5689999999999752 123445566777889999988 7788888888886 999999998764
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-------CCCCh-----H
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-------GLVSS-----Q 313 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-------~~~s~-----~ 313 (483)
... ........... .-.-+..+.+|.++ ....+|.++...+.+ ..+.....| ...+. +
T Consensus 277 lPf-~~~~~~~df~~-------~vDSIsvD~HK~l~-~P~~cgvll~R~~~~-~~~~~~~~Yl~~~d~ti~gSR~g~~al 346 (470)
T PLN02263 277 MPF-VKRAPKVTFKK-------PIGSVSVSGHKFVG-CPMPCGVQITRMEHI-NVLSSNVEYLASRDATIMGSRNGHAPI 346 (470)
T ss_pred hhh-cccccccCCCc-------CccEEEECCccccC-CCcCEEEEEEehhhH-hhhccChHhhCCCCCCcCCCCCcHHHH
Confidence 311 00011111111 12223458999876 778899998864332 222111111 01111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
...++...+...+ +++..+...+..+++.+.|++.|+... .|.. +.+.+.-|.. +. . .
T Consensus 347 ~lW~~L~~~G~~G-----~~~~i~~~~~~A~~l~~~l~~~g~~~~~~p~s-~~V~f~~p~~----------~~----~-~ 405 (470)
T PLN02263 347 FLWYTLNRKGYRG-----FQKEVQKCLRNAHYLKDRLREAGISAMLNELS-STVVFERPKD----------EE----F-V 405 (470)
T ss_pred HHHHHHHHhCHHH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCc-eEEEEecCch----------HH----h-h
Confidence 2222223333222 355555666777889999988887654 4554 4555544320 10 1 2
Q ss_pred cCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 393 VKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 393 ~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|..+.. .++.++|++.. .+.+.++++++.|++.....
T Consensus 406 ~gW~L~~-------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~~ 444 (470)
T PLN02263 406 RRWQLAC-------QGNIAHVVVMPSVTIEKLDYFLKELVEKRSTW 444 (470)
T ss_pred cceEEcc-------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhhh
Confidence 3555543 12469999975 48899999999998876644
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-11 Score=122.38 Aligned_cols=300 Identities=13% Similarity=0.127 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEE-----
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVP----- 170 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~----- 170 (483)
+....+|+.+.+... ..+.+++++++++++..++.... ....+|+...-+|.+....+....|.....
T Consensus 93 ~~~~~la~~l~~~~p-----~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 167 (428)
T PRK12389 93 ELEIEFAKMLKEAIP-----SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPD 167 (428)
T ss_pred HHHHHHHHHHHHhCC-----CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCC
Confidence 445556666654321 24689999999999999887542 223678888888887654333221211100
Q ss_pred ---eecCC-CCCc---ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 171 ---VVCDS-SNDF---KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 171 ---v~~~~-~~~~---~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
++... .+-. ..|++.+++.+.+. +.++.+|++.....-.|.+. +.+.+++|.++|++||+++|.||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t 244 (428)
T PRK12389 168 SAGVPKSIAQEVITVPFNDIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT 244 (428)
T ss_pred CCCCCCcccCceEEcCCCCHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 00000 0000 12688888888642 23566666654466667655 67789999999999999999999998
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-----hcCCCChHHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-----SFGLVSSQTQHL 317 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-----~~~~~s~~~q~~ 317 (483)
++ -.. . ........ . .+| + -+++|.+| .|+.+|.+++ ++++.+.+.... ..+..++++.++
T Consensus 245 G~-Rt~-~--~~a~~~~g-v---~PD--i--vt~gK~lg-gG~Pi~av~~-~~~i~~~~~~~~~~~~~~T~~gnpl~~Aa 310 (428)
T PRK12389 245 AF-RFM-Y--GGAQDLLG-V---EPD--L--TALGKIIG-GGLPIGAYGG-RKDIMEQVAPLGPAYQAGTMAGNPASMAA 310 (428)
T ss_pred cc-ccC-c--chhhHHhC-C---CCC--e--eeechhhc-CCCceeEEeE-HHHHHhhhccCCCcccccCCccCHHHHHH
Confidence 74 221 1 11111111 0 223 2 28899998 8999999988 566666553211 112356666555
Q ss_pred HHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeec-CCceEEEeeecCch-hh---c---cChHHH
Q 011570 318 IATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLK-SNAGLFLWMDLHHL-LK---E---QTYEAE 382 (483)
Q Consensus 318 ~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~-~~~g~f~~~~l~~~-~~---~---~~~~~~ 382 (483)
+.+.|+ +.+ ..+++++.-+++.+.|++ +++.... ..+|++ -+.+... .. . ......
T Consensus 311 ala~L~~l~~~~--------l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g~~-gi~~~~~~~~~~~~~~~~~~~~~ 381 (428)
T PRK12389 311 GIACLEVLQQEG--------VYEKLDRLGAMLEEGILEAAEKHGITITINRLKGAL-TVYFTDEKVTNYDQAERSDGEAF 381 (428)
T ss_pred HHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcEE-EEEEeCCCCCChhhhcccCHHHH
Confidence 555443 222 122233333444444433 4432222 233433 3444211 00 0 001112
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
..+...++ ++||.+.+.. .+.+.+++. +++++++++++++.+++++
T Consensus 382 ~~~~~~l~-~~Gv~~~~~~------~~~~~~~l~-~t~e~id~~~~~l~~~l~~ 427 (428)
T PRK12389 382 GKFFKLML-NQGINLAPSK------YEAWFLTTA-HTEEDIEETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHH-HCCcEeecCC------CCCeeecCC-CCHHHHHHHHHHHHHHHHh
Confidence 35566666 4699998752 112455554 6999999999999998864
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-11 Score=122.95 Aligned_cols=312 Identities=13% Similarity=0.107 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.+....+|+.+.+... -..+.+++++++++++..++..... +| .+|+...-+|++.........|..
T Consensus 72 ~~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~ 147 (443)
T PRK07483 72 TEPAEALADRLVAAAP----AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAW 147 (443)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcc
Confidence 3455566666654321 1346899999999999988865421 33 568888888876543222211211
Q ss_pred -----------EEEeecCCCCCccc-----C--------HHHHHHHHHHHHhcCCceeEEEEeCCCC-CCcC-CCCHHHH
Q 011570 168 -----------LVPVVCDSSNDFKV-----T--------MEALEAAYEKAQESNIRIKGVLITNPSN-PLGT-FLDRETL 221 (483)
Q Consensus 168 -----------~~~v~~~~~~~~~~-----d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~N-PtG~-~~~~~~l 221 (483)
+..++... .|.- + ++.+++.+... ...++.+|++..... -.|. ..+.+.+
T Consensus 148 ~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~iAAvivEPiqg~~gG~~~~~~~fl 223 (443)
T PRK07483 148 RREPFAPLLIEAHHVSPCY--AYREQRAGESDEAYGQRLADELEAKILEL--GPDTVAAFVAETVVGATAGAVPPVPGYF 223 (443)
T ss_pred cccccCCCCCCCEEeCCCc--cccccccCCCHHHHHHHHHHHHHHHHHhc--CCCceEEEEEeCcccCcCCeEeCCHHHH
Confidence 11122110 0110 0 24455544321 123566666653342 2354 5578899
Q ss_pred HHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHH
Q 011570 222 KDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSC 300 (483)
Q Consensus 222 ~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~ 300 (483)
+++.++|++||+++|.||+..++...+ .+.....+.- .+| |+ +++|.+| .|+ .+|.+++ .+++.+.
T Consensus 224 ~~lr~lc~~~gillI~DEV~tGfGRtG--~~~a~~~~gv-----~PD--iv--~~gK~l~-gG~~Pi~av~~-~~~i~~~ 290 (443)
T PRK07483 224 KRIREVCDRYGVLLILDEVMCGMGRTG--TLFACEEDGV-----APD--LV--TIAKGLG-AGYQPIGAVLA-SDRIYDA 290 (443)
T ss_pred HHHHHHHHHhCCEEEEecceeCcccCc--HHHHHhhcCC-----CCC--ee--eehhhhc-cCccccEEEEE-cHHHHHH
Confidence 999999999999999999998742222 2222222211 223 22 6799998 896 9999999 5556555
Q ss_pred HHHh------hhcCCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhh----cCCceeecCCceEEEe
Q 011570 301 ARKM------SSFGLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLS----QVGIGCLKSNAGLFLW 367 (483)
Q Consensus 301 ~~~~------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~----~~gi~~~~~~~g~f~~ 367 (483)
+... ...+..++++.+++.+.|+ +++. .+..++.-+++.+.|+ ++++......-|+++-
T Consensus 291 ~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l--------~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~g 362 (443)
T PRK07483 291 IADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGL--------LANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVG 362 (443)
T ss_pred HhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEE
Confidence 5321 1112356666666555553 2222 2222233333333333 3332222334456777
Q ss_pred eecCchhhcc-----ChHHHHHHHHHHHHhcCeEeeCCCC-CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 368 MDLHHLLKEQ-----TYEAEMALWRVIINEVKLNVSPGSS-FHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 368 ~~l~~~~~~~-----~~~~~~~~~~~Ll~~~gV~v~pg~~-f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+++....... .......+...+++ +||++.+... ......+.+||.... ++++++++++++|.+++.+..
T Consensus 363 ie~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 363 VELVADRATKAPFDPALKLHARIKREAMA-RGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred EEEeecccccCCCCchhhHHHHHHHHHHH-CCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7764211000 00112356666664 6999986421 101113579998876 599999999999999997654
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-12 Score=131.33 Aligned_cols=172 Identities=14% Similarity=0.176 Sum_probs=118.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+..+..|+.++ .....+++||+|.++.+++.+++.+||.|+++..||-+....+... |++.+.++...
T Consensus 197 i~eAe~~aA~~fg---------Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLils-ga~PVYl~P~~ 266 (713)
T PRK15399 197 HLEAEEYIARTFG---------AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMS-DVVPIWLKPTR 266 (713)
T ss_pred HHHHHHHHHHHhC---------CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHc-CCeeEEecccc
Confidence 3455666666655 3457899999999999999999999999999999999988888775 99999887432
Q ss_pred CCCcc----cCH-----HHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEE-EEccccccCc
Q 011570 176 SNDFK----VTM-----EALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHL-VCDEIYAATV 245 (483)
Q Consensus 176 ~~~~~----~d~-----~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~i-I~Deay~~~~ 245 (483)
..|+ ++. +.++++|++.... ++++++++++|+. -|.+++ +++|++.| |+.+ ++||||+...
T Consensus 267 -n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhgah~ 337 (713)
T PRK15399 267 -NALGILGGIPRREFTRDSIEEKVAATTQA-QWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWVPYT 337 (713)
T ss_pred -cccCCcCCCChhhccHHHHHHHHHhCCCc-CCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccchhhh
Confidence 2232 344 8888888764321 3457899999954 799999 55566666 4545 6999997642
Q ss_pred -cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEe
Q 011570 246 -FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYS 292 (483)
Q Consensus 246 -~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~ 292 (483)
|.. .+.+...+... ......++++.|.+|.+ +|+.-+ ++..
T Consensus 338 ~F~p--~~~~~sam~~~--~~aD~~i~~tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 338 HFHP--IYQGKSGMSGE--RVPGKVIFETQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred hcCc--ccCCcChhhCC--CCCCeeeeeeeehhccc--cccchheeeee
Confidence 222 12211111110 00123456689999997 677666 5555
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-11 Score=121.35 Aligned_cols=316 Identities=15% Similarity=0.093 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++.... .+| .+|+...-+|.+.........|..
T Consensus 73 ~~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~ 148 (447)
T PRK06917 73 SEPAEKLAKKLSDLSP----GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPL 148 (447)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcc
Confidence 3455566666654421 123579999999999999987652 123 679998988877654332221211
Q ss_pred -----------EEEeecCCCC--Cccc--------CHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCcC-CCCHHHHHHH
Q 011570 168 -----------LVPVVCDSSN--DFKV--------TMEALEAAYEKAQESNIRIKGVLITNPS-NPLGT-FLDRETLKDI 224 (483)
Q Consensus 168 -----------~~~v~~~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~P~-NPtG~-~~~~~~l~~i 224 (483)
+..++.+... .+.- +++.+++.+... ...++.+|++.... |--|. +.+.+.++++
T Consensus 149 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~l 226 (447)
T PRK06917 149 RRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI--GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVI 226 (447)
T ss_pred ccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEeccccCcCceecCCHHHHHHH
Confidence 1112211100 0001 234556655431 01256666665333 33444 5578899999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||+..++.-.+ .......+.- .+| + -+++|.+| .|+ .+|.+++ .+++.+.+..
T Consensus 227 r~lc~~~g~llI~DEv~tGfGRtG--~~~a~~~~gv-----~PD--i--~~~gK~l~-~G~~Pi~a~~~-~~~i~~~~~~ 293 (447)
T PRK06917 227 KEICDHYDILFIADEVMTGLGRTG--AMFAMEHWGV-----EPD--I--MTLGKGLG-AGYTPIAATVV-SDRVMEPILR 293 (447)
T ss_pred HHHHHHcCCEEEEechhhCcCccc--chhhHHhcCC-----CCC--E--EEeeehhc-cCCcceEEEEE-cHHHHHHHhc
Confidence 999999999999999998632222 2122221211 223 2 37799998 885 9999999 4566665532
Q ss_pred hh------hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCch
Q 011570 304 MS------SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHL 373 (483)
Q Consensus 304 ~~------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~ 373 (483)
.. ..+..++++.+++.+.|+--. + ....+.+.+.-+++.+.|++ .++......-|+++.+++...
T Consensus 294 ~~~~~~~~~T~~gnpl~~aaa~a~l~~l~---~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~~~ 368 (447)
T PRK06917 294 GSRSIMSGHTLSANPLSAATALAVLEYME---K--HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFVAD 368 (447)
T ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHH---H--CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEecc
Confidence 11 112356666666655553211 0 11222333333444444433 343333334456777776321
Q ss_pred hhc-----cChHHHHHHHHHHHHhcCeEeeCCCC-CCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 374 LKE-----QTYEAEMALWRVIINEVKLNVSPGSS-FHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 374 ~~~-----~~~~~~~~~~~~Ll~~~gV~v~pg~~-f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
... ........+...++ ++||++.++.. ......+.+|++... ++++++++++++|.+++++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 369 KKTKQPFSKSQAVASELISVAA-KNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred CCcCCCCcchhHHHHHHHHHHH-hCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 100 00011235666666 46999987421 111123579999865 59999999999999999876
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-12 Score=126.42 Aligned_cols=283 Identities=10% Similarity=0.081 Sum_probs=165.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEe-CChhHHHHHHHHHhcCCCCeEEEeCCCCcChH-HHHhhh-cCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMS-GGATGAHETVAFCLADPGDAFLVPTPYYPGFD-RDLRWR-TGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it-~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~-~~~~~~-~G~~~~~v 171 (483)
+.+.|+.++++++ ++ ..+|+++ +++|.+++.++..++.+ +.+.+..=.|+.-. ..+... .+.++..+
T Consensus 43 ~~~~r~~l~~l~~--------~~~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~ 113 (361)
T TIGR01366 43 VGRVREGLAELFS--------LPDGYEVILGNGGATAFWDAATFGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIV 113 (361)
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEECCchhHHHHHHHHhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEE
Confidence 4567777888776 33 3478886 55999999999998743 33333333343222 222221 02245555
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.++.. .++.+ + ++++++|.+++-+|.||.+.+.+ +| ++++|+++|+|.+.+ +.. .+
T Consensus 114 ~~~~~~--~~~~~-----~------~~~~~lV~~~h~et~tG~~~pi~---~I---~~~~g~~~iVDavqs---~g~-~~ 170 (361)
T TIGR01366 114 TADPGS--APEPQ-----A------DPGVDVIAWAHNETSTGVAVPVR---RP---EGSDDALVVIDATSG---AGG-LP 170 (361)
T ss_pred ecCCCC--CCCCc-----c------CCCCCEEEEcccCCccceecccc---cc---cccCCCeEEEEcCcc---ccC-CC
Confidence 544321 23321 1 24789999999999999999954 44 478999999999986 333 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-----------------hh---cCCCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-----------------SS---FGLVS 311 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-----------------~~---~~~~s 311 (483)
.++.. ..+++.|..|.+|.+|- ++.++.+++.+.+ +... .. ....+
T Consensus 171 -idv~~-----------~D~~~~s~~K~lg~~~G-l~~~~~s~~~~~~-~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~ 236 (361)
T TIGR01366 171 -VDIAE-----------TDVYYFAPQKNFASDGG-LWLAIMSPAALER-IEAIAASGRWVPEFLSLPTAVDNSLKNQTYN 236 (361)
T ss_pred -CCHHH-----------CCEEEEEchhhcCCCCc-eEEEEECHHHHhh-hhcccCCCCCCchhhhHHHHHhccccCCCCC
Confidence 33332 23577899999997752 5555664443322 2210 00 01122
Q ss_pred hHHHH---HHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCC-ceeecC-C---ceEEEeeecCchhhccChHH
Q 011570 312 SQTQH---LIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVG-IGCLKS-N---AGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 312 ~~~q~---~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~-~---~g~f~~~~l~~~~~~~~~~~ 381 (483)
++... ++.++++ ++.+. ++...++.++..+++.+.|.+.+ ++.+.. . ......+.+++..+
T Consensus 237 tp~i~~i~~l~~al~---~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~~g~~------ 307 (361)
T TIGR01366 237 TPAIATLALLAEQID---WMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFVDDID------ 307 (361)
T ss_pred CchHHHHHHHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECCCccC------
Confidence 22222 2233332 22221 34555677788888888888886 454421 1 11112233333222
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++...| +++||.+.++.. ..+.+.+|+++.. .+.++++.++++|++++++
T Consensus 308 ~~~v~~~L-~~~gI~i~~~~~--~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 308 AATVAKIL-RANGIVDTEPYR--KLGRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHH-HHCCCeeccCcc--ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 22566666 456999987642 2235689999976 6999999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-11 Score=123.34 Aligned_cols=310 Identities=14% Similarity=0.128 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcE-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQ------- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~------- 167 (483)
.+.+..+|+.+.+... -..+.|+++++++++...++.... ....+|+...-+|.+.........|..
T Consensus 94 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 169 (451)
T PRK06062 94 NDARSEAARLIAERAP----GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDT 169 (451)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCC
Confidence 4455666666654421 124689999999999999987642 223678888888877654332221211
Q ss_pred ----EEEeecCC--CCCcc--cC-------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhc
Q 011570 168 ----LVPVVCDS--SNDFK--VT-------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEK 231 (483)
Q Consensus 168 ----~~~v~~~~--~~~~~--~d-------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~ 231 (483)
+..++.+. ...|. -| ++.+++.++.. ...++.+|++..-..-.|.+. +.+.+++|.++|++|
T Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~ 247 (451)
T PRK06062 170 GRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH 247 (451)
T ss_pred CCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc
Confidence 11222111 00110 12 56666666421 113566666554455557664 788899999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHHh---hh-
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARKM---SS- 306 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~~---~~- 306 (483)
|+++|.||++.+ |+..........+.- .+| +-+|+|.+| .|+ .+|.+++. +++.+.+... ..
T Consensus 248 g~lLI~DEV~tG--fGRtG~~~a~~~~gv-----~PD----i~t~gK~lg-gG~~Pigav~~~-~~i~~~~~~~~~~~~~ 314 (451)
T PRK06062 248 GIVLIADEVMAG--FGRTGKWFAIEHFGV-----VPD----LITFAKGVN-SGYVPLGGVAIS-EAIAATFADRPYPGGL 314 (451)
T ss_pred CCEEEeeccccC--CCcCcHHHHHHhcCC-----CCC----eeeechhhh-cCCcCcEEEEEc-HHHHHHhccCCCCCCC
Confidence 999999999987 433111111111111 223 337899998 784 99999984 5666665321 11
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH-HHHHHhhhc----CCceeecCCceEEEeeecCchhhcc----
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH-KAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQ---- 377 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~---- 377 (483)
.+..++++.+++.+.|+-- ++ ....++.++.- +++.+.|++ .++......-|+++-+++.......
T Consensus 315 T~~gnpl~~Aaa~a~L~~l---~~--~~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~~~~~~~~~~~ 389 (451)
T PRK06062 315 TYSGHPLACAAAVATINAM---EE--EGIVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELVADRETREPLA 389 (451)
T ss_pred CCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEcccccccCCCc
Confidence 1234566665555554321 10 01111122221 223333322 3332222233566666664210000
Q ss_pred C----hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 378 T----YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 378 ~----~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
. ......+...++ ++||.+.+. .+.+||+... ++++++++++++|.++++...
T Consensus 390 ~~~~~~~~~~~~~~~l~-~~Gvl~~~~-------~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 390 PYGASSAAMAAVKAACK-ERGLLPFVN-------GNRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred ccchhhHHHHHHHHHHH-HCCcEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 0 011235666666 569987642 2469998865 599999999999999997654
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-11 Score=123.35 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCCCeEEEeCCCCcChHHHHhhhcCc---
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPGDAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
.+....+|+.+.+..+ ...+.+++++++++++..++.... .+..+|+....+|.+.........+.
T Consensus 85 ~~~~~~la~~L~~~~p----~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~ 160 (428)
T PRK07986 85 HPPAIELCRKLVAMTP----QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNS 160 (428)
T ss_pred CHHHHHHHHHHHhhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchh
Confidence 3455666666654422 234689999999999999887543 12367999999887643222111121
Q ss_pred ----------EEEEeecCCCC---Cc-ccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhh
Q 011570 167 ----------QLVPVVCDSSN---DF-KVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINE 230 (483)
Q Consensus 167 ----------~~~~v~~~~~~---~~-~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~ 230 (483)
.++.++..... .| .-|++.+++.++. .+.++.+|++... +.-.|. +.+.+.+++|.++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~---~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~ 237 (428)
T PRK07986 161 MHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAA---HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDR 237 (428)
T ss_pred hhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHh---CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHH
Confidence 01122211100 01 1256677777753 2235555555542 444565 4467899999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-----
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM----- 304 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~----- 304 (483)
||+++|+||++.++...+ . ........- .+| |+ +++|.+| .| +.+|.+++ ++++.+.+...
T Consensus 238 ~g~lLI~DEv~tG~GrtG-~-~fa~~~~gv-----~PD--i~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~~ 304 (428)
T PRK07986 238 EGILLIADEIATGFGRTG-K-LFACEHAGI-----APD--IL--CLGKALT-GGTMTLSATLT-TREVAETISNGEAGCF 304 (428)
T ss_pred cCCEEEEeccccCCccCC-C-eeeecccCC-----CCC--EE--Eechhhh-CCcccCcchhc-hHHHHHHhhcCCCCcc
Confidence 999999999997642222 2 111111110 222 33 6899997 78 58888888 56666665431
Q ss_pred --hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccC
Q 011570 305 --SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQT 378 (483)
Q Consensus 305 --~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~ 378 (483)
...+..++++.+++.+.|+.- ++ ....++++++-+++.+.|+++ .+.-. ..-|+++-+.+....
T Consensus 305 ~~~~T~~g~p~~~aaa~a~L~~i---~~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~v-Rg~Gl~~~ve~~~~~---- 374 (428)
T PRK07986 305 MHGPTFMGNPLACAVANASLSLL---ES--GDWQQQVAAIEAQLREELAPLRDAPMVADV-RVLGAIGVVETTRPV---- 374 (428)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEeE-eccceEEEEEeCCcc----
Confidence 111224566655555544321 10 012233344444455545443 12112 223567777775321
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
....+...++ ++||.+.+. .+.+|+.... ++++++++++++|.+++++.
T Consensus 375 --~~~~~~~~l~-~~Gl~~~~~-------g~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 424 (428)
T PRK07986 375 --NMAALQRFFV-EQGVWIRPF-------GKLIYLMPPYIILPEQLQRLTAAVNRAVQDE 424 (428)
T ss_pred --cHHHHHHHHH-HCCcEEEec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 1225666666 569999763 1479998766 59999999999999998653
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-11 Score=121.75 Aligned_cols=306 Identities=11% Similarity=0.082 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+.+... ...+.|++++++++++..++.... . + ..+|+....+|.+.........|.
T Consensus 92 ~~~~~la~~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~ 167 (445)
T PRK09221 92 PLAFELAERLAELAP----GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNN 167 (445)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhh
Confidence 344456666654321 124689999999999999886542 1 1 257898898887654322111111
Q ss_pred ---------EEEEeecCC---CCCccc--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHH
Q 011570 167 ---------QLVPVVCDS---SNDFKV--------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIV 225 (483)
Q Consensus 167 ---------~~~~v~~~~---~~~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~ 225 (483)
.+..+|.+. ...+.. ..+.+++.++.. ...++.+|++.......|.+. +.+.+++|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~--~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~ 245 (445)
T PRK09221 168 RKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH--DASTIAAVIVEPMAGSAGVLVPPKGYLQRLR 245 (445)
T ss_pred hhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEecccCCCCcccCCHHHHHHHH
Confidence 112222211 000111 134566666431 113566666654466677754 677899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH-
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK- 303 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~- 303 (483)
++|++||+++|.||++.++...+ . ......+.- .+| + -++||.++ .| +.+|.+++ ++++.+.+..
T Consensus 246 ~lc~~~g~llI~DEV~tG~GRtG-~-~~~~~~~gv-----~PD--i--~~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~ 312 (445)
T PRK09221 246 EICDKHGILLIFDEVITGFGRLG-A-AFAAERFGV-----TPD--I--ITFAKGLT-NGAIPMGAVIA-SDEIYDAFMQG 312 (445)
T ss_pred HHHHHcCCEEEEeehhhCCCcCc-h-hhHHHhcCC-----CCC--E--EEeccccc-cCcccceeeEE-cHHHHHhhccC
Confidence 99999999999999997632222 2 112211110 223 2 38899997 66 78999888 4556555421
Q ss_pred -------hhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce--eecCCceEEEeeecCc
Q 011570 304 -------MSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIG--CLKSNAGLFLWMDLHH 372 (483)
Q Consensus 304 -------~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~--~~~~~~g~f~~~~l~~ 372 (483)
... .+..++++.+++.+.|+.- ++ ....++.++.-+++.+.|+++ +.. .....-|++.-+++..
T Consensus 313 ~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i---~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~ 387 (445)
T PRK09221 313 PEYAIEFFHGYTYSAHPVACAAGLATLDIY---RE--EDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAP 387 (445)
T ss_pred cccccccccccCCCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEec
Confidence 011 1224555555544444321 11 112334444555555555543 211 1112234566666643
Q ss_pred hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 373 LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 373 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
...... .....+.+.++ ++||.+.++ .+.+||+... ++++++++++++|++++++
T Consensus 388 ~~~~~~-~~~~~~~~~~~-~~Gv~~~~~-------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 388 RPGAPG-ARGYEAFMKCF-EKGLLVRYT-------GDTIALSPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred cccccc-chHHHHHHHHH-HCCeEEeec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 111111 11235666666 459998753 2479999865 5999999999999999865
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-11 Score=122.13 Aligned_cols=311 Identities=9% Similarity=0.069 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCCC-eEEEeCCCCcChHH-HHhhhcCcE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPGD-AFLVPTPYYPGFDR-DLRWRTGVQ 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd-~Vlv~~P~y~~~~~-~~~~~~G~~ 167 (483)
.+....+++.+.+..+ -..+.+++++++++|+..++.... +++. .|+....+|.+... .+.. .|.+
T Consensus 97 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~-s~~~ 171 (460)
T PRK12403 97 HPAVIELSELLFSLLP----GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATAL-GGMK 171 (460)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhc-CCCc
Confidence 3445555555544322 123689999999999999987763 2333 35555666765432 2221 1221
Q ss_pred -----------EEEeecCC--CCCccc--------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHH
Q 011570 168 -----------LVPVVCDS--SNDFKV--------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIV 225 (483)
Q Consensus 168 -----------~~~v~~~~--~~~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~ 225 (483)
+..+|.+. ..++.+ +.+.+++.+.+. ...++.+|++.....-.|.+ .+.+.+++|.
T Consensus 172 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr 249 (460)
T PRK12403 172 FMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL--GAENVAGFVAEPFQGAGGMIFPPESYWPEIQ 249 (460)
T ss_pred cccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccCCCCCccCCHHHHHHHH
Confidence 12222110 000111 124455554321 11245555554335555765 4678899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHHh
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARKM 304 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~~ 304 (483)
++|++||+++|.||++.++ +..........+.- .+| |+ +++|.+| .|. .+|.+++ .+.+.+.+...
T Consensus 250 ~lc~~~g~lLI~DEV~tGf--GRtG~~~a~e~~gv-----~PD--iv--~~gK~lg-gG~~Piga~v~-~~~i~~~~~~~ 316 (460)
T PRK12403 250 RICRQYDVLLCADEVIGGF--GRTGEWFAHEHFGF-----EPD--TL--SIAKGLT-SGYVPMGGLVL-SKRIAEALVEQ 316 (460)
T ss_pred HHHHHcCCEEEEeccccCC--CcCchhhhhhhcCC-----CCC--eE--EEccccc-ccccceEEEEE-CHHHHHHHhcC
Confidence 9999999999999999764 33122122122211 222 33 5899998 784 9998888 46666655321
Q ss_pred ------hhcCCCChHHHHHHHHhcC---ChhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh
Q 011570 305 ------SSFGLVSSQTQHLIATMLS---DDQFVEKFIA-ESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374 (483)
Q Consensus 305 ------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~-~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~ 374 (483)
...+..++++.+++.+.|+ +++. .+... +.-+++ ++.+.+...+.++......-|+++.+++....
T Consensus 317 ~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l-~~~~~~~~g~~l---~~~L~~l~~~~~~i~~vrG~Gl~~gie~~~~~ 392 (460)
T PRK12403 317 GGVFAHGLTYSGHPVAAAVAIANLKALRDEGV-VTRVKDDTGPYL---QRCLREVFGDHPLVGEVQGAGLVAALQFAEDK 392 (460)
T ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH---HHHHHHHHhcCCCEEeEeecceEEEEEEccCc
Confidence 1112245666665555543 2221 11111 111122 22233333334443334445677777774311
Q ss_pred hc-cChH----HHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 375 KE-QTYE----AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 375 ~~-~~~~----~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.. .... ....+...++ +.||.+.+. .+.+|++... ++++++++++++|.+++++..+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~-------~~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 393 ATRKRFANENDLAWRCRTIGF-EEGVIIRST-------LGRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred cccccccchhHHHHHHHHHHH-hCCEEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10 0000 0112334445 569998742 1358999876 4999999999999999988754
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=123.28 Aligned_cols=301 Identities=10% Similarity=0.083 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+..... ...+.|++++++++++..++.... ++| .+|+....+|.+.........|.
T Consensus 87 ~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~ 162 (429)
T PRK06173 87 EPAVELAQKLLEILP----PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG 162 (429)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchh
Confidence 334445555543321 234689999999999999886643 133 57888888887742111111010
Q ss_pred ----------EEEEeecCCC---CCcc-cCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCC-CCHHHHHHHHHHHhh
Q 011570 167 ----------QLVPVVCDSS---NDFK-VTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTF-LDRETLKDIVSFINE 230 (483)
Q Consensus 167 ----------~~~~v~~~~~---~~~~-~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~-~~~~~l~~i~~~a~~ 230 (483)
.+..+|.+.. ..+. -+++.+++.+.. .+.++.+|++... ..-.|.+ .+.+.++++.++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~---~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~ 239 (429)
T PRK06173 163 MHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ---KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQ 239 (429)
T ss_pred hhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh---CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHH
Confidence 0112221110 0000 135666666653 2346777666642 5656765 688899999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH------
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK------ 303 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~------ 303 (483)
||+++|.||++.+ |+..........+.- .+| |+ +|+|.++ .| +.+|-+++ .+++.+.+..
T Consensus 240 ~g~llI~DEv~tG--~GrtG~~~a~~~~gv-----~PD--iv--~~gK~l~-gG~~p~~a~~~-~~~i~~~~~~~~~~~~ 306 (429)
T PRK06173 240 YGVLLIFDEIATG--FGRTGKLFALEHAGV-----VPD--IM--CIGKALT-GGYLTLSATIT-TEAIAQTICSGEAKCF 306 (429)
T ss_pred cCCeEEecchhcC--CCcCCcchHHHhcCC-----CCC--EE--Eeehhhh-CCccccceEEe-cHHHHHHHhcCCCCcc
Confidence 9999999999966 433122112221110 223 33 4899997 78 47888888 4556555431
Q ss_pred -hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee--cCCceEEEeeecCchhhccCh
Q 011570 304 -MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL--KSNAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 304 -~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~--~~~~g~f~~~~l~~~~~~~~~ 379 (483)
....+..++++.+++.+.|+- +++ ....+.++++-+++.+.|++. +.... ...-|+++-+.+....
T Consensus 307 ~~~~T~~g~p~~~aaa~a~l~~---i~~--~~~~~~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~----- 376 (429)
T PRK06173 307 MHGPTFMANPLACAIAAESIRL---LLE--SPWQQNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPV----- 376 (429)
T ss_pred ccCCCCCcCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcc-----
Confidence 111122455555555554432 111 112334445555566666543 33222 1133567777775321
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
....+...++ +.||.+.+.. +.+||.... ++++++++++++|.+++.+.
T Consensus 377 -~~~~i~~~l~-e~Gi~v~~~g-------~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 426 (429)
T PRK06173 377 -NMATLQPRFV-EHGIWVRPFG-------KLVYIMPPFIISPDELSQLTSGLLRVLKQE 426 (429)
T ss_pred -cHHHHHHHHH-HCCeEEEecC-------CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 1235666666 4699997631 379999977 59999999999999999764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-11 Score=131.62 Aligned_cols=311 Identities=12% Similarity=0.118 Sum_probs=173.0
Q ss_pred HHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhhcC-----c----
Q 011570 99 FRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWRTG-----V---- 166 (483)
Q Consensus 99 Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~~G-----~---- 166 (483)
....+++.+.+... -..+.+++++++++++..+++. +.+ ...|+...-+|.+.........+ .
T Consensus 625 ~~~elae~L~~~~p----~~~~~v~f~~SGsEA~e~AlklAr~~tg-r~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~ 699 (972)
T PRK06149 625 AVAEFSERLAALAP----DGLDTVFLVNSGSEANDLAIRLAWAASG-RRDVVSVLEAYHGWTVATDAVSTSIADNPQALE 699 (972)
T ss_pred HHHHHHHHHHHhCC----CCcCEEEEeCCchHHHHHHHHHHHHhcC-CCeEEEEeCCCCCcChhHhhhcCCccccccccC
Confidence 44445555543321 1246899999999999999873 433 35677777777654322110000 0
Q ss_pred ----EEEEeecCC--CCCcc-cC-----HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCc
Q 011570 167 ----QLVPVVCDS--SNDFK-VT-----MEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 167 ----~~~~v~~~~--~~~~~-~d-----~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~ 233 (483)
.+..++... ...|. .+ .+.+++.++.....+.++.+|++... ++-...+.+.+.++++.++|++||+
T Consensus 700 ~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~ 779 (972)
T PRK06149 700 TRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGG 779 (972)
T ss_pred CCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCC
Confidence 112222211 11121 11 24555555443333345655555433 4443455678889999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---hcCCC
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---SFGLV 310 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---~~~~~ 310 (483)
++|.||++.++...+ ..+.......- .+| |+ +++|.+| .|+.+|.+++ .+++.+.+.... +....
T Consensus 780 llI~DEV~tGfGRtG-~~~~a~e~~gv-----~PD--iv--t~gK~lg-~G~Pl~av~~-~~~i~~~~~~~~~~~sT~~g 847 (972)
T PRK06149 780 VCIADEVQVGYGRLG-HYFWGFEQQGV-----VPD--II--TMAKGMG-NGHPLGAVIT-RREIAEALEAEGYFFSSTGG 847 (972)
T ss_pred EEEEEeehhcCCccC-ccchhhhhcCC-----CCC--EE--Eeccccc-CCeeeEEEEE-cHHHHhhhccCCcccCCCCC
Confidence 999999997642232 22223222211 222 32 8899998 8999999999 566666554211 11235
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhc--cChHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKE--QTYEAEMA 384 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~ 384 (483)
++++.+++.+.|+--. + +...+..++.-+++.+.|++ .++......-|+++-+++...... ........
T Consensus 848 nP~~~aaala~L~~i~--~---e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~~~~~~~~~~~~~~~~ 922 (972)
T PRK06149 848 SPVSCRIGMAVLDVLR--E---EKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELVRDRQTLEPATEETAA 922 (972)
T ss_pred CHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEecCcccCCCChHHHHH
Confidence 6666666555553211 0 01122222222334443433 343323334467777877421100 11112335
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++..+++ +||.+.+.. ...+.+||.... ++++++++++++|.+++.+
T Consensus 923 i~~~l~~-~Gvl~~~~g----~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 923 ICDRLLE-LGVIMQPTG----DHLNILKIKPPLCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred HHHHHHh-CCeEEeecC----CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 6777775 599998742 124679998865 5999999999999999864
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.6e-11 Score=133.31 Aligned_cols=312 Identities=11% Similarity=0.042 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC---------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG--------- 165 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G--------- 165 (483)
.+....+|+.+.+... -..+.+++++++++|+..+++... .....|+....+|.+.........+
T Consensus 662 ~~~~~~lAe~L~~~~p----~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~ 737 (1013)
T PRK06148 662 HDAIVAYAERLTATLP----DGLTVAFFVNSGSEANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGK 737 (1013)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCC
Confidence 3445556665554321 123679999999999999986642 2235788888888765432111111
Q ss_pred -----cEEEEeecCCCCCccc-C-------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhc
Q 011570 166 -----VQLVPVVCDSSNDFKV-T-------MEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEK 231 (483)
Q Consensus 166 -----~~~~~v~~~~~~~~~~-d-------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~ 231 (483)
...++.|......|.. + .+.+++.+......+.++.+|++.....-.|. +.+.+.++++.++|+++
T Consensus 738 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~ 817 (1013)
T PRK06148 738 GRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA 817 (1013)
T ss_pred CCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh
Confidence 1111111001111221 1 23455555432223345666655533333454 55788899999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh---hhcC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM---SSFG 308 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~---~~~~ 308 (483)
|+++|.||+..++...+ ..+.....+.- .+| | -+++|.+| .|+.+|.+++ .+++.+.+..- ...+
T Consensus 818 g~llI~DEVqtGfGRtG-~~~~a~e~~gv-----~PD--i--vt~gK~lg-gG~Plgav~~-~~ei~~~~~~g~~~~~Tf 885 (1013)
T PRK06148 818 GGVCIADEVQVGFGRVG-SHWWAFETQGV-----VPD--I--VTMGKPIG-NGHPMGAVVT-TREIADSFDNGMEYFNTF 885 (1013)
T ss_pred CCEEEEEecccCCCCCC-CcchhhhhcCC-----Ccc--e--eeeccccc-CCcceEEEEE-cHHHHhhccCCCccccCC
Confidence 99999999997742232 21222222211 222 2 27799998 8999999999 56666654321 1112
Q ss_pred CCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhcc--Ch
Q 011570 309 LVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQ--TY 379 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~--~~ 379 (483)
..++++.+++.+.|+ +++. .+.. ++.-+++.+.|++ +++......-|+++-+++....... ..
T Consensus 886 ~gnpla~aaa~a~L~~i~~e~l-~~~~-------~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~~~~~~~~~~~ 957 (1013)
T PRK06148 886 GGNPVSCAIGLAVLDIIEDEDL-QRNA-------LEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELVTDRKTKAPAT 957 (1013)
T ss_pred CCCHHHHHHHHHHHHHHhhccH-HHHH-------HHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEecCCccccCccH
Confidence 256666666555543 2221 2222 3333333333333 3332233344677778775321111 11
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.....+...++ ++||++.+... ..+.+||.... ++++++++++++|.+++.+.
T Consensus 958 ~~~~~i~~~~~-~~Gvl~~~~g~----~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 958 AIARYVKNGAR-ERGILIGTEGP----HDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHHHH-hCCeEEeccCC----CCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence 11235666666 46999976421 24679999876 59999999999999998753
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-11 Score=108.92 Aligned_cols=283 Identities=16% Similarity=0.181 Sum_probs=186.7
Q ss_pred CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCC-CcChH-HHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY-YPGFD-RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~-y~~~~-~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
+--.++...++.++.+++..+++|||.|++...+ |+.-. +..+. .|+++..++.+. +-.++++.+.+++.++
T Consensus 68 ~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r-~ga~V~~v~~~~--G~~~~le~i~~~lsqh--- 141 (385)
T KOG2862|consen 68 AQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARR-YGAEVDVVEADI--GQAVPLEEITEKLSQH--- 141 (385)
T ss_pred CceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHh-hCceeeEEecCc--ccCccHHHHHHHHHhc---
Confidence 3456666777899999999999999999987654 54433 44455 499999997765 4468899999999874
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
++++|++++-...||..-+. +..+-++|++|++++++|.+-+ .++ .+|.- . ++...+....-
T Consensus 142 --~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~~~lllVD~VaS---lgg-t~F~m-D---------ewgVDvaytgS 203 (385)
T KOG2862|consen 142 --KPKAVFVTHGDSSTGVLQDL--LAISGELCHKHEALLLVDTVAS---LGG-TEFEM-D---------EWGVDVAYTGS 203 (385)
T ss_pred --CCceEEEEecCccccccchH--HHHHHHHhhcCCeEEEEechhh---cCC-cccee-h---------hhcccEEEecc
Confidence 89999999999999998662 3445567889999999999976 444 33321 1 23444555666
Q ss_pred ccccCCC-CceEEEEEecChHHHHHHHHh--------------hhcCCC-----------ChHHHHHHHHhcCChhHHHH
Q 011570 277 SKDMGFP-GFRVGIIYSYNDQVVSCARKM--------------SSFGLV-----------SSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 277 SK~~g~~-GlRiG~li~~~~~l~~~~~~~--------------~~~~~~-----------s~~~q~~~~~~l~~~~~~~~ 330 (483)
-|++|.| |+ +-+.. ++...+.++.. ..+|.+ +....+.+.++|.. ..++
T Consensus 204 QKaL~aP~GL--siisf-S~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~--I~ee 278 (385)
T KOG2862|consen 204 QKALGAPAGL--SIISF-SDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALAL--IAEE 278 (385)
T ss_pred hhhcCCCCCc--ceeec-CHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHH--HHHH
Confidence 8999854 43 34555 34333333321 112222 22222333333332 2234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
-+++..++.++..+++...|+++|++..... ..-.-.+.+|...+.+ ++..++..+++|.+.-|- ++.
T Consensus 279 GL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp~gvDw~------dVv~~~~~~~~vei~ggl--g~~ 350 (385)
T KOG2862|consen 279 GLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVPYGVDWK------DVVAYAMSHYVVEIGGGL--GPT 350 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecCCCCCHH------HHHHHHHHhcCEEecccc--CCC
Confidence 4667777788888999999999887644211 1112345566554433 677888877777776554 333
Q ss_pred CCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhh
Q 011570 407 NPGWFRVCFAN--MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 407 ~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+..+||++.. .+-+.++..++.|+.++.+..
T Consensus 351 ~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 351 VGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred cccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 45689999833 378899999999988887653
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.5e-11 Score=121.02 Aligned_cols=311 Identities=12% Similarity=0.064 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhhhCCCC-CcCCCcEEEeCChhHHHHHHHHHhcC-------C-CCeEEEeCCCCcChHHHHhhhcCc--
Q 011570 98 EFRNAVAKFMGKVRGNRI-TFDPDRIVMSGGATGAHETVAFCLAD-------P-GDAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~-~~~~~~i~it~G~~~al~~~~~~l~~-------~-gd~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
+.+..+|+.+.+...... .-+.+.|++++++++++..++..... + ..+|+...-+|.+.........|.
T Consensus 107 ~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~ 186 (472)
T PRK08742 107 EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPL 186 (472)
T ss_pred HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcc
Confidence 445666666654321000 00235899999999999998876421 2 267999998887765333222121
Q ss_pred ----------EEEEeecCCCC--Cccc--------CHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcC-CCCHHHHHHH
Q 011570 167 ----------QLVPVVCDSSN--DFKV--------TMEALEAAYEKAQESNIRIKGVLITN-PSNPLGT-FLDRETLKDI 224 (483)
Q Consensus 167 ----------~~~~v~~~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~-~~~~~~l~~i 224 (483)
.+..+|..+.. .+.. +++.+++.+.. ...++.+|++.. ..+-.|. +.+.+.++++
T Consensus 187 ~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~iAAvI~EPviqg~gG~~~~p~~fl~~l 263 (472)
T PRK08742 187 YRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ---SPGEICALILEPRLQCAGGMRMHHPAYLRRA 263 (472)
T ss_pred cccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccccCCCcccCCHHHHHHH
Confidence 11222221100 0111 24555665542 223566666553 2555676 5578889999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||+..++...+ . +.....+.- .+| ++ +++|.+| .| +.+|.+++ .+++.+.+..
T Consensus 264 r~lc~~~gillI~DEV~TGfGRtG-~-~~a~e~~gv-----~PD-iv---~~gKgl~-gG~~Plaav~~-~~ei~~~~~~ 330 (472)
T PRK08742 264 RELCDAHGAFLIADEIATGFGRTG-T-LFACEQAGV-----MPD-LL---CLSKGLT-GGFLPLSAVLA-TQQLYDAFLD 330 (472)
T ss_pred HHHHHHcCCEEEEechhhCCCCCc-c-chHHHhcCC-----CCC-EE---EEccccc-CCCCCcceeec-cHHHHHHhhc
Confidence 999999999999999998753333 2 222222211 223 22 5699998 88 49999998 5666555431
Q ss_pred h--------hhcCCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCc
Q 011570 304 M--------SSFGLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHH 372 (483)
Q Consensus 304 ~--------~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~ 372 (483)
. ...+..++++.+++.+.|+ +++. .+..++.-++++ .+.+.+.++.+......-|+++-+++..
T Consensus 331 ~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l-~~~~~~~g~~l~----~~~~~~~~~~~i~dvRG~Gl~~giel~~ 405 (472)
T PRK08742 331 DSRERAFLHSHSYTGNPLACAAALATLDIFADDDV-IARNQPTAARMT----QLAAQIGEHPHVADVRQAGMVVAFELTR 405 (472)
T ss_pred cCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHH----HHHHHHhcCCCeeeEeccceEEEEEecc
Confidence 0 1112246666665555543 2221 122222222222 2333344444322233446777787753
Q ss_pred hhhccCh-----HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 373 LLKEQTY-----EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 373 ~~~~~~~-----~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.....+. .....+...++ +.||.+.+. .+.|||.... ++++++++++++|.+++++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~-------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 406 GGNKRTPFPPAARVGLHAYRAAL-ARGVVLRPL-------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred CccccccCCchhHHHHHHHHHHH-HCCeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2111100 01124555666 469999763 1479999977 59999999999999999764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-11 Score=132.91 Aligned_cols=310 Identities=14% Similarity=0.133 Sum_probs=185.3
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe-CChhHHHHHHHHHh----cCCCC----eEEEeCCCCcChHHHHhhhc
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS-GGATGAHETVAFCL----ADPGD----AFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it-~G~~~al~~~~~~l----~~~gd----~Vlv~~P~y~~~~~~~~~~~ 164 (483)
+|..++...+.+|+.+.+| . +++.+. +|++++....+.++ .++|| +|++++..|+.....+...
T Consensus 538 qG~l~~i~e~q~~l~eltG----~--d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~- 610 (954)
T PRK05367 538 AGYRELIDQLEAWLAEITG----Y--DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA- 610 (954)
T ss_pred HHHHHHHHHHHHHHHHHHC----C--CCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC-
Confidence 4567888888899988877 2 345554 45555554433333 35665 5999999998877777775
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|.+++.++.+.+ ..+|+++|++++.+. +.++.+|++++|++-.+...+ +++|+++|+++|+++++|.++...
T Consensus 611 G~~vv~v~~d~~--G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~a 682 (954)
T PRK05367 611 GMKVVVVACDEN--GNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEET---IREICEIVHEHGGQVYLDGANMNA 682 (954)
T ss_pred CCEEEEECCCCC--CCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHcCCEEEEECcChhh
Confidence 999999998754 479999999998642 235788899999876443456 889999999999999999999532
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHHHHhh--------hcCCCC-
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCARKMS--------SFGLVS- 311 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~~~~~--------~~~~~s- 311 (483)
...- .+.. ..+-.++..|.+|+|+ ..|--+|++.+. +.+...+.... ..+.++
T Consensus 683 l~~l----~~pg---------~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr-~~l~p~lpg~~v~~~~~~~~~g~v~t 748 (954)
T PRK05367 683 QVGL----ARPG---------DIGADVSHLNLHKTFCIPHGGGGPGVGPIGVK-AHLAPFLPGHPVQIAGGETGIGAVSA 748 (954)
T ss_pred ccCC----CChh---------hcCCCEEEecCcccCCCCcCCCCCceEEEeec-ccccccCCCCccCcCCCCCCcCcchh
Confidence 1111 1111 1234467789999974 234447888873 33322211100 011122
Q ss_pred -hHHHHHHH----HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceE--EEeeecCchhhccChHHHH
Q 011570 312 -SQTQHLIA----TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGL--FLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 312 -~~~q~~~~----~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~--f~~~~l~~~~~~~~~~~~~ 383 (483)
+..|..++ .++...+ .+-+++..+....+.+++.+.|.+. .+.+..+.+.. =+.++++........ ...
T Consensus 749 a~~g~al~~~~a~~yi~~~G--~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~-~~~ 825 (954)
T PRK05367 749 APFGSASILPISWMYIRMMG--AEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKESTGI-TVD 825 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccccCCC-CHH
Confidence 22221111 1111111 1223444444446778888888664 33332221110 012233211111011 134
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+++++|. ++|+....- .|. .++.+||++.. .+.++++.++++|..+..+..+
T Consensus 826 di~krL~-d~G~~~~t~-~~p--v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 826 DIAKRLI-DYGFHAPTM-SFP--VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred HHHHHHH-HCCCeEeec-CCc--cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888886 569875442 243 36789998865 5899999999999988777655
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-11 Score=121.49 Aligned_cols=308 Identities=13% Similarity=0.081 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcE-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQ------- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~------- 167 (483)
.+....+++.+.+..+ -..+.+++++++++++..++.... ....+|+....+|.+.........|..
T Consensus 112 ~~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~ 187 (459)
T PRK06082 112 NETAIECAEKLTEIAG----GELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMG 187 (459)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCC
Confidence 3455566666654432 123689999999999999886542 223678888888876543222111211
Q ss_pred -----EEEeecCCC--CCcc-c------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCc
Q 011570 168 -----LVPVVCDSS--NDFK-V------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 168 -----~~~v~~~~~--~~~~-~------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~ 233 (483)
+..+|.... ..|. . +++.+++.+.+ ..++.+|++....+..+.+.+.+.++++.++|++||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~----~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~ 263 (459)
T PRK06082 188 PLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK----EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNV 263 (459)
T ss_pred CCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc----CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 112221110 0011 0 12446665542 1256555555445544557788899999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH--hhhcCCC
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK--MSSFGLV 310 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~--~~~~~~~ 310 (483)
++|.||+..++ +....+.....+.- .+| ++ +++|.+| .| +.+|.+++. +.+...... ....+..
T Consensus 264 llI~DEV~tG~--GRtG~~fa~e~~gv-----~PD--iv--~~gKgl~-gG~~P~~av~~~-~~i~~~~~~~~~~~T~~g 330 (459)
T PRK06082 264 LLIIDEIPNGM--GRTGEWFTHQAYGI-----EPD--IL--CIGKGLG-GGLVPIAAMITK-DKYNTAAQISLGHYTHEK 330 (459)
T ss_pred EEEEechhhCC--CccchhhHhHhhCC-----CCC--EE--Eeccccc-CCCCcceEEEEc-HHHHhhccCCCCCCCCCc
Confidence 99999999874 32122112122211 223 32 4899998 77 599999984 444433211 1111235
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhc--cChHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKE--QTYEAEMA 384 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~ 384 (483)
++++.+++.+.|+-- ++ ....+++.++-+++.+.|++ +++......-|+++.+++...... ........
T Consensus 331 npl~~aaa~a~L~~l---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~ 405 (459)
T PRK06082 331 SPLGCAAALATIEVI---EQ--EGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEA 405 (459)
T ss_pred CHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHH
Confidence 666655555554321 10 11222333333444444433 343333334456777777531111 11111234
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+...++ ++||.+.+. ..+.+|++... +++++++++++++.+++.+.
T Consensus 406 ~~~~~~-~~Gvl~~~~------~~~~i~~~Ppl~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 406 VLYRCL-NNGLSFKVS------QGNVIQLSPPLIITREELTQALAILEEAIAKI 452 (459)
T ss_pred HHHHHH-hCCCEEEec------CCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence 556666 569998763 13579999865 59999999999999999775
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-11 Score=122.13 Aligned_cols=310 Identities=13% Similarity=0.053 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-CC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-PG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.+.+..+|+.+.+... -..+.+++++++++++..++.... . +| .+|+...-+|.+.........|..
T Consensus 91 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~ 166 (460)
T PRK06105 91 HGPVIDLAEKLVAMAP----VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPN 166 (460)
T ss_pred CHHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcc
Confidence 3444556666654422 234689999999999999987742 1 22 578888888866543221111111
Q ss_pred -----------EEEeecCCCCCcc-----------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHH
Q 011570 168 -----------LVPVVCDSSNDFK-----------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDI 224 (483)
Q Consensus 168 -----------~~~v~~~~~~~~~-----------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i 224 (483)
+..++.+....+. ...+++++.+... ...++.+|++.....-.|.+ .+.+.++++
T Consensus 167 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~--~~~~iAavIvEPiqg~gG~~~~~~~yl~~l 244 (460)
T PRK06105 167 NHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE--GPDTIAAFIGEPVMGAGGVIVPPKTYWEKI 244 (460)
T ss_pred cccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc--CCCceEEEEEccccCCCCCccCCHHHHHHH
Confidence 1112211100000 0134566665421 11356666555445555765 588889999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||++.++...+ . +.....+.- .+| | -++||.+| .| +.+|.+++ ++.+.+.+..
T Consensus 245 r~lc~~~~~llI~DEv~tG~GRtG-~-~f~~~~~~v-----~PD--i--~~~gK~lg-gG~~P~~av~~-~~~i~~~~~~ 311 (460)
T PRK06105 245 QAVLRKYDILLVADEVICGFGRTG-N-MFGCETFGI-----KPD--I--LVMSKQLS-SSYQPLSAVLM-NEKVYDPIAD 311 (460)
T ss_pred HHHHHHcCCeEEEeccccCCCcCc-h-hhhHHhcCC-----CCC--e--eeeecccc-cCcccceEEEE-cHHHHHHHhc
Confidence 999999999999999997642232 2 222222211 223 2 27899998 66 69999999 5666665532
Q ss_pred h---------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc---CCceeecCCceEEEeeecC
Q 011570 304 M---------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ---VGIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 304 ~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~gi~~~~~~~g~f~~~~l~ 371 (483)
. ...+..++++.+++.+.|+-- ++ ....+..++.-+++.+.|++ +++......-|++.-+++.
T Consensus 312 ~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i---~~--~~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~ 386 (460)
T PRK06105 312 ESGKIGTFGHGFTASGHPVAAAVALENLAII---EE--RDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELV 386 (460)
T ss_pred ccccCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEe
Confidence 1 111235666666555544321 10 11122233333334443433 3332223334567667763
Q ss_pred chhhcc-C----hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 372 HLLKEQ-T----YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 372 ~~~~~~-~----~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
...... . ......+...++ ++||.+.+. .+.+|++... ++++++++++++|.+++++..
T Consensus 387 ~~~~~~~~~~~~~~~a~~i~~~~~-~~Gvl~~~~-------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 387 ADKATKTPFEPPGKVGARANAAAH-EHGVISRAM-------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred cCcccCCCCCchhHHHHHHHHHHH-HCCeEEEec-------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 211100 0 011235566666 569999763 1379999876 599999999999999997653
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.9e-11 Score=121.32 Aligned_cols=306 Identities=11% Similarity=0.079 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHH---HhhhcCcEEEEee
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRD---LRWRTGVQLVPVV 172 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~---~~~~~G~~~~~v~ 172 (483)
+.+..+|+.+.+..+ ...+.+.+++++++++..++.... ....+|+...-+|.+.... .....+......+
T Consensus 93 ~~~~~la~~L~~~~~----~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~ 168 (433)
T PRK00615 93 EQEILFAEELFSYLG----LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLT 168 (433)
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCC
Confidence 345556666654422 223689999999999999887642 1235788888888775421 0001011000000
Q ss_pred ----cCC--CC----CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 173 ----CDS--SN----DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 173 ----~~~--~~----~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
... .. .| -|++.+++.+.+. +.++.+|++.......|.+. +.+.+++|.++|++||+++|.||++
T Consensus 169 ~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~ 244 (433)
T PRK00615 169 HLVDTDLAHPLTLSLPY-NDFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV 244 (433)
T ss_pred CCCCCCCCCCCeEeCCC-CCHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 000 00 01 2678888888642 23455555544355567755 5778999999999999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-----cCCCChHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-----FGLVSSQTQH 316 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-----~~~~s~~~q~ 316 (483)
.++ ..+ .. .. ..... . .+| ++ +|+|.+| .|+.+|++++ ++++.+.+..... .+..++++.+
T Consensus 245 tG~-R~G-~~-ga-~~~~g-v---~PD--i~--~~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~T~~g~p~~~a 310 (433)
T PRK00615 245 TGF-RVA-QG-GA-AAIYH-V---KPD--IT--VYGKILG-GGLPAAAVVA-HKSIMDHLAPEGTIFQAGTLSGNPLAMA 310 (433)
T ss_pred ccc-ccc-Hh-HH-HHhcC-C---CCC--eE--EEccccc-CCcceeeeee-cHHHHhhhcCCCCcccCCCCcccHHHHH
Confidence 764 233 21 11 12111 0 222 32 5899998 7899999999 5666665532111 1123555555
Q ss_pred HHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh----hc---cChHHHHHHH
Q 011570 317 LIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL----KE---QTYEAEMALW 386 (483)
Q Consensus 317 ~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~----~~---~~~~~~~~~~ 386 (483)
++.+.|+ +++. .+.+.++-+.+ ++.+.+.+.+.|+.+.....|.++.+.+.... .. ........+.
T Consensus 311 a~la~L~~i~~~~~-~~~~~~~g~~l---~~~l~~~~~~~g~~v~~~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (433)
T PRK00615 311 AGKASINLCREQGF-YTQLSTLEQNF---LSPIEEMIRSQGFPVSLVRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFY 386 (433)
T ss_pred HHHHHHHHHhcccH-HHHHHHHHHHH---HHHHHHHHHHcCCCeEEEeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHH
Confidence 5444443 2221 12222222222 22234444444554332224567777774321 00 0112234677
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+++ +||.+.|... . .+ =++.. .++++++++++++.+++++.
T Consensus 387 ~~l~~-~Gv~~~~~~~-~----~~-~ls~~-ht~~did~~~~a~~~~~~~~ 429 (433)
T PRK00615 387 QSAFS-KGVYLSPSPF-E----AS-FLSSA-HSMENLDYAQNVLIDSLEKV 429 (433)
T ss_pred HHHHH-CCeeecCccc-c----cc-ceecC-CCHHHHHHHHHHHHHHHHHH
Confidence 77775 5999887542 1 11 14444 59999999999999999874
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-10 Score=120.31 Aligned_cols=308 Identities=12% Similarity=0.075 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+.+... ...+.+++++++++++..++.... .+| .+|+....+|.+.........|.
T Consensus 99 ~~~~~lae~L~~~~p----~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~ 174 (460)
T PRK06916 99 VPSILLAEKLIEVVP----EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLF 174 (460)
T ss_pred HHHHHHHHHHHHhCC----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCccc
Confidence 344555555554321 123689999999999999887643 133 67899999887754332221121
Q ss_pred ---------EEEEeecCCC--CCcc--------cCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcCC-CCHHHHHHHH
Q 011570 167 ---------QLVPVVCDSS--NDFK--------VTMEALEAAYEKAQESNIRIKGVLITN-PSNPLGTF-LDRETLKDIV 225 (483)
Q Consensus 167 ---------~~~~v~~~~~--~~~~--------~d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~~-~~~~~l~~i~ 225 (483)
.+..+|.... ..+. -+++.+++.++. .+.++.+|++.- ...-.|.+ .+.+.++++.
T Consensus 175 ~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr 251 (460)
T PRK06916 175 HQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE---KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLR 251 (460)
T ss_pred ccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcccCCHHHHHHHH
Confidence 1122222110 0011 134556666542 234676666664 35556765 5888999999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH-
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK- 303 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~- 303 (483)
++|+++|+++|.||+..++...+ .+.....+.- .+| |+ +++|.+| .| +.+|.+++ .+++.+.+..
T Consensus 252 ~lc~~~g~llI~DEV~TG~GRtG--~~~a~~~~gv-----~PD--iv--~~gK~l~-gG~~Pi~av~~-~~ei~~~~~~~ 318 (460)
T PRK06916 252 NLCTKYNVLFITDEVATGFGRTG--KMFACEHENV-----TPD--IM--TAGKGLT-GGYLPIAITVT-TDEIYNAFYGD 318 (460)
T ss_pred HHHHHcCCEEEeechhhCCCcCc--hhhHHHhcCC-----CCC--ee--eeehhhh-cCccccceeee-cHHHHHHhhcc
Confidence 99999999999999997742222 2222222211 223 22 6799998 88 59999999 4556554421
Q ss_pred -------hhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---CceeecCCceEEEeeecCc
Q 011570 304 -------MSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GIGCLKSNAGLFLWMDLHH 372 (483)
Q Consensus 304 -------~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi~~~~~~~g~f~~~~l~~ 372 (483)
... .+..++++.+++.+.|+- +++ ....+++++.-+++.+.|+++ .+......-|+++-+++..
T Consensus 319 ~~~~~~~~~~~T~~gnpl~~aaa~a~l~~---l~~--~~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~ 393 (460)
T PRK06916 319 YEEQKTFFHGHSYTGNPLGCAVALANLEL---YEK--TNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVK 393 (460)
T ss_pred ccccCccccCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeec
Confidence 011 122466666555555432 110 112223333334444444432 2211222335666676642
Q ss_pred hhhcc-----ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 373 LLKEQ-----TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 373 ~~~~~-----~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
..... .......+...++ ++||++.+.. +.+|+.... ++++++++++++|.+++++..
T Consensus 394 ~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~g-------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 394 NKETKEPFEWTERVGVQVCKRSR-ELGMLTRPLG-------NTIVFMPPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred ccccccCCCchhhHHHHHHHHHH-HCCeEEEecC-------CEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence 11100 0011235566666 4699997631 368988665 599999999999999997653
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-10 Score=120.16 Aligned_cols=321 Identities=10% Similarity=0.044 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+.+..+|+.+..... -..+.|++++++++++..++.... . + ..+|+...-+|.+....+....|.
T Consensus 94 ~~~~~~lae~L~~~~p----~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~ 169 (466)
T PRK07036 94 NAPAAELAAKLAELAP----GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAA 169 (466)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCc
Confidence 4556667776665421 224689999999999999887641 1 2 267888888887754332211111
Q ss_pred ----------EEEEeecCCC--CCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHH
Q 011570 167 ----------QLVPVVCDSS--NDFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIV 225 (483)
Q Consensus 167 ----------~~~~v~~~~~--~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~ 225 (483)
.+..++.+.. ..+..+ ++.+++.+.. ....++.+|++.....-.|.+ .+.+.++++.
T Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr 247 (466)
T PRK07036 170 DRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS--LGADNIAAFIAEPILGSGGVIVPPPGYHARMR 247 (466)
T ss_pred ccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH--cCCCceEEEEEeCCcCCCCCccCCHHHHHHHH
Confidence 1222222110 011111 2334444432 112356666666445556764 5778899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM 304 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~ 304 (483)
++|++||+++|.||+..++...+ .+........ . .+| |+ +++|.+| .| +.+|.+++ .+++.+.+...
T Consensus 248 ~lc~~~g~llI~DEV~tGfGRtG--~~~~~~~~~g-v---~PD--iv--t~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~ 315 (466)
T PRK07036 248 EICRRYDILYISDEVVTGFGRLG--HFFASEAVFG-I---QPD--II--TFAKGLT-SGYQPLGAVII-SERLLDVISGP 315 (466)
T ss_pred HHHHHcCCEEEEeechhCCCcCc--hhhhhhhhcC-C---CCC--EE--EEccccc-cCccccEEEEE-cHHHHHHHhcc
Confidence 99999999999999997742222 1222221111 0 223 22 7799998 88 59999998 56666655321
Q ss_pred --------h-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh---hcCCceeecCCceEEEeeecCc
Q 011570 305 --------S-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGL---SQVGIGCLKSNAGLFLWMDLHH 372 (483)
Q Consensus 305 --------~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L---~~~gi~~~~~~~g~f~~~~l~~ 372 (483)
. ..+..++++.+++.+.|+.- ++ ....+..++.-+++.+.| .++++......-|+++.+++..
T Consensus 316 ~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i---~~--~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~ 390 (466)
T PRK07036 316 NAKGNVFTHGFTYSGHPVACAAALKNIEIM---ER--EGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVA 390 (466)
T ss_pred cCcCcccccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEcc
Confidence 1 01224666666655554321 10 111222233333333333 3334333333446777787743
Q ss_pred hhhcc-----ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhccCccch
Q 011570 373 LLKEQ-----TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAKVPNKK 446 (483)
Q Consensus 373 ~~~~~-----~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~~~~~~ 446 (483)
..... .......+...++ ++||++.+.. +.+|++... ++++++++++++|.+++++..+ ..++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~~-------~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~---~~~~ 459 (466)
T PRK07036 391 DKGSKALLPEDIAIGQRIDRHCQ-ERGLLVRPLE-------HLCVLSPPLIITRAQIDEIVAILRAAIEETAD---ELAA 459 (466)
T ss_pred CccccCCCCchhHHHHHHHHHHH-HCCcEEeecC-------CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence 21111 0011234566666 5699987631 368898765 5999999999999999987633 3455
Q ss_pred hhccc
Q 011570 447 KLCWQ 451 (483)
Q Consensus 447 ~~~~~ 451 (483)
++-|.
T Consensus 460 ~~~~~ 464 (466)
T PRK07036 460 HGLWR 464 (466)
T ss_pred ccccC
Confidence 55564
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-11 Score=121.87 Aligned_cols=301 Identities=14% Similarity=0.090 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhh-cCcEEE----
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWR-TGVQLV---- 169 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-~G~~~~---- 169 (483)
.+....+|+.+.+.. ..+.+.++++++++...+++... ...++|+...-+|.+........ .+.+..
T Consensus 114 ~~~~~~lAe~l~~~~------~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~ 187 (453)
T PRK07046 114 SEDAAWVGEELARRF------GLPYWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPG 187 (453)
T ss_pred CHHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCC
Confidence 345555666665432 25789999999999998886642 23467898888888864322110 010000
Q ss_pred --Eee--cCC---CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 170 --PVV--CDS---SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 170 --~v~--~~~---~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.++ ... .-.|. |++.+++.+.. .++.+|++.-...-.|.+ .+.+.++++.++|++||+++|.||+.
T Consensus 188 ~~g~~~~~~~~~~~~~~n-d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~ 261 (453)
T PRK07046 188 LLGQVHDLTATTRVVEFN-DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETH 261 (453)
T ss_pred CCCCCccccCceEeeCCC-CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccc
Confidence 000 000 00121 78888887731 256655554334334544 45678999999999999999999998
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh------h-----hcCCC
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM------S-----SFGLV 310 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~------~-----~~~~~ 310 (483)
. +-.+- .. ...... . .+| ++ +++|.+| .|+.+|.+++ ++++.+.+... . .-+..
T Consensus 262 t-fr~g~-Gg---~~~~~g-v---~PD--i~--t~gK~lg-gG~Pi~av~g-~~~i~~~~~~~~~~~~~~~~~~~~T~~g 326 (453)
T PRK07046 262 T-ISSGP-GG---YTRAHG-L---EPD--FL--VVGKPIA-GGVPCAVYGF-SAELAERAQAAKASAPPGHSGIGTTLSA 326 (453)
T ss_pred c-CccCC-cc---hhHHhC-C---Ccc--ce--eehhhhc-CCCcceeeee-hHHHHHHHhhccccCCCCCceeCCCCcc
Confidence 6 22211 11 111111 0 222 22 6899998 8999999998 56666665421 0 01224
Q ss_pred ChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCc-hh-hc------cCh
Q 011570 311 SSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHH-LL-KE------QTY 379 (483)
Q Consensus 311 s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~-~~-~~------~~~ 379 (483)
++++.+++.+.|+ +++. .+...+.-+.+ ++.+.+.+.+.++.+....-|..+.+.+.. .. +. ...
T Consensus 327 npl~~aa~~a~L~~l~~~~~-~~~~~~~g~~l---~~~L~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~ 402 (453)
T PRK07046 327 NALAMAAMRATLAEVMTEAA-YAHMLALAARL---AAGLRAVIARHGLPWHVTRVGARVEFQFAPTPPRNGAEAAAALDP 402 (453)
T ss_pred cHHHHHHHHHHHHHHhcccH-HHHHHHHHHHH---HHHHHHHHHhCCCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccCH
Confidence 5666555544443 3222 12222222222 233333334456543322222333444321 10 00 011
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.....++..+++ +||.+.|.. +.++++.. +++++++++++++.+++++.
T Consensus 403 ~~~~~~~~~~~~-~Gv~~~~~~-------~~~~~~p~-~t~~did~~~~~~~~~l~~~ 451 (453)
T PRK07046 403 ELEAALHLYLLN-RGVLITPFH-------NMMLVCPA-TTAADVDRLVAAFDACLGEL 451 (453)
T ss_pred HHHHHHHHHHHH-CCCEEeccc-------CcEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 112345666665 599987621 34788876 79999999999999998754
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-10 Score=119.85 Aligned_cols=308 Identities=12% Similarity=0.038 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C-C-CCeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D-P-GDAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~-~-gd~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+.+..+|+.+.+... ...+.+++++++++++..++.... . + ..+|+...-+|.+.........|.
T Consensus 89 ~~~~~~lae~L~~~~p----~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~ 164 (466)
T PRK07030 89 HEPVIELSERLVKITP----PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVAL 164 (466)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCcc
Confidence 3455556666654321 234689999999999999987652 1 2 357888888887754332221121
Q ss_pred ----------EEEEeecCCCC--Cccc--------CHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcC-CCCHHHHHHH
Q 011570 167 ----------QLVPVVCDSSN--DFKV--------TMEALEAAYEKAQESNIRIKGVLITN-PSNPLGT-FLDRETLKDI 224 (483)
Q Consensus 167 ----------~~~~v~~~~~~--~~~~--------d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~-~~~~~~l~~i 224 (483)
.+..+|..... .+.. +++.+++.+.+ .+.++.+|++.- ...-.|. +.+.+.++++
T Consensus 165 ~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~---~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~l 241 (466)
T PRK07030 165 FTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE---HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLL 241 (466)
T ss_pred ccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh---CCCceEEEEEecccccCCCcccCCHHHHHHH
Confidence 11222221100 0111 24556666642 234666666654 2444566 4577889999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||+..++...+ . +.....+.- .+| ++ +++|.+| .| +.+|.+++ ++++.+.+..
T Consensus 242 r~lc~~~g~llI~DEV~TGfGRtG-~-~~a~~~~gv-----~PD-iv---~~gKgl~-gG~~Pi~av~~-~~ei~~~~~~ 308 (466)
T PRK07030 242 REACDRYGVHLIHDEIAVGFGRTG-T-MFACEQAGI-----RPD-FL---CLSKALT-GGYLPLAAVLT-TDTVYQAFYD 308 (466)
T ss_pred HHHHHHcCCEEEEeehhhCcCccc-c-chHHHhcCC-----CCC-EE---eeehhcc-CCcccceEEEe-cHHHHHHHhc
Confidence 999999999999999998743333 2 222222211 223 22 5699998 89 59999999 5666655421
Q ss_pred ---------hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc---CCceeecCCceEEEeeecC
Q 011570 304 ---------MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ---VGIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 304 ---------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~gi~~~~~~~g~f~~~~l~ 371 (483)
....+..++++.+++.+.|+--. + +...++.++.-+++.+.|++ .........-|+++-+++.
T Consensus 309 ~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~--~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~ 383 (466)
T PRK07030 309 DYPTLRAFLHSHSYTGNPLACAAALATLDIFE--Q---DNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMV 383 (466)
T ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEec
Confidence 01112356676666655543211 0 01112222233333333333 3221222334577777774
Q ss_pred chhhc-----cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 372 HLLKE-----QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 372 ~~~~~-----~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..... ........+...++ ++||.+.+. .+.+|+.... ++++++++++++|.+++++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~i~~~~~-~~Gvl~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 384 QDKASKTPYPWQERRGLKVYQHAL-ERGALLRPL-------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred cCccccccCcchhHHHHHHHHHHH-HCCeEEEec-------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 31110 00011125666666 469998763 1369998765 59999999999999999887
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-10 Score=119.34 Aligned_cols=312 Identities=14% Similarity=0.047 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+.+..+|+.+.+..+ +-..+.+++++++++++..++..... +| .+|+...-+|.+.........|.
T Consensus 85 ~~~~~~lae~L~~~~~---~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~ 161 (449)
T PRK07481 85 HPRAIELSYELIDMFA---PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTV 161 (449)
T ss_pred CHHHHHHHHHHHHhcC---CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcc
Confidence 3455566666654431 01246899999999999998876421 23 57888888887754322211111
Q ss_pred ----------EEEEeecCC--CCCcc-cCHHHHHHHHHHH----H--hcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHH
Q 011570 167 ----------QLVPVVCDS--SNDFK-VTMEALEAAYEKA----Q--ESNIRIKGVLITNPSNPLGTF-LDRETLKDIVS 226 (483)
Q Consensus 167 ----------~~~~v~~~~--~~~~~-~d~~~l~~~i~~~----~--~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~ 226 (483)
.+..++.+. ...|. -|++.+++.+.+. - ....++.+|++.....-.|.+ .+.+.++++.+
T Consensus 162 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~ 241 (449)
T PRK07481 162 FRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVRE 241 (449)
T ss_pred cccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHH
Confidence 112222111 01122 2444443332211 0 112356666665445555764 57778999999
Q ss_pred HHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-
Q 011570 227 FINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM- 304 (483)
Q Consensus 227 ~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~- 304 (483)
+|++||+++|.||+..++...+ . ......+.- .+| |+ +++|.+| .| +.+|.+++ .+++.+.+...
T Consensus 242 lc~~~g~llI~DEV~tGfGRtG-~-~~a~~~~gv-----~PD--iv--~~gKgl~-gG~~Pi~av~~-~~~i~~~~~~~~ 308 (449)
T PRK07481 242 VCDRHGILLIADEVVTGFGRTG-S-WFGSRGWGV-----KPD--IM--CLAKGIT-SGYVPLGATMV-NARIADAFEANA 308 (449)
T ss_pred HHHHcCCEEEEeehhhCcCcCc-h-hhHhhhcCC-----CCC--EE--EEeeccc-CCCcCceEEEE-cHHHHHHHhccC
Confidence 9999999999999998742222 2 112111110 223 22 6699998 78 59999999 55666655321
Q ss_pred -------h-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCc
Q 011570 305 -------S-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHH 372 (483)
Q Consensus 305 -------~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~ 372 (483)
. ..+..++++.+++.+.|+--. + ....++.++.-+++.+.|++ +++......-|+++.+++..
T Consensus 309 ~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~ 383 (449)
T PRK07481 309 DFGGAIMHGYTYSGHPVACAAALATLDIVV--R---EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVA 383 (449)
T ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHH--h---hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecc
Confidence 1 112246666666555543211 0 11122223333334444433 34333333445777777743
Q ss_pred hhhcc---C--hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 373 LLKEQ---T--YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 373 ~~~~~---~--~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..... . ......+...++ +.||++.+.. +.+||+... ++++++++++++|.+++++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~-~~Gvl~~~~g-------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 384 DKATREPIDPSKGYANAVADVAR-ENGVLVRPSG-------TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred cccccCCCCchhHHHHHHHHHHH-hCCeEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 11000 0 111234556666 4699997641 258999765 59999999999999998754
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-11 Score=120.24 Aligned_cols=265 Identities=18% Similarity=0.145 Sum_probs=161.5
Q ss_pred CCcEEEeCChhHHHHHHHHHhc-CCC-CeEEEeCCCCcChHHHHhhhcC-------cE-----EEEeecCCCCCcccCHH
Q 011570 119 PDRIVMSGGATGAHETVAFCLA-DPG-DAFLVPTPYYPGFDRDLRWRTG-------VQ-----LVPVVCDSSNDFKVTME 184 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~-~~g-d~Vlv~~P~y~~~~~~~~~~~G-------~~-----~~~v~~~~~~~~~~d~~ 184 (483)
.+.+++++++++++..++.... .+| ++|+....+|.+.........+ .. +..+| |. |++
T Consensus 81 ~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~~-d~~ 153 (364)
T PRK04013 81 YEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------FN-DVE 153 (364)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec------CC-CHH
Confidence 3689999999999999987652 245 8899999988775433322111 11 11122 11 577
Q ss_pred HHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 185 ALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 185 ~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
.+++.+.+ ++++|++.......|.. .+.+.++++.++|++||+++|.||+..++ ..+ .+.....+.-
T Consensus 154 ~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG--~~~a~~~~gv--- 221 (364)
T PRK04013 154 AAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG--KFLAIEHYKV--- 221 (364)
T ss_pred HHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCC--chhHHHhcCC---
Confidence 78877742 67777776555555654 46788999999999999999999999875 333 2223222211
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
. +.++ +++|.+| .|+.+|.++...+ +.. . .....+..++.+.+++.+.|+--.. ++.+++.++.
T Consensus 222 --~-PDiv---~~gK~lg-gG~P~~a~~~~~~-~~~-~-~~~~T~~gnp~~~aaa~a~l~~i~~-~~l~~~~~~~----- 285 (364)
T PRK04013 222 --E-PDIV---TMGKGIG-NGVPVSLTLTNFD-VER-G-KHGSTFGGNPLACKAVAVTLRILRR-ERLVEKAGEK----- 285 (364)
T ss_pred --C-CCEE---Eeccccc-CCceeEEEEeccc-ccC-C-CcCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH-----
Confidence 2 2222 6699998 7899999988543 311 1 1111123566666665555432110 0111221111
Q ss_pred HHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHH
Q 011570 344 KAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRT 422 (483)
Q Consensus 344 ~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~ 422 (483)
+ ..+.. .+-.....-|+++-+++... ...+...++ ++||.+.+. +.+.+|+.... +++++
T Consensus 286 --l-~~l~~-~~v~~vRG~Gl~~gve~~~~--------~~~i~~~~~-~~Gll~~~~------g~~vlr~~Ppl~it~~~ 346 (364)
T PRK04013 286 --F-IEIKG-ERVVTTRGRGLMIGIVLKKP--------VGKYVEELQ-NRGYLVHTA------GQRVIRLLPPLIISKDT 346 (364)
T ss_pred --H-HHhcc-CcceeeeeCcEEEEEEeCCc--------HHHHHHHHH-hCCcEEeeC------CCCEEEEeCCcccCHHH
Confidence 1 12221 11111223467888888531 124566666 469998753 23679999976 59999
Q ss_pred HHHHHHHHHHHHHHh
Q 011570 423 MEIALSRITSFMLKN 437 (483)
Q Consensus 423 l~~~l~~L~~~l~~~ 437 (483)
+++++++|.+++++.
T Consensus 347 i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 347 MEEAKSAIEGVINDI 361 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998753
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-11 Score=131.16 Aligned_cols=317 Identities=16% Similarity=0.170 Sum_probs=189.0
Q ss_pred cccccCCC---CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCC----CeEEEeCCCC
Q 011570 85 KGIAIFQD---YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPG----DAFLVPTPYY 153 (483)
Q Consensus 85 ~~~~~Y~~---~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~g----d~Vlv~~P~y 153 (483)
.+.+.|.+ .+|+.++...+.+++.+..| .+.-.+...+|+ ++....+.++ ..+| ++|+++.-.|
T Consensus 527 ~t~hPyqp~e~sQG~lq~i~elq~~l~eLtG----md~~Sl~p~sGA-~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saH 601 (954)
T PRK12566 527 AQLHPFAPREQAEGYRAMIDELEAWLCAITG----FDAICMQPNSGA-QGEYAGLLAIRRYHRSRGQSQRDICLIPSSAH 601 (954)
T ss_pred hcCCCCCchhhhcCHHHHHHHHHHHHHHHHC----CCeEeecCCchH-HHHHHHHHHHHHHHHhcCCCCCCEEEeccccc
Confidence 34567877 77888888888888888877 233344444443 4443343333 2222 5778888777
Q ss_pred cChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCc
Q 011570 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 154 ~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~ 233 (483)
+.....+... |.+++.++.++++ .+|+++|++++.+. +.++.+|++++|++-++. .+.+++|+++|+++|.
T Consensus 602 gtNpasa~~~-GieVv~Vp~D~~G--~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Ga 672 (954)
T PRK12566 602 GTNPASAQMA-GMRVVIVECDPDG--NVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGG 672 (954)
T ss_pred ccCHHHHHHC-CCEEEEeccCCCC--CcCHHHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCC
Confidence 5544555554 9999999997544 79999999998632 237788888888875433 3559999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHHHHhh--h-
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCARKMS--S- 306 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~~~~~--~- 306 (483)
++++|.+... .. ....... ..+..++++++.|+|+ ..|.-+|.+.+ .+.+...+..+. .
T Consensus 673 lv~vDgA~~~---a~-~~l~~Pg---------~~GADi~~~s~HKtf~~P~G~GGP~vG~iav-~~~L~pfLp~~P~~d~ 738 (954)
T PRK12566 673 QVYMDGANLN---AQ-VGLARPA---------DIGADVSHMNLHKTFCIPHGGGGPGMGPIGV-RAHLAPFVANHPVVPV 738 (954)
T ss_pred EEEEEeeChh---hc-cCCCChh---------hcCCCEEEecCCcccCcCccCCCCccchhhh-hhhhhhhccCCCCcCC
Confidence 9999999852 11 1112122 2355688899999885 22444565544 233333332211 0
Q ss_pred ------cCCCCh------HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEE--EeeecC
Q 011570 307 ------FGLVSS------QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLF--LWMDLH 371 (483)
Q Consensus 307 ------~~~~s~------~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f--~~~~l~ 371 (483)
.+.++. ....++..++...+. + +.+.......+.+++.+.|.+. ++.+.++.+-+| +.++++
T Consensus 739 ~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~--e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~ 815 (954)
T PRK12566 739 EGPDPNNGAVSAAPWGSASILPISWMYIAMMGP--Q-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLR 815 (954)
T ss_pred CCCCCCCCceeecccchHHHHHHHHHHHHHHCH--H-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcc
Confidence 011111 111122222332221 2 3444444455778888888763 444432222211 122333
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
...+... .+..+++++|+ ++||..-- ..|. ..+++|++... .+++++++++++|+.+.++.
T Consensus 816 ~l~~~~g-~~~~dvakRL~-d~Gihapt-~~fP--v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 816 PLKAQTG-ISEEDVAKRLM-DYGFHAPT-MSFP--VPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred ccccccC-CCHHHHHHHHH-HCCcEEeE-Eeec--cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 2111111 12347899998 67987433 2342 47789999966 59999999999999888774
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=118.88 Aligned_cols=294 Identities=11% Similarity=0.073 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCc---
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGV--- 166 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~--- 166 (483)
+....+|+.+.+..+ -..+.+++++++++++..++..... ++ .+|+....+|++....+....+.
T Consensus 83 ~~~~~lae~L~~~~p----~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~ 158 (422)
T PRK05630 83 EPAIKLTRKLLNLTD----NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGG 158 (422)
T ss_pred HHHHHHHHHHHhhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccc
Confidence 344555655554321 1246899999999999988865421 23 57899998887743322211121
Q ss_pred ----------EEEEeecCCCCCcccCH-------HHHHHHHHHHHhcCCceeEEEEeC-CCCCCcCC-CCHHHHHHHHHH
Q 011570 167 ----------QLVPVVCDSSNDFKVTM-------EALEAAYEKAQESNIRIKGVLITN-PSNPLGTF-LDRETLKDIVSF 227 (483)
Q Consensus 167 ----------~~~~v~~~~~~~~~~d~-------~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~~-~~~~~l~~i~~~ 227 (483)
.+..+|.... ...+. +.+++.+. .++.+|++.- +..-.|.+ .+.+.++++.++
T Consensus 159 ~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~------~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~l 230 (422)
T PRK05630 159 MHSLWKGTLPEQIFAPAPPV--RGSSPQEISEYLRSLELLID------ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTL 230 (422)
T ss_pred ccccccccCCCCeEcCCCcc--cCCChHHHHHHHHHHHHHHh------hceEEEEEechhcCcCCcccCCHHHHHHHHHH
Confidence 1122222210 01111 23333332 2676766664 25666774 467789999999
Q ss_pred HhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--
Q 011570 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-- 304 (483)
Q Consensus 228 a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-- 304 (483)
|++||+++|.||++.++...+ .+...... . . .+| |+ +++|.++ .| ..+|.+++ ++.+.+.+...
T Consensus 231 c~~~g~llI~DEv~tG~GrtG--~~~a~~~~-g-v---~PD--i~--t~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~ 297 (422)
T PRK05630 231 CDKHDILLIADEIATGFGRTG--ELFATLAA-G-V---TPD--IM--CVGKALT-GGFMSFAATLC-TDKVAQLISTPNG 297 (422)
T ss_pred HHHcCCEEEEecceeCCCcCc--hhhHHHhc-C-C---CCC--ee--eeechhh-cCccccceeec-cHHHHHHHhccCC
Confidence 999999999999997642222 22221111 1 0 222 33 7899986 67 58999998 56666655321
Q ss_pred ------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchh
Q 011570 305 ------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLL 374 (483)
Q Consensus 305 ------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~ 374 (483)
...+..++.+.+++.+.|+-- ++ ....+++.+.-+++.+.|+++ .+.-.. .-|+++-+++....
T Consensus 298 ~~~~~h~~T~~g~Pla~aaa~aaL~~l---~~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vR-g~Gl~~~ie~~~~~ 371 (422)
T PRK05630 298 GGALMHGPTFMANPLACAVAHASLEII---ET--GMWRKQVKRIEAELIAGLSPLAHLPGVADVR-VLGAIGVVEMEQPV 371 (422)
T ss_pred CCccccCCCCcCCHHHHHHHHHHHHHH---Hh--CcHHHHHHHHHHHHHHHHHHhhcCCCeeeee-ccccEEEEEECCcc
Confidence 111224555555555444321 10 011222333333444434322 122122 23567778775321
Q ss_pred hccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 375 ~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
. ...+...++ ++||.+.+. + +.+||.... ++++++++++++|.++++.
T Consensus 372 ~------~~~~~~~~~-~~Gl~~~~~------g-~~l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 372 D------MEEATQAAV-DHGVWLRPF------G-RLVYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred c------HHHHHHHHH-HCCeEEEec------C-CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 1 125556666 569998753 1 479999976 5999999999999999865
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-10 Score=118.94 Aligned_cols=293 Identities=14% Similarity=0.059 Sum_probs=163.2
Q ss_pred cEEEe-CChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCCC--CCcc---
Q 011570 121 RIVMS-GGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDSS--NDFK--- 180 (483)
Q Consensus 121 ~i~it-~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~~--~~~~--- 180 (483)
.++++ +++++++..++.... ....+|+...-+|.+.........|. .+..+|.+.. ..+.
T Consensus 128 ~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 207 (464)
T PRK06938 128 KIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGG 207 (464)
T ss_pred eEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCch
Confidence 56665 789999998887642 22367888888887754332221111 1222332211 0111
Q ss_pred -----cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 181 -----VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 181 -----~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
.+++.+++.+.+......++.+|++.....-.|.+ .+.+.++++.++|++||+++|.||+..++...+ .+..
T Consensus 208 ~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG--~~~a 285 (464)
T PRK06938 208 EAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG--KMFA 285 (464)
T ss_pred hhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc--HHHH
Confidence 13566777775321111246665554334444665 468899999999999999999999998742222 2222
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHHHHHHHHhcCChhHHHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQTQHLIATMLSDDQFVEKFI 332 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (483)
...+.- .+| |+ +++|.+| .|+.+|.+++. +++ +.+.. ....+..++++.+++.+.|+--. +
T Consensus 286 ~e~~gv-----~PD--iv--~~gKglg-gG~PlsAv~~~-~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~--~--- 348 (464)
T PRK06938 286 FEHAGI-----IPD--VV--VLSKAIG-GSLPLAVVVYR-EWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIK--E--- 348 (464)
T ss_pred HHhcCC-----CCC--EE--Eeecccc-CCCceEEEeeh-hHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHH--H---
Confidence 221211 222 22 6699998 89999999985 434 33221 11112356676666655553211 1
Q ss_pred HHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhcc--------ChHHHHHHHHHHHHhcCeEeeCC
Q 011570 333 AESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQ--------TYEAEMALWRVIINEVKLNVSPG 400 (483)
Q Consensus 333 ~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~--------~~~~~~~~~~~Ll~~~gV~v~pg 400 (483)
+...++.++.-+++.+.|++ +++......-|+++.+++....... .......+...++ ++||++.++
T Consensus 349 ~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~ 427 (464)
T PRK06938 349 HRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECL-RRGLILELG 427 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHH-HCCeEEeec
Confidence 01112222222333333332 3433333444677778774311100 0011234566666 469999875
Q ss_pred CCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 401 SSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+ .+.+|+.... +++++++++++++.+++.+.
T Consensus 428 g~~----~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~ 461 (464)
T PRK06938 428 GRH----GSVVRFLPPLIITAEQIDEVAEIFAEAVAAA 461 (464)
T ss_pred CCC----CCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 322 3579998765 59999999999999998763
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.45 E-value=8e-11 Score=127.75 Aligned_cols=308 Identities=15% Similarity=0.153 Sum_probs=185.4
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--------CCCCeEEEeCCCCcChHHHHhhhcC
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--------DPGDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
+|..++...+..|+.+..| .+...+.. +|+.++-...+.++. ...++|+++.-.|+.....+... |
T Consensus 526 qG~lq~i~elq~~l~eltG----md~~Sl~p-~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~-G 599 (939)
T TIGR00461 526 EGYQELIAQLEKWLCSITG----FDAISLQP-NSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMA-G 599 (939)
T ss_pred HHHHHHHHHHHHHHHHHHC----CCCcccCC-chHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC-C
Confidence 4677888888888888877 34333333 444444443332221 12357999999887766667765 9
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
.+++.++.++ +..+|+++|++++.+ ++.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|.++..-.
T Consensus 600 ~~Vv~V~~d~--~G~iDle~L~~~i~~---~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 600 MQVVPVNCDQ--DGNIDLVDLKNKAEQ---HGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred CEEEEeccCC--CCCcCHHHHHHHHhh---cCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEecChhhC
Confidence 9999999875 347999999999974 234789999999999 788754 38888999999999999999985311
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHHHH--h----------hhcCC
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCARK--M----------SSFGL 309 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~~~--~----------~~~~~ 309 (483)
..- .+.. ..+-.+++.|.+|+|+ ..|--+|++.+. +.+...+.. . ...+.
T Consensus 672 ~~l----~~Pg---------~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr-~~L~~~lPg~~v~~t~d~~greq~Iga 737 (939)
T TIGR00461 672 VGL----TSPG---------DLGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-SHLIPFLPKHDVVSMITGIGGSKSIGS 737 (939)
T ss_pred CCC----CCcc---------ccCCCEEEecCCccCCCCCCCCCCCeEEEEEh-hhchhhcCCCcccccccCCCCcccccc
Confidence 111 1111 2355677889999764 345558999884 323322110 0 00011
Q ss_pred CCh---------HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC-ceE-E--EeeecCchhhc
Q 011570 310 VSS---------QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN-AGL-F--LWMDLHHLLKE 376 (483)
Q Consensus 310 ~s~---------~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~-~g~-f--~~~~l~~~~~~ 376 (483)
+++ +...+-..++...+ +++..+.--.+.+++.+.|.+ ++++..+. .+. | +.++++.....
T Consensus 738 ~s~~~~g~a~~~l~a~~yi~~lG~~G-----L~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~ 811 (939)
T TIGR00461 738 VSAAPYGSASILPISWMYIKMMGNEG-----LPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAK 811 (939)
T ss_pred ccccccCcHHHHHHHHHHHHHHCHHH-----HHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhh
Confidence 111 11111112223222 344445555677888888876 55544332 222 1 23455532111
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.. ....+++++|++ +|+.--. ..|...+.=.++.+-. .+.++||+++++|.++-++..+
T Consensus 812 ~g-~~~~dIakrL~d-~G~hapt-~~~pv~g~lmiepTE~-eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 812 TG-IEAIDVAKRLQD-YGFHAPT-LSFPVPGTLMVEPTES-ESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred cC-CCHHHHHHHHHh-CCeeccc-cCCccCCeEEEEeecc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 11 124588999986 5986322 2243323224666654 5899999999999887766554
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-11 Score=124.49 Aligned_cols=251 Identities=14% Similarity=0.149 Sum_probs=175.4
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC--------C------CeEEEeCCCCcChHHHH
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP--------G------DAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~--------g------d~Vlv~~P~y~~~~~~~ 160 (483)
+..++.+.+..++.+.++. + ....-.+|.|+|+++.+.+.+..+. + -.|+++.-.|.++..++
T Consensus 98 ~a~~~E~~~v~~l~~l~~~--~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa 174 (460)
T COG0076 98 AAAELEERVVNMLSDLLGA--P-EEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174 (460)
T ss_pred hHHHHHHHHHHHHHHHhCC--C-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHH
Confidence 6789999999999998772 1 3446789999999998777664211 1 16999999999999999
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
..+ |+++..++++.. ++.+|+++++++|.+....+ +|+.+-++.+||.+=+ +++|.++|+++++++++|.|
T Consensus 175 ~~l-G~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g----~vV~~aGtT~~G~iDd---i~~ia~ia~~~~i~lHVDAA 245 (460)
T COG0076 175 RYL-GLGLRRVPTVPT-DYRIDVDALEEAIDENTIGG----VVVGTAGTTDTGSIDD---IEELADIAEEYGIWLHVDAA 245 (460)
T ss_pred HHh-CCCceeEEeccC-ccccCHHHHHHHHHhhccCc----eEEEEecCCCCCccCC---HHHHHHHHHHcCCcEEEEcc
Confidence 887 999999998765 78999999999998742211 3777778999999877 88889999999999999999
Q ss_pred cccCcc--CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh-HHHHHHHHhhhcCC--------
Q 011570 241 YAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND-QVVSCARKMSSFGL-------- 309 (483)
Q Consensus 241 y~~~~~--~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~-~l~~~~~~~~~~~~-------- 309 (483)
|+++.. .. ....-...+ ....-+.-+++|.. +.-..+||++..++ .+.+.......++.
T Consensus 246 ~GG~~~pf~~-~~~~~~f~l--------~~vdSIt~d~HK~g-~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~t 315 (460)
T COG0076 246 FGGFLLPFLE-PDGRWDFGL--------EGVDSITVDGHKYG-LAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFT 315 (460)
T ss_pred ccceeecccC-ccchhhcCC--------CCceEEEECccccc-CCCCCceEEEEECHHHhhhhhhcccccCCCCCcCcee
Confidence 998753 22 221101111 12223356999965 68888999999776 45554432222211
Q ss_pred --CCh-----HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCc
Q 011570 310 --VSS-----QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHH 372 (483)
Q Consensus 310 --~s~-----~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~ 372 (483)
.+. +.+.+....+..++ +++..++..+..+++.+.|++.| +++..+.....+.+++++
T Consensus 316 i~~sr~~~~~~~~~~~l~~lG~eG-----y~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~ 381 (460)
T COG0076 316 ILGSRPGRQALALYANLRRLGREG-----YRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKD 381 (460)
T ss_pred EeeccchHHHHHHHHHHHHhCHhH-----HHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCC
Confidence 111 22233333333333 35666667788899999999986 887764455677788854
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=120.05 Aligned_cols=311 Identities=11% Similarity=0.055 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.+.+..+|+.+.+..+ -..+.+++++++++++..++..... +| .+|+...-+|.+.........|..
T Consensus 93 ~~~~~~lae~L~~~~p----~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~ 168 (456)
T PRK07480 93 HPPAIELAAKLAEVAP----PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKY 168 (456)
T ss_pred CHHHHHHHHHHHHhCC----CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChh
Confidence 4555666666654422 2346899999999999998865421 33 468888888876432211111111
Q ss_pred -----------EEEeecCC--CCCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHH
Q 011570 168 -----------LVPVVCDS--SNDFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIV 225 (483)
Q Consensus 168 -----------~~~v~~~~--~~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~ 225 (483)
+..++.+. ...+..+ ++.+++.+.+. ...++.+|++.....-.|.+ .+.+.+++|.
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr 246 (456)
T PRK07480 169 MHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNVAAFIGEPIQGAGGVIIPPATYWPEIQ 246 (456)
T ss_pred hhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 11111110 0000011 24454444321 12356666666445556774 5677899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHH-
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARK- 303 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~- 303 (483)
++|++||+++|.||++.++.-.+ .+.....+.- .+| + -+|+|.+| .|+ .+|.+++ .+++.+.+..
T Consensus 247 ~lc~~~g~llI~DEV~tGfGRtG--~~~a~~~~gv-----~PD--i--v~~gK~l~-gG~~Pi~av~~-~~~i~~~~~~~ 313 (456)
T PRK07480 247 RICRKYDILLVADEVICGFGRTG--EWFGSQHFGI-----KPD--L--MTIAKGLT-SGYIPMGAVGV-GDRVAEVLIEE 313 (456)
T ss_pred HHHHHcCCEEEEechhhCCCcCc--chhhhhhcCC-----CCC--e--eeeehhhc-cCCccceEEEE-cHHHHHHHhcC
Confidence 99999999999999997742222 2222222211 223 2 27799998 784 8999999 4566665521
Q ss_pred ---h--hhcCCCChHHHHHHHHhcCC---hhHHHHHH-HHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh
Q 011570 304 ---M--SSFGLVSSQTQHLIATMLSD---DQFVEKFI-AESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374 (483)
Q Consensus 304 ---~--~~~~~~s~~~q~~~~~~l~~---~~~~~~~~-~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~ 374 (483)
. ...+..++++.+++.+.|+- ++. .+.. ++.-+.+.+ .+.+ +.++++......-|+++-+++....
T Consensus 314 ~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l-~~~~~~~~g~~l~~---~l~~-l~~~~~i~~vrG~Glm~gie~~~~~ 388 (456)
T PRK07480 314 GGEFNHGFTYSGHPVAAAVALANLRILRDEGI-VERVRDDTGPYLQK---RLRE-LADHPLVGEVRGVGLVGAIELVKDK 388 (456)
T ss_pred CCCcccCCCCCcCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH---HHHH-hhcCCCeeeEEeecceEEEEEeccc
Confidence 1 11133566776666655532 221 1112 122222222 2222 3334432222334567777773211
Q ss_pred hc-cCh----HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 375 KE-QTY----EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 375 ~~-~~~----~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.. ..+ .....+...++ ++||.+.+. .+.+||+... ++++++++++++|.+++.+..+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~-------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 451 (456)
T PRK07480 389 ATRERFEAGGGVGTICRDHCF-ANGLIMRAV-------GDRMIISPPLVITHAEIDELVEKARKALDATAA 451 (456)
T ss_pred cccccCcchhhHHHHHHHHHH-HCCcEEeec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10 000 01124455555 569998652 1469999976 4999999999999999987644
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=117.72 Aligned_cols=291 Identities=14% Similarity=0.173 Sum_probs=166.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC------hHHHHhhhcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG------FDRDLRWRTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~------~~~~~~~~~G~~~~ 169 (483)
+..+++.+|++.+ .+..+++++++.++..++.+ +.+||+|++....|.. +...++.. |++++
T Consensus 124 ~~~le~~lA~l~g----------ae~alvv~sg~aAi~l~l~~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~-G~~~~ 191 (454)
T TIGR00474 124 YSHVEGLLCELTG----------AEDALVVNNNAAAVLLALNT-LAKGKEVIVSRGELVEIGGSFRIPDVMEQS-GAKLV 191 (454)
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHH-hCCcCEEEECCChhhhhcchhhHHHHHHHc-CCEEE
Confidence 4678888888875 23355677777888888855 6899999999866422 22334554 99999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC--c--CCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL--G--TFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt--G--~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
.++.+. ..+++++++++.+ ++++|++.+++|++ | .+.+ +++|+++|+++|+++|+|...+.+.
T Consensus 192 ~v~~~~----~~~l~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~~sG~l~ 258 (454)
T TIGR00474 192 EVGTTN----RTHLKDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDLGSGSLV 258 (454)
T ss_pred EeCCCC----CCCHHHHHHhcCc------CCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEECCCcccc
Confidence 887642 2478999998864 79999999999995 6 4667 8889999999999999998643210
Q ss_pred ----cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHH----
Q 011570 246 ----FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQ---- 315 (483)
Q Consensus 246 ----~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q---- 315 (483)
|+- ...+.+.... ..+..+++.|.+|.+|-| ..|++++. +.+.+.++..... ..+.-...
T Consensus 259 ~~~~~gl-~~~p~~~~~~------~~GaDiv~fSg~K~LgGp--~~G~i~g~-~~~i~~l~~~~l~r~lr~~k~~la~l~ 328 (454)
T TIGR00474 259 DLSRYGL-PDEPTVQEVI------AAGVDLVTFSGDKLLGGP--QAGIIVGK-KELIERLKKNPLTRALRVDKLTLAALE 328 (454)
T ss_pred cchhccC-CCCcccccHh------HcCCCEEEecCccccCCC--eEEEEEEC-HHHHHhhhhchhHHHHhhChHHHHHHH
Confidence 100 0001111111 124458888999998534 48999985 4444433221100 11222221
Q ss_pred HHHHHhcCChh-HHH----HHHHHHHHHHHHHHHHHHHhhhcC---Cc--eeecCC----ceEEEeeecCch---hhccC
Q 011570 316 HLIATMLSDDQ-FVE----KFIAESAKRIAERHKAFTWGLSQV---GI--GCLKSN----AGLFLWMDLHHL---LKEQT 378 (483)
Q Consensus 316 ~~~~~~l~~~~-~~~----~~~~~~~~~l~~~~~~l~~~L~~~---gi--~~~~~~----~g~f~~~~l~~~---~~~~~ 378 (483)
..+..++...+ +.. +.+....+.+.++...+.+.|+.. ++ ++.+.. ||-+--..+|.. +....
T Consensus 329 ~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~ 408 (454)
T TIGR00474 329 ATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDG 408 (454)
T ss_pred HHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCC
Confidence 22223333221 111 223334456666777777878653 22 333322 221111112211 00000
Q ss_pred hHHHHHHHHHHHHhcC--eEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVK--LNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~g--V~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
. ...++.++ |++.. |..+ -.++.+.+-+....+++++.++++|
T Consensus 409 ~-~~~~l~~~-lr~~~~~ii~r-------~~~~~~~ld~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 409 L-SAEKLEAR-LRELPPPIIGR-------IEDDRFLLDLRTLLEDEEELLIEAL 453 (454)
T ss_pred C-CHHHHHHH-HhcCCCCEEEE-------EECCEEEEEeCcCCHHHHHHHHHHh
Confidence 0 12244444 34444 4433 2356788888767888888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=119.39 Aligned_cols=282 Identities=13% Similarity=0.096 Sum_probs=163.3
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCcE-------------EEEeecCCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGVQ-------------LVPVVCDSSN 177 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~~-------------~~~v~~~~~~ 177 (483)
-+.+++++++++++..++..... +| .+|+...-+|.+....+....|.. +..++... .
T Consensus 105 ~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 183 (427)
T TIGR00508 105 LDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQ-N 183 (427)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCC-c
Confidence 36899999999999988865431 23 578999988877543322211211 01111110 0
Q ss_pred Ccc-----cCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 178 DFK-----VTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 178 ~~~-----~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
.+. -|++++++.+... +.++.+|++... ++-.|. +.+.+.+++|.++|++||+++|+||++.++...+ .
T Consensus 184 ~~~~~~~~~~~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G-~ 259 (427)
T TIGR00508 184 RFDEEWNEEAITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG-K 259 (427)
T ss_pred cccchhHHHHHHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC-c
Confidence 111 1456666666532 235655555532 555565 4578999999999999999999999997643332 2
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCc-eEEEEEecChHHHHHHHHh-------hhcCCCChHHHHHHHHhc
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF-RVGIIYSYNDQVVSCARKM-------SSFGLVSSQTQHLIATML 322 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~li~~~~~l~~~~~~~-------~~~~~~s~~~q~~~~~~l 322 (483)
. .....+.- .++ |+ ++||.++ .|+ .++.++. ++.+.+.+... ...+..++++.+++.+.|
T Consensus 260 ~-~~~~~~~v-----~pD--i~--~~gK~l~-gG~~p~~a~~~-~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l 327 (427)
T TIGR00508 260 L-FACEHAGV-----VPD--IL--CVGKALT-GGYMTLSATVT-TDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASL 327 (427)
T ss_pred c-chhhhcCC-----CCC--EE--Eechhhh-cCcccceEEEE-cHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHH
Confidence 2 12211110 223 33 4799997 885 6787787 56666665431 111224666666655555
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-eee--cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC
Q 011570 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI-GCL--KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi-~~~--~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
+- +++ ....++++++-+++.+.|++++. ... ...-|.++.+.+.... ....+...+++ +||.+.+
T Consensus 328 ~~---l~~--~~~~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~------~~~~~~~~l~~-~Gv~~~~ 395 (427)
T TIGR00508 328 AI---LLE--GEWQKQVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPV------NVEELQKKFVE-QGVWIRP 395 (427)
T ss_pred HH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCcc------CHHHHHHHHHH-CCeEEEe
Confidence 42 111 11233444555556666655421 111 1112456666664311 12356777765 5999875
Q ss_pred CCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 400 GSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.. ..+|++... ++++++++++++|.+++.+
T Consensus 396 ~~-------~~l~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 396 FG-------KLIYVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred cC-------CEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 31 369998875 5999999999999998854
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-10 Score=114.98 Aligned_cols=317 Identities=14% Similarity=0.078 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCC--CcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC-------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDP--DRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG------- 165 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~--~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G------- 165 (483)
.+.+..+|+.+.+..+ . ... ..+++++++++++..++.... .....|+...-+|.+.........|
T Consensus 100 ~~~~~~lAe~L~~~~p--~-~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~ 176 (459)
T PRK06931 100 TPLKDAFSEYLLSLLP--G-QGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNA 176 (459)
T ss_pred CHHHHHHHHHHHHhCC--C-ccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccC
Confidence 4566667777654421 0 011 134556899999998886542 2346788888888776544332111
Q ss_pred -----cEEEEeecCCCC--Ccc----cCHHHHHHHHHHHHh----cCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHh
Q 011570 166 -----VQLVPVVCDSSN--DFK----VTMEALEAAYEKAQE----SNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFIN 229 (483)
Q Consensus 166 -----~~~~~v~~~~~~--~~~----~d~~~l~~~i~~~~~----~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~ 229 (483)
..+..+|.+... .|. -+.+.++..+.+... ...++.+|++.....-.|.+ .+.+.++++.++|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~ 256 (459)
T PRK06931 177 VNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ 256 (459)
T ss_pred CCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH
Confidence 012223322110 011 123344333332221 12346666554334444654 57888999999999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--hhc
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--SSF 307 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~~~ 307 (483)
+||+++|.||+..++...+ .+.....+.- .+| |+ +++|.+| .|+.+|.+++. +.+ +.+... ...
T Consensus 257 ~~g~LlI~DEV~tGfGRtG--~~~a~~~~gv-----~PD--iv--t~gK~l~-gG~Pi~av~~~-~~~-~~~~~~~~~~T 322 (459)
T PRK06931 257 KHGILLIVDEVQAGFARTG--KMFAFEHAGI-----EPD--II--VMSKAVG-GGLPLAVLGIK-KEF-DAWQPGGHTGT 322 (459)
T ss_pred HcCCEEEEecchhcCCcCc--hHHHhhhcCC-----CCC--EE--Eeccccc-CCcceeeeeeH-HHH-hhccCCCCCCC
Confidence 9999999999998743222 2222222211 223 22 6799998 89999988874 443 333211 111
Q ss_pred CCCChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhc-------c
Q 011570 308 GLVSSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE-------Q 377 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~-------~ 377 (483)
+..++++.+++.+.|+ +.+. .++.++.-+++.+. |.+...++++......-|+++.+++...... .
T Consensus 323 ~~gnpla~aaala~L~~l~~~~l-~~~~~~~G~~l~~~---L~~l~~~~~~i~~vrG~Glm~giel~~~~~~~~~~~~~~ 398 (459)
T PRK06931 323 FRGNQLAMATGLTTLKILKEENL-AQNAAERGEWLKAQ---LAELQKRYPCIGNVRGRGLMIGIEIVDERQPADAMGSYP 398 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHH---HHHHHHhCCCeEeEecCceEEEEEEccCcccccccccCC
Confidence 2356777666555553 2221 22233333333222 2222223344333344467777777431100 0
Q ss_pred -ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 378 -TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 378 -~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.......+...++ ++||++.++.. ..+.+|+..+. ++++++++++++|.+++.+..+
T Consensus 399 ~~~~~~~~~~~~~~-~~Gvl~~~~~~----~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 399 ADGELAAAIQKACF-ENGLLLERGGR----NGNVVRLLPPLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred ccHHHHHHHHHHHH-HCCcEEeecCC----CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 0111234556666 46999976432 23579998876 5999999999999999987543
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-09 Score=111.39 Aligned_cols=280 Identities=14% Similarity=0.092 Sum_probs=153.4
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--------CC------CCeEEEeCCCCcChHHHHhhhcCcEEE-----------Eeec
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--------DP------GDAFLVPTPYYPGFDRDLRWRTGVQLV-----------PVVC 173 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--------~~------gd~Vlv~~P~y~~~~~~~~~~~G~~~~-----------~v~~ 173 (483)
.+.|++++++++++..++.... .. ..+|+...-+|.+....+....|.... .++.
T Consensus 110 ~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 189 (443)
T PRK08297 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 189 (443)
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCC
Confidence 4689999999999999987652 11 257999999987765433322221100 0110
Q ss_pred CCCCCcc--------------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 174 DSSNDFK--------------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 174 ~~~~~~~--------------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
.. ..+. -+++.+++.+.+ ...++.+|++.....-.|. +.+.+.+++|.++|++||+++|.|
T Consensus 190 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~D 265 (443)
T PRK08297 190 PK-LRFPLPGEDLEEVEALEAEALAQARAAFER---HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFD 265 (443)
T ss_pred CC-CCCCCcccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 00 0000 023444555543 2345666665533444465 468889999999999999999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH-Hh------hhcCCCC
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-KM------SSFGLVS 311 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~-~~------~~~~~~s 311 (483)
|++.++...+ .+.....+.- .+| ++ +|+|.+++ | |.+.. ++ +.+... .. ...+..+
T Consensus 266 EV~tGfGRtG--~~~a~~~~gv-----~PD--iv--~~gK~l~~-~---a~l~~-~~-i~~~~~~~~~~~~~~~~T~~gn 328 (443)
T PRK08297 266 EVQTGVGLTG--TAWAYQQLGV-----RPD--IV--AFGKKTQV-C---GIMAG-RR-VDEVEDNVFAVSSRINSTWGGN 328 (443)
T ss_pred chhhccCccc--hHHHHHhcCC-----CCC--EE--Eecccccc-c---ceecc-hH-HHHhhhhhccCccccCCCCCcc
Confidence 9998743332 2222222211 223 22 57998742 1 34433 32 222211 11 1112256
Q ss_pred hHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ce-eecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 312 SQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IG-CLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 312 ~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~-~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
+++..++.+.|+ +++. .+...+.-+.+++. +.+...+.+ +. ..... |+++.++++.. .....++
T Consensus 329 pl~~aaa~a~L~~l~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~~~~~vrg~-G~~~~i~~~~~------~~~~~~~ 397 (443)
T PRK08297 329 LVDMVRARRILEVIEEDGL-VENAARQGEYLLAR---LEELAAEFPAVVSNVRGR-GLMCAFDLPTT------ADRDEVI 397 (443)
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH---HHHHHHHCCCcceeeecc-ceEEEEEecCH------HHHHHHH
Confidence 666666555554 2221 12222222222222 222222222 21 22333 56778888531 1123677
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++ ++||++.|+. ...+|++.+. ++++++++++++|.+++++.
T Consensus 398 ~~l~-~~Gvl~~~~~------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 398 RRLW-EEGVLVLPCG------ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred HHHH-HCCEEEecCC------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 7777 5699998742 2468997655 59999999999999998753
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.5e-10 Score=111.52 Aligned_cols=264 Identities=16% Similarity=0.167 Sum_probs=162.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCc---CCCcEEEeCChhHHHHHHHHHhcC--------CC-----C-eEEEeCCC
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITF---DPDRIVMSGGATGAHETVAFCLAD--------PG-----D-AFLVPTPY 152 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~---~~~~i~it~G~~~al~~~~~~l~~--------~g-----d-~Vlv~~P~ 152 (483)
|...+...++...+.+|+.+.+|..-.. ....=++|+|+++++...+.+..+ .| . .|++.+-+
T Consensus 71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a 150 (373)
T PF00282_consen 71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA 150 (373)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS
T ss_pred cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 3333457899999999999998832110 124678999999999877755421 12 2 56677778
Q ss_pred CcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 153 y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
|..+..++..+ |..++.||+++ ++.+|+++|+++|.+..++|..+-+|+.+-.+..||.+=+ +.+|+++|++++
T Consensus 151 H~S~~Kaa~~l-Glg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~---l~~i~~i~~~~~ 224 (373)
T PF00282_consen 151 HYSIEKAARIL-GLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP---LEEIADICEKYN 224 (373)
T ss_dssp -THHHHHHHHT-TSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S---HHHHHHHHHHCT
T ss_pred ccHHHHhccee-eeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCcccccccC---HHHHhhhccccc
Confidence 88888888886 99999999986 5689999999999887776654546667777889999855 888899999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH-HHHHHHhhhc----
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-VSCARKMSSF---- 307 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l-~~~~~~~~~~---- 307 (483)
+|+.+|.+|++..+-. +.+.....-.+ .-+ -+..+++|.++ ....+|+++..++.. .........+
T Consensus 225 ~wlHVDaA~gg~~~~~-~~~~~~~~gi~-----~ad--Sit~d~HK~l~-~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~ 295 (373)
T PF00282_consen 225 IWLHVDAAYGGSALLS-PEYRHLLFGIE-----RAD--SITIDPHKWLG-VPYGCGVLLVRDKSDLRDAFSINADYLGND 295 (373)
T ss_dssp -EEEEEETTGGGGGGH-CTTGGGGTTGG-----GES--EEEEETTTTTS--SSS-EEEEESSGGGHHGGGEEEETCTT-S
T ss_pred eeeeeccccccccccc-ccccccccccc-----ccc--ccccchhhhhc-CCccceeEEeecccchHHHhccChhhhccc
Confidence 9999999998843322 22222111111 112 23458999987 667899999866543 3222100011
Q ss_pred --------------CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeee
Q 011570 308 --------------GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMD 369 (483)
Q Consensus 308 --------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~ 369 (483)
...+. ...++..++.-..+-.+-+++..++..+..+++.+.|++. ++++..+..-..+.++
T Consensus 296 ~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr 371 (373)
T PF00282_consen 296 DRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFR 371 (373)
T ss_dssp -SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEE
T ss_pred ccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEE
Confidence 11222 2222222221111112334555666677788899999887 5777643333344444
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.7e-10 Score=114.24 Aligned_cols=169 Identities=20% Similarity=0.243 Sum_probs=127.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+..+..|+.++ .....+++||++.++..++++++.+||.||++.+||-+....+-.. |+..+.+....
T Consensus 72 i~eAqe~aA~~fg---------Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glila-Ga~Pvyl~p~~ 141 (557)
T COG1982 72 IKEAQELAARVFG---------ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILA-GATPVYLEPSR 141 (557)
T ss_pred HHHHHHHHHHHhC---------CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHc-CCceEEecCCC
Confidence 5677777777765 3447899999999999999999999999999999999888887665 99888776543
Q ss_pred CCC----cccCHHHHHHHHHHHHhcCCce-eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 176 SND----FKVTMEALEAAYEKAQESNIRI-KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 176 ~~~----~~~d~~~l~~~i~~~~~~~~~~-~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+.. ..++.+.+++++.++ +.. |+++++||.. -|.++. +++|++.+...++|+.+||++... ++. .
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~----~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~~-~~~-~ 211 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAH----PDAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPAH-FDF-S 211 (557)
T ss_pred CccccccCCCCHHHHHHHHHhC----hhhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCccc-ccc-c
Confidence 221 257899999988764 344 8899998877 699999 778888888999999999999653 333 2
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEec
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYSY 293 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~~ 293 (483)
+..+.... +...++++.|.+|.+ +++..+ ++...
T Consensus 212 ~~l~~~~~-------~~~~~~~tqS~HK~l--~alSQaS~iHv~ 246 (557)
T COG1982 212 PMLPESAL-------NGGADFVTQSTHKLL--AALSQASMIHVK 246 (557)
T ss_pred ccCcchhh-------hcCceEEEechhhhh--hhhhhhHHHhhC
Confidence 21121111 347788999999987 455555 55553
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-09 Score=112.67 Aligned_cols=274 Identities=12% Similarity=0.132 Sum_probs=143.7
Q ss_pred CCcEEEeCChhHHHHHHHHHhc-CCC-CeEEEe-CCCCcChHHHHh----hhcCcE--EE--EeecCCCCCcccCHHHHH
Q 011570 119 PDRIVMSGGATGAHETVAFCLA-DPG-DAFLVP-TPYYPGFDRDLR----WRTGVQ--LV--PVVCDSSNDFKVTMEALE 187 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~-~~g-d~Vlv~-~P~y~~~~~~~~----~~~G~~--~~--~v~~~~~~~~~~d~~~l~ 187 (483)
.+.+++++++++++..++.... -.| ..|+.. ..+|..+..... ...|.. .. .+... + -|++.++
T Consensus 104 ~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~-~d~~~l~ 178 (431)
T PRK06209 104 ADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----Y-NDIASLE 178 (431)
T ss_pred cceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----C-CCHHHHH
Confidence 3689999999999999887532 123 345544 333332111100 000110 00 01111 1 2788999
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCC
Q 011570 188 AAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNR 267 (483)
Q Consensus 188 ~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~ 267 (483)
+.+++. ..++.+|+ ..|- .|...+.+.+++|.++|++||+++|+||++.++.+.. ........ . .+
T Consensus 179 ~~l~~~---~~~~aavi-~Epv--~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~----~g~~~~~g-v---~P 244 (431)
T PRK06209 179 ALFEDH---PGRIACVI-LEPA--TADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHM----RGAQKLYG-I---VP 244 (431)
T ss_pred HHHHhC---CCCEEEEE-Eccc--cCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc----chhhHHhC-C---Cc
Confidence 888642 22455544 4553 2447788899999999999999999999987642211 11221111 0 12
Q ss_pred CeEEEEecCccccCCCCceEEEEEecChHHHHH--HHH---hhh-----cCCCChHHHHHHHHhc---CChhHHHHHHHH
Q 011570 268 NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC--ARK---MSS-----FGLVSSQTQHLIATML---SDDQFVEKFIAE 334 (483)
Q Consensus 268 ~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~--~~~---~~~-----~~~~s~~~q~~~~~~l---~~~~~~~~~~~~ 334 (483)
+ +.+++|.+| .|+.+|.+++ ++.+.+. +.. ... ....++++.+++.+.| .+.+.
T Consensus 245 D----i~t~gK~lg-gG~p~~av~~-~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~------- 311 (431)
T PRK06209 245 D----LSCFGKALG-NGFAVSALAG-KREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDV------- 311 (431)
T ss_pred c----eeeehhhhc-CCcccEEEEE-HHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCH-------
Confidence 2 357899998 7899999999 4556554 210 111 1223344444433333 22221
Q ss_pred HHHHHHHHHHHHHHhh----hcCCceeec-CCceEEEeeecCchhh-ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 335 SAKRIAERHKAFTWGL----SQVGIGCLK-SNAGLFLWMDLHHLLK-EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 335 ~~~~l~~~~~~l~~~L----~~~gi~~~~-~~~g~f~~~~l~~~~~-~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
.+.+.++-+++.+.| .++++.... ..|.++...-+..... .....-...+...+++ .||.+.|
T Consensus 312 -~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~~p~--------- 380 (431)
T PRK06209 312 -IERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQETIR-RGVLMPS--------- 380 (431)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHHHHH-CCccccc---------
Confidence 222233333333333 334544322 1232222211111000 0111111255666665 5987521
Q ss_pred CEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 409 GWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 409 ~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++|+.. .+++++++++++|.++++...
T Consensus 381 --l~is~~-ht~~dId~~l~~l~~~l~~~~ 407 (431)
T PRK06209 381 --LVVSYA-HGDADIERTIDAVHGALGVYR 407 (431)
T ss_pred --cccccc-CCHHHHHHHHHHHHHHHHHHH
Confidence 566643 699999999999999998863
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-09 Score=101.52 Aligned_cols=326 Identities=17% Similarity=0.225 Sum_probs=208.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCC-----CeEEEeCCCCcChHH-HHh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG-----DAFLVPTPYYPGFDR-DLR 161 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~g-----d~Vlv~~P~y~~~~~-~~~ 161 (483)
..|....++..|.+++-+.++ -+.++.|+-+..|-++++..++++| .+..+++..|....+ ..+
T Consensus 73 EAYagsrs~~~L~~avkdifG----------fq~~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~ 142 (471)
T COG3033 73 EAYAGSRSYYALADAVKDIFG----------FQYTIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQ 142 (471)
T ss_pred hhhcccccHHHHHHHHHHhcC----------ceeeeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHH
Confidence 358888888999999998876 2567778888888888887776654 444555565544333 344
Q ss_pred hhcCcEEEEeecCCCCC--------cccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 162 WRTGVQLVPVVCDSSND--------FKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 162 ~~~G~~~~~v~~~~~~~--------~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
. .|..++-++.++..+ ..+|++.|++.|.+...+ ++..|+++.- |.-.|+.+|.+.++++.++|++|+
T Consensus 143 ~-ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 143 I-NGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred h-cCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 4 488888887765433 347899999999876433 4566666654 457899999999999999999999
Q ss_pred cEEEEcccccc-Cc-cC--CC--CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH---HHHHHHH
Q 011570 233 IHLVCDEIYAA-TV-FT--KE--SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ---VVSCARK 303 (483)
Q Consensus 233 ~~iI~Deay~~-~~-~~--~~--~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~---l~~~~~~ 303 (483)
+.++.|.+-.. .. |- .+ -..+|+..+..++- .+..- ..-|.-|. |+.-+ -|++...++- +....+.
T Consensus 220 ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~--sYaD~-~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~ 294 (471)
T COG3033 220 IPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMY--SYADG-CTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRT 294 (471)
T ss_pred CcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHH--hhhhh-heeecccc-ceecc-ccEEEecCccHHHHHHHHHh
Confidence 99999987511 10 11 11 12256666655431 11111 12355565 23221 1577775542 3333332
Q ss_pred -------hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh--
Q 011570 304 -------MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL-- 374 (483)
Q Consensus 304 -------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~-- 374 (483)
+.++++.+.-...+++.-|.+.- -.+|++.+. +..++|.+.|.+.|+++..|.||--++++..+..
T Consensus 295 ~~V~~eG~~tYGgl~GrdmealAvGL~e~~-~~~yl~~Rv----~Qv~YL~~~l~~~GVpi~~paGGHavfvda~~~lph 369 (471)
T COG3033 295 LVVVQEGFPTYGGLAGRDMEALAVGLREGV-NFDYLAHRV----AQVQYLADGLEEAGVPIVQPAGGHAVFVDAGKFLPH 369 (471)
T ss_pred heEeeccccccCcccchhHHHHHHHHHHhc-CcHHHHHHH----HHHHHHHHHHHhcCCeeEecCCCceEEeehhhhcCC
Confidence 23345555555555555554321 133455443 3347899999999999999999888888765432
Q ss_pred -hccChHHHHHHHHHHHHhcCeEeeC-CCC-CCCCC---------CCEEEEEecc--CCHHHHHHHHHHHHHHHHHh
Q 011570 375 -KEQTYEAEMALWRVIINEVKLNVSP-GSS-FHCPN---------PGWFRVCFAN--MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 375 -~~~~~~~~~~~~~~Ll~~~gV~v~p-g~~-f~~~~---------~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~ 437 (483)
....+.. ..|+..|..+.||...- |+. ++.+. -.-+|+++.. .+.+.++..++.++++.++.
T Consensus 370 ip~eqFpa-qala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~ 445 (471)
T COG3033 370 IPAEQFPA-QALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENA 445 (471)
T ss_pred CChhhCcH-HHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhcc
Confidence 2223333 37888899999997543 432 11111 1359999954 38899999999998877665
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=109.10 Aligned_cols=297 Identities=12% Similarity=0.087 Sum_probs=177.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcCh-H-HHHhhhcCc-EEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGF-D-RDLRWRTGV-QLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~-~-~~~~~~~G~-~~~~v 171 (483)
..++-+.+.+.+.+.++ .+-+.+-++++.|++.++..++..++ ++||.|++.. .|+.- . +.++.. |. ++..+
T Consensus 37 F~~i~~e~~~~L~~l~~--~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~r~~~eia~~~-g~~~v~~l 112 (374)
T TIGR01365 37 GKEKLAEAIKKTREMLG--VPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGKGWVTDVTKQL-KLPDVRVL 112 (374)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHHHHHHHHHHhc-CCCCcEEE
Confidence 45555555556665555 11122236668999999999999998 5899998865 55543 3 555554 88 46666
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
..+. +-.+++++++. + +.|++++.-..||...+. .+++... ++.++|+|.+-+ +.. .+
T Consensus 113 ~~~~--g~~~~~~~ve~----------~-~~v~~vhnETSTGv~npv---~~i~~~~--~~~lliVDavSs---~g~-~~ 170 (374)
T TIGR01365 113 EAEY--GKLPDLKKVDF----------K-NDVVFTWNGTTSGVRVPN---GDFIPAD--REGLTICDATSA---AFA-QD 170 (374)
T ss_pred cCCC--CCCCCHHHcCC----------C-CCEEEecCCCchheeccc---ccccccc--CCCcEEEEccch---hcC-CC
Confidence 5443 33578888862 1 236778777899999994 4444322 478999999976 454 33
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH--------Hh-------------hhcCCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR--------KM-------------SSFGLV 310 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~--------~~-------------~~~~~~ 310 (483)
+ .+.. -.+++.|..|.+++|+ -+|+++.+++.+..... .+ ......
T Consensus 171 l-~~d~-----------iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~ 237 (374)
T TIGR01365 171 L-DYHK-----------LDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTI 237 (374)
T ss_pred C-ChhH-----------CcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCC
Confidence 2 2221 3366789999998654 25677775554433211 00 001112
Q ss_pred ChHHHHHHHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHhhhcCC-ceeecC----CceEEEeeecCch-hh----ccC
Q 011570 311 SSQTQHLIATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQVG-IGCLKS----NAGLFLWMDLHHL-LK----EQT 378 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~----~~g~f~~~~l~~~-~~----~~~ 378 (483)
+++...++.+++..-.++.+ -++.+.++.+++.+.+++.++++| +..... .+...+.+.++.. .+ ...
T Consensus 238 ~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~ 317 (374)
T TIGR01365 238 NTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQ 317 (374)
T ss_pred CChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchh
Confidence 23333333222221122222 256777788889999999999998 665542 2333344555432 11 000
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
..-..++...+. ++||.+.+|..- ..+..|||+... ++.++++.+++.|.=+.
T Consensus 318 ~~~~~~~~~~l~-~~gi~i~~G~~~--~~~~~fRIg~~G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 318 ADFAKELISTLE-KEGVAYDIGSYR--DAPSGLRIWCGATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred hHHHHHHHHHHH-HCCEEEeccccc--cCCCceEEecCCcCCHHHHHHHHHHHHHHH
Confidence 000124555554 569999988643 234679999854 79999999999986443
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-09 Score=110.86 Aligned_cols=280 Identities=13% Similarity=0.123 Sum_probs=152.6
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC--------------------------CC---CeEEEeCCCCcChHHHHhhhcCcE--
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD--------------------------PG---DAFLVPTPYYPGFDRDLRWRTGVQ-- 167 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~--------------------------~g---d~Vlv~~P~y~~~~~~~~~~~G~~-- 167 (483)
-+.+++++++++|+..++..... +| ..|+....+|.+.........|..
T Consensus 122 ~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~ 201 (464)
T TIGR00699 122 QDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPI 201 (464)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccc
Confidence 36899999999999999876520 11 269999999876544332221211
Q ss_pred ---------EEEeecCCC-CCc-----------ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHH
Q 011570 168 ---------LVPVVCDSS-NDF-----------KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIV 225 (483)
Q Consensus 168 ---------~~~v~~~~~-~~~-----------~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~ 225 (483)
+..+|.+.. ..+ .-+++.+++.+.+ .+.++.+|++.......|.+. +.+.++++.
T Consensus 202 ~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr 278 (464)
T TIGR00699 202 HKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK---WHKPVAAIIVEPIQSEGGDNHASPDFFRKLR 278 (464)
T ss_pred cccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh---cCCcEEEEEEeCCCCCCCCcCCCHHHHHHHH
Confidence 111221110 000 0135556666643 223576766654466668766 788899999
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH--HHHH
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS--CARK 303 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~--~~~~ 303 (483)
++|++||+++|.||+..++...+ .+.....+.- .....+ -+++|.+|-.| ++++ .+.+.. ....
T Consensus 279 ~lc~~~g~lLI~DEV~tGfGrtG--~~fa~e~~gv-----~~~PDi--~t~gK~lg~gG----~~~~-~~~~~~~~~~~~ 344 (464)
T TIGR00699 279 DITKKHNVAFIVDEVQTGVGATG--KFWAHEHWNL-----DDPPDM--VTFSKKFQTAG----YFFH-DPAFRPNKPYRQ 344 (464)
T ss_pred HHHHHcCCEEEEeeeeeCCCCCc--chhHHHhcCC-----CCCCCE--EEehhhhccCC----cccc-chhccCCCCccc
Confidence 99999999999999997743222 2112221110 101222 37799985234 4444 222110 0001
Q ss_pred hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CC--ceeec-CCceEEEeeecCchhhc
Q 011570 304 MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VG--IGCLK-SNAGLFLWMDLHHLLKE 376 (483)
Q Consensus 304 ~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g--i~~~~-~~~g~f~~~~l~~~~~~ 376 (483)
...+ ..++.+.+++.+.|..-. + ....+..++.-+++.+.|++ ++ +.... ..-|+++-++++..
T Consensus 345 ~~T~-~gnp~~~aaa~a~L~~l~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--- 415 (464)
T TIGR00699 345 FNTW-MGDPSRALILREIIQEIK--R---KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--- 415 (464)
T ss_pred ccCC-CCCHHHHHHHHHHHHHHH--h---cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH---
Confidence 1122 245555555544442110 0 11112222222333333333 22 11111 13467887887531
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
.....+.+.+++ +||++.+. +.+.+||.... ++++++++++++|.+++
T Consensus 416 ---~~~~~i~~~~~~-~Gvl~~~~------g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 416 ---AKRDKLLKKARN-NGVNIGGC------GVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred ---HHHHHHHHHHHH-CCcEEecC------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 112356777775 59998753 23679999976 59999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=119.22 Aligned_cols=274 Identities=14% Similarity=0.152 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCC--CeEEEeCCCCcChHHHHhhh---cCcEEEEe
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPG--DAFLVPTPYYPGFDRDLRWR---TGVQLVPV 171 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~g--d~Vlv~~P~y~~~~~~~~~~---~G~~~~~v 171 (483)
+++..||++.+ .+++|+.++.++|.+...++.++ +.+| |+|++++-.|+.+...++.. .|++++.+
T Consensus 152 ~~Qt~ia~LtG--------~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v 223 (993)
T PLN02414 152 NYQTMITDLTG--------LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVA 223 (993)
T ss_pred HHHHHHHHHhC--------CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEe
Confidence 44555555544 68999999999999999888776 3444 78999999999887665432 48999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+.. + .. +..+-.+++.+|++ +|.+.+ +++|++.|+++|+++++ .+... .- ..
T Consensus 224 ~~~~~-----~------~~------~~~v~~vlvq~P~~-~G~v~d---v~~I~~~ah~~GaL~iV-aad~l---al-~~ 277 (993)
T PLN02414 224 DEKDF-----D------YS------SGDVCGVLVQYPAT-DGEVLD---YAEFVKNAHANGVKVVM-ATDLL---AL-TM 277 (993)
T ss_pred cchhh-----c------cc------cCceEEEEEecCCC-CeEEcC---HHHHHHHHHHcCCEEEE-EECHH---Hh-cC
Confidence 86431 1 00 01344555556654 999987 88999999999999999 44321 11 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCcccc---CCCCceEEEEEecChHHHHHHH-Hhhh---------------------
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDM---GFPGFRVGIIYSYNDQVVSCAR-KMSS--------------------- 306 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~---g~~GlRiG~li~~~~~l~~~~~-~~~~--------------------- 306 (483)
..+... .+..|++++..|.. |..|-+.|++.+.++ +.+.+. .+..
T Consensus 278 l~~pge---------~GADi~vgsgqKwg~P~G~GGP~aGflavr~~-~~r~~PgriVG~s~d~~g~~~~~l~LqtReqh 347 (993)
T PLN02414 278 LKPPGE---------WGADIVVGSAQRFGVPMGYGGPHAAFLATSQE-YKRLMPGRIIGVSVDSSGKPALRMAMQTREQH 347 (993)
T ss_pred CCCHhh---------ccCcEEEECCCccccCCCCCCCCeeEEEECHH-HHhhCCCcccCcccCCCCCcccccccccccch
Confidence 112222 25567788888874 335566999999543 333221 0000
Q ss_pred ----cCCCChHHHHHHHHhcCCh--hH-HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC-ceEEEeeecCchhhccC
Q 011570 307 ----FGLVSSQTQHLIATMLSDD--QF-VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN-AGLFLWMDLHHLLKEQT 378 (483)
Q Consensus 307 ----~~~~s~~~q~~~~~~l~~~--~~-~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~-~g~f~~~~l~~~~~~~~ 378 (483)
.++.+.-+..++.+.+... .+ -..-+++..+++.++..++.+.|...|+++..+. .+ -+.++++.
T Consensus 348 iRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~~~~~~~f~-~vt~~~~~------ 420 (993)
T PLN02414 348 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQVQSLPFFD-TVKVKCSD------ 420 (993)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCcC-eEEEecCC------
Confidence 0111111111222222110 00 0111455566777788888899988887765432 22 22334431
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
..++.++|. ++||.++... ++.+|+|+.. .++++++.+++.|+.
T Consensus 421 ---~~~v~~~L~-~~gI~l~~~~------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 421 ---ADAIADAAA-KVGINLRVVD------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ---HHHHHHHHH-HCCCeeEEec------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 135667776 5599776321 3569999977 599999999999963
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-08 Score=102.86 Aligned_cols=277 Identities=12% Similarity=0.052 Sum_probs=149.6
Q ss_pred CCcEEEeCChhHHHHHHHHHhc----------C-C---CCeEEEeCCCCcChHHHHhhhcCcE-EE--Eeec--------
Q 011570 119 PDRIVMSGGATGAHETVAFCLA----------D-P---GDAFLVPTPYYPGFDRDLRWRTGVQ-LV--PVVC-------- 173 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~----------~-~---gd~Vlv~~P~y~~~~~~~~~~~G~~-~~--~v~~-------- 173 (483)
.+.+++++++++|+..++.... + + +.+|+...-+|.+.........|.. .. ..|.
T Consensus 103 ~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~ 182 (431)
T TIGR03251 103 LPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDN 182 (431)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCC
Confidence 4689999999999999887652 1 1 3679999988877554332222311 00 0010
Q ss_pred CCC-CCc-----c-------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 174 DSS-NDF-----K-------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 174 ~~~-~~~-----~-------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
... .++ . -+++.+++.+.. .+.++.+|++.-...-.|.+ .+.+.+++|.++|++||+++|+||
T Consensus 183 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DE 259 (431)
T TIGR03251 183 PKLTFPLDAPNLDQVIALEEEALRQARAAFAE---RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDE 259 (431)
T ss_pred CcccCCccccccchhhHHHHHHHHHHHHHHHh---CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 000 000 0 123344444432 23467777766545556765 578889999999999999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH-H------hhhcCCCCh
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-K------MSSFGLVSS 312 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~-~------~~~~~~~s~ 312 (483)
++.++...+ .+.....+.- .+| ++ +++|.+ +. .|++.. .+ +.+... . .......++
T Consensus 260 V~tG~GrtG--~~~a~~~~gv-----~PD--i~--~~gK~~--~~--~g~~~~-~~-i~~~~~~~~~~~~~~~~T~~gnp 322 (431)
T TIGR03251 260 VQTGVGLTG--TAWAYQQLGV-----QPD--IV--AFGKKT--QV--CGIMAG-RR-VDEVADNVFAVPSRLNSTWGGNL 322 (431)
T ss_pred chhccCccc--hHHHHHhcCC-----CCC--EE--EecccC--cc--ceEEec-ch-HHHhhhhcccCccccCCCCCCCH
Confidence 998743332 1112111110 222 22 578986 22 356654 32 211111 0 111122456
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 313 QTQHLIATMLSD---DQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 313 ~~q~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
++..++.+.|+- .+. .+..+++-+++ ++.+.+...+.+ +......-|+++.++++.. .....+...
T Consensus 323 l~~aaa~a~L~~l~~~~l-~~~~~~~g~~l---~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~------~~~~~~~~~ 392 (431)
T TIGR03251 323 VDMVRATRILEIIEEERL-VDNARVQGAHL---LARLHELAAEFPHLVSNPRGRGLMCAFDLPST------ADRDEVIRQ 392 (431)
T ss_pred HHHHHHHHHHHHHHhcCH-HHHHHHHHHHH---HHHHHHHHHhCccceecccccceeEEEEeCCH------HHHHHHHHH
Confidence 665555555432 221 11222222222 222322222232 3222223356777887632 112356777
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
++ ++||.+.|.. .+.+|++... .+++++++++++|.+
T Consensus 393 l~-~~Gvl~~~~g------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 393 LY-REGVLLLGCG------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred HH-hCCeEEecCC------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 77 5699997642 2468988876 599999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-09 Score=115.01 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=162.7
Q ss_pred cCCCcEEEeCChhHHHHHHHHHh-cCC--CCeEEEeCCCCcChHHHHhh---hcCcEEEEeecCCCCCcccCHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCL-ADP--GDAFLVPTPYYPGFDRDLRW---RTGVQLVPVVCDSSNDFKVTMEALEAAY 190 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l-~~~--gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~i 190 (483)
.+++|+.+..+++.+...++.++ ..+ +|+|++++-.|+.....++. ..|++++.++.+++ ++
T Consensus 136 ~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d----~~-------- 203 (954)
T PRK05367 136 LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKA----LD-------- 203 (954)
T ss_pred CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccC----CC--------
Confidence 68899999999999999888776 344 48999999999987765432 24999999986531 11
Q ss_pred HHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeE
Q 011570 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270 (483)
Q Consensus 191 ~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~v 270 (483)
. .++.++++.+|+ -+|.+.+ +++|++.|+++|+++++|-....+... .+.. ..+..
T Consensus 204 ~------~~~~~vlvq~p~-~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l-----~~pg---------e~GaD 259 (954)
T PRK05367 204 H------DDVFGVLLQYPG-TSGEVRD---YTALIAAAHARGALVAVAADLLALTLL-----TPPG---------EMGAD 259 (954)
T ss_pred c------ccEEEEEEecCC-CCeeecc---HHHHHHHHHHcCCEEEEEehhhhccCC-----CChh---------hcCCC
Confidence 0 155667777774 5999987 889999999999999998754222111 1111 23556
Q ss_pred EEEecCccc-----cCCCCceEEEEEecChHHHHHHH-Hhh-----------------------hc--CCCCh-HHHHH-
Q 011570 271 HIVYSLSKD-----MGFPGFRVGIIYSYNDQVVSCAR-KMS-----------------------SF--GLVSS-QTQHL- 317 (483)
Q Consensus 271 i~~~S~SK~-----~g~~GlRiG~li~~~~~l~~~~~-~~~-----------------------~~--~~~s~-~~q~~- 317 (483)
|+++|..|. ||-|| .|++.+. +.+.+.+. .+. .+ ++.|. ..|..
T Consensus 260 i~vgs~qkfg~P~g~GGP~--aGflavr-~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~ 336 (954)
T PRK05367 260 IAVGSAQRFGVPMGFGGPH--AAYFAVR-DAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLL 336 (954)
T ss_pred EEEeeCcccCCCCCCCCCC--EEEEEEC-HHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHH
Confidence 788888887 54454 8999985 43433321 000 00 11111 11111
Q ss_pred -HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 318 -IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 318 -~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+.+.+--.-+-..-+++..++...+..++.+.|.+.|+++..+.-.--+.++++. ...++.++|++ +||.
T Consensus 337 a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~~~f~~~~~~~~~--------~~~~i~~~l~~-~gi~ 407 (954)
T PRK05367 337 AVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHDSFFDTLTVEVGG--------DAAAVLARALA-AGIN 407 (954)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCCeEEEeCCC--------CHHHHHHHHHH-CCce
Confidence 1111000000012245566677778888899998778776533211122233321 13367777775 5998
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHH
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~ 431 (483)
++. . .++.+|+|+.. .++++++.+++.|.
T Consensus 408 ~~~---~---~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 408 LRR---V---DDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred ecc---c---cCCEEEEEecccCCHHHHHHHHHHHc
Confidence 732 1 14579999976 59999999999997
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-09 Score=103.70 Aligned_cols=290 Identities=14% Similarity=0.118 Sum_probs=161.0
Q ss_pred CCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcC-------------cEEEEeecCCC-
Q 011570 119 PDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTG-------------VQLVPVVCDSS- 176 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G-------------~~~~~v~~~~~- 176 (483)
-+.|++|+|+++++..++.... +|. .+++.-..+|.+-.-..-...| ..+..+|.+..
T Consensus 105 l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y 184 (449)
T COG0161 105 LDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAY 184 (449)
T ss_pred ccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCccc
Confidence 5789999999999999886542 232 3488888888653221111111 01112222110
Q ss_pred -----CCcc----cCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 177 -----NDFK----VTMEALEAAYEKAQESNIRIKGVLITNP--SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 177 -----~~~~----~d~~~l~~~i~~~~~~~~~~~~i~l~~P--~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
+.+. -..++|++.|.. +++..-+-++.-| ..-+|.++ ++..++++.++|++||+++|.||+-.++
T Consensus 185 ~~~~~~~~~~~~~~~a~~le~~i~~---~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGF 261 (449)
T COG0161 185 RRGFFGEGDEEFAEAADELEALILE---HGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGF 261 (449)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHh---cCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCC
Confidence 1111 225566666655 3423334455566 34477765 5557999999999999999999998874
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhc-----CCCChHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSF-----GLVSSQTQHL 317 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~-----~~~s~~~q~~ 317 (483)
-.++ +.| ......- .+| |+ +++|.++-.=+.+|.+++ .+.+.+.+.. ...+ ++.++++.++
T Consensus 262 GRTG-~~F-A~e~~gi-----~PD--i~--~~aKGLT~GY~Pl~a~l~-~~~I~~~~~~~~~~~f~HG~TYsghPlacAa 329 (449)
T COG0161 262 GRTG-KMF-ACEHAGI-----VPD--IL--CLAKGLTGGYLPLSAVLT-SDRIYEAFSDGDAGAFMHGHTYSGNPLACAA 329 (449)
T ss_pred CcCc-hhh-hhhhcCC-----CCC--ee--eecccccccchhhHhHhh-hHHHHHHHhcccCCeeccCCccccCHHHHHH
Confidence 3333 222 1111110 222 22 678988634467777777 4555555433 2222 3345655554
Q ss_pred HHHhc---CChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccC---hHHHHHHHH
Q 011570 318 IATML---SDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQT---YEAEMALWR 387 (483)
Q Consensus 318 ~~~~l---~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~---~~~~~~~~~ 387 (483)
+.+.| .++++ + ++.++.-.++.+.|.+ +..--....-|++.-+++......+. ......+..
T Consensus 330 Ala~L~i~e~e~l----~----~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~ 401 (449)
T COG0161 330 ALANLDILEEEDL----L----ERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRA 401 (449)
T ss_pred HHHHHHHHHhcCH----H----HHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHH
Confidence 44333 22332 2 2223333444444443 21222234456777778765433221 111223444
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 388 VIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..+ ++|+.++|.. ..+=++... +++++++++++++.++++....
T Consensus 402 ~~~-e~Gl~iRp~g-------~~i~~~PPliit~~eid~l~~~l~~al~~~~~ 446 (449)
T COG0161 402 AAL-ERGLLIRPLG-------DVIYLMPPLIITREEIDELVDALREALDETLA 446 (449)
T ss_pred HHH-HCCeEEeecC-------CEEEEcCCccCCHHHHHHHHHHHHHHHHHHHh
Confidence 444 5699999862 245566655 4999999999999999987643
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-08 Score=101.51 Aligned_cols=148 Identities=18% Similarity=0.258 Sum_probs=113.5
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC----C-----------------------
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD----P----------------------- 142 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~----~----------------------- 142 (483)
|...++...+.+.+.+|+.+..|. +...=.+|+|+|+++...+.+..+ |
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~----~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~ 190 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGY----KNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMP 190 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCC----CCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccc
Confidence 334456789999999999999883 334456889999888766544311 0
Q ss_pred -------------------------C------CeEEEeCCCCcChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHH
Q 011570 143 -------------------------G------DAFLVPTPYYPGFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEA 188 (483)
Q Consensus 143 -------------------------g------d~Vlv~~P~y~~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~ 188 (483)
| -+|+++.-.|.++..++..+ |. .++.||+++ ++.+|++.|++
T Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il-GlG~~~vv~VpvD~--~~rmd~~~L~~ 267 (608)
T TIGR03811 191 TKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII-GIGLDQVIPVPVDS--NYRMDINELEK 267 (608)
T ss_pred cccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc-CCCcccEEEeecCC--CCcCCHHHHHH
Confidence 0 05788888888888888876 87 589999875 57999999999
Q ss_pred HHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCc--EEEEccccccC
Q 011570 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNI--HLVCDEIYAAT 244 (483)
Q Consensus 189 ~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~--~iI~Deay~~~ 244 (483)
.|++..+++..+-+|+.+-....+|.+=+.+++.+|++.++++|+ |+.+|.||+++
T Consensus 268 ~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~ 325 (608)
T TIGR03811 268 IIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY 325 (608)
T ss_pred HHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccch
Confidence 999877777666667777788899999996666666665578887 69999999984
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-08 Score=107.72 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=129.9
Q ss_pred HHHHHHHHHHH--hcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh
Q 011570 184 EALEAAYEKAQ--ESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII 259 (483)
Q Consensus 184 ~~l~~~i~~~~--~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~ 259 (483)
+.+++.|.+.. ..+.++.+|++.-. +.-.|.++ +.+.++++.++|++||+++|.||++.++...+ . +.....+.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG-~-~fa~e~~g 644 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG-V-ESAWELLG 644 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc-c-hhhHHhcC
Confidence 44555554311 11235666665542 56668765 67889999999999999999999998853333 2 22222221
Q ss_pred hhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH--------hhhcCCCChHHHHHHHHhcC---ChhH
Q 011570 260 DQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK--------MSSFGLVSSQTQHLIATMLS---DDQF 327 (483)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~--------~~~~~~~s~~~q~~~~~~l~---~~~~ 327 (483)
- .+| |+ +++|.++ .| +.+|.+++ .+++.+.+.. ....+..++++.+++.+.|+ +.+.
T Consensus 645 v-----~PD--Ii--~~gKgLt-gG~~Plaa~l~-~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~ 713 (817)
T PLN02974 645 C-----KPD--IA--CYAKLLT-GGLVPLAATLA-TEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPST 713 (817)
T ss_pred C-----CCC--EE--eeccccc-CCCCccEEEEE-cHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccH
Confidence 1 222 32 6789998 89 69999999 5666666531 01112356666666544443 3322
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhcCCceeecCCceEEEeeecCchhhccC--hHHHHHHHHHHHHhcCeEeeCCCCCC
Q 011570 328 VEKFIAESAKRIAER-HKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQT--YEAEMALWRVIINEVKLNVSPGSSFH 404 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~-~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~--~~~~~~~~~~Ll~~~gV~v~pg~~f~ 404 (483)
..+ +.+....+.+. .+.+.+.|.++..-.....-|+++-+++........ ......+.+.++.++||.++|..
T Consensus 714 ~~~-l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~G--- 789 (817)
T PLN02974 714 NPN-LIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPLG--- 789 (817)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEecC---
Confidence 111 22222222211 123333444443211222335677787753211111 11123556666636799998731
Q ss_pred CCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 405 CPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 405 ~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+.+|+.... ++++++++++++|.+.+
T Consensus 790 ----nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 790 ----NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred ----CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 468886654 59999999999998765
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-08 Score=100.77 Aligned_cols=288 Identities=16% Similarity=0.140 Sum_probs=173.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
..++-+.+.+.+.+.++ ++-+.+-+++..|++.++..++..|+.+||++++...++.+ +...++.. |...+....
T Consensus 50 f~~i~~~~~~~L~~l~~--~p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~-g~~~~~~~~ 126 (365)
T PLN02452 50 FLSIIQKAEADLRELLD--IPDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKY-CKTNVIASG 126 (365)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHh-CCCcEEEec
Confidence 45555566666666655 21122335666889999999999999999998888766533 22334444 653333321
Q ss_pred CCCCCc--ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 174 DSSNDF--KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 174 ~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.++| .+++++++. +++++.|.+|+-...||..+. .+.++. ++++|+|.+-. +.. .+
T Consensus 127 -~~~~~~~~~~~~~~~~--------~~~~~~v~~~hnETstGv~~~--~~~~i~------~~~lvVDa~Ss---~g~-~p 185 (365)
T PLN02452 127 -KDEKYTKIPSVSEWEL--------TPDAKFVHICANETIHGVEFK--DYPDVG------NVPLVADMSSN---FLS-KP 185 (365)
T ss_pred -CCCCCCCCCChHHcCC--------CCCCcEEEECCCCCCCcEecC--cccccC------CCeEEEECCcc---ccC-cc
Confidence 12222 355655421 236788888888889999633 133332 27999999976 343 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--------------hhhcCCCChHHHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--------------MSSFGLVSSQTQHL 317 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--------------~~~~~~~s~~~q~~ 317 (483)
.++..+ + ++ ..|..|.+|.+| +|.+++.++.+.. ... ...+++++.....+
T Consensus 186 -idv~~~---------~-v~-~~saqK~lGP~G--l~~v~vr~~~l~~-~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~ 250 (365)
T PLN02452 186 -VDVSKY---------G-VI-YAGAQKNVGPSG--VTIVIIRKDLIGN-ARPITPGMLDYKIHAENDSLYNTPPCFGIYM 250 (365)
T ss_pred -cCHHHc---------C-EE-EEecccccCCCC--eEEEEEcHHHHhh-cccCCCchhhHHHHHhcCCccCChhHHHHHH
Confidence 343322 3 23 359999999888 7888885444322 111 01112233333344
Q ss_pred HHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHhhhcC-Cc-ee-ecC--CceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 318 IATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQV-GI-GC-LKS--NAGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 318 ~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~-gi-~~-~~~--~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
+..+++ |+.+ -++...++.++..+++.+.|.+. |+ .. ..+ ...+.+.+.++.. ....+|.+.+.
T Consensus 251 l~~aL~---~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~------~~~~~f~~~~~ 321 (365)
T PLN02452 251 CGLVFE---DLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGS------ELEAEFVKEAA 321 (365)
T ss_pred HHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCc------hhHHHHHHHHH
Confidence 444432 2332 25667778888889999999875 66 11 111 2445666676642 12335666554
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++|+...+|..-- .+ +|+++=. ++.++++.+++.++++-++
T Consensus 322 -~~g~~~~~G~r~~---gg-~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 322 -KAGMVQLKGHRSV---GG-MRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred -HCCCcccCCcccc---Cc-eEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 6699999987532 23 9999933 7999999999888887655
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-08 Score=93.96 Aligned_cols=306 Identities=14% Similarity=0.125 Sum_probs=170.8
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhhc
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~~ 164 (483)
..|..++ ..+|-++++..+- -+-.-++++|+++||..+++... .+. -.|+-...+|.+......-+.
T Consensus 87 ~~~~~~p-i~~~Ae~L~s~~P--------~~l~~vfF~nsGsEANelal~mar~Yt~~-~diIa~r~~YHG~t~~t~glt 156 (442)
T KOG1404|consen 87 SGYLNPP-IHDLAEALVSKLP--------GDLKVVFFVNSGSEANELALKMARLYTGN-LDIIARRNSYHGNTLYTLGLT 156 (442)
T ss_pred ccccCCc-HHHHHHHHHHhCC--------CCceEEEEecCCchHHHHHHHHHHHhcCC-ceEEEeeccccCCchhhcccc
Confidence 3454433 5778888777653 24456999999999999988553 233 356666667765443322222
Q ss_pred CcEEEEeecC--------------CCCCcccC-----H----HHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCC-CCHH
Q 011570 165 GVQLVPVVCD--------------SSNDFKVT-----M----EALEAAYEKAQESNIRIKGVLITNP-SNPLGTF-LDRE 219 (483)
Q Consensus 165 G~~~~~v~~~--------------~~~~~~~d-----~----~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~-~~~~ 219 (483)
|......+.+ ..+.|.=+ - +.+++.+.. .++..-+-++.-| +.-.|.+ ++.-
T Consensus 157 ~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~---~~~~~vAafiaEtIqGvgG~v~~p~G 233 (442)
T KOG1404|consen 157 GLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILY---DGPETVAAFIAETIQGVGGIVELPPG 233 (442)
T ss_pred cCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHh---cCCCceeEEEeehhccCCccccCCch
Confidence 3222111111 00111111 2 334444432 1223333455544 5544554 4667
Q ss_pred HHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH
Q 011570 220 TLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS 299 (483)
Q Consensus 220 ~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~ 299 (483)
.+++..+.|+++|.++|.||+..+ |+....++++.+. +.+==+-|++|.+| .|+.+|.++. .+++.+
T Consensus 234 Ylka~~~~v~k~Ggl~IaDEVqtG--fGRtG~~wgfe~h---------~v~PDIvTmAKgiG-nG~Pl~AVvt-t~EIa~ 300 (442)
T KOG1404|consen 234 YLKAAYKVVRKRGGLFIADEVQTG--FGRTGHMWGFESH---------GVVPDIVTMAKGIG-NGFPLGAVVT-TPEIAD 300 (442)
T ss_pred HHHHHHHHHHHcCCEEEehhhhhc--ccccccccccccc---------CCCccHHHHHhhcc-CCCcceeeec-CHHHHH
Confidence 899999999999999999999988 4442233343322 11111339999999 9999999998 566777
Q ss_pred HHHHhh-hc--CCCChHHHHHHHHhcCC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeec
Q 011570 300 CARKMS-SF--GLVSSQTQHLIATMLSD--DQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDL 370 (483)
Q Consensus 300 ~~~~~~-~~--~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l 370 (483)
.+.+.. .+ ...++++.++..++|.- .+.+++...+.- .+|.+.|.++ .+.-....-|+++-+++
T Consensus 301 v~~~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG-------~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~ 373 (442)
T KOG1404|consen 301 VLNQKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVG-------SYLLEKLAALKDKHPIIGDVRGRGLMLGVEL 373 (442)
T ss_pred HHHhccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHhhcCCceeecccceeEEEEEE
Confidence 765544 22 23566666555555432 111233333333 3344444433 22223345567887777
Q ss_pred Cchh-hccChH-HHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 371 HHLL-KEQTYE-AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 371 ~~~~-~~~~~~-~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
-+.. +..... ....+..+-.+++|++|--|..++ ..+||+... +|.++++.+++..
T Consensus 374 V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G----~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 374 VSDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHG----NVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred ecccCCCCCcchHHHHHHHHHHHHhCeeeecccccc----eEEEecCCeeccHHHHHHHHHHH
Confidence 4322 111111 122333444457799997776654 289999965 5999997666654
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-09 Score=101.21 Aligned_cols=312 Identities=16% Similarity=0.201 Sum_probs=184.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
-|+...-+.+|.+.||+|++ ..+.|+...|-+ .+..++.+++.+||.|.+.+-........++.. .-.+
T Consensus 134 FYGt~DvHldlE~~iakF~G---------~E~aivYs~gF~-ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlS-RS~i 202 (467)
T KOG1358|consen 134 FYGTIDVHLDLEKRIAKFMG---------TEDAIVYSYGFS-TIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLS-RSTI 202 (467)
T ss_pred ccccceeecccHHHHHHhhC---------Ccceeeeccccc-hhhhcchhhhccCcEEEEehhhhHHHHHHHhhh-hhee
Confidence 46666557899999999998 567788877755 567788999999999999988777676666654 5556
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHH---hcCC---ceeE-EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQ---ESNI---RIKG-VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~---~~~~---~~~~-i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
+.+.. .|.+.++..+.+.. .+++ .++- |++.----+||.+.+ +.+|+++..+|...||.||.|
T Consensus 203 ~~Fkh-------ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~lk~Kyk~RvildEs~ 272 (467)
T KOG1358|consen 203 SYFKH-------NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVKLKNKYKFRVILDESL 272 (467)
T ss_pred EEecC-------CCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHHHHhhheEEEEEeccc
Confidence 55553 35677766554321 1111 1232 333344567999999 888888888999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc-C--CCChHHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF-G--LVSSQTQHL 317 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~-~--~~s~~~q~~ 317 (483)
+..+.+.... .+.+... ++ ..+..++++|++-+++..| |++.+ ...+...-+-.. .+ . ..++....+
T Consensus 273 SfG~lg~~Gr--GvteH~~-v~--~~~iDiv~~sm~~alas~G---gFc~G-~~~i~~hQrLSg~~Y~fSAslPp~la~a 343 (467)
T KOG1358|consen 273 SFGVLGKTGR--GVTEHFG-VP--ITDIDIVTASMETALASGG---GFCAG-KSFIADHQRLSGSGYCFSASLPPYLAGA 343 (467)
T ss_pred ccccccccCc--cccccCC-CC--ccceeeeeecccccccccC---ceeec-ceeeEeeeeccccceeeeccCchhhhhh
Confidence 8655443111 1111110 00 1355678899999887666 78887 444333221111 11 1 122222223
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccCh--HHHHHHHHHHHHhcC
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTY--EAEMALWRVIINEVK 394 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~--~~~~~~~~~Ll~~~g 394 (483)
+...+.-.++ -.+..+.++.....+...|... ++.+....-...+.+.+......... .--.++....+.+ |
T Consensus 344 a~~ai~i~~~----~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~-~ 418 (467)
T KOG1358|consen 344 AIKAILIEEW----NPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAE-G 418 (467)
T ss_pred HHHHHHHHhh----CcchhhhhhccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhh-c
Confidence 3333322221 1223344555555566666655 56666554455666666543222211 1112344555555 7
Q ss_pred eEeeCCCCCCC----CCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 395 LNVSPGSSFHC----PNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 395 V~v~pg~~f~~----~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
+++.....-.. .-+.-+||++.. .++|+++++...|++...
T Consensus 419 ~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~ 464 (467)
T KOG1358|consen 419 VLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS 464 (467)
T ss_pred ceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 77654432211 113359999965 699999999999987654
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-08 Score=93.75 Aligned_cols=233 Identities=19% Similarity=0.221 Sum_probs=127.5
Q ss_pred CChhHHHHHHHHHhcCCCCeEEE-eCCCCcChHHHHhhh---------cCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 126 GGATGAHETVAFCLADPGDAFLV-PTPYYPGFDRDLRWR---------TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv-~~P~y~~~~~~~~~~---------~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
-++|++|..++..+++|||+++. ...-|......+... .|++...+++.+++ .+|.+.++++++.
T Consensus 79 vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~--- 153 (403)
T PF06838_consen 79 VSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDG--TIDWEAIKKALKP--- 153 (403)
T ss_dssp -SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTS--SB-HHHHHHHHHT---
T ss_pred cchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCC--CcCHHHHHHhhcc---
Confidence 46899999999999999999884 445577666665321 37899999998755 7999999999984
Q ss_pred cCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 196 SNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 196 ~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
++|+|++. +-..-+=..++.++++++++++++. ++++++|.+|+++ .+..++ . ...-.++
T Consensus 154 ---~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF--vE~~EP-~-----------~vGADl~ 216 (403)
T PF06838_consen 154 ---NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF--VETQEP-T-----------EVGADLM 216 (403)
T ss_dssp ---TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT--TSSS-G-G-----------GGT-SEE
T ss_pred ---CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee--ccccCc-c-----------ccchhhe
Confidence 89999887 3344455568999999999999774 7899999999995 431221 1 1244578
Q ss_pred EecCccccCCCCce--EEEEEecChHHHHH-HHHhhhcCCCC--hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFR--VGIIYSYNDQVVSC-ARKMSSFGLVS--SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 273 ~~S~SK~~g~~GlR--iG~li~~~~~l~~~-~~~~~~~~~~s--~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 347 (483)
.+|+=|..| .|+- -||+++. +++.+. ..++..++... ..+.-....+++ +-++..+. ...--+-..+..
T Consensus 217 aGSLIKNpG-GgiAptGGYIaGr-~~lVe~~a~RLTaPGiG~e~G~t~~~~R~~~Q-GlFlAP~v---V~eAlKgaif~A 290 (403)
T PF06838_consen 217 AGSLIKNPG-GGIAPTGGYIAGR-KDLVERAAYRLTAPGIGKEVGATLGTNRLMFQ-GLFLAPHV---VGEALKGAIFAA 290 (403)
T ss_dssp EEETTSGGG-TTT-SS-EEEEES-HHHHHHHHHHHS-TTTGGGSS--TTTHHHHHH-HHHHHHHH---HHHHHHHHHHHH
T ss_pred eccceeCCC-CCccCcCCEEech-HHHHHHHHhhhcCCccccccccCcchHHHHHh-HHhhchHH---HHHHHHHHHHHH
Confidence 999999987 5532 4799995 555444 44444332100 000000001111 11211111 111122234455
Q ss_pred HhhhcCCceeecCC----ceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 348 WGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 348 ~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
..|+++|+++.|.. .-....+++... +.-..||+.+.+.
T Consensus 291 ~~fe~lG~~v~P~~~~~R~DiIQai~l~~~------e~l~~FC~~iQ~~ 333 (403)
T PF06838_consen 291 ALFEKLGFEVSPKPDDPRSDIIQAIELGSP------EKLIAFCQGIQAA 333 (403)
T ss_dssp HHHHHTT-EEES-TTS--SSS-EEEE-SSH------HHHHHHHHHHHHT
T ss_pred HHHHHcCCcCCCCCCCCCCceEEEEECCCH------HHHHHHHHHHHhc
Confidence 66777899887643 334555555532 2234677766543
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-07 Score=90.47 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC---CC-----CeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD---PG-----DAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~---~g-----d~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
-++.+.+.+.+++ -+++.|++.|.+++|+..++....+ .+ ..|+....+|.+-...+...++...
T Consensus 101 v~l~~~l~~~~~~-------~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~ 173 (433)
T KOG1401|consen 101 VELEEVLSAVLGK-------GSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSK 173 (433)
T ss_pred HHHHHHHHhcccC-------CCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccc
Confidence 4445555554432 2789999999999999998865421 11 2488888888664333222123322
Q ss_pred EEeecCCC------CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 169 VPVVCDSS------NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 169 ~~v~~~~~------~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
...|.++- ..+ -|.+.+++.++.+ ...+.+|++.--.--.|... +++.+..|.+.|+++|+++|.||+.
T Consensus 174 y~~~~~p~~p~v~~~~y-nd~t~l~k~~~~h---~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~ 249 (433)
T KOG1401|consen 174 YGLPFDPIAPDVVTAEY-NDSTALEKLFESH---KGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ 249 (433)
T ss_pred cCCCCCCCCCceeeccc-CCHHHHHHHHHhC---CCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence 22222110 011 2688999988763 12366666654465566644 7788999999999999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-----CCCChHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-----GLVSSQTQH 316 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-----~~~s~~~q~ 316 (483)
-++...+ . .-..++.. ..+| +.++.|.+| .|+.+|..++ .+.+.+.+..-.++ .+.++++..
T Consensus 250 tG~gR~g-~--~~a~e~~~----~~PD----I~t~aK~L~-gGlPigA~~v-~~kV~~~i~~~~~l~hg~Tf~gnpLacs 316 (433)
T KOG1401|consen 250 TGLGRLG-Y--GWAQEYFG----VTPD----ITTVAKPLG-GGLPIGATGV-RDKVAEMISPGDHLYHGGTFSGNPLACS 316 (433)
T ss_pred hCccccc-h--HHHHHHhC----cCCc----ceeehhhcc-CCceeEEEee-hHHHHhhcCCCCccccCcccCCChhhhh
Confidence 8753333 1 22233322 0223 347899998 9999999998 56666665432221 234666665
Q ss_pred HHHHhc---CChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CceeecCCceEEEeeecCchhhcc--ChHHHHHH----
Q 011570 317 LIATML---SDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLKSNAGLFLWMDLHHLLKEQ--TYEAEMAL---- 385 (483)
Q Consensus 317 ~~~~~l---~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~~~~g~f~~~~l~~~~~~~--~~~~~~~~---- 385 (483)
++...+ .++++ +++...+-+..++.+.+.+.+. ++.-. -..++++.+.+....... .-.....+
T Consensus 317 a~~~~l~~l~~~e~----~k~vs~~~k~L~~~l~e~~~~~~~~i~g~-~grgl~ig~~~~~p~~~~~d~~~~~~ll~~~~ 391 (433)
T KOG1401|consen 317 AGIKVLDELKDPET----LKNVSKIGKELRKLLDEYLKKTPNSICGG-VGRGLVIGFEFEGPVYKFADAAREQGLLILTL 391 (433)
T ss_pred HHHHHHHHHcCHHH----HHHHHHHHHHHHHHHHHHhccCCCceeee-eeeEEEEEEEEeechhhhhhhhhhhhHHHHHH
Confidence 555444 34444 3444444445555566666554 23322 233455554443211110 00001111
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
..-+++ .||.++| . ++ +++. .++|.++.+++.+.+.+.+..
T Consensus 392 ~~~~~~-~gv~i~P--~-------~~-l~~~-~~~E~i~~~l~i~~~~l~~~~ 432 (433)
T KOG1401|consen 392 GKGLLE-EGVRIAP--I-------YL-LTVE-HTPEVIQRLLTILEKVLSALN 432 (433)
T ss_pred hccccc-ceEEEec--c-------cc-cccc-CcHHHHHHHHHHHHHHHHHhc
Confidence 111221 2444444 0 00 2222 358889999999988887653
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=101.17 Aligned_cols=210 Identities=16% Similarity=0.111 Sum_probs=122.3
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CC-CCeEEEeCCCCcChHHHHhhhcC-
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DP-GDAFLVPTPYYPGFDRDLRWRTG- 165 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~-gd~Vlv~~P~y~~~~~~~~~~~G- 165 (483)
...+...++++.+.+..+ -..+.+++++++++++..++.... .+ -.+|+...-+|.+.........+
T Consensus 56 ~~~~~~~~la~~L~~~~p----~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~ 131 (339)
T PF00202_consen 56 FTHPEAAELAEKLAELFP----GGLDRVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGN 131 (339)
T ss_dssp SEEHHHHHHHHHHHHHSS----TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSS
T ss_pred eeccchhhhhhhhhhccc----cccceeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCC
Confidence 346677778888776642 245689999999999999997765 22 36899999888764332211101
Q ss_pred -----------cEEEEeecCCCCC---cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhh
Q 011570 166 -----------VQLVPVVCDSSND---FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINE 230 (483)
Q Consensus 166 -----------~~~~~v~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~ 230 (483)
..+..+|.++... ..-....+++.+.+.. ..++.+|++..-..-.|.. .+.+.+++|.++|++
T Consensus 132 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~ 209 (339)
T PF00202_consen 132 PPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALN--ADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCRE 209 (339)
T ss_dssp THHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhc--CCcEEEEEEeccccccCccccccchhhehcccccc
Confidence 2345555442110 0001222344433322 2356666655434445654 467789999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcC
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFG 308 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~ 308 (483)
||+++|.||++.++...+ . +.....+.- .+| ++ +++|.++ .|+.+|.+++ .+.+.+.+.... ..+
T Consensus 210 ~gillI~DEV~tG~gRtG-~-~~a~~~~gv-----~PD--iv--~~gK~l~-gG~p~sav~~-~~~i~~~~~~~~~~~T~ 276 (339)
T PF00202_consen 210 HGILLIADEVQTGFGRTG-K-FFASEHYGV-----DPD--IV--TFGKGLG-GGLPISAVLG-SEEIMEAFQPGSHGSTF 276 (339)
T ss_dssp TT-EEEEEETTTTTTTTS-S-SSGHHHHTS-----SSS--EE--EEEGGGG-TTSSEEEEEE-EHHHHTTSCTTSSTCTT
T ss_pred cccceecccccccccccC-C-ccceecccc-----cCc--cc--ccccchh-hhhhcccccc-cchhhcccccccccccc
Confidence 999999999998853333 3 333333211 233 33 5579998 8899999999 455555432211 112
Q ss_pred CCChHHHHHHHHhcC
Q 011570 309 LVSSQTQHLIATMLS 323 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~ 323 (483)
..++++..++.+.|+
T Consensus 277 ~g~p~~~aaa~~~l~ 291 (339)
T PF00202_consen 277 GGNPLSCAAALATLE 291 (339)
T ss_dssp TT-HHHHHHHHHHHH
T ss_pred ccchHhhhhhhhHHH
Confidence 345666666555543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-07 Score=88.96 Aligned_cols=317 Identities=16% Similarity=0.223 Sum_probs=181.4
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhH---HHHHHHHHhcCCC----CeEEEeCCCCc
Q 011570 85 KGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG---AHETVAFCLADPG----DAFLVPTPYYP 154 (483)
Q Consensus 85 ~~~~~Y~~~---~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~---al~~~~~~l~~~g----d~Vlv~~P~y~ 154 (483)
..++.|.+. +|+.++-..+.+|+.+..| .+.=.+-..+|++. ++.++=...-..| +.||+|+-.|+
T Consensus 93 ~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG----~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHG 168 (496)
T COG1003 93 ANIHPFQPEEQVQGYLELIYELQEWLKEITG----MDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHG 168 (496)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHHHhcC----CceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccC
Confidence 345555443 4788899999999998766 33334444566553 3333322233344 58999999998
Q ss_pred ChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 155 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
.--.++... |.+|+.|+.+++| .+|+++|++++.+ ++.++.++|||. .|.. ++.+.+|+++.+++|..
T Consensus 169 TNPASAam~-G~~VV~V~~~~~G--~VDlddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~ 236 (496)
T COG1003 169 TNPASAAMA-GFKVVVVKCDENG--NVDLDDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQ 236 (496)
T ss_pred CChhhHhhc-CceEEEEecCCCC--CccHHHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCE
Confidence 887777765 9999999998765 7999999999874 889999999986 4543 56799999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC----CCceEEEEEecChHHHHHHHH-------
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF----PGFRVGIIYSYNDQVVSCARK------- 303 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~----~GlRiG~li~~~~~l~~~~~~------- 303 (483)
+..|.+=..-..+- .. +. +..-.|+=--++|+|+. .|-..|=|.. .+.+...+..
T Consensus 237 vY~DGANlNA~vG~-~r-PG-----------d~G~DV~HlNLHKTF~iPHGGGGPG~GPvgV-k~~L~pfLP~p~~~~~~ 302 (496)
T COG1003 237 VYYDGANLNAIVGL-AR-PG-----------DMGFDVVHLNLHKTFCIPHGGGGPGAGPVGV-KAHLAPFLPGPVVYHDV 302 (496)
T ss_pred EEecCcchhhhhcc-cc-cc-----------ccccceEEeecccccccCCCCCCCCCCceeh-HhhccccCCCCcccCCC
Confidence 99999864322222 11 11 11111222256677632 2333454333 1222211110
Q ss_pred ---------------hhhc-CCCChH-HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC--Cce
Q 011570 304 ---------------MSSF-GLVSSQ-TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS--NAG 363 (483)
Q Consensus 304 ---------------~~~~-~~~s~~-~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~--~~g 363 (483)
...+ ++.+.+ ...+-..++..++ +++.-+.-.-+.+++.+.|+.. .+.+.+. -..
T Consensus 303 ~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~G-----L~~ase~AvLNANYia~rL~~~y~~~y~~~~~~~H 377 (496)
T COG1003 303 GEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMGADG-----LKQASEVAVLNANYIARRLKGYYPVPYTGENRVAH 377 (496)
T ss_pred ccccccCCCCccceeeccccCcchHHHHHHHHHHHHhHHH-----HHHHHHHHHHhHHHHHHHhhhcCccccCCCCccee
Confidence 0111 111100 0011111222221 2333333344567888888763 2322222 111
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
=|+ ++......... ....+++++|+. +|+. .|--.|...-.+.+-|=... .+.+++|+++++|.++.++.++.
T Consensus 378 E~i-ld~r~l~~~~G-v~~~DvAKrLlD-~GfH-aPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~ 451 (496)
T COG1003 378 ECI-LDARPLKKETG-VRALDVAKRLLD-YGFH-APTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAV 451 (496)
T ss_pred EEE-eechHhHhhcC-CcHHHHHHHHHh-cCCC-CCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 122 33332222111 235689999995 6886 34334542234556665543 37789999999998877776644
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-07 Score=87.15 Aligned_cols=294 Identities=15% Similarity=0.168 Sum_probs=170.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------C--C-CCe-EEEeCCCCcC-hHHHHhhh-
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------D--P-GDA-FLVPTPYYPG-FDRDLRWR- 163 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~--~-gd~-Vlv~~P~y~~-~~~~~~~~- 163 (483)
+.++-.+.++++...+| -+.|+.+|.+.|+...++.... + | ... |+....+|.+ ...++...
T Consensus 99 Ynd~~~~f~~~vt~lf~------~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~ 172 (427)
T KOG1402|consen 99 YNDVLGEFAEYVTKLFG------YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLST 172 (427)
T ss_pred hhhhHHHHHHHHHHhcC------cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecC
Confidence 35566667777776654 4678888888999888876542 1 3 223 3333344432 11111100
Q ss_pred -------cC----cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCH-HHHHHHHHHHhhc
Q 011570 164 -------TG----VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDR-ETLKDIVSFINEK 231 (483)
Q Consensus 164 -------~G----~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~-~~l~~i~~~a~~~ 231 (483)
+| ..+..+|. -|.++|+.++.+ +++.++++...+--.|.++|. ..+.+..++|.+|
T Consensus 173 d~ds~~~fgp~~P~~~~~v~Y-------~d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky 240 (427)
T KOG1402|consen 173 DPDSWDGFGPFLPGVVDKVPY-------GDAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY 240 (427)
T ss_pred CcchhhccCCCCCCcceeecc-------CCHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhh
Confidence 01 00111221 178999998875 467666555448888887754 4699999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--hhcC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM--SSFG 308 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~--~~~~ 308 (483)
|+++|.||+..++..++ ++... ++.. . .+|.|+ |.|+++ .| +.+..+++ ++++.-.++.. .+.+
T Consensus 241 nvl~I~DEvQTGl~RTG--k~la~-d~en-v---~PDivi----lgKalS-GG~~Pvsavl~-~~~im~~~~pgeHgsTy 307 (427)
T KOG1402|consen 241 NVLLIADEVQTGLARTG--KLLAC-DYEN-V---RPDIVI----LGKALS-GGVYPVSAVLA-DDDIMLNIKPGEHGSTY 307 (427)
T ss_pred cEEEEehhhhhcccccC--cEEEe-ehhh-c---CCCeEE----Eecccc-CCeeeeEEEEe-cHHHHhccCCCcccccc
Confidence 99999999998865443 22221 1111 0 233333 368887 55 67888888 45444433321 1123
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--c----eeecCCceEEEeeecCchhhccChHHH
Q 011570 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG--I----GCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g--i----~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
..+++..+++.++|.- +.+ +...++....-..|...|.++. + .... .-|++..+.+.... ....++
T Consensus 308 ggNpLg~~vaiAalev---i~e--ekL~era~~lG~~l~~~L~~l~~~~p~~v~~VR-GrGl~~ai~i~~~~--~~~~~a 379 (427)
T KOG1402|consen 308 GGNPLGCAVAIAALEV---IVE--EKLVERAAKLGEILRDQLNKLQKKFPHVVKEVR-GRGLLNAIVINPSK--TSGQDA 379 (427)
T ss_pred CCChHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHhccccccchhheee-ccceEEEEEecccc--ccchhH
Confidence 3677777766666532 111 2223333444456666776652 2 2233 33577777664311 111345
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
.+++-.+- +.|++--|-. .+-||++... +++++++++++.|.+.+.
T Consensus 380 w~~cl~lk-~~g~LAkptH------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 380 WDVCLALK-ENGLLAKPTH------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred HHHHHccc-ccccccCCCC------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 56666654 5587755432 3479999876 599999999999988763
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-06 Score=85.77 Aligned_cols=330 Identities=11% Similarity=0.108 Sum_probs=177.1
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE-EEeC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI-VMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i-~it~ 126 (483)
.++|+.+.-.+|.+.++++..+... +...++.-+ +..+.+ .-..++-+.+.+.+.+.++ ++ +..+| +++.
T Consensus 5 ~~nF~aGPa~lp~~Vl~~~~~~~~~---~~~~g~si~-eisHRs--~~F~~i~~~~~~~Lr~Ll~--~P-~~y~Vlfl~G 75 (364)
T PRK12462 5 QLNFSGGPGALPDTVLEQVRQAVVE---LPETGLSVL-GMSHRS--SWFSSLLAQAEADLRDLLG--IP-DEYGVVFLQG 75 (364)
T ss_pred cceecCCCcCCCHHHHHHHHHHHhc---ccccCcccc-cccccc--HHHHHHHHHHHHHHHHHhC--CC-CCCeEEEEec
Confidence 3577777666666666555433211 001111111 122222 2245555556666666655 22 12245 5556
Q ss_pred ChhHHHHHHHHHhcCCCCeEE-EeCCC-CcC-hHHHHhhhcCcEEEEeecCCCCCc--ccCHHHHHHHHHHHHhcCCcee
Q 011570 127 GATGAHETVAFCLADPGDAFL-VPTPY-YPG-FDRDLRWRTGVQLVPVVCDSSNDF--KVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vl-v~~P~-y~~-~~~~~~~~~G~~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|++.++..+...|+.+||+++ +..-+ |+. +...++.. | ++..+......+| -++++.++. +++.+
T Consensus 76 ggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~-g-~v~~~~~~~~~~~~~~p~~~~~~~--------~~d~~ 145 (364)
T PRK12462 76 GSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRV-A-AMRVVWDGAASGYRTLPSLAELDW--------DARAP 145 (364)
T ss_pred cHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhc-C-CceEecCcCCCCCCcCCCHHHhcc--------CCCCc
Confidence 699999999999999999655 44444 432 22333443 5 4433332111122 344555421 23567
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
.|.+|+-...||..++ ++.+.++.++|+|-+-. +.. .+ ..+.. + .++..|.-|.+|
T Consensus 146 ~v~~t~NETstGv~~~--------~~~~~~~~llvvD~sS~---~~s-~p-id~~~---------~--dvi~agsQKnlg 201 (364)
T PRK12462 146 FRHYVSNETVEGLQFP--------DAAGLPDSPLIADMSSD---FMS-RP-FDVEA---------Y--GMVYAHAQKNLG 201 (364)
T ss_pred EEEEccCCCCceEecC--------cccccCCCeEEEEcCch---hhC-CC-CChHH---------c--cEEEeeccccCC
Confidence 7888877778999986 22223688999999975 333 22 23222 2 355678899999
Q ss_pred CCCceEEEEEecChHHHHHHH-------------HhhhcCCCChHHHHHHHHhcCChhHH-HH--HHHHHHHHHHHHHHH
Q 011570 282 FPGFRVGIIYSYNDQVVSCAR-------------KMSSFGLVSSQTQHLIATMLSDDQFV-EK--FIAESAKRIAERHKA 345 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~-------------~~~~~~~~s~~~q~~~~~~l~~~~~~-~~--~~~~~~~~l~~~~~~ 345 (483)
.|| ++.++.+++.+..... ....+++++....+++...++ |+ ++ -++...++.++..+.
T Consensus 202 P~G--ltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~---~i~~e~GGl~~~~~r~~~ka~~ 276 (364)
T PRK12462 202 PAG--VTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR---WIRDEIGGVHAMRDINARKAAM 276 (364)
T ss_pred CCc--eEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH---HHHHhccCHHHHHHHHHHHHHH
Confidence 887 5777775444322111 011123333344444433322 11 11 245555666777788
Q ss_pred HHHhhhcCC-ceee----cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CC
Q 011570 346 FTWGLSQVG-IGCL----KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MD 419 (483)
Q Consensus 346 l~~~L~~~g-i~~~----~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~ 419 (483)
+.+.+.+.. +-.. ...+-+-+.+++++. ..+.+|.+. ++++|+.-..|.. .-|.+|+|+=. ++
T Consensus 277 ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~------~l~~~f~~~-a~~~gl~~lkGhr----~vgg~Ras~yna~~ 345 (364)
T PRK12462 277 LYATLDALNEVIDCHAHRAARSTMNVAFRFRQP------RLDTLFKEQ-STEAGFCGLSGHR----SIGGIRASLYNAVS 345 (364)
T ss_pred HHHHHHhCCCcccCCCChhhcCcceEEEEcCCH------HHHHHHHHH-HHHCCCccccCCc----ccCceEEEcCCCCC
Confidence 888887763 3221 123345666666542 113344444 4467988766643 23459999943 58
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011570 420 DRTMEIALSRITSFMLK 436 (483)
Q Consensus 420 ~e~l~~~l~~L~~~l~~ 436 (483)
.|.++.+++-++++-++
T Consensus 346 ~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 346 EQAVSRLCAFLKDFAIR 362 (364)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777766665543
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-07 Score=83.72 Aligned_cols=294 Identities=11% Similarity=0.160 Sum_probs=171.3
Q ss_pred CCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhh------cCc-----EEEEe-ecCC--CCCcc-
Q 011570 119 PDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWR------TGV-----QLVPV-VCDS--SNDFK- 180 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~------~G~-----~~~~v-~~~~--~~~~~- 180 (483)
-+-++++|+++++..++++.. .+.-| ||+.+..|.+.....-.. .|. +.+.+ |.++ .+.|.
T Consensus 102 Lsvc~F~NSGSEANDLALRLAR~ftkhqD-vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~ 180 (452)
T KOG1403|consen 102 LSVCFFVNSGSEANDLALRLARNFTKHQD-VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRD 180 (452)
T ss_pred ceEEEEecCCchhhHHHHHHHHhhcccCc-eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCcccccccccc
Confidence 456888999999999998764 33444 566666765543321110 111 11111 1111 11111
Q ss_pred ----------cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHH-HHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 181 ----------VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRE-TLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 181 ----------~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~-~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.-.+.+++.+.+..+.+.++.+.+-.+-+.=.|+++|+. ..+++++..+.+|.+.|.||+.-++..-+
T Consensus 181 ~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG- 259 (452)
T KOG1403|consen 181 KMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVG- 259 (452)
T ss_pred ccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccc-
Confidence 124567777777777776666555445566677777654 58999999999999999999998754334
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-----hhhcCCCChHHHHHHHHhc--
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-----MSSFGLVSSQTQHLIATML-- 322 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-----~~~~~~~s~~~q~~~~~~l-- 322 (483)
..++++.-+ +.-..|+ ++.|.+| .|..++.+++ .+++.+.+.. +..++ .++.+-++..+.+
T Consensus 260 ~hyWafq~y-------~fiPDIV--tmgKpmG-NGhPVa~Vat-tkeIA~Af~atgv~YFNTyG-GnPVsCAv~laVm~v 327 (452)
T KOG1403|consen 260 SHYWAFQTY-------NFIPDIV--TMGKPMG-NGHPVAAVAT-TKEIAQAFHATGVEYFNTYG-GNPVSCAVGLAVMRV 327 (452)
T ss_pred hhhhhhhhh-------ccccchh--eecccCC-CCCeeeEEec-cHHHHHHhccccceehhccC-CCchhHHHHHHHHHH
Confidence 445554333 1112233 7889999 9999999998 5777777654 22333 5666655544443
Q ss_pred -CChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceee--cCCceEEEeeecCchhhcc--ChHHHHHHHHHHHHhcCe
Q 011570 323 -SDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCL--KSNAGLFLWMDLHHLLKEQ--TYEAEMALWRVIINEVKL 395 (483)
Q Consensus 323 -~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~--~~~~g~f~~~~l~~~~~~~--~~~~~~~~~~~Ll~~~gV 395 (483)
+++. ++++.++.-.. +...|++. ..++. ...-|+|+-+++-+.-... .-+...-+..+|.+.++|
T Consensus 328 ~e~E~-Lq~ha~~vG~~-------L~~lL~~~k~kh~~IGDvRGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~V 399 (452)
T KOG1403|consen 328 CEDEN-LQEHAQQVGEK-------LEVLLRRLKQKHECIGDVRGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRV 399 (452)
T ss_pred Hhhhh-HHHHHHHHHHH-------HHHHHHHHhhhccceeccccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhE
Confidence 3332 23333333222 22233222 11222 3355789999885432221 112333456677778889
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++..- ++..+-+.|-..- .+++..++.+..|.+++.-..
T Consensus 400 LlsaD----GPh~NilKiKPPmCFneena~e~v~~ld~iLT~me 439 (452)
T KOG1403|consen 400 LLSAD----GPHRNILKIKPPMCFNEENADEFVLGLDEILTVME 439 (452)
T ss_pred EEecC----CCCCceeecCCCcccChhhHHHHHHHHHHHHHHHH
Confidence 88632 1234456555422 488889999999988887543
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-06 Score=81.57 Aligned_cols=271 Identities=15% Similarity=0.120 Sum_probs=164.9
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCC-CcC----hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPY-YPG----FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~-y~~----~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 189 (483)
..+.+++++++++-.++.++.+.++ +|+.||+++-. |+. ....+..+ |.. .+- ...+.+++++++
T Consensus 91 A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~-~~~-----~~~--~~~~~P~~~~~~ 162 (407)
T COG3844 91 ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLL-GIG-----YDL--EGVIAPRALEEA 162 (407)
T ss_pred CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhh-ccc-----ccc--eeeeChHHHHHh
Confidence 5789999999999999999888754 48888888643 322 22233332 322 111 113467788888
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe
Q 011570 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269 (483)
Q Consensus 190 i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 269 (483)
+.+ ++.+|++++.|.-||+.++ +.+|-.+++++|++++-|=+|+...+. .. +. ..+.
T Consensus 163 ~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGavp-----~~---Lh------~~ga 219 (407)
T COG3844 163 ITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAVP-----VD---LH------AAGA 219 (407)
T ss_pred hcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCcc-----ee---ec------ccCC
Confidence 875 7888899999999999999 889999999999999999999743222 11 11 2244
Q ss_pred EEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc------------------------CCCChHHHHHHHHhcCC
Q 011570 270 IHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF------------------------GLVSSQTQHLIATMLSD 324 (483)
Q Consensus 270 vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~------------------------~~~s~~~q~~~~~~l~~ 324 (483)
.+-+++.-|.++ -||-.. ++.+.++.........+.+ ++.+..+..++...|.-
T Consensus 220 DfaigcsyKYLNgGPGapa-~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDi 298 (407)
T COG3844 220 DFAIGCSYKYLNGGPGAPA-GLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDI 298 (407)
T ss_pred CeeeeeeceeccCCCCCce-eEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhh
Confidence 566788888864 255443 4444222111111111111 11111222222222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCc----eEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNA----GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~----g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
.. +--+.+.++.--...+++++.++.. ++++..|.. |-.+-+..|. ..++++.|. ++||.
T Consensus 299 fa--~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~---------~~~V~qaLi-~rGVi 366 (407)
T COG3844 299 FA--DVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH---------GYQVMQALI-DRGVI 366 (407)
T ss_pred hh--hcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc---------HHHHHHHHH-HcCcc
Confidence 11 1124556666666678888777654 455444322 2244444442 236677777 45986
Q ss_pred eeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHh
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~ 437 (483)
.- | ..++.+|+.++- .+..++-.+++.|.+++++.
T Consensus 367 gD----~--R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 367 GD----F--REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred cc----c--cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 32 2 246789999964 48899999999999999876
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-06 Score=89.62 Aligned_cols=273 Identities=15% Similarity=0.158 Sum_probs=157.5
Q ss_pred HHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---CCCCeEEEeCCCCcChHHHHh---hhcCcEEEEeecCC
Q 011570 102 AVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVPTPYYPGFDRDLR---WRTGVQLVPVVCDS 175 (483)
Q Consensus 102 ~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~P~y~~~~~~~~---~~~G~~~~~v~~~~ 175 (483)
.+...+.++.| .+..|.-+-.+++.+-..++.+.. +++++|++++-.|+.+...++ ...|.+++.++
T Consensus 113 e~Qt~i~eLtG----m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~--- 185 (939)
T TIGR00461 113 NFQTVVSDLTG----LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD--- 185 (939)
T ss_pred HHHHHHHHHHC----CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc---
Confidence 33444445555 567788888888887776666632 234899999999998876655 22488888764
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
+++|++.+ ++.++++.+||. +|.+.+ +++|++.++++|.+++++---..+ .. ..+.
T Consensus 186 -------~~~l~~~~--------~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~gal~~~~ad~~al--~l---l~~P 241 (939)
T TIGR00461 186 -------CSDIKKAV--------DVFGCLLQYPAT-DGSILD---YKQLIDALHSHKSLVSVAADLMAL--TL---LTPP 241 (939)
T ss_pred -------HHHHhhcC--------CEEEEEEECCCC-CeEEec---HHHHHHHHHHcCCEEEEEechHHh--CC---cCCH
Confidence 33454432 456888889986 798864 889999999999999984322211 11 1111
Q ss_pred HHhhhhccccCCCeEEEEecCccccCC----CCceEEEEEecChHHHHHHHH-------------------------hhh
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGF----PGFRVGIIYSYNDQVVSCARK-------------------------MSS 306 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~----~GlRiG~li~~~~~l~~~~~~-------------------------~~~ 306 (483)
.+ .+-.|++++ +|.||+ .|--.|++.+. +.+.+.+.- ++.
T Consensus 242 ge---------~GaDi~vg~-~q~fg~p~g~GGP~aG~~a~~-~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrR 310 (939)
T TIGR00461 242 GH---------YGADIVLGS-SQRFGVPMGYGGPHAAFFAVK-DEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRR 310 (939)
T ss_pred HH---------cCCcEEeeC-CCccCCCCCCCCCceeeeeec-HhhHhhCCCCceeEEecCCCCccceeecccccccccc
Confidence 11 233344443 444443 34447777773 333322110 000
Q ss_pred cCCCCh--HHHHHHH---HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHH
Q 011570 307 FGLVSS--QTQHLIA---TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 307 ~~~~s~--~~q~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~ 381 (483)
--..|. ..|...+ .++.. -+-.+-+++..++...+..++.+.|.+.|+++..+ .+|=.+.+.-. .. .
T Consensus 311 ekAtSNICt~qaL~a~~a~~Y~~-~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~~~~--~fF~~~~v~~~--~~---~ 382 (939)
T TIGR00461 311 DKATSNICTAQVLLANVASSYCV-YHGPKGLKNIARRIHSLTSILANGLENDPHELINK--TWFDTLTVKVG--NG---I 382 (939)
T ss_pred cccCcchhHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CccceEEEEeC--CC---C
Confidence 000111 1122111 11100 00022255666667778888999999999887654 34433333210 00 1
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHH
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~ 431 (483)
..++.+++++ .||.++.. .++.+++|+.. .++++++.+++.+.
T Consensus 383 ~~~i~~~~~~-~gi~l~~~------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 383 SSELLKAAEE-FNINLRAV------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHH-CCCeeeec------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 2356666664 59987752 23579999976 58999999999885
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-05 Score=78.31 Aligned_cols=299 Identities=14% Similarity=0.124 Sum_probs=154.2
Q ss_pred CCcEEEeCChh-HHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHH
Q 011570 119 PDRIVMSGGAT-GAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 119 ~~~i~it~G~~-~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~ 194 (483)
....++++.+| ..+.+++.++. ..++.|+.+.-.+..-..++... |.+++.++...+ +....|++.+++.+++.
T Consensus 74 ~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A-Gl~~~vV~~~~~~d~l~td~~~ie~~i~~~- 151 (389)
T PF05889_consen 74 VKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA-GLEPVVVENVLEGDELITDLEAIEAKIEEL- 151 (389)
T ss_dssp HCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT-T-EEEEE-EEEETTEEEEHHHHHHHHHHHH-
T ss_pred ccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc-CCeEEEeeccCCCCeeeccHHHHHHHHHHh-
Confidence 35567777766 44455555553 45788888876655445556665 999998885322 23455788888888653
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
+....+.++++++---|... +++.+|+++|+++|+..|+..||+- .. . .-...+..... ...-.+++.
T Consensus 152 --G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv---Q~-~--~~~~~i~~a~~--~GRvda~vq 219 (389)
T PF05889_consen 152 --GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV---QS-S--KCMHLIQQAWR--VGRVDAFVQ 219 (389)
T ss_dssp --CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT---T--H--HHHHHHHHHHH--HSTCSEEEE
T ss_pred --CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh---hH-H--HHHHHHHHHHh--cCCcceeee
Confidence 44566778887754444432 3699999999999999999999972 22 1 11111111100 012235788
Q ss_pred cCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATML--SDDQFVEKFIAESAKRIAERHKAFTWGLSQ 352 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l--~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 352 (483)
|.-|.| +-+..-+.+.++++.....+...-+--...++..-....++ ....| ...+.++.+.+....+.+.+.-++
T Consensus 220 S~dkNF-~VPvGgai~As~~~~~i~~vs~~YpGRas~sp~ld~~itLl~LG~~g~-~~ll~~r~~~f~~l~erl~~~aee 297 (389)
T PF05889_consen 220 STDKNF-MVPVGGAIMASFDPSGILAVSKEYPGRASASPSLDLFITLLSLGCTGY-GALLKERKASFPYLKERLKKWAEE 297 (389)
T ss_dssp EHHHHH-CEESSHEEEEESSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCE-EecCCCcEEEecCHHHHHHHHHHhhhhhhcccchHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 55544456667666555554433222112223333333333 22232 333333333333333333333333
Q ss_pred CCceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE----eeCCCCCCC---C--CCCEEEEEecc-CCHH
Q 011570 353 VGIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN----VSPGSSFHC---P--NPGWFRVCFAN-MDDR 421 (483)
Q Consensus 353 ~gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~----v~pg~~f~~---~--~~~~iRis~~~-~~~e 421 (483)
.|-.+. .|.....+.+.++....... .+...|...|. ..||. |.|+..+.- + ...|+=++-+. +++|
T Consensus 298 ~~e~ll~~p~N~is~a~tl~~l~~~~~-k~~~~lgs~Lf-~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG~~~e 375 (389)
T PF05889_consen 298 VGERLLETPRNHISMAFTLDTLYEISQ-KDGTFLGSMLF-KRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIGMTRE 375 (389)
T ss_dssp TTEEBSSSTT-SSEEEEE-TTCCTCCS-SHHHHHHHHHH-HTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT--HH
T ss_pred hhhhhcCCCCCCeeEEEECccchhhcc-chhhhHHHHHH-hCCcccceeeccCCCcccccCCCCchHHHHHHHHhCCCHH
Confidence 443332 24444555666664322111 12234455555 45663 333322211 0 12577774433 7999
Q ss_pred HHHHHHHHHHHHHH
Q 011570 422 TMEIALSRITSFML 435 (483)
Q Consensus 422 ~l~~~l~~L~~~l~ 435 (483)
+++.++++|++.++
T Consensus 376 evd~~v~rL~k~i~ 389 (389)
T PF05889_consen 376 EVDYFVKRLDKIIK 389 (389)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-05 Score=75.73 Aligned_cols=316 Identities=14% Similarity=0.148 Sum_probs=174.6
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CC-----C-----CeEE-EeCCCCcChHHHHh
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DP-----G-----DAFL-VPTPYYPGFDRDLR 161 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~-----g-----d~Vl-v~~P~y~~~~~~~~ 161 (483)
+..-..+.+-..+....|+. ...|.|+--.|+...++.+.-+-- -| | +-|+ +.+-+|.++..++.
T Consensus 138 vF~lmE~~vl~km~~ivGw~--~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa 215 (510)
T KOG0629|consen 138 VFVLMEEEVLAKMREIVGWE--EGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAA 215 (510)
T ss_pred eEEeehHHHHHHHHHHhCCC--CCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHH
Confidence 33334444555555555532 235677777777777777654421 11 2 3343 44567777888777
Q ss_pred hhcC---cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEE
Q 011570 162 WRTG---VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVC 237 (483)
Q Consensus 162 ~~~G---~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~ 237 (483)
.+ | -.++.|+.++.| ++++++||+.|.++.++|..+ .++-++. ..-.|..=+ +..|+++|++|++|+.+
T Consensus 216 ~l-g~gtd~c~~v~t~e~G--km~~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd---L~~iadiC~k~~lWmHv 288 (510)
T KOG0629|consen 216 FL-GLGTDHCIKVKTDERG--KMIPDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD---LNGIADICEKHKLWMHV 288 (510)
T ss_pred Hh-ccCCceeEEecccccC--ccchHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc---HHHHHHHHHhcCEEEEe
Confidence 76 7 678888888755 899999999999877665433 3333333 455677656 89999999999999999
Q ss_pred ccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-h-------cCC
Q 011570 238 DEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-S-------FGL 309 (483)
Q Consensus 238 Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~-------~~~ 309 (483)
|.+|++...-. ..+.......+ ..+ -+.++.+|.+| +.+.++..+...+-+....+.+. . ++.
T Consensus 289 DAAwGGglLmS-~k~R~kl~Gie------ra~-SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Yd 359 (510)
T KOG0629|consen 289 DAAWGGGLLMS-RKHRHKLTGIE------RAN-SVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYD 359 (510)
T ss_pred ecccccccccC-hhhHhhccCcc------ccC-ceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCceee
Confidence 99998743333 22212111111 122 34678899998 77888776664443333221111 0 010
Q ss_pred CChHHHHHHHHhcCChh-------HH------HHHHHHHHHHHHHHHHHHHHhhhcCC-ce-ee--cCCceEEEeeecCc
Q 011570 310 VSSQTQHLIATMLSDDQ-------FV------EKFIAESAKRIAERHKAFTWGLSQVG-IG-CL--KSNAGLFLWMDLHH 372 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~-------~~------~~~~~~~~~~l~~~~~~l~~~L~~~g-i~-~~--~~~~g~f~~~~l~~ 372 (483)
+|- -.....++.+. |+ .+-.++..+.+-+..+++.+.+++.+ .. +. .|+..++.+.-+|.
T Consensus 360 vS~---DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~ 436 (510)
T KOG0629|consen 360 VSY---DTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPP 436 (510)
T ss_pred ccc---ccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCch
Confidence 110 00011111110 00 01124455666778899999999883 22 22 24533344434444
Q ss_pred hhhccCh--HH-------HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccC--CHHHHHHHHHHHHHH
Q 011570 373 LLKEQTY--EA-------EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM--DDRTMEIALSRITSF 433 (483)
Q Consensus 373 ~~~~~~~--~~-------~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~--~~e~l~~~l~~L~~~ 433 (483)
.+..... +. .-.+-..++++ |-....-+.. ...++++|+.++.. +.++++-+++-|..+
T Consensus 437 ~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~-Gt~Mi~YqPl-~~~~nffr~v~sn~a~~~ad~dflldEIerl 506 (510)
T KOG0629|consen 437 SLRGWQENPERDSRLVKVAPKIKERMMKK-GTTMIGYQPL-GDKPNFFRMVISNPALTEADLDFLLDEIERL 506 (510)
T ss_pred HhccCcccchhhhHHHhhCcHHHHHHHhc-cceeeEeccc-ccccchhheecccchhhhhhHHHHHHHHHHh
Confidence 3322111 00 11233445544 5443321111 12457999999763 778888888777654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-05 Score=80.00 Aligned_cols=279 Identities=19% Similarity=0.217 Sum_probs=138.9
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhh---cCcEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWR---TGVQL 168 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~ 168 (483)
|.-+.--.+..++.+..| .+..|.-+-.|++.+-..++.+ --++.++|+++.-.|+.+...++-. .|.++
T Consensus 107 G~Lq~lfe~Qs~i~eLTG----mdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~i 182 (429)
T PF02347_consen 107 GRLQALFEYQSMICELTG----MDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEI 182 (429)
T ss_dssp HHHHHHHHHHHHHHHHHT----SSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEE
T ss_pred HHHHHHHHHHHHHHHhhC----CCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEE
Confidence 434444445555555555 3444555666666555544433 3344469999999999888765542 48999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.++.++.+ ..| +.++.+|++.+||. .|.+-+ +++|.++++++|.++++ .+-- +....
T Consensus 183 v~~~~~~~~--~~d--------------~~~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~-~aL~~ 240 (429)
T PF02347_consen 183 VEVPLDEDG--TTD--------------DDDTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADP-NALGG 240 (429)
T ss_dssp EEE-BBTTC--SB---------------STTEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGC-CGCCT
T ss_pred EEecccccC--Ccc--------------ccCeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCH-HHHhC
Confidence 999987644 223 13889999999997 788866 88999999999988876 4321 11221
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCC----CCceEEEEEecChHHHHHHH----------------------
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF----PGFRVGIIYSYNDQVVSCAR---------------------- 302 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~----~GlRiG~li~~~~~l~~~~~---------------------- 302 (483)
..+..+ .+-.|++++ +|.||. .|--.|++.+..+ +.+.+.
T Consensus 241 ---l~~Pge---------~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~-l~r~lPGRiVG~t~D~~G~~~~~ltLqt 306 (429)
T PF02347_consen 241 ---LKSPGE---------YGADIVVGE-HQTFGIPMGFGGPGAGFFAVRED-LVRQLPGRIVGQTKDADGKRAFVLTLQT 306 (429)
T ss_dssp ---C--GGG---------GT-SEEEEC-CTTTT---CCC-S--EEEEE-GG-GGGGS-S-EEEEEEBCCCSCCEEEE-GG
T ss_pred ---cCChhh---------cCccEEeeC-CCCCcccCCCCCCCeeeEEEhhh-hhhhCCCceecccccccccceeeecccc
Confidence 111111 233455655 676643 4555778877433 322211
Q ss_pred ------H--hhhcCCCChHHHHHHH--HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecC
Q 011570 303 ------K--MSSFGLVSSQTQHLIA--TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 303 ------~--~~~~~~~s~~~q~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~ 371 (483)
+ ..+.. ++..+..++. ..+...+ .+-+++..++...+..++.+.|.+. ++.+..+.---|+....+
T Consensus 307 REQHIrReKAtSNI-ctnqaL~A~~a~~Yl~~~G--~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~ 383 (429)
T PF02347_consen 307 REQHIRREKATSNI-CTNQALLALAAAIYLAYLG--PEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSK 383 (429)
T ss_dssp GTCHHHGCCSTT----SS-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS
T ss_pred ccccccccchhhhh-hhhHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCC
Confidence 0 11111 2222222211 1121111 3346777778888999999999986 444433322223333322
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
. ....++.++.+. .|+... ....+.+-+|+.- .++++++.+++.|
T Consensus 384 ~-------~~~~~l~~~~~~-~gl~~~------~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 384 D-------KEVEELLKRGIE-GGLNLR------YPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp --------HHHHHHHHTT-----EEEG------GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred c-------HHHHHHHHHHHh-cCCCcc------ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 1 111123443332 253332 1234578888876 4889999988764
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-05 Score=72.79 Aligned_cols=285 Identities=15% Similarity=0.127 Sum_probs=162.3
Q ss_pred cCCC----cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC-----hHHHHhhhcCc----EEEEeecCCCCCcccCH
Q 011570 117 FDPD----RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG-----FDRDLRWRTGV----QLVPVVCDSSNDFKVTM 183 (483)
Q Consensus 117 ~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~-----~~~~~~~~~G~----~~~~v~~~~~~~~~~d~ 183 (483)
++|+ ||-.-+| +.|.+.+-++++.|+|+|+-.+--.++ |...-+..... +-.|+.+++. ..-+|.
T Consensus 101 ldp~kWGVNVQp~SG-SPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~-TG~IDY 178 (477)
T KOG2467|consen 101 LDPEKWGVNVQPYSG-SPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPS-TGYIDY 178 (477)
T ss_pred CCHHHCceeeccCCC-CchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCC-CCceeh
Confidence 5555 4555555 557788889999999999855432221 11111111011 1123334433 446899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHH-HHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhc
Q 011570 184 EALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRE-TLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262 (483)
Q Consensus 184 ~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~-~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~ 262 (483)
+.||+....+ ++|+|+-. +..+++. +-.++.++|.+.|.+++.|-+|....... ...++..++
T Consensus 179 D~Le~~A~~f-----rPk~iiaG------~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA-~vipsPFey---- 242 (477)
T KOG2467|consen 179 DKLEKTATLF-----RPKLIIAG------TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAA-GVIPSPFEY---- 242 (477)
T ss_pred HHHHHHHHhc-----CCcEEEec------cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhc-ccCCCcccc----
Confidence 9999987775 77865532 2223322 35555666668899999999995433332 222232222
Q ss_pred cccCCCeEEEEecCccccCCCCceEEEEEecC----------hH----HHHHHHHhhhc---CCCChHHHHHHHHhcCCh
Q 011570 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN----------DQ----VVSCARKMSSF---GLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 263 ~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~----------~~----l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~ 325 (483)
..||..|.+|++ .|-|-|.+.-.. ++ +.+.++..-.+ +.+..-...+++.+|..-
T Consensus 243 ------~DiVTTTTHKsL--RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa 314 (477)
T KOG2467|consen 243 ------CDIVTTTTHKSL--RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQA 314 (477)
T ss_pred ------cceeeccccccc--cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhh
Confidence 347788999976 899999887632 01 22222211111 223333444555455431
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc-eEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA-GLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~-g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
.. .+ ..+..+++.++...|.+.|.+.|.+...... +-.+.+++.. ++++ .-++.+++..+|.+.--..+
T Consensus 315 ~t-pe-fk~Yq~qV~~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dG-------arvE~vle~~~I~~NKNtvp 385 (477)
T KOG2467|consen 315 MT-PE-FKEYQKQVLKNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDG-------ARVEKVLELCHIALNKNTVP 385 (477)
T ss_pred CC-HH-HHHHHHHHHHHHHHHHHHHHHcCceEecCCccceEEEEeccccCCch-------HHHHHHHHHhhhhhcCCcCC
Confidence 10 11 2445566778888999999999988764332 3466678854 3333 34556666667766544444
Q ss_pred CCC---CCCEEEEEecc-----CCHHHHHHHHHHHHHHHHH
Q 011570 404 HCP---NPGWFRVCFAN-----MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 404 ~~~---~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~ 436 (483)
+.. .++.+||+-.. ..++++++..+-|.++++-
T Consensus 386 GD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~i 426 (477)
T KOG2467|consen 386 GDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVKI 426 (477)
T ss_pred CCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHHH
Confidence 432 36779998743 2567888877777766543
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5e-05 Score=75.00 Aligned_cols=319 Identities=13% Similarity=0.145 Sum_probs=175.7
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCC-----Cc-CCCcEEEeCChhHHHHHHHHHh-------cCCC-----------C-eEE
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRI-----TF-DPDRIVMSGGATGAHETVAFCL-------ADPG-----------D-AFL 147 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~-----~~-~~~~i~it~G~~~al~~~~~~l-------~~~g-----------d-~Vl 147 (483)
.+..++|.-.+-+|+++..+.+- .. +.--|+-++. +++..+++.+. .+.+ + .+.
T Consensus 108 sPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~ta-ses~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 108 SPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTA-SESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred CcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCc-chhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 34468999999999998876221 11 1223444443 44444443332 1112 1 455
Q ss_pred EeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHH
Q 011570 148 VPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSF 227 (483)
Q Consensus 148 v~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~ 227 (483)
+.+-++++....+.. +|+++..++.++ +|.++.+.|+++|.+..+.|- +..+++.+-. |-.+..-+++.+|..+
T Consensus 187 ~SDqahssveka~~i-~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGl-IPf~v~at~G--TT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 187 CSDQAHSSVEKACLI-AGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGL-IPFFVCATLG--TTSSCAFDELEELGPV 260 (511)
T ss_pred ecCcccchHHHhHhh-cceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCC-ccEEEEEeec--CccccccccHHHhcch
Confidence 677788888887665 499999999876 899999999999998766653 3334433332 2233466789999999
Q ss_pred HhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe------------cCh
Q 011570 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS------------YND 295 (483)
Q Consensus 228 a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~------------~~~ 295 (483)
|+++|+|+.+|.+|++..+.. +.+..+..-.+ .-+. +-.-.||.+ +.-.-+.-+.. .+-
T Consensus 261 c~~~glWLHVDAAYAGsa~iC-pE~r~l~rGie-----~aDS--fn~n~hK~~-~vnfDCs~lWvkd~~~~~~~~~vdp~ 331 (511)
T KOG0628|consen 261 CREEGLWLHVDAAYAGSAFIC-PEFRYLMRGIE-----YADS--FNFNPHKWL-LVNFDCSPLWVKDGTKLSRAFNVDPL 331 (511)
T ss_pred hhhcCEEEEeehhhccccccC-HHHHHHhhcch-----hhcc--ccCChhhee-EEeeeeecceeecCceeeeeeecChH
Confidence 999999999999999876665 44443332111 0011 112334543 22222221111 111
Q ss_pred HHHHHHH-Hhhhc--CCCC------hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEE
Q 011570 296 QVVSCAR-KMSSF--GLVS------SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLF 365 (483)
Q Consensus 296 ~l~~~~~-~~~~~--~~~s------~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f 365 (483)
.+..... ...++ |.++ ++-...+.+.+.-.. +++++++. .+..+.+.+.+.+- .+++..+.---.
T Consensus 332 yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~-lq~~iR~h----~~La~~fe~lv~~d~~FE~~~~~~lgL 406 (511)
T KOG0628|consen 332 YLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVEN-LQNYIREH----VRLAKEFETLVRADPRFEIVNKRILGL 406 (511)
T ss_pred hhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHH-HHHHHHHH----HHHHHHHHHHhhcCCcceeecccccce
Confidence 1211111 11111 2111 111112222222211 12222222 22222333333222 456554333225
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+.+++... . +....+..++-....|.+.|.+.= +.-.+|++++. +++++++++.+.|.+......++
T Consensus 407 vcFRlk~~---N--~~ne~Ll~~in~~g~i~l~~~~l~---gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 407 VCFRLKGD---N--EINEALLNRLNSSGRIHLVPASLH---GKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred eEEeecCC---c--HHHHHHHHHHHhcCcEEEEEeeec---ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 55677642 1 223477888887778988887631 23369999976 48899999999999888776554
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-05 Score=77.19 Aligned_cols=177 Identities=18% Similarity=0.170 Sum_probs=122.3
Q ss_pred CCCcEEEeCChhHHHHHHHHHhcCCCCeEE-----EeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 118 DPDRIVMSGGATGAHETVAFCLADPGDAFL-----VPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vl-----v~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
.++.++++|..+.++..++.++..++..|+ ++ +..+.+.+.++.. |++++.+-... .-...+++.+|.+
T Consensus 82 ~aea~~ivnnn~aAVll~~~al~~~~EvVis~g~lV~-gg~~~v~d~~~~a-G~~l~EvG~tn----~t~~~d~~~AIne 155 (395)
T COG1921 82 GAEAAAIVNNNAAAVLLTLNALAEGKEVVVSRGELVE-GGAFRVPDIIRLA-GAKLVEVGTTN----RTHLKDYELAINE 155 (395)
T ss_pred chhheeeECCcHHHHHHHHhhhccCCeEEEEcccccc-CCCCChhHHHHHc-CCEEEEecccC----cCCHHHHHHHhcc
Confidence 478899999999999999999987665554 33 5777888888886 99999987543 2478889999975
Q ss_pred HHhcCCceeEEEEeCCCC-CCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEE
Q 011570 193 AQESNIRIKGVLITNPSN-PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~N-PtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi 271 (483)
++++++-++-+| +.=..++ +++++++|+++|+++++|.+-+..+-.. +.+..+.. ....+
T Consensus 156 ------~ta~llkV~s~~~~f~~~l~---~~~l~~ia~~~~lpvivD~aSg~~v~~e----~~l~~~la------~GaDL 216 (395)
T COG1921 156 ------NTALLLKVHSSNYGFTGMLS---EEELVEIAHEKGLPVIVDLASGALVDKE----PDLREALA------LGADL 216 (395)
T ss_pred ------CCeeEEEEeecccccccccc---HHHHHHHHHHcCCCEEEecCCccccccc----cchhHHHh------cCCCE
Confidence 777776665444 3222345 6677888889999999999987643222 23333322 24456
Q ss_pred EEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhc
Q 011570 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATML 322 (483)
Q Consensus 272 ~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l 322 (483)
++.|-.|.+ .|.+.|.+++ .+++++.++.... ..-+..+..+++.++|
T Consensus 217 V~~SgdKll--gGPqaGii~G-kKelI~~lq~~~l~Ralrv~K~tla~l~~aL 266 (395)
T COG1921 217 VSFSGDKLL--GGPQAGIIVG-KKELIEKLQSHPLKRALRVDKETLAALEAAL 266 (395)
T ss_pred EEEecchhc--CCCccceEec-hHHHHHHHHhhhhhhhhhcCcHhHHHHHHHH
Confidence 778999987 5888999999 5666666544321 2345555555554444
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.7e-06 Score=75.85 Aligned_cols=175 Identities=22% Similarity=0.274 Sum_probs=115.4
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeC-CCCcChHHHHhhh---------
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT-PYYPGFDRDLRWR--------- 163 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~~~~~~~~~--------- 163 (483)
-|...|....|+-++.. ...-..-+.+ ++++|..++..+++|||+.+.-. --|....+.+...
T Consensus 65 ~GRdtLe~vyA~vf~aE------~a~VRpq~is-GTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~gSL~d 137 (416)
T COG4100 65 LGRDTLERVYAQVFGAE------AALVRPQIIS-GTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQGSLKD 137 (416)
T ss_pred cchhHHHHHHHHHhccc------cceeeeeeec-chhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCcccHHH
Confidence 46667777777766521 1112334444 58899999999999999977443 3355555443221
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEK--NIHLVCDEI 240 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Dea 240 (483)
+|+....+|+..++ .+|.+.+..++.+ ++|+|-+.-- ..-.--.++.+++++++.+.++- ++++++|.+
T Consensus 138 fgi~Y~~v~Lt~~g--kiD~~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNC 209 (416)
T COG4100 138 FGIKYKAVPLTADG--KIDIQAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNC 209 (416)
T ss_pred hCcceeecccccCC--cccHHHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 36778888887655 7999999999975 8998877632 22122237889999999998774 799999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCce--EEEEEecChHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR--VGIIYSYNDQVVS 299 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR--iG~li~~~~~l~~ 299 (483)
|++++-.. .+.. -...++.+|+-|.-| .|+- -||+.+. +.+.+
T Consensus 210 YGEFvE~~--EPt~------------vGaDliAGSLIKNpG-GgiaktGGYiaGk-~~~ve 254 (416)
T COG4100 210 YGEFVEEK--EPTH------------VGADLIAGSLIKNPG-GGIAKTGGYIAGK-AELVE 254 (416)
T ss_pred chhhhhcc--Cccc------------cchhhhccceeeCCC-Cceeeccceeech-HHHHH
Confidence 99864332 2111 133356788889876 5532 2588884 44443
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.8e-05 Score=74.71 Aligned_cols=326 Identities=12% Similarity=0.136 Sum_probs=190.3
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cC-CC---CeEEEeCCCCcChHHHHhhhcC
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----AD-PG---DAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~-~g---d~Vlv~~P~y~~~~~~~~~~~G 165 (483)
++...+..++-+++...++. + +.+-=..|.|+++++...-... .. .| ..++++...+..+....+. ++
T Consensus 116 p~~~~~e~~~Vnm~~~L~~~--~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~y-f~ 191 (491)
T KOG1383|consen 116 PVVRKLEAECVNMIANLFNA--P-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARY-FE 191 (491)
T ss_pred chhHHHHHHHHHHHHHHhcC--C-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhh-EE
Confidence 35567778887887777661 1 2234556889998854443332 11 22 3566777777777666665 49
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh-cCcEEEEccccccC
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE-KNIHLVCDEIYAAT 244 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~-~~~~iI~Deay~~~ 244 (483)
+++..+|+++ ++|.+|+..+.+.+.+ ++..++..-|+-|+|.+=+ +++|.++..+ +++.|.+|.+-+.+
T Consensus 192 v~l~~V~~~~-~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgF 261 (491)
T KOG1383|consen 192 VELREVPLDE-GDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEIED---VEKLADLLLEIWDIPIHVDACLGGF 261 (491)
T ss_pred EEEEeeeccc-cceEecHHHHHHHhcc------ceEEEEEEcCCCCccchhh---HHHHHHHHHHHhCCceeecccCccc
Confidence 9999999986 6899999999999875 8999999999999998755 7888888878 99999999999886
Q ss_pred ccC-CCCCcchHHHhhhhccccCCCeEEEE-ecCccccCCCCceEEEEEecChHHHHH-H----HH----hhhc-CCCC-
Q 011570 245 VFT-KESSFVSIAEIIDQDIACNRNLIHIV-YSLSKDMGFPGFRVGIIYSYNDQVVSC-A----RK----MSSF-GLVS- 311 (483)
Q Consensus 245 ~~~-~~~~~~s~~~l~~~~~~~~~~~vi~~-~S~SK~~g~~GlRiG~li~~~~~l~~~-~----~~----~~~~-~~~s- 311 (483)
+-. .... ..-.++ ....|-.+ .+-+| ||+.--..||++-.++.+... + .. ..++ ...|
T Consensus 262 i~p~~~~~-~~~fdF-------r~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR 332 (491)
T KOG1383|consen 262 INPAGYLN-EEEFDF-------RVPGVTSISADGHK-YGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSR 332 (491)
T ss_pred cccccccC-cccccc-------CCCCceeEeeccce-eeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCC
Confidence 542 1011 001111 11222222 24455 444433478888755443221 1 00 0011 0111
Q ss_pred ----hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 312 ----SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 312 ----~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
..+|.+..--+..++| .+..+.+.+....+.+.+++. ++.+....---|+...-.. .+..++.
T Consensus 333 ~g~~va~~wa~~~~lG~eGY-----~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~-------~~i~els 400 (491)
T KOG1383|consen 333 PGSQVAAQWAALMSLGEEGY-----RENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSND-------VNIFELS 400 (491)
T ss_pred cccHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCc-------cchhhhh
Confidence 1233333333444443 445566777888899999887 6665543221233221111 1122333
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhccCccchhhccccccceeccc
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEAKVPNKKKLCWQRSLRLSMSS 460 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (483)
. ++++.|-.+..-. | +..+-+++.. ..++--++++.-|++++++....+-++..+.+=+.-+-..+.+
T Consensus 401 d-~l~~~GW~lnalq-~----P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~~~~~~~~a~yg~a~~~~~ 470 (491)
T KOG1383|consen 401 D-LLRKKGWILNALQ-F----PAAIHICVTRVHAREDVADRFVADIRKVVEELKSLPESKTHGMAAIYGLAQKTPD 470 (491)
T ss_pred H-HHHhcCcCccccC-C----CCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCCCcccCcccchhhhhhcCCc
Confidence 4 4556687665433 2 1123344422 2445568889999999999887776666665433333334433
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-05 Score=72.59 Aligned_cols=217 Identities=13% Similarity=0.149 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhh
Q 011570 182 TMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260 (483)
Q Consensus 182 d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~ 260 (483)
.++++|+.|.++..++..+.+|++.-.+.-.|. --|++..+++.+++++||+.+|+||+..+..-+ ..++.-....-
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaT--Gk~WaHehw~l 331 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGAT--GKFWAHEHWNL 331 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCcc--CceeeehhcCC
Confidence 578899999998777656666666544665555 458899999999999999999999999764222 23332221111
Q ss_pred hccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH-HHHHhhhcCCCChHHHHHH---HHhcCChhHHHHHHHHHH
Q 011570 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS-CARKMSSFGLVSSQTQHLI---ATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~-~~~~~~~~~~~s~~~q~~~---~~~l~~~~~~~~~~~~~~ 336 (483)
..+..++ ||||-|- .| ||... .+..-. ..+.+.. |+..+.-...+ ...+.+.+. .
T Consensus 332 -----~~PpD~v--TFSKK~q-~g---Gffh~-~~frpn~pYrifNT-WmGdP~k~lll~~vv~~I~~~~L--------l 390 (484)
T KOG1405|consen 332 -----DSPPDVV--TFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNT-WMGDPSKNLLLEEVVQEIKREDL--------L 390 (484)
T ss_pred -----CCCccce--ehhhhhh-cC---ccccC-cccCCCchHHHhhh-hcCChHHHHHHHHHHHHHhHHHH--------H
Confidence 2233333 8999984 65 66554 222111 1222222 32333222222 233333322 1
Q ss_pred HHHHHHHHHHHHhhhcC-----C-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 337 KRIAERHKAFTWGLSQV-----G-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~~-----g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
...+..-+.+.+.|.++ | +.-....| -|+-+++|.... ...+... ++-.||.+-. |+ ...
T Consensus 391 ~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrG-TF~a~d~ps~~~------Rdk~i~~-~~~nGv~~GG---Cg---~~s 456 (484)
T KOG1405|consen 391 NNVAHVGKALLKGLLELQAKYPGKINNLRGRG-TFIAWDCPSGSI------RDKLILI-ARLNGVNLGG---CG---DKS 456 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhcccccc-eEEEEeCCChHH------HHHHHHH-HHHcCceecc---cc---cce
Confidence 22222334444444443 1 23334455 488888886421 1133333 4455876542 22 344
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
+|+-.+. ..+...+-+++++.+.+.
T Consensus 457 iRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 457 IRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred eeeccceeehhhhHHHHHHHHHHHhc
Confidence 6666654 377788888999888775
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0014 Score=64.65 Aligned_cols=271 Identities=19% Similarity=0.232 Sum_probs=151.4
Q ss_pred cCCCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeecCCCCCcccCHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVCDSSNDFKVTMEALEAAY 190 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i 190 (483)
.+-.|--+-.++|.+=..++.+. -.+..+|+++.-+|+.+.+.++-+ .|.+++.++.+ |++.|+++
T Consensus 135 m~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~- 206 (450)
T COG0403 135 LDVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESA- 206 (450)
T ss_pred CCcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhc-
Confidence 44556566667776656555554 233589999999999998887654 36777766644 56777766
Q ss_pred HHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEE-ccccccCccCCCCCcchHHHhhhhccccCCCe
Q 011570 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVC-DEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269 (483)
Q Consensus 191 ~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~-Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 269 (483)
.+ ..+-++++.+|+. .|. ..+++.+|.+.++++|.++++ =|.-+...... + ...+-
T Consensus 207 ~~-----~~~~gv~vQyP~~-~G~--~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~p--P-------------Ge~GA 263 (450)
T COG0403 207 DD-----GDVFGVLVQYPNT-FGI--VEEDLRALIEAAHSAGALVIVAADPLALGLLKP--P-------------GEFGA 263 (450)
T ss_pred cc-----cCeEEEEEecCCC-CCc--cchhHHHHHHHHhhcCCEEEEEechhHhhccCC--c-------------cccCC
Confidence 32 3678899999984 663 334699999999999876654 22221111111 0 13355
Q ss_pred EEEEecCcc---ccCCCCceEEEEEecChHHHHHH----------------------------HHhh-hcCCCChHHHHH
Q 011570 270 IHIVYSLSK---DMGFPGFRVGIIYSYNDQVVSCA----------------------------RKMS-SFGLVSSQTQHL 317 (483)
Q Consensus 270 vi~~~S~SK---~~g~~GlRiG~li~~~~~l~~~~----------------------------~~~~-~~~~~s~~~q~~ 317 (483)
.|++++..- -+|..|-.+||..+..+ +.+.+ ++-+ ..+-++..+..+
T Consensus 264 DIvvG~~QrfGvPmgfGGPhag~fA~~~~-~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA 342 (450)
T COG0403 264 DIVVGSAQRFGVPMGFGGPHAGYFAVKDE-FKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLA 342 (450)
T ss_pred ceEEecCcccCCCcCCCCcceeeeeEhHh-HhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHH
Confidence 577766443 35666778888887433 22210 0000 011122222222
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
+++.+-.--+-.+-+++...+..+...++.+.|.+. |+++... .+|-.+.+.-.. .....+..+.. ..|+
T Consensus 343 ~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~-----~~~~~l~~~~~-~~G~ 414 (450)
T COG0403 343 LAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPE-----EVAEALLAAAI-AGGI 414 (450)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecch-----hHHHHHHHHHH-hcCC
Confidence 111110000002335667777788889999999965 5776644 455444332110 01113333333 3466
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
-++.- .+..+=+++.. .++++++.+++.+...
T Consensus 415 ~L~~~------~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 415 NLRRV------DADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred ceeee------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 65532 23356777755 4788899888887653
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.7e-06 Score=79.30 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCC---Cc---ChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHH
Q 011570 118 DPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY---YP---GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~---y~---~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
.++..+++|+...++.+++.++.. |.+|++..-. ++ .+.+.++.. |++++.|-... .-.+++++++|.
T Consensus 61 gAeaA~VvNnnaAAv~L~l~~la~-~~EvIvsRGelVeiGgsFRip~vm~~s-Ga~lvEVGttN----~t~~~Dye~AI~ 134 (367)
T PF03841_consen 61 GAEAALVVNNNAAAVLLALNTLAK-GKEVIVSRGELVEIGGSFRIPDVMRQS-GARLVEVGTTN----RTHLSDYEKAIT 134 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccc-ccccccccccc----cccccccccccc
Confidence 467788888888899998888764 5556654321 22 133556654 99998887543 246788999997
Q ss_pred HHHhcCCceeEEEEeCCCCCC--cCCCCHHHHHHHHHHHhhcCcEEEEccccccCc----cCCCCCcchHHHhhhhcccc
Q 011570 192 KAQESNIRIKGVLITNPSNPL--GTFLDRETLKDIVSFINEKNIHLVCDEIYAATV----FTKESSFVSIAEIIDQDIAC 265 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPt--G~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~----~~~~~~~~s~~~l~~~~~~~ 265 (483)
+ +|.+++..+++|-. |.. ..-.++++++++++|++++|+|-.-+.+. |.- +.-+++.....
T Consensus 135 e------~Ta~ll~Vh~Sn~~i~GFt-~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl-~~Ep~v~~~~~----- 201 (367)
T PF03841_consen 135 E------NTAALLKVHTSNFRIQGFT-GEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGL-PDEPTVQEYLA----- 201 (367)
T ss_dssp ---------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCC-----
T ss_pred c------ccccccccccccccccccc-ccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccC-ccccHHHHHhh-----
Confidence 6 88899999998863 222 11238888999999999999998863321 111 11133443332
Q ss_pred CCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcC---C-hhH-----HHHHHHH
Q 011570 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLS---D-DQF-----VEKFIAE 334 (483)
Q Consensus 266 ~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~---~-~~~-----~~~~~~~ 334 (483)
..-.+++.|-.|.+| |-..|.+++ .+++++.+++.... .-+.-....++.+.|. + +.. ..+.+..
T Consensus 202 -~GaDlV~fSGdKlLG--GPQaGiI~G-kk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~ 277 (367)
T PF03841_consen 202 -AGADLVTFSGDKLLG--GPQAGIIVG-KKELIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQ 277 (367)
T ss_dssp -CT-SEEEEETTSSSS--S-S-EEEEE-EHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-------------------
T ss_pred -cCCCEEEEECCCcCC--CCCeEEEEe-CHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 345677889999986 556899999 56677666543221 2355555554443332 1 110 0122344
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 011570 335 SAKRIAERHKAFTWGLSQ 352 (483)
Q Consensus 335 ~~~~l~~~~~~l~~~L~~ 352 (483)
..+.++++.+.+...|..
T Consensus 278 ~~~~L~~rA~~l~~~l~~ 295 (367)
T PF03841_consen 278 SLEELRARAERLAAQLKA 295 (367)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 445566666666665554
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0051 Score=67.70 Aligned_cols=259 Identities=17% Similarity=0.151 Sum_probs=139.5
Q ss_pred CCCcEEEeCChh---HHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeecCCCCCcccCHHHHHHHHH
Q 011570 118 DPDRIVMSGGAT---GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 118 ~~~~i~it~G~~---~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
+..|--+-.|++ ||+.++.+.--.+..+|+++.-.++.+...++-. .|.+++. +++++.+.
T Consensus 140 ~vaNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~ 206 (954)
T PRK12566 140 DLANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAA 206 (954)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCC
Confidence 444444444555 4444443322222468999999999888766543 3666653 22333222
Q ss_pred HHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEE
Q 011570 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi 271 (483)
.++-+|++.+||. .|.+-+ +++|++.++++|.++| +.+.- +...- - .+.. +.+-.|
T Consensus 207 ------~~~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~gal~~-~~~d~-laL~l-l--~~Pg---------e~GADI 262 (954)
T PRK12566 207 ------HAVFGALLQYPDT-HGEIRD---LRPLIDQLHGQQALAC-VAADL-LSLLV-L--TPPG---------ELGADV 262 (954)
T ss_pred ------CCEEEEEEECCCC-ceEEcc---HHHHHHHHHHcCCEEE-EEeCH-HHHhC-C--CChh---------hcCCcE
Confidence 2678899999985 788844 8899999999988755 33221 11111 0 1111 234455
Q ss_pred EEe---cCccccCCCCceEEEEEecChHHHHHHH------------------------------HhhhcCCCChHHHHHH
Q 011570 272 IVY---SLSKDMGFPGFRVGIIYSYNDQVVSCAR------------------------------KMSSFGLVSSQTQHLI 318 (483)
Q Consensus 272 ~~~---S~SK~~g~~GlRiG~li~~~~~l~~~~~------------------------------~~~~~~~~s~~~q~~~ 318 (483)
+++ +|+=-+|..|--.||+.+. +.+.+.+. +.++ +-++..+..++
T Consensus 263 ~vG~~Q~fGvp~~~GGP~ag~~a~~-~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtS-NICT~qaL~A~ 340 (954)
T PRK12566 263 VLGSTQRFGVPMGYGGPHAAYFACR-DDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANS-NICTAQVLLAN 340 (954)
T ss_pred EeeCCCcCCCCCCCCCCCeeeeeeh-HHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccc-hhhHHHHHHHH
Confidence 565 3344455556668888884 33332210 0111 11121111111
Q ss_pred -HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEe
Q 011570 319 -ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 319 -~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v 397 (483)
+.++..- +-.+-+++..++...+..++.+.|.+.|+++... .||=-+.+.-. . ...++..+.+ +.||-+
T Consensus 341 ~a~~Y~~~-~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~~~~--~fF~~~~v~~~--~----~~~~~~~~a~-~~~~n~ 410 (954)
T PRK12566 341 IAGFYAVY-HGPEGLKRIAQRVHRLTAILAAGLEAKGIKRLNR--HFFDTLTLEVG--G----AQAAIIESAE-AARINL 410 (954)
T ss_pred HHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CccceEEEEcc--C----CHHHHHHHHH-HCCCee
Confidence 1111000 0012245556667778888999999888876533 45544444321 0 0224444444 458877
Q ss_pred eCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHH
Q 011570 398 SPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 398 ~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~ 431 (483)
+-- +++.+.||+.. .+.++++.++..+.
T Consensus 411 r~~------~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 411 RIL------GRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred EEe------CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 632 24578899966 48888888888774
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.03 Score=58.01 Aligned_cols=316 Identities=19% Similarity=0.225 Sum_probs=172.5
Q ss_pred cccccCCCC---CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChh---HHHHHHHHHhcCCCC----eEEEeCCCCc
Q 011570 85 KGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT---GAHETVAFCLADPGD----AFLVPTPYYP 154 (483)
Q Consensus 85 ~~~~~Y~~~---~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~---~al~~~~~~l~~~gd----~Vlv~~P~y~ 154 (483)
..++.|.|. +|+.++-..+.+++-...| .+.-.+-..+|++ .++..+-..+..+|+ ..++|.-.++
T Consensus 566 anIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHG 641 (1001)
T KOG2040|consen 566 ANIHPFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHG 641 (1001)
T ss_pred ccCCCCCchHHHhhHHHHHHHHHHHhheeec----ccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccC
Confidence 344555443 5788888888888876555 2222333344443 344444444444553 4566777777
Q ss_pred ChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 155 ~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
.--..+... |.++++|..+..+ .+|..+|.+..+++. .+-.++.++.|+. -|.. ++.+..++++.++||.-
T Consensus 642 TNPASA~Ma-gmkvvpV~~~~~G--~id~~dLk~kaekh~---~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHehGGQ 712 (1001)
T KOG2040|consen 642 TNPASAAMA-GMKVVPVGCDANG--NIDMVDLKAKAEKHK---DNLAALMVTYPST-HGVF--EEGIDDICDIIHEHGGQ 712 (1001)
T ss_pred CChhhHHhc-CCEEEEeeccCCC--CccHHHHHHHHHHhh---hhhheeEEecccc-cccc--cccHHHHHHHHHhcCCE
Confidence 766666664 9999999988655 799999999877653 2566888898875 2433 34589999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC----CceEEEEEecChHHHHHHHH-------
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP----GFRVGIIYSYNDQVVSCARK------- 303 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~----GlRiG~li~~~~~l~~~~~~------- 303 (483)
|..|.+-..-..+ +.+-. +....+.---++|+|..| |-.+|=+-. ++-+...+..
T Consensus 713 VYlDGANMNAqVG-------lc~pG------d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgV-K~HLapfLP~HpVvs~~ 778 (1001)
T KOG2040|consen 713 VYLDGANMNAQVG-------LCRPG------DIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSPG 778 (1001)
T ss_pred EEecCCCccceec-------ccCCc------cccccceeecccceeeecCCCCCCCCCccch-hhhccccCCCCCccCCC
Confidence 9999986432111 11000 111112222456666432 222333322 2222211110
Q ss_pred ----hhhcCCCCh---------HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc---eEEE
Q 011570 304 ----MSSFGLVSS---------QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA---GLFL 366 (483)
Q Consensus 304 ----~~~~~~~s~---------~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~---g~f~ 366 (483)
..+.+.+++ +...+-.++....+. +..-+.-.-+.++|.+.|+.+ .+-+....+ .=|
T Consensus 779 ~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL-----~~as~~AiLNaNYMakRLe~hYkil~~~~~~~vaHEF- 852 (1001)
T KOG2040|consen 779 RPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGL-----KDASKIAILNANYMAKRLESHYKILFRGENGLVAHEF- 852 (1001)
T ss_pred CCCCCCCccceeccCCCcceeehhHHHHHHHhccccc-----chhhHHHhhhhHHHHHHHhhccceeEecCCcceeeee-
Confidence 001111111 122233344444332 121222234557888888876 333333222 113
Q ss_pred eeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 367 WMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 367 ~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+++..+.+...++ ..+++++|. .+|..--..++. -.+.+-|-... .+.+++++++++|-.+-++.+
T Consensus 853 IlD~r~fK~~agie-avDvAKRL~-DYgFHaPTmswP---V~gtLMIEPTESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 853 ILDLRPFKKTAGIE-AVDVAKRLM-DYGFHAPTMSWP---VAGTLMIEPTESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred eeechhhccccCCc-HHHHHHHHH-hccCCCCccccc---cCCceEeccCccccHHHHHHHHHHHHHHHHHHH
Confidence 25666554444333 348889888 568764333332 35566665543 366788888888876555544
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.015 Score=53.75 Aligned_cols=301 Identities=15% Similarity=0.169 Sum_probs=143.0
Q ss_pred CCCcEEEeCChhHHHHHHHHHhc--CCCC-eEEEeCC-CCcChHHHHhhhcCcEEEEee-cCCCCCcccCHHHHHHHHHH
Q 011570 118 DPDRIVMSGGATGAHETVAFCLA--DPGD-AFLVPTP-YYPGFDRDLRWRTGVQLVPVV-CDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~--~~gd-~Vlv~~P-~y~~~~~~~~~~~G~~~~~v~-~~~~~~~~~d~~~l~~~i~~ 192 (483)
-+..+++---+...+.+.+..+. +|.. .|+-+.- .-+.+.. +-. +|.+.+-+. +.+.+...-|++.+++.+++
T Consensus 75 v~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ks-i~~-agfepiiie~i~d~d~l~tdleav~~~iee 152 (432)
T KOG3843|consen 75 VANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKS-IIH-AGFEPIIIENILDGDELITDLEAVEAIIEE 152 (432)
T ss_pred hhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHH-HHh-cCCCceeeeccccchHHHHhHHHHHHHHHH
Confidence 34455544333344566666663 3433 3332222 2222322 222 387766554 33333445588888888876
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCC-eEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN-LIH 271 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~-~vi 271 (483)
. |+..-+.+.+.-+ .=..-+++.+++|+.+|..|+++-|+..+|+. .. . ..+..+.... ..+ ..-
T Consensus 153 ~---g~dcilci~stts--cfapr~pd~leaiaaica~~diphivnnaygl---qs-e--e~i~~iaa~~---~~grida 218 (432)
T KOG3843|consen 153 L---GEDCILCIHSTTS--CFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL---QS-E--ECIHKIAAAA---ECGRIDA 218 (432)
T ss_pred h---CCceEEEEeeccc--ccCCCCCchHHHHHHHHHccCchhhhcccccc---ch-H--HHHHHHHHHh---hhccHHH
Confidence 4 3333222222111 11122567899999999999999999999973 32 1 2233222210 112 234
Q ss_pred EEecCccccCCCCceEE-EEEe-cChHHHHHHHHhhhcCCCChHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHH
Q 011570 272 IVYSLSKDMGFPGFRVG-IIYS-YNDQVVSCARKMSSFGLVSSQTQHLIATML--SDDQFVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 272 ~~~S~SK~~g~~GlRiG-~li~-~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l--~~~~~~~~~~~~~~~~l~~~~~~l~ 347 (483)
++.|+-|.|-.| +| .+++ -++..++.+.++.+--..++++.-.+..+| ....+ .+...+..+.+...+..+.
T Consensus 219 ~vqsldknf~vp---vggaiia~fk~n~iq~iak~ypgrasa~ps~dllitll~~gqn~f-~e~~~eqkemf~~l~~ki~ 294 (432)
T KOG3843|consen 219 FVQSLDKNFMVP---VGGAIIAAFKDNFIQEIAKMYPGRASASPSLDLLITLLSLGQNAF-KELFGEQKEMFLKLRNKII 294 (432)
T ss_pred HHHHhhhcceee---cchhHhhHhHHHHHHHHHHhCCCccccCccHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHH
Confidence 568999998544 34 3333 234444444444333223334444444443 33333 3333444444444444444
Q ss_pred HhhhcCCcee-ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe---EeeCCCCC------------CCC----C
Q 011570 348 WGLSQVGIGC-LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL---NVSPGSSF------------HCP----N 407 (483)
Q Consensus 348 ~~L~~~gi~~-~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV---~v~pg~~f------------~~~----~ 407 (483)
+.-+.+|-.+ ..|+.-..+.+.+......+ ..+-..|-..|+. .|| .|.|.... +.- .
T Consensus 295 ~~ae~~~e~l~~~p~n~is~amtl~ti~~~k-~kavt~~gsilfa-k~isgarvv~~~q~kttieg~ef~~f~sht~e~~ 372 (432)
T KOG3843|consen 295 KFAEAIGECLLETPENEISLAMTLKTIDEAK-DKAVTLFGSILFA-KGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQH 372 (432)
T ss_pred HHHHHhhhhhhcCCCchhhhhhhhccCChHH-hhHHHHHHHHHHh-ccccCceEeeccccceeeeceEEeccccccCcCc
Confidence 4444344222 23443333333333211111 1111123333333 354 34443221 100 0
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.+|+-+..+- ++..++++++.||...+.+.++|
T Consensus 373 ~~yln~a~aigm~~hdld~~~~rl~~~~a~~~ke 406 (432)
T KOG3843|consen 373 CAYLNAACAIGMKDHDLDEFFNRLDRCLAAFRKE 406 (432)
T ss_pred hhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 1233333221 57789999999999888776655
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.07 Score=52.03 Aligned_cols=329 Identities=14% Similarity=0.103 Sum_probs=161.0
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
+.+|+.+...+++..++++-..... +...++.-...-++ ..-...+-+...+.+.+.++ +|-+-+=+++-.|
T Consensus 6 ~~nFsaGPa~lp~~vL~~a~~e~~~---~~g~g~svme~SHR---sk~~~~v~~~a~~~lreLl~--iPd~Y~VlflqGG 77 (365)
T COG1932 6 VYNFSAGPAALPPEVLQQAQKELLD---WNGLGMSVMEISHR---SKEFKNVLEEAEKDLRELLN--IPDDYKVLFLQGG 77 (365)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHhh---hccCCcceeeeccc---cHHHHHHHHHHHHHHHHHhC--CCCCceEEEEcCc
Confidence 4688888766776665554433211 00011111111111 11124444444455555555 4322233444566
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-HhhhcCc--EEEEeecCCCCCc--ccCHHHHHHHHHHHHhcCCceeE
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-LRWRTGV--QLVPVVCDSSNDF--KVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-~~~~~G~--~~~~v~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++....++...|+.+...-.+..-.|...... ++.. +. ++.... ....+| -++++... +. .+..-
T Consensus 78 at~qf~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~-~~~~~~~~~~-~~~~~~~~iP~~~~~~--~~------~~~ay 147 (365)
T COG1932 78 ATGQFAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKV-GKQPKLIDAR-IEEAGYGSIPDLSKWD--FS------DNDAY 147 (365)
T ss_pred cHHHHHHHHHhhhcccCceeEeeeehhHhHHHHHHHh-cccccccccc-eeccCccCCCChhhcc--cC------CCccE
Confidence 77888888888876654312333334332221 2222 43 222211 112222 23333332 11 12233
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|.+|.-..-+|.-++. ...+. .+.++|+|-.-.- +.. + .++..+ .++-.|.-|.+|-
T Consensus 148 v~~~~NeTi~Gv~v~~--~p~~~-----~~~~~v~D~SS~i--lsr--~-iDvsk~-----------dviyagaQKnlGp 204 (365)
T COG1932 148 VHFCWNETISGVEVPE--LPDIG-----SDGLLVADASSAI--LSR--P-IDVSKY-----------DVIYAGAQKNLGP 204 (365)
T ss_pred EEEecCCcccceEccC--CCCCC-----CCceEEEecccHH--hcC--C-CChhHc-----------ceEEEehhhccCc
Confidence 6666444466776661 11111 1267888877543 332 1 343333 2445799999998
Q ss_pred CCceEEEEEecChHHHHHHHHh---------------hhcCCCChHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHH
Q 011570 283 PGFRVGIIYSYNDQVVSCARKM---------------SSFGLVSSQTQHLIATM----LSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~---------------~~~~~~s~~~q~~~~~~----l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
.| ++.++..++.+.+ .+.. +.+++++.++.+..... ...++ ++...++-.+..
T Consensus 205 aG--ltvvIvr~~~l~r-~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GG-----l~~~~~rn~~ka 276 (365)
T COG1932 205 AG--LTVVIVRPDLLER-AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGG-----LEALEARNQAKA 276 (365)
T ss_pred cc--eEEEEEcHHHHhc-ccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHH
Confidence 88 8888885554433 3221 11222333333322221 22222 233344445666
Q ss_pred HHHHHhhhcCCce---e-ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-C
Q 011570 344 KAFTWGLSQVGIG---C-LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-M 418 (483)
Q Consensus 344 ~~l~~~L~~~gi~---~-~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~ 418 (483)
+.|.+.+.+.++- + .....-+-+.+++... +-+..|...+. ++|+...-|. ...+.+|+++.. +
T Consensus 277 ~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~------~ld~~fv~eae-~~gl~~lkGh----r~vgGmRasiynA~ 345 (365)
T COG1932 277 QLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDA------ELDKGFVAEAE-AAGLIYLKGH----RSVGGLRASIYNAV 345 (365)
T ss_pred HHHHHHHHhCCccccccchhhccceeEEEEcCcH------HHHHHHHHHHH-HcCCceeccc----cCCCceeeeeecCC
Confidence 7777777665431 1 1234456677777631 11224555544 5587776663 233449999966 5
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSFMLK 436 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l~~ 436 (483)
+.++++.+++-++.+.++
T Consensus 346 ~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 346 PLEDVEALTDFMDWFEET 363 (365)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 888888888888776654
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.06 Score=60.73 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=129.0
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh------cCCCCeEEEeCCCCcChHHHH
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL------ADPGDAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~Vlv~~P~y~~~~~~~ 160 (483)
...|.++.|...+|..||.|+..+++ +++++++|++.+.-..++..+++.+ ++.+.+-.++ ..+...+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 492 (1082)
T PLN02672 419 YFPCEPPAGSKRFRNLIAGFMRIYHH--IPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLP----KKWLTSL 492 (1082)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcC--CcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCC----HHHHhHh
Confidence 45688889999999999999999988 8899999999999999998887665 2333221111 1222222
Q ss_pred hhh-------c--CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc
Q 011570 161 RWR-------T--GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK 231 (483)
Q Consensus 161 ~~~-------~--G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~ 231 (483)
... . .+.++..|.. -+.+.+.|+.. ++++|+..-.. +-..+...++.|++.+++-
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 556 (1082)
T PLN02672 493 AIENATSDSKSDDVITVIEAPRQ--------SDLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEI 556 (1082)
T ss_pred hhhcccccCccCCeEEEEeCCCc--------chHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhh
Confidence 221 0 1233333321 12455566553 67766644332 3334666789999999999
Q ss_pred CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGL 309 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~ 309 (483)
|++++.|..-.. .....+....+..+..+-+ -+.+..++.++-|.-=.+.|-+.+++.-++.+...+.+... .+.
T Consensus 557 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1082)
T PLN02672 557 GARLFLDISDHL-ELSSLPGSNGVLKYLAGHP--LPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGR 633 (1082)
T ss_pred CcEEEEehhhhe-eeccCCCcccHHHHhcCCC--CCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccc
Confidence 999999997431 1232133344555443211 23556667888887445999999999977777666654322 244
Q ss_pred CChHHHH
Q 011570 310 VSSQTQH 316 (483)
Q Consensus 310 ~s~~~q~ 316 (483)
.+.++|.
T Consensus 634 ~~~~~~~ 640 (1082)
T PLN02672 634 TAIISQF 640 (1082)
T ss_pred hHHHHHH
Confidence 5555554
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.32 Score=46.24 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCC---CeEEEeCCCCcC----hHHHHhhhcCcEE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG---DAFLVPTPYYPG----FDRDLRWRTGVQL- 168 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~g---d~Vlv~~P~y~~----~~~~~~~~~G~~~- 168 (483)
......++...+ ...++|.+.|.-+-.+..++.+|.+|- -+|+.+.-.|++ +...++.. |..+
T Consensus 114 e~il~l~~~iVG--------A~e~EvavmNsLTvNlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lh-G~~~e 184 (465)
T KOG3846|consen 114 EPILPLLAPIVG--------AQENEVAVMNSLTVNLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLH-GISPE 184 (465)
T ss_pred hhhhhhhhhhcc--------CCchhhhhHhhhhhHHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhc-CCChH
Confidence 445555555554 467789999999999999999998775 468888777654 33445554 6553
Q ss_pred ---EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 169 ---VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 169 ---~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
+.+... +|.-.+..+++.+.|+. ++....+|+++..+.-||+.++ +.+|-..-+..|++|=.|=+++
T Consensus 185 ~sm~~iePR-EGEetlRteDILd~IEk---ngDeiA~v~fSGvqyYTGQ~Fd---i~aIT~Agq~kgc~VGfDLAHA--- 254 (465)
T KOG3846|consen 185 NSMIQIEPR-EGEETLRTEDILDTIEK---NGDEIALVCFSGVQYYTGQYFD---IGAITFAGQFKGCLVGFDLAHA--- 254 (465)
T ss_pred HheEEeccc-ccccchhHHHHHHHHHh---cCCeEEEEEeecceeecccccc---hhhhhhcccCCCcEechhhhhh---
Confidence 222222 34445777888777765 3446777788888999999999 7777766677799999999987
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
++. -+. -+. +++..+-++.--|...
T Consensus 255 vgN-VpL-~LH---------dWgVDFACWCSYKYln 279 (465)
T KOG3846|consen 255 VGN-VPL-QLH---------DWGVDFACWCSYKYLN 279 (465)
T ss_pred hcC-Cce-EEe---------ecCCceEEEeeecccc
Confidence 454 221 111 3466666777677653
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.32 E-value=11 Score=35.98 Aligned_cols=334 Identities=15% Similarity=0.131 Sum_probs=159.6
Q ss_pred CCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 45 PNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
|..+++|+.+.-.+|.+.+.++...... +...++.-..-.++ +.....+.+.--..+.+++. ++-+-+-+++
T Consensus 5 ~~~vvnFaaGPAklp~~VL~e~qkdl~n---~~g~GisV~EmSHR---sk~f~kii~~tes~lreLln--iPdn~~vlf~ 76 (370)
T KOG2790|consen 5 PERVVNFAAGPAKLPESVLLEAQKDLLN---FNGSGISVMEMSHR---SKDFAKIINDTESLLRELLN--IPDNYKVLFL 76 (370)
T ss_pred ccceeecCCCcccCCHHHHHHHHHHhhc---cCCCcceEEEeccc---chhHHHHHHHHHHHHHHHHc--CCCceeEEEE
Confidence 4567899988777776666655443211 11111111111111 11123333333344444443 3322233555
Q ss_pred eCChhHHHHHHHHHhc--CCC---CeEEEeCCCCcChHHHHhhhcCcE-EEEeecCCCC-CcccCHHHHHHHHHHHHhcC
Q 011570 125 SGGATGAHETVAFCLA--DPG---DAFLVPTPYYPGFDRDLRWRTGVQ-LVPVVCDSSN-DFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 125 t~G~~~al~~~~~~l~--~~g---d~Vlv~~P~y~~~~~~~~~~~G~~-~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~ 197 (483)
-.|++.....+...|+ +.| |.|++-..+--.+.++-+ + |.. .+..++.+.. +--+|.+.++. +
T Consensus 77 QGGGt~qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk-~-~~~~~V~~~~k~y~ygkvPd~~~w~~--------~ 146 (370)
T KOG2790|consen 77 QGGGTGQFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKK-Y-GTPNIVIPKLKSYTYGKVPDPSTWEL--------N 146 (370)
T ss_pred eCCCcccccccchhhhccccCCccceEEeccccHHHHHHHHh-h-CCceEEeccccccccCcCCChhhccc--------C
Confidence 5667766666665565 333 677777666555555433 3 433 3433332211 11234444432 2
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
++.+.|++|.--.--|.-++.-- .-.-+|.++|.|-.-. |-. .+ .++.. -.+++.+.-
T Consensus 147 ~da~yvyyCaNETVHGVEf~~~P------~~~~~~~vlVaDmSSn---flS-rp-vDvsk-----------~gvi~aGAQ 204 (370)
T KOG2790|consen 147 PDASYVYYCANETVHGVEFDFIP------VNDPKGAVLVADMSSN---FLS-RP-VDVSK-----------FGVIFAGAQ 204 (370)
T ss_pred CCccEEEEecCceeeceecCCCC------CCCCCCceEEEecccc---hhc-CC-ccchh-----------cceEEeccc
Confidence 35567777744333355443110 1134677888887753 333 22 33222 235578899
Q ss_pred cccCCCCceEEEEEecChHHHHHHHH-------------hhhcCCCChHHHH----HHHHhcCChhHHHHHHHHHHHHHH
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARK-------------MSSFGLVSSQTQH----LIATMLSDDQFVEKFIAESAKRIA 340 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~-------------~~~~~~~s~~~q~----~~~~~l~~~~~~~~~~~~~~~~l~ 340 (483)
|.+|.+|+ -.++..++.+...... .+.+++.+.+..+ ....+++.++. +...+.-.
T Consensus 205 KN~G~aG~--Tvvivr~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl-----~a~e~~n~ 277 (370)
T KOG2790|consen 205 KNVGPAGV--TVVIVRKDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGL-----AAMEKLNQ 277 (370)
T ss_pred cccCcccc--EEEEEehhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHHHhcccH-----HHHHHHHH
Confidence 99998885 3344433333222111 0111222222222 23344444442 23333334
Q ss_pred HHHHHHHHhhhcC-Cceeec----CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe
Q 011570 341 ERHKAFTWGLSQV-GIGCLK----SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF 415 (483)
Q Consensus 341 ~~~~~l~~~L~~~-gi~~~~----~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~ 415 (483)
+....+.+.+.+. |+-..+ ...-|-+.+++.+ + +-+.+|.....++ +..-.-|. ..-|.+|-|+
T Consensus 278 ~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~----d--~Le~eFLkeA~~~-~mv~LKGh----RSVGGiRASl 346 (370)
T KOG2790|consen 278 EKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEK----D--ELEAEFLKEAAKE-HMVQLKGH----RSVGGIRASL 346 (370)
T ss_pred HHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecc----h--HHHHHHHHHHHHh-hhhccccc----cccccchhhh
Confidence 5557778888765 532211 1222444444442 1 2233666666655 33322332 2235699999
Q ss_pred cc-CCHHHHHHHHHHHHHHHHH
Q 011570 416 AN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 416 ~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
=+ ++-++.+.+++-++++.+.
T Consensus 347 YNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 347 YNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred hccccHHHHHHHHHHHHHHHHh
Confidence 44 5778877777777766554
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=48 Score=35.45 Aligned_cols=250 Identities=16% Similarity=0.186 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhc---CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRT---GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
+.|++.++.+ ..++.++++...+|+.....++-.. |++++.. |++..... ..++..|+
T Consensus 192 aaEAm~l~~~--~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~----------~~~~~~~s-------~~~v~gvl 252 (1001)
T KOG2040|consen 192 AAEAMALCNR--INKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS----------DIKEADYS-------SKDVSGVL 252 (1001)
T ss_pred HHHHHHHHHh--hcccceEEecCCCCcchhhhhhccccccceeEEec----------CHHHhhcc-------ccceeEEE
Confidence 3445444433 3466679999999998887776431 3332221 22222111 23677888
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC-
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP- 283 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~- 283 (483)
+.-|.. -|.+.+ ..++++.++.++.++++---...+..-. + .. .+...|.++| |--||+|
T Consensus 253 vQYP~t-~G~i~d---~~el~~~a~~~~s~vv~atDLLaLtiLr-p----Pg---------efGaDIavGS-sQRFGVPl 313 (1001)
T KOG2040|consen 253 VQYPDT-EGSVLD---FDELVELAHANGSLVVMATDLLALTILR-P----PG---------EFGADIAVGS-SQRFGVPL 313 (1001)
T ss_pred EEcCCC-CCcccC---HHHHHHHhhccCceEEEeehhhHHHccC-C----hh---------hcCceeeecc-ccccCccc
Confidence 888866 588888 5666777778877765432221111111 1 01 2344566665 3334332
Q ss_pred ---CceEEEEEec--------------------ChHHHHHHHHh-----hhcCCCCh--HHHHHHHHhcCChhH--HHHH
Q 011570 284 ---GFRVGIIYSY--------------------NDQVVSCARKM-----SSFGLVSS--QTQHLIATMLSDDQF--VEKF 331 (483)
Q Consensus 284 ---GlRiG~li~~--------------------~~~l~~~~~~~-----~~~~~~s~--~~q~~~~~~l~~~~~--~~~~ 331 (483)
|--.||..+. ++.+.-.++.. +.-. .|. .+|+.++.+-..-.. -.+-
T Consensus 314 GYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKA-TSNICTAQALLANmaAmyaiYHGp~g 392 (1001)
T KOG2040|consen 314 GYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKA-TSNICTAQALLANMAAMYAIYHGPHG 392 (1001)
T ss_pred cCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhcc-chhhhHHHHHHHHHHHHHhhhcCcHH
Confidence 1111111110 11111111110 0001 111 244444433221000 0123
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEE
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWF 411 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~i 411 (483)
+++..+++....-.+...|+..|-++..-. ||=.+++.-.- +..++..+.+++ +|-++- + +++.+
T Consensus 393 L~~IArrvh~~T~~l~~~l~~aghel~~k~--fFDTLkI~~~~------s~~~~l~rA~~~-~iNlr~---~---ed~ti 457 (1001)
T KOG2040|consen 393 LKEIARRVHNLTLILAEGLKNAGHELQHKP--FFDTLKIRCGC------SAEEVLDRAAKR-QINLRL---V---EDGTI 457 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhcccc--ccceEEEEecC------cHHHHHHHHHhh-cCceEE---e---ecCce
Confidence 556666667777788888888875554322 56555553211 122445555543 565442 1 35678
Q ss_pred EEEecc-CCHHHHHHHHHHHH
Q 011570 412 RVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 412 Ris~~~-~~~e~l~~~l~~L~ 431 (483)
=+++-. .++++++.++..+.
T Consensus 458 gvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 458 GVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred EEeecccccHHHHHHHHHHHc
Confidence 888865 47888888877765
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.40 E-value=27 Score=33.61 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=60.7
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhc--CcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRT--GVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~--G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
++.+-|+||.|++..=..+..-|.+.|-++++.+-.=.+..+..+... | ++..+-+|- -+.+++.+...+-+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdi-----s~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDI-----SDREEIYRLAKKVK 109 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecC-----CCHHHHHHHHHHHH
Confidence 455667777776655555556688888877666544433444444331 4 454444442 14556665555554
Q ss_pred hcCCceeEEEEeCCC---CCCcCCCCHHHHHHHHHHH
Q 011570 195 ESNIRIKGVLITNPS---NPLGTFLDRETLKDIVSFI 228 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~---NPtG~~~~~~~l~~i~~~a 228 (483)
++-.++. |+++|.. .-...-.+.+++++..++-
T Consensus 110 ~e~G~V~-ILVNNAGI~~~~~ll~~~d~ei~k~~~vN 145 (300)
T KOG1201|consen 110 KEVGDVD-ILVNNAGIVTGKKLLDCSDEEIQKTFDVN 145 (300)
T ss_pred HhcCCce-EEEeccccccCCCccCCCHHHHHHHHHHh
Confidence 5544554 6777763 2233446888888887753
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.89 E-value=17 Score=33.40 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=63.1
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeE---EEeCC-----------CCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHH
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAF---LVPTP-----------YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALE 187 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~V---lv~~P-----------~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~ 187 (483)
+.+-+|+......+..++ +.|..| ++..| .-......++. .|..++...... ...-..++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~-~gi~l~~~~~~g--~~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEA-MGIPLVTFDTSG--EEEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHh-cCCceEEEecCc--cchhhHHHHH
Confidence 566788888877776665 344322 11111 11111122333 388888777653 2234578888
Q ss_pred HHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEE
Q 011570 188 AAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHL 235 (483)
Q Consensus 188 ~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~i 235 (483)
++++.. +..+|+ +|.+.+..++.++=.+|.+.|+.+
T Consensus 80 ~~l~~l-----~~d~iv-------~GaI~s~yqk~rve~lc~~lGl~~ 115 (223)
T COG2102 80 EALRRL-----KVDGIV-------AGAIASEYQKERVERLCEELGLKV 115 (223)
T ss_pred HHHHhC-----cccEEE-------EchhhhHHHHHHHHHHHHHhCCEE
Confidence 888754 455666 799999999999999999999753
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=82.38 E-value=9.6 Score=35.29 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=55.7
Q ss_pred EEEeCC-hhHHHHHHHHHhcCCCCeEEE-eCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 122 IVMSGG-ATGAHETVAFCLADPGDAFLV-PTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 122 i~it~G-~~~al~~~~~~l~~~gd~Vlv-~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
|+|+.+ +..+ ..++.+|+.++-.|.+ ..+.-......++.. |++++..+++ |.+.|.++++ .
T Consensus 1 I~V~GatG~~G-~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~-g~~vv~~d~~-------~~~~l~~al~-------g 64 (233)
T PF05368_consen 1 ILVTGATGNQG-RSVVRALLSAGFSVRALVRDPSSDRAQQLQAL-GAEVVEADYD-------DPESLVAALK-------G 64 (233)
T ss_dssp EEEETTTSHHH-HHHHHHHHHTTGCEEEEESSSHHHHHHHHHHT-TTEEEES-TT--------HHHHHHHHT-------T
T ss_pred CEEECCccHHH-HHHHHHHHhCCCCcEEEEeccchhhhhhhhcc-cceEeecccC-------CHHHHHHHHc-------C
Confidence 345544 4444 4444556556654443 443322223334554 9998865543 6888988886 5
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEE
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVC 237 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~ 237 (483)
+..|+++.|.+. ....+.-..+++.|.+.|+-.++
T Consensus 65 ~d~v~~~~~~~~---~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 65 VDAVFSVTPPSH---PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp CSEEEEESSCSC---CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred CceEEeecCcch---hhhhhhhhhHHHhhhccccceEE
Confidence 566777766443 23455678899999888764443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 483 | ||||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 0.0 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-152 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 1e-152 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 1e-152 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 1e-145 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 2e-22 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 2e-19 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 8e-19 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 4e-16 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 7e-16 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 3e-15 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 6e-15 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 1e-14 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 1e-14 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-14 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 1e-14 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 3e-14 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 5e-14 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 7e-14 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-13 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 2e-13 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 2e-13 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 7e-13 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 2e-11 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 4e-11 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 4e-11 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 5e-11 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-09 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 3e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 2e-08 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 2e-08 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-08 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 4e-08 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-07 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 1e-07 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 2e-07 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 2e-07 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 2e-07 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-07 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-07 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 6e-07 | ||
| 2egy_A | 397 | Crystal Structure Of Lysn, Alpha-Aminoadipate Amino | 2e-06 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 3e-06 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 3e-06 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 5e-06 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 8e-06 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 1e-05 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 1e-05 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 3e-05 | ||
| 3if2_A | 444 | Crystal Structure Of Putative Amino-Acid Aminotrans | 7e-05 | ||
| 3fdd_A | 533 | The Crystal Structure Of The Pseudomonas Dacunhae A | 7e-05 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 1e-04 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 2e-04 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 4e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 7e-04 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 8e-04 |
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|2EGY|A Chain A, Crystal Structure Of Lysn, Alpha-Aminoadipate Aminotransferase (Substrate Free Form), From Thermus Thermophilus Hb27 Length = 397 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|3IF2|A Chain A, Crystal Structure Of Putative Amino-Acid Aminotransferase (Yp_265399.1) From Psychrobacter Arcticum 273-4 At 2.50 A Resolution Length = 444 | Back alignment and structure |
|
| >pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 483 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 0.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 0.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 3e-47 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 2e-45 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 6e-45 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 7e-44 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 1e-42 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 1e-41 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 7e-40 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 1e-39 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 1e-38 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 7e-38 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 6e-37 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 2e-36 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 1e-35 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 2e-35 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 2e-35 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 3e-35 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 6e-35 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 8e-35 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 8e-35 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 8e-35 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 1e-34 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 1e-34 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 4e-33 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 6e-33 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 3e-32 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 6e-32 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 1e-31 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 2e-30 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 3e-30 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 1e-29 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 2e-29 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 2e-29 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 1e-28 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 3e-28 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 6e-28 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 9e-27 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 3e-26 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 2e-25 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 2e-25 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 2e-24 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 5e-22 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 4e-21 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 8e-21 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 2e-20 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 7e-20 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 2e-19 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 4e-19 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 6e-18 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 9e-18 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 1e-17 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 1e-17 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 2e-17 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 4e-17 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 7e-17 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 8e-17 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 1e-16 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 8e-16 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 1e-15 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 3e-15 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 3e-14 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 5e-14 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 7e-14 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 2e-12 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 4e-12 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 4e-11 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 7e-11 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 2e-08 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 6e-06 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 2e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 657 bits (1698), Expect = 0.0
Identities = 238/436 (54%), Positives = 322/436 (73%), Gaps = 7/436 (1%)
Query: 9 VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLM 68
+++LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL
Sbjct: 1 MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLA 60
Query: 69 NNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA 128
NP+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++TFDP+ +V++ GA
Sbjct: 61 KNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGA 120
Query: 129 TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEA 188
T A+ET FCLADPG+A L+PTPYYPGFDRDL+WRTGV++VP+ C SSN F++T ALE
Sbjct: 121 TSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 180
Query: 189 AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248
AY++A++ N+R+KGVL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFS- 239
Query: 249 ESSFVSIAEIIDQDIACN----RNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM 304
SF+S+ E++ +H+VYSLSKD+G PGFRVG IYS +D VV+ A KM
Sbjct: 240 SPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKM 299
Query: 305 SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGL 364
SSFGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAGL
Sbjct: 300 SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGL 359
Query: 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424
F W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT++
Sbjct: 360 FCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLD 419
Query: 425 IALSRITSFM--LKNV 438
+A+ R+ +F+ NV
Sbjct: 420 LAMQRLKAFVGEYYNV 435
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 652 bits (1684), Expect = 0.0
Identities = 297/426 (69%), Positives = 362/426 (84%), Gaps = 4/426 (0%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
+LSK+A HGE+SPYFDGWKA++SDP+HP KNPNGVIQMGLAEN LC +L+EDW+ N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
PK SICS EG+ FK IA FQDYHGLPEFR A+AKFM K RG R+ FDP+R+VM+GGATG
Sbjct: 61 PKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A+ET+ FCLADPGDAFLVP+PYYP F+RDLRWRTGVQL+P+ C+SSN+FK+T +A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
E AQ+SNI++KG+++TNPSNPLGT LD++TLK ++SF N+ NIHLVCDEIYAATVF
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTP 238
Query: 251 SFVSIAEII--DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG 308
FVSIAEI+ + CN++L+HIVYSLSKDMG PGFRVGIIYS+ND VV+CARKMSSFG
Sbjct: 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFG 298
Query: 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWM 368
LVS+QTQ+ +A MLSD++FV+ F+ ESA R+ +RHK FT GL VGI CLK+NAGLF WM
Sbjct: 299 LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWM 358
Query: 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALS 428
DL LL+E T+++EM+LWRVIIN+VKLNVSPGSSF C PGWFRVCFANMDD T++IAL+
Sbjct: 359 DLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALA 418
Query: 429 RITSFM 434
RI F+
Sbjct: 419 RIRRFV 424
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 3e-47
Identities = 82/364 (22%), Positives = 146/364 (40%), Gaps = 27/364 (7%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT-GAHETVAFCLADPGDAFLVPTPYY 153
G+ R+A+A + G + D I ++ GA+ G H + + + D LVP P Y
Sbjct: 135 GIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQY 192
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
P + + G VP + S + + ++ E A+ I ++ +++ NP NP G
Sbjct: 193 PLYSASIALHGGAL-VPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
L E DIV F + + L+ DE+Y ++ F S +I+ +L +
Sbjct: 252 QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVS 311
Query: 274 Y-SLSK-DMGFPGFRVG--IIYSYNDQVVSCARKMSSFGLVSS-QTQHLIATMLSDDQFV 328
Y S+SK G G R G I ++ V K++S L S+ Q L + +++ +
Sbjct: 312 YQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKAS 371
Query: 329 EKFIAESAK-------RIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLL------ 374
++ A +A R KA +++ GI C ++ ++++ +
Sbjct: 372 DESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAA 431
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFH-CPNPGWFRVCFA-NMDDRTMEIALSRITS 432
K + ++ + V PGS F P FR D + +SR T
Sbjct: 432 KAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDK--IPAVISRFTV 489
Query: 433 FMLK 436
F
Sbjct: 490 FHEA 493
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 2e-45
Identities = 63/359 (17%), Positives = 139/359 (38%), Gaps = 47/359 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G R +A + ++++ G + A + LA+PG LVP P +
Sbjct: 97 GFLSSREEIAS---YYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFS 153
Query: 155 GFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
++T + +++ ++ LE ++ + +++ NPS
Sbjct: 154 ------LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE------KTACLIVNNPS 201
Query: 210 NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD--IACNR 267
NP G+ + L+ I++ + + ++ DEIY VF+ + + +A + ++C
Sbjct: 202 NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS-DCKYEPLATLSTDVPILSCG- 259
Query: 268 NLIHIVYSLSKDMGFPGFRVG-IIYSYN-----DQVVSCARKMSSFGL-VSSQTQHLIAT 320
L+K PG+R+G I+ +++ K+S L + Q + +
Sbjct: 260 -------GLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKS 312
Query: 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH-HLLKEQT 378
+L +F + + L+ + G+ ++ + ++L + + E
Sbjct: 313 ILCRTP--GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFE 370
Query: 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437
+ E ++ E ++ P + F PN + RV + + M A SRI F ++
Sbjct: 371 NDVEFTER--LVAEQSVHCLPATCFEYPN--FIRVVIT-VPEVMMLEACSRIQEFCEQH 424
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 72/366 (19%), Positives = 138/366 (37%), Gaps = 53/366 (14%)
Query: 95 GLPEFRNAVAKFM----GKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT 150
G PE R AVA + + T D +V+ G + + D GD LVP
Sbjct: 76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQ 135
Query: 151 PYYPGFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205
P +P + T + C ND++ ++ + + + K +++
Sbjct: 136 PGFP------HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD------KTKLLIV 183
Query: 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF---TKESSFVSIAEIIDQD 262
TNPSNP G+ R+ ++DIV E + L DEIYA VF ++F S+A+
Sbjct: 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTV 243
Query: 263 --IACNRNLIHIVYSLSKDMGFPGFRVGII-----YSYNDQVVSCARKMSSFGL-VSSQT 314
+ +K++ PG+R+G + + + +++ +
Sbjct: 244 PRVILG--------GTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVV 295
Query: 315 QHLIATMLS--DDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH 371
Q + L + +++ + +I E + + G+ ++L +
Sbjct: 296 QAALGEALLNTPQEHLDQIV----AKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID 351
Query: 372 -HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
++ + E ++ E + V PG+ FH PG+ R+ A+ RI
Sbjct: 352 LEKYRDIKTDVEFFEK--LLEEENVQVLPGTIFHA--PGFTRLTTT-RPVEVYREAVERI 406
Query: 431 TSFMLK 436
+F +
Sbjct: 407 KAFCQR 412
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 7e-44
Identities = 76/368 (20%), Positives = 156/368 (42%), Gaps = 31/368 (8%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD----AFLVPT 150
G+ R VA ++ + R + DPD I ++ GA+ T+ L G ++P
Sbjct: 130 GVNCIREDVAAYITR-RDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPI 188
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P YP + + +Q V D N + + + L A ++A++ + K + I NP N
Sbjct: 189 PQYPLYSAVISELDAIQ-VNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGN 246
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
P G R+ ++D++ F E+ + L+ DE+Y V++ + F S +++ + + +
Sbjct: 247 PTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNV 306
Query: 271 HIV--YSLSKD-MGFPGFRVG--IIYSYNDQVVSCARKMSSFGLVSSQT-QHLIATMLSD 324
+ +S SK MG G+R G + + + ++ K+ S L + Q + +++
Sbjct: 307 ELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNP 366
Query: 325 ----DQFVEKFIAESA---KRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLL-- 374
++ E+F E +A++ K +QV GI C ++ + +
Sbjct: 367 PVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKA 426
Query: 375 ----KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW-FRVCFA-NMDDRTMEIALS 428
+ +M ++ E + V PGS F + FR+ ++ ++ L
Sbjct: 427 VEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEK--LKTVLQ 484
Query: 429 RITSFMLK 436
++ F +
Sbjct: 485 KVKDFHIN 492
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 1e-42
Identities = 73/351 (20%), Positives = 138/351 (39%), Gaps = 57/351 (16%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G P F+ +V++ V P++I+ + GATGA+ V + L +PGD + P Y
Sbjct: 64 GSPAFKKSVSQLYTGV-------KPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQ 116
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
D+ G ++ + N + +E L K + I N +NP G
Sbjct: 117 QLY-DIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGA 169
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
+DR L+++V +E +++ DE+Y + SI E+ D+ IA N
Sbjct: 170 VMDRTYLEELVEIASEVGAYILSDEVYRSFSEL---DVPSIIEVYDKGIAVN-------- 218
Query: 275 SLSKDMGFPGFRVG----------IIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD 324
SLSK PG R+G I+ Y D + CA + L+
Sbjct: 219 SLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICA---------GVFDDLVAQLALAH 269
Query: 325 DQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383
Q + + + + E + + + ++ ++ + + + +
Sbjct: 270 YQ---EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPME----DF 322
Query: 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
L ++ E + + PG+ F G+ R+ FA + T+ L +++ F+
Sbjct: 323 CLQ--LLQEHGVLLVPGNRFER--DGYVRLGFAC-EQETLIKGLEKLSQFL 368
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-41
Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 50/356 (14%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLPE R A+ + R N + PD + ++ T A + + L DPGD LVP P YP
Sbjct: 79 GLPELRKAIVEREK--RKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYP 136
Query: 155 GFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNI--RIKGVLITN 207
+ V+ V D++ ++ + I R K + + N
Sbjct: 137 P------YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKK--------ITDRTKAIAVIN 182
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD--IAC 265
P+NP G D++TL++I++ E I ++ DEIY + E +S + I
Sbjct: 183 PNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE--HISPGSLTKDVPVIVM 240
Query: 266 NRNLIHIVYSLSKDMGFPGFRVG-IIYSYNDQVVSCARKM-----SSFGLVSSQTQHLIA 319
N LSK G+R+G + + + +S R+ ++ Q
Sbjct: 241 N--------GLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAI 292
Query: 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQT 378
L+ ++ E K++ ER L+++ GI K +++ ++
Sbjct: 293 AGLTGPM---DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPK----IEVGP 345
Query: 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
++ + +++ + GS F G FR F +E A+ R FM
Sbjct: 346 WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLP-PIEILEEAMDRFEKFM 400
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 7e-40
Identities = 72/362 (19%), Positives = 130/362 (35%), Gaps = 67/362 (18%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC-LADPGDAFLVPTPYY 153
G E R A+A+F+ + F+ D + M+ GA + +D D F+ PY+
Sbjct: 77 GDVETRAAIAEFLN--NTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYF 134
Query: 154 PGFDRDLRWRTGVQL---VPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPS 209
P + + V V + F++ +ALE +GV+I +P+
Sbjct: 135 PEY------KVFVNAAGARLVEVPADTEHFQIDFDALEERINA------HTRGVIINSPN 182
Query: 210 NPLGTFLDRETLKDIVSFINEKN------IHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263
NP GT ET+K + + +K+ I ++ DE Y V+ + + D +
Sbjct: 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI-KVPFVTKYYDNTL 241
Query: 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---------VSSQT 314
+ YS SK + PG R+G + D+V A ++ S
Sbjct: 242 --------VCYSYSKSLSLPGERIGYVLV-PDEVYDKAELYAAVCGAGRALGYVCAPSLF 292
Query: 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
Q +I + + E GL+++G C K + ++++
Sbjct: 293 QKMIVKCQGATGDINAY--------KENRDLLYEGLTRIGYHCFKPDGAFYMFVK----A 340
Query: 375 KEQTYE--AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432
E E A E + + F C PGW R+ + D ++ ++
Sbjct: 341 LEDDSNAFCEKAK------EEDVLIVAADGFGC--PGWVRISYCV-DREMIKHSMPAFEK 391
Query: 433 FM 434
Sbjct: 392 IY 393
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 76/349 (21%), Positives = 130/349 (37%), Gaps = 47/349 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLP R +A+ G + DP R+V++ G++G L D GD + P YP
Sbjct: 69 GLPALRQRIARLYG--EWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYP 126
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ + LR G+ V + N + + G+++ +P+NP GT
Sbjct: 127 SYRQILRA-LGLVPVDLPTAPENRLQPVPADFAGL---------DLAGLMVASPANPTGT 176
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
LD + ++ + + DEIY + E+ V+ E+ D+ N
Sbjct: 177 MLDHAAMGALIEAAQAQGASFISDEIYHGIEY--EAKAVTALELTDECYVIN-------- 226
Query: 275 SLSKDMGFPGFRVGIIYSY---NDQVVSCARKMSS--FGLVSSQTQH--LIATMLSDDQF 327
S SK G+RVG + + V +++ F +Q L A L D
Sbjct: 227 SFSKYFSMTGWRVG----WMVVPEDQVRVVERIAQNMFICAPHASQVAALAA--LDCDAE 280
Query: 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF-LWMDLHHLLKEQTYEAEMALW 386
++ + K L + G + G F ++ D+ L + A
Sbjct: 281 LQANLDV----YKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT-----DDSRAFA 331
Query: 387 RVIINEVKLNVSPGSSF-HCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
I+ + + V+PG F G R +A +E L R+ +FM
Sbjct: 332 AEILEKAGVAVTPGLDFDPERGAGTLRFSYARATAD-IEEGLDRLEAFM 379
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 76/356 (21%), Positives = 133/356 (37%), Gaps = 38/356 (10%)
Query: 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATG-AHETVAFCLADPGDAFL 147
G+P R A++ + + DP+ IV G G AH + D GD L
Sbjct: 72 STSRGIPRLRRAISHWYRDRYD--VQIDPESEAIVTIGSKEGLAH--LMLATLDHGDTIL 127
Query: 148 VPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN 207
VP P YP G Q+ V DF +E + + +++
Sbjct: 128 VPNPSYPIHIYGAVI-AGAQVRSVPLVPGIDFFNELERAIRESIP------KPRMMILGF 180
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIAC 265
PSNP ++ + + +V+ + ++ +V D YA V+ K S + + D +
Sbjct: 181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAV-- 238
Query: 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHL----IATM 321
++LSK G+R+G + N ++VS ++ S+ L IA +
Sbjct: 239 ------EFFTLSKSYNMAGWRIGFMVG-NPELVSALARIKSY-HDYGTFTPLQVAAIAAL 290
Query: 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEA 381
D Q V + A++ +R GL + G A +++W +
Sbjct: 291 EGDQQCVR----DIARQYQQRRDVLVKGLREAGWMVENPKASMYVWAKIPEPYAHLGSL- 345
Query: 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437
E A ++ + K++VSPG F R DR + A+ I + +
Sbjct: 346 EFAKK--LLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQ-AVRGIKAMFRAD 398
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 7e-38
Identities = 69/361 (19%), Positives = 129/361 (35%), Gaps = 44/361 (12%)
Query: 88 AIFQDYH------GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLA 140
+ Q + G+ R A+A+ ++ G D D I ++ GAT A L
Sbjct: 55 HVAQGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITVTAGATEALYAAITALV 112
Query: 141 DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200
GD + P Y + + +G + + F+V + A + R
Sbjct: 113 RNGDEVICFDPSYDSYAPAIA-LSGGIVKRMALQP-PHFRVDWQEFAALLSE------RT 164
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEI 258
+ V++ P NP T + + I I ++ DE+Y F+++ S ++ ++
Sbjct: 165 RLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL 224
Query: 259 IDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--QH 316
++ +A + S K G++VG + + + RK+ + S T Q
Sbjct: 225 RERAVAVS--------SFGKTYHMTGWKVGYCVA-PAPISAEIRKVHQYLTFSVNTPAQL 275
Query: 317 LIATML-SDDQFVEKFIAE-SAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
+A ML ++ + KR L++ + L FL +D +
Sbjct: 276 ALADMLRAEPEHYLALPDFYRQKR-----DILVNALNESRLEILPCEGTYFLLVDYSAV- 329
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG--WFRVCFANMDDRTMEIALSRITS 432
+ E W + E + P S F R+CFA + T+ A R+
Sbjct: 330 -STLDDVEFCQW--LTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKES-TLLAAAERLRQ 385
Query: 433 F 433
Sbjct: 386 L 386
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 6e-37
Identities = 71/376 (18%), Positives = 138/376 (36%), Gaps = 47/376 (12%)
Query: 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDA 145
+ + G P N++ K + + + ++ GA + L + GD
Sbjct: 87 MVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVTVTTGANEGILSCLMGLLNAGDE 144
Query: 146 FLVPTPYYPGFDRDLRWRTG-----VQLVP-----VVCDSSNDFKVTMEALEAAYEKAQE 195
+V P++ + ++ G V + P ++ + E E A
Sbjct: 145 VIVFEPFFDQYIPNIE-LCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI----- 198
Query: 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255
+ K V+I P NP+G RE L + + + N+ ++ DE+Y FT F I
Sbjct: 199 -TSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS--FTRI 255
Query: 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT- 314
A + +I L V S K G+R+G + S N +++S A K + +S +
Sbjct: 256 ATLSP-EIG-QLTL--TVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSP 311
Query: 315 -QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL 373
Q A ++D + + + + K FT ++G+ F+ +D +
Sbjct: 312 LQEACANSINDAL-KIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKV 370
Query: 374 -----------LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCFAN 417
+ + + ++ W +INE+ + P + F+ R
Sbjct: 371 KIPEDYPYPEEILNKGKDFRISHW--LINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK 428
Query: 418 MDDRTMEIALSRITSF 433
DD +E A+ R+
Sbjct: 429 -DDAYLENAVERLKLL 443
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 2e-36
Identities = 51/375 (13%), Positives = 95/375 (25%), Gaps = 58/375 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGA----HETVAFCLADPGDAFLVPT 150
GLPE + ++F I V + G+ + L
Sbjct: 83 GLPELKQEASRFAK--LFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFID 140
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P + R G + K+ + + ++ +NP+N
Sbjct: 141 PGFNLNKLQCRI-LGQKFESFDLFEYRGEKLREKLESYLQTG------QFCSIIYSNPNN 193
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-------SSFVSIAEIIDQDI 263
P + E L+ I + ++ ++ D Y F K+ S+A D I
Sbjct: 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYI 253
Query: 264 ACNRNLIHIVYSLSKDMGFPGFRVG--------IIYSYNDQVVSCARKMSSFGL------ 309
+ S SK + G R+G Y D S R L
Sbjct: 254 --------LALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALY 305
Query: 310 -----VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN--- 361
+ Q +A ML E +S + + G +
Sbjct: 306 ALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGN 365
Query: 362 --AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMD 419
+ L + ++ ++ N R+C + +
Sbjct: 366 EPLADGFYFT-----VGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEA-MRICTSLLP 419
Query: 420 DRTMEIALSRITSFM 434
+ R+
Sbjct: 420 ESQFPDLEKRLQMLN 434
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 70/355 (19%), Positives = 134/355 (37%), Gaps = 41/355 (11%)
Query: 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATG-AHETVAFCLADPGDAFL 147
+HG F+ A+ F + +T D + ++ G G V C+ +PGD L
Sbjct: 82 GAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVCILYGTKNGLVA--VPTCVINPGDYVL 137
Query: 148 VPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN 207
+P P Y + + + VP+ + + +++ + K + +T
Sbjct: 138 LPDPGYTDYLAGVLL-ADGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLIYLTY 189
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES-SFVSIAEIIDQDIACN 266
P+NP G+ +E + ++ + +V D Y A F ++ S ++ D I
Sbjct: 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAI--- 246
Query: 267 RNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHL----IATML 322
+YSLSK GFRVG N ++ +K + + L I +
Sbjct: 247 -----EIYSLSKGYNMSGFRVGFAVG-NKDMIQALKKYQTH-TNAGMFGALQDAAIYALN 299
Query: 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382
D F+E E + R F L++ + + + G+++W++ +
Sbjct: 300 HYDDFLE----EQSNVFKTRRDRFEAMLAKADLPFVHAKGGIYVWLE----TPPGYDSEQ 351
Query: 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437
+ ++ E + V+PG F + R+ A D + E A R+T
Sbjct: 352 FEQF--LVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDE-AAIRLTELAYLY 403
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 71/369 (19%), Positives = 137/369 (37%), Gaps = 51/369 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G P A++ GK+ DP+ I+++ GA G+ L DPGD ++ P+Y
Sbjct: 62 GHPALVKALSCLYGKIYQ--RQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFY 119
Query: 154 PGFDRDLRWRTG-----VQLVPVVCD----SSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
++ +R G + L D +S+D+ LE+ + + + K ++
Sbjct: 120 DCYEPMVR-MAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF------SSKTKAII 172
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQD 262
+ P NPLG R+ L+ I + + + DE+Y V+T + ++ + ++
Sbjct: 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERT 232
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--QHLIAT 320
I S K G+++G ++ + + + T Q +A
Sbjct: 233 ITIG--------SAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAE 283
Query: 321 MLSDDQFV----EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL--- 373
D E + K + + L+ VG+ + + G F+ D+ L
Sbjct: 284 AFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIVPDGGYFIIADVSSLGAD 343
Query: 374 ----LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP-----GWFRVCFANMDDRTME 424
++ Y+ + W + KL P S+F R CF D T++
Sbjct: 344 LSDMNSDEPYDYKFVKW--MTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDS-TLD 400
Query: 425 IALSRITSF 433
A ++
Sbjct: 401 AAEEIFRAW 409
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 72/345 (20%), Positives = 127/345 (36%), Gaps = 43/345 (12%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
GLP R A+A+ +P+ +V++ GAT A + L PGD +V P++
Sbjct: 62 GLPALREALAEE--------FAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFD 113
Query: 155 GFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ D G + V D + F++ + ALE A R + +L+ P NP G
Sbjct: 114 VYLPDAF-LAGAKARLVRLDLTPEGFRLDLSALEKAL------TPRTRALLLNTPMNPTG 166
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
L+ I ++ L+ DE+Y + + ++
Sbjct: 167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGER-PRRLREFAPERTFTVG------- 218
Query: 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--QHLIATMLSDDQFVEKF 331
S K + G+RVG I + + M + S+ T Q +A L + E F
Sbjct: 219 -SAGKRLEATGYRVGWIVG-PKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGF 275
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
+ R GL +G+ FL + A ++
Sbjct: 276 YEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAE---------LPGWDAFR--LVE 324
Query: 392 EVKLNVSPGSSFHCPNPG--WFRVCFANMDDRTMEIALSRITSFM 434
E ++ + P S+F+ +P FR F ++ + +AL R+ +
Sbjct: 325 EARVALIPASAFYLEDPPKDLFRFAFCKTEE-ELHLALERLGRVV 368
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 75/362 (20%), Positives = 139/362 (38%), Gaps = 66/362 (18%)
Query: 95 GLPEFRNAVA-KFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY- 152
G+PE R A+A KF R N ++ P+ +++ G + A + + DPGD +V +PY
Sbjct: 69 GIPELREALAEKFR---RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYW 125
Query: 153 --YPGFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205
YP ++ V+ V V F E + A R K +++
Sbjct: 126 VSYP----EM-----VRFAGGVVVEVETLPEEGFVPDPERVRRAITP------RTKALVV 170
Query: 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII-DQDIA 264
+P+NP G +E L+ + E + +LV DEIY ++ E S + + +
Sbjct: 171 NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSPGRVAPEHTLT 228
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVG-------IIYSYND---QVVSCARKMSSFGLVSSQT 314
N +K G+R+G +I + Q + +
Sbjct: 229 VN--------GAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSP---------DTIA 271
Query: 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
Q L++ + F+ + + R GL+ +G+ ++ + ++ MD +
Sbjct: 272 QWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIA 331
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
++ AE L E + V PG+ F G R+ +A + + AL R +
Sbjct: 332 PDEVRAAERLL------EAGVAVVPGTDFA--AFGHVRLSYAT-SEENLRKALERFARVL 382
Query: 435 LK 436
+
Sbjct: 383 GR 384
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 6e-35
Identities = 74/372 (19%), Positives = 131/372 (35%), Gaps = 49/372 (13%)
Query: 88 AIFQDYH------GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLA 140
AI + G R A+A + G + +DP+ ++++ GAT A L
Sbjct: 50 AIAGGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLVTVGATEAIAAAVLGLV 107
Query: 141 DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIR 199
+PG L+ P+Y + + G V V F + +AL A R
Sbjct: 108 EPGSEVLLIEPFYDSYSPVVA-MAGAHRVTVPLVPDGRGFALDADALRRAVTP------R 160
Query: 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAE 257
+ ++I +P NP G L L I N+ ++ DE+Y VF
Sbjct: 161 TRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDG 220
Query: 258 IIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--Q 315
+ ++ I + S +K G+++G ++++ R + Q
Sbjct: 221 MAERTITIS--------SAAKMFNCTGWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQ 271
Query: 316 HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK 375
+A L + + ++A + R GL+++G S FL D L
Sbjct: 272 PAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSYGTYFLCADPRPL-- 326
Query: 376 EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG-----------WFRVCFANMDDRTME 424
E + +V + P S+F P G R F DD T++
Sbjct: 327 GYDDSTEFCAA--LPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDD-TLD 383
Query: 425 IALSRITSFMLK 436
A+ R++ +
Sbjct: 384 EAIRRLSVLAER 395
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 8e-35
Identities = 70/375 (18%), Positives = 137/375 (36%), Gaps = 54/375 (14%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G P +A F G++ G DP R ++++ G GA T L D GD ++ P++
Sbjct: 68 GYPPLTKILASFFGELLG--QEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFF 125
Query: 154 PGFDRDLRWRTG-----VQLVP-----VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203
++ G V L P SS+++++ L + R K +
Sbjct: 126 DCYEPMTM-MAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF------TSRTKAL 178
Query: 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQ 261
++ P+NPLG RE L+ + S + ++ + DE+Y V+ S S+ + ++
Sbjct: 179 VLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWER 238
Query: 262 DIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--QHLIA 319
+ S K G++VG + D ++ R + + T Q +A
Sbjct: 239 TLTIG--------SAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVA 289
Query: 320 TMLSDDQFV----EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL-- 373
+Q + + + + + L VG+ + FL D+
Sbjct: 290 ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPIIPQGSYFLITDISDFKR 349
Query: 374 -------LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP-----GWFRVCFANMDDR 421
++ Y+ W +I L P S F+ + R CF +
Sbjct: 350 KMPDLPGAVDEPYDRRFVKW--MIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEA- 406
Query: 422 TMEIALSRITSFMLK 436
T++ ++ + ++
Sbjct: 407 TLQAMDEKLRKWKVE 421
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 8e-35
Identities = 69/379 (18%), Positives = 137/379 (36%), Gaps = 51/379 (13%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPG 143
+ G P A++K ++ T +P ++++ GA A D G
Sbjct: 68 PLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLVTVGAYEALYATIQGHVDEG 125
Query: 144 DAFLVPTPYYPGFDRDLRWRTG-----VQLVP---VVCDSSNDFKVTMEALEAAYEKAQE 195
D ++ P++ ++ ++ G + L P SS D+ + LEA +
Sbjct: 126 DEVIIIEPFFDCYEPMVK-AAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALF----- 179
Query: 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFV 253
N + K ++I P NPLG +DR L+ + + + N+ V DE+Y VF
Sbjct: 180 -NEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRIC 238
Query: 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQ 313
++ + ++ I S K G+++G Y + ++ + + + +
Sbjct: 239 TLPGMWERTITIG--------SAGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCA 289
Query: 314 T--QHLIATMLSDD----QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLW 367
T Q IA + + E + + + + L++VG+ G F+
Sbjct: 290 TPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMV 349
Query: 368 MDLHHL--------LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP-----GWFRVC 414
D L + + W + V L P S+F+ + R C
Sbjct: 350 ADWSSLDSKVDLTQETDARKDYRFTKW--MTKSVGLQGIPPSAFYSEPNKHLGEDFVRYC 407
Query: 415 FANMDDRTMEIALSRITSF 433
F D+ ++ A + +
Sbjct: 408 FFKKDE-NLQKAAEILRKW 425
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 8e-35
Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 51/368 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY-- 152
G+ E R A A + R R+ P+ ++++ G + A +A+PGD LV P+
Sbjct: 80 GIWELREAFASYYK--RRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYA 137
Query: 153 -YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
Y F + GV+L+PV F + + LE+ + R KG++++NP NP
Sbjct: 138 NYNAFAK----IAGVKLIPVTRRMEEGFAIP-QNLESFINE------RTKGIVLSNPCNP 186
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII-DQDIACNRNLI 270
G ++ ++ +V + L+ DE+Y+ VF E F S I D+ + +
Sbjct: 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASALSIESDKVVVID---- 240
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL-VSSQTQHL-IATMLSDDQFV 328
S+SK G RVG + + N++++S A K++ L Q + + DD F
Sbjct: 241 ----SVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFF 296
Query: 329 EKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYE--AEMAL 385
+ ER + L + K + ++ + L + E A L
Sbjct: 297 DFVRET----YRERVETVLKKLEEHGLKRFTKPSGAFYITAE----LPVEDAEEFARWML 348
Query: 386 WRVIINEVKLNVSPGSSF---HCPNPGWFRVCFA-NMDDRTMEIALSRITSFMLKNVEAK 441
++ V+P F R+ D + A+ + +
Sbjct: 349 TDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDL--LSRAIDVLMEGL-----KM 401
Query: 442 VPNKKKLC 449
+ + C
Sbjct: 402 FCSSRISC 409
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 69/360 (19%), Positives = 144/360 (40%), Gaps = 56/360 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
GL E R A+A+ + + N I DP I++ GA A G+ L+PTP +
Sbjct: 64 GLLELREAIAEKLK--KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAF 121
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ + G V V ++F++ ++ L+ + + ++I +P NP G
Sbjct: 122 VSYAPAVILAGGKP-VEVPTYEEDEFRLNVDELKKYVTD------KTRALIINSPCNPTG 174
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA---EIIDQDIACNRNLI 270
L ++ L++I F+ E ++ ++ DE+Y ++ ++ SIA + ++ I N
Sbjct: 175 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYD-DARHYSIASLDGMFERTITVN---- 229
Query: 271 HIVYSLSKDMGFPGFRVG-------IIYSYND---QVVSCARKMSSFG----LVSSQTQH 316
SK G+R+G II +C + L ++
Sbjct: 230 ----GFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWK 285
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
+ M +++ R K L+++G+ +K +++ +
Sbjct: 286 AVEEM------RKEY--------DRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRDTGLT 331
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436
+ + ++ E ++ V PGS+F G+ R+ +A + +E A+ R+ + +
Sbjct: 332 ---SKKFSEL--MLKEARVAVVPGSAFGKAGEGYVRISYATAYE-KLEEAMDRMERVLKE 385
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-34
Identities = 60/365 (16%), Positives = 123/365 (33%), Gaps = 48/365 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+ E R+ + M + + R +++ T V + D L+P +
Sbjct: 89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWG 148
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-PSNPLG 213
+ R G + D T ++L A + + + ++I N P+NP G
Sbjct: 149 NYKLVFNTRNGAN-LQTYPIFDKDGHYTTDSLVEALQSYNKDKV----IMILNYPNNPTG 203
Query: 214 TFLDRETLKDIVSFINE-----KNIHLVCDEIY---AATVFTKESSFVSIAEIIDQDIAC 265
+ + IV I + V D+ Y +S F ++ + I
Sbjct: 204 YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAI-- 261
Query: 266 NRNLIHIVYSLSKDMGFPGFRVG-IIYSYND---------QVVSCARKMSSFGLVSSQTQ 315
L + +K+ GFRVG + + +D +V R S G TQ
Sbjct: 262 ---LPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSG--PLPTQ 316
Query: 316 HLIATMLSDDQF----VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLH 371
+ +L +++ +E+ I +R + N+G F+ + +H
Sbjct: 317 SAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH 376
Query: 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431
+ E L + +I++ + V ++ R+ F+ ++ + I
Sbjct: 377 DVDPEA-------LRKHLIDKYSIGVIALNATD------IRIAFSCVEKDDIPHVFDSIA 423
Query: 432 SFMLK 436
+
Sbjct: 424 KAIDD 428
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-33
Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 56/352 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY-- 152
G+ E R +AK +G + PD++V++ GA A L DPGD +V +P
Sbjct: 79 GIYELREGIAKRIG--ERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV 136
Query: 153 -YPGFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
Y + L V S +F+ ++E +E + K VLI
Sbjct: 137 SYI----PQ-----IILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVLIN 181
Query: 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIAC 265
+P+NP G RE L+ +V ++N +++ DE+Y + V+T E +S + ++E D+ +
Sbjct: 182 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYI 241
Query: 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--VSSQTQHLIATMLS 323
N SK G+RVG + S +++V + K+ S +++ Q+ L
Sbjct: 242 N--------GFSKSHSMTGWRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALE 292
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF-LWMDLHHLLKEQTYEAE 382
D ++ ++ K R L ++G+ ++ G F L+ + +
Sbjct: 293 VDN---SYMVQTFKE---RKNFVVERLKKMGVKFVEPE-GAFYLFFKVR--------GDD 337
Query: 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+ ++ E K+ + PGS+F PG+ R+ FA + + AL RI F+
Sbjct: 338 VKFCERLLEEKKVALVPGSAFL--KPGFVRLSFATSIE-RLTEALDRIEDFL 386
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 6e-33
Identities = 65/355 (18%), Positives = 128/355 (36%), Gaps = 50/355 (14%)
Query: 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATG-AHETVAFCLADPGDAFL 147
F A++ G + DP R + + G G AH + L +P D L
Sbjct: 60 CLKSCTLPFLEEAARWYEGRYG--VGLDPRREALALIGSQEGLAH--LLLALTEPEDLLL 115
Query: 148 VPTPYYPGFDRDLRWRTGVQL---VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
+P YP + ++ + D ++A+ + K +L
Sbjct: 116 LPEVAYPSY------FGAARVASLRTFLIPLREDGLADLKAVPEGVWR------EAKVLL 163
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES-SFVSIAEIIDQDI 263
+ P+NP G D ++ + + + L+ D Y V+ E+ S +++ ++ +
Sbjct: 164 LNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVV 223
Query: 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHL----IA 319
++SLSK GFR+G +++ ++ ++ + +Q + +
Sbjct: 224 --------ELFSLSKSYNLAGFRLGFALG-SEEALARLERVKGV-IDFNQYAGVLRMGVE 273
Query: 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTY 379
+ + + V A+ ER L + L A ++LW L E
Sbjct: 274 ALKTPKEVVR----GYARVYRERALGMAEALKG-VLSLLPPRATMYLWGR----LPEGVD 324
Query: 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+ E L V E + ++PG F G+ R+ + +E A RI +
Sbjct: 325 DLEFGLRLV---ERGVALAPGRGFGPGGKGFVRIALVRPLEELLE-AAKRIREAL 375
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 78/350 (22%), Positives = 139/350 (39%), Gaps = 54/350 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+ E R +++ + PD I+++GG++ + D GD L+ P YP
Sbjct: 67 GILELREKISELYK--DKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYP 124
Query: 155 GFDRDLRWRTGVQL---VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
+ + ++ PV CD T+E+LE A + K ++I +PSNP
Sbjct: 125 CY------KNFIRFLGAKPVFCD------FTVESLEEALSD------KTKAIIINSPSNP 166
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT-KESSFVSIAEIIDQDIACNRNLI 270
LG +DRE I F E +++ DEIY V+ K S + E +++ I N
Sbjct: 167 LGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILIN---- 218
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--VSSQTQH--LIATMLSDDQ 326
SK G+R+G + S ND+++ K+ + +Q+ L A ++
Sbjct: 219 ----GFSKLYAMTGWRIGYVIS-NDEIIEAILKLQQNLFISAPTISQYAALKAFEKETER 273
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
+ I E R + + G +++ ++ E
Sbjct: 274 EINSMIKE----FDRRRRLVLKYVKDFGWEVNNPIGAYYVFPNIG--------EDGREFA 321
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436
++ E + ++PG F + R+ +AN + E L RI F+ K
Sbjct: 322 YKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKE-GLERIKEFLNK 370
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-32
Identities = 61/366 (16%), Positives = 110/366 (30%), Gaps = 68/366 (18%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYY 153
G R+ +A + D D ++++ G GA GD + P Y
Sbjct: 79 GDLGIRDLLAPRLA--AFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDY 136
Query: 154 PGFDRDLRWRTGVQL---VPVV------CDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
R L V+ V + + LE A++ + L
Sbjct: 137 FAN-RKL-----VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA------GARVFL 184
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA----EIID 260
+NP+NP G E + I + ++ D++Y+ + S+ + +
Sbjct: 185 FSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA-SYTHLRAEAAVDAE 243
Query: 261 QDIACNRNLIHIVYSLSKDMGFPGFRVG-------IIYSYND---QVVSCARKMSSFGLV 310
+ SK G+R+G II V A
Sbjct: 244 NVVTIM--------GPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRA--------- 286
Query: 311 SSQTQH-LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWM 368
+ +Q L ++E IA L G+ AG +L+
Sbjct: 287 AGYSQAVLRGWFDEAPGWMEDRIAR----HQAIRDELLHVLRGCEGVFARTPQAGSYLFP 342
Query: 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALS 428
L + A +++ + + V+PG+ F R+ F+ D A
Sbjct: 343 RL-----PKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAAR 396
Query: 429 RITSFM 434
RI + +
Sbjct: 397 RIVTLV 402
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 69/364 (18%), Positives = 142/364 (39%), Gaps = 71/364 (19%)
Query: 95 GLPEFRNAVA-KFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPY- 152
G P R A+A K R N + + D I+++ G + + + +PGD ++P P+
Sbjct: 68 GEPRLREAIAQKLQ---RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFW 124
Query: 153 --YPGFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205
YP ++ V+L V + FKV+ E + A + K ++
Sbjct: 125 VSYP----EM-----VKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVF 169
Query: 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA----EIIDQ 261
PSNP G + ++ I E + ++ DEIY ++ ++ +SI E ++
Sbjct: 170 NTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYD-DAQHLSIGAASPEAYER 228
Query: 262 DIACNRNLIHIVYSLSKDMGFPGFRVG-------IIYSYND---QVVSCARKMSSFGLVS 311
+ C+ +K G+RVG ++ + S V
Sbjct: 229 SVVCS--------GFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSN---------VC 271
Query: 312 SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDL 370
+ Q+ + Q + E AER + L+ + G+ C K + +++ +
Sbjct: 272 TFAQYGAIAAYENSQ---DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSI 328
Query: 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+T + + ++++ ++ PG++F R+ +A D T++ + R+
Sbjct: 329 -----AKTGRSSLDFCSELLDQHQVATVPGAAFG--ADDCIRLSYAT-DLDTIKRGMERL 380
Query: 431 TSFM 434
F+
Sbjct: 381 EKFL 384
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-30
Identities = 71/356 (19%), Positives = 116/356 (32%), Gaps = 49/356 (13%)
Query: 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVA--FCLADPGDAFLV 148
GLP R +++ + D I +S GA + P +
Sbjct: 72 GPDFGLPALRQKLSEDFYRGF-----VDAKEIFISDGAK---VDLFRLLSFFGPNQTVAI 123
Query: 149 PTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
P YP + R +++ + C N F I + + +P
Sbjct: 124 QDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPEDT-----------HIDILCLCSP 172
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID-QDIACNR 267
+NP GT L+++ L+ IV + E I ++ D Y+ + S SI EI D + A
Sbjct: 173 NNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD-PSLPKSIFEIPDARFCA--- 228
Query: 268 NLIHIVYSLSKDMGFPGFRVG-------IIYSYNDQVVSCARKMSS--FGLVSSQTQHLI 318
I I S SK +GF G R+G + Y+ V+ + S F S Q
Sbjct: 229 --IEI-NSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAG 285
Query: 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQT 378
LS E+ E L G +LW+ +
Sbjct: 286 VAGLSILP-----QLEAIHYYRENSDLLRKALLATGFEVFGGEHAPYLWVK----PTQAN 336
Query: 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
L+ + E + ++PG F G+ R + + A R+
Sbjct: 337 ISDR-DLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILA-ACERLQMAP 390
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 3e-30
Identities = 77/394 (19%), Positives = 128/394 (32%), Gaps = 62/394 (15%)
Query: 72 KASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA-TG 130
A +A GL +G + + G R AVA G D I +S G+
Sbjct: 89 DAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGR----AADEIFISDGSKCD 144
Query: 131 -AHETVAFCLADPGDAFLVPTPYYP---------GFDRDLRWRTGVQLVPVVCDSSNDFK 180
A + F V P YP G D + +VC+ N F
Sbjct: 145 IARIQMMF---GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFF 201
Query: 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240
+ + R + +P+NP G R L ++V+F + LV D
Sbjct: 202 PDLSKAK-----------RTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAA 250
Query: 241 YAATVFTKESSFVSIAEIID-QDIACNRNLIHIVYSLSKDMGFPGFRVG-------IIYS 292
YA + +I EI ++A I S SK GF G R+G + Y+
Sbjct: 251 YALYISN-PDCPKTIYEIPGADEVA-----IET-CSFSKYAGFTGVRLGWTVVPKALKYA 303
Query: 293 YNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGL 350
+ V + ++ + F S+ Q L + K + K E +
Sbjct: 304 NGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQILKTTF 361
Query: 351 SQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV---IINEVKLNVSPGSSFHCPN 407
+++G + ++W+ W V I+ + +PGS +
Sbjct: 362 TEMGFSVYGGDDAPYIWVGF----------PGKPSWDVFAEILERCNIVTTPGSGYGPAG 411
Query: 408 PGWFRVCFANMDDRTMEIALSRITSFMLKNVEAK 441
G+ R + +E A+ R K +
Sbjct: 412 EGFVRASAFGSRENILE-AVRRFKEAYGKRNASH 444
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 48/351 (13%), Positives = 104/351 (29%), Gaps = 39/351 (11%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA-TG-AHETVAFCLADPGDAFLVPT 150
R A F + I + ++ + G+ + P
Sbjct: 58 SAFEESLRAAQRGFFKRRFK--IELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPN 115
Query: 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
P+Y ++ ++ + + + NDF ++ E + V++ +P+N
Sbjct: 116 PFYQIYEGAAKF-IKAKSLLMPLTKENDFTPSLNEKELQ---------EVDLVILNSPNN 165
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
P G L E L V + + L+ DE Y+ S+ E +
Sbjct: 166 PTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPP--PSLLEACMLAGNEAFKNV 223
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG--LVSSQTQHLIATMLSDDQFV 328
+++SLSK PG R G I + +++ + ++ ++ Q DD+
Sbjct: 224 LVIHSLSKRSSAPGLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHA 282
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
E A K ++++ + + L++
Sbjct: 283 E----FFRNIYANNLKLARKIFKNTL----IYPYSFYVYLPV-----QNGENFAKTLYQ- 328
Query: 389 IINEVKLNVSPGSSFHCPNPG--WFRVCFANMDDRTMEIALSRITSFMLKN 437
+ P G + R+ + L I ++ +
Sbjct: 329 ---NEGIITLPALYLGRNRIGADYVRLALVYDTPLLEK-PLEIIETYRENH 375
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-29
Identities = 66/370 (17%), Positives = 115/370 (31%), Gaps = 63/370 (17%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTP 151
G R A+AK G D + +S GA + V P
Sbjct: 97 EQGAKPLRAAIAKTFYGGLG----IGDDDVFVSDGAKCD--ISRLQVMFGSNVTIAVQDP 150
Query: 152 YYP-----------GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200
YP + + + + C N F + + R
Sbjct: 151 SYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVG-----------RT 199
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260
+ +P+NP G RE L +V F + +V D YA + + + SI EI
Sbjct: 200 DIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMS--DDNPRSIFEIPG 257
Query: 261 -QDIACNRNLIHIVYSLSKDMGFPGFRVG-------IIYSYNDQVVSCARKMSS--FGLV 310
+++A + S S GF G R+G ++YS V ++ F
Sbjct: 258 AEEVA-----MET-ASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGA 311
Query: 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
S+ +Q L+ + + + + E + +G ++W+
Sbjct: 312 SNISQAGALACLTPEG--LEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAPYVWVHF 369
Query: 371 HHLLKEQTYEAEMALWRV---IINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIAL 427
+ W V I+ + + +PGS F G+ RV + +E A
Sbjct: 370 ----------PNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENILE-AC 418
Query: 428 SRITSFMLKN 437
R +
Sbjct: 419 RRFKQLYKHH 428
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 72/421 (17%), Positives = 132/421 (31%), Gaps = 94/421 (22%)
Query: 95 GLPEFRNA-VAKFMGKVRGNRITFDPD---RIVMSGGATGAHETVAFCLA-----DPGDA 145
+ V +++ +R P + G T A + L GD
Sbjct: 139 RMLNISEKIVRQYI--IREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDK 196
Query: 146 FLVPTPY---YPGFDRDLRWRTGVQLVPVV--CDSSNDFKVTMEALEAAYEKAQESNIRI 200
+ P Y ++ L V D S +++ L+ + I
Sbjct: 197 VAIGMPVFTPYI----EIPELAQYALEEVAINADPSLNWQYPDSELDKLKDP------AI 246
Query: 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHL--VCDEIYAATVFTKESSFVSIAEI 258
K NPSNP +D+ +L+ + + + E L + D++Y F S+ I
Sbjct: 247 KIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD----DFQSLFAI 302
Query: 259 IDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA-RKMSSFGLVSSQTQHL 317
C N + +VYS SK G G+R+G++ ++ V A K+ V+ ++
Sbjct: 303 ------CPENTL-LVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYR 355
Query: 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV------------------------ 353
+ ++ +A H A QV
Sbjct: 356 SLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQL 415
Query: 354 ------------GIGCLKS-NAGLF-LWMDLHHLLKEQTYEAEMALWRVII--------- 390
G+ L+ NA + +DL + + Y + W V
Sbjct: 416 IRRRETTLYRELGMPPLRDENAVDYYTLIDLQDVT-AKLYGEAFSEWAVKQSSTGDMLFR 474
Query: 391 --NEVKLNVSPGSSFHCPNPGWFRVCFANMDD---RTMEIALSRITSFMLKNVEAKVPNK 445
+E + + PG F R AN+++ + AL ++ + + N
Sbjct: 475 IADETGIVLLPGRGFGSNR-PSGRASLANLNEYEYAAIGRALRKMADELYAEYSGQAQNL 533
Query: 446 K 446
K
Sbjct: 534 K 534
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 65/363 (17%), Positives = 118/363 (32%), Gaps = 51/363 (14%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD---AFLVPTP 151
G NA+A + + G +P I ++ G+ A + A V P
Sbjct: 76 GKTALLNALAVLLRETLG--WDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFP 133
Query: 152 YYPGFDRDLRWRTGVQL-----VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
P + L + FK ++ + + ++
Sbjct: 134 LAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLHIGE------ETGMICVS 187
Query: 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACN 266
P+NP G + E L + N+ NI LV D Y V F + +
Sbjct: 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYG--VPFPGIIFSEARPLWNP----- 240
Query: 267 RNLIHIVY--SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV--SSQTQHLIATML 322
+I+ SLSK +G PG R GII + ND+ ++ M+ + ++ M+
Sbjct: 241 ----NIILCMSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMI 294
Query: 323 SD---DQFVEKFIAES-AKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQT 378
+ E I +R+ + LS+ K +FLW+ K+
Sbjct: 295 KRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLW----FKDLP 350
Query: 379 YEAEMALWRVIINEVKLNVSPGSSFHC-------PNPGWFRVCFANMDDRTMEIALSRIT 431
E+ R+ + + PG F R+ + D+ +E + +
Sbjct: 351 ITTELLYQRLK--ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDK-IEAGVKILA 407
Query: 432 SFM 434
+
Sbjct: 408 EEI 410
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-28
Identities = 49/373 (13%), Positives = 99/373 (26%), Gaps = 84/373 (22%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--------DPGDAF 146
E + + V GN IV G T + L+ P
Sbjct: 101 ISFELEKTIKELHEVV-GNAAA-KDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKV 158
Query: 147 LVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
+ P+YP F + + ++T
Sbjct: 159 VAHAPFYPVF---------REQTKYFDKKGYVWAGNAANYVNVSNP------EQYIEMVT 203
Query: 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACN 266
+P+NP G ++ K + D +Y + I D+DI
Sbjct: 204 SPNNPEGL-----LRHAVI-----KGCKSIYDMVYYWP------HYTPIKYKADEDI--- 244
Query: 267 RNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--VSSQTQH-------- 316
+++++SK G G R G ++ V + + +TQ
Sbjct: 245 -----LLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE 299
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG---------------IGCLKSN 361
++A + + + K++ ER T L Q ++
Sbjct: 300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP 359
Query: 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR 421
+ + W+ + E ++N G F + + R+ D
Sbjct: 360 SPSYAWV--------KCEWEEDKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIKTQD- 409
Query: 422 TMEIALSRITSFM 434
+ + + +
Sbjct: 410 DFDQLMYYLKDMV 422
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 6e-28
Identities = 66/384 (17%), Positives = 119/384 (30%), Gaps = 60/384 (15%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGA---------------HETVAFCL 139
G F +A+ F + + I ++ G+ A H
Sbjct: 84 GDSAFIDALVGFFNRHYD--WNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESK 141
Query: 140 ADPGDAFLVPTPYYPGFDRDLRWR-----TGVQLVPVVCDSSN---DFKVTMEALEAAYE 191
+ L TP Y G+ + V D ++V EALE
Sbjct: 142 SVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA 201
Query: 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251
+ RI + + P+NP G L E + + +I L+ D Y S
Sbjct: 202 LKEG---RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS 258
Query: 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLV- 310
+ + I C SLSK +G PG R GII + + +V+ M++ +
Sbjct: 259 -DAHLNWDNNTILCF--------SLSK-IGLPGMRTGIIVA-DAKVIEAVSAMNAVVNLA 307
Query: 311 -SSQTQHLIATMLSDDQF----VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365
+ + ++++D+ + K+ K L + K +F
Sbjct: 308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF 367
Query: 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--------PNPGWFRVCFAN 417
LW+ K+ R+ + P F R+ A
Sbjct: 368 LWLW----FKDLPISTLDLYERLK--AKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIA- 420
Query: 418 MDDRTMEIALSRITSFMLKNVEAK 441
D++T+ + I + + + K
Sbjct: 421 ADEQTLIDGIKVIGEVVRELYDNK 444
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 68/366 (18%), Positives = 127/366 (34%), Gaps = 59/366 (16%)
Query: 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS--GGATG-AHETVAFCLADP-----GD 144
GLPE R A A ++ + R + +T D D ++ G + +P
Sbjct: 65 TAGLPELRQACANWLKR-RYDGLTVDADNEILPVLGSREALFS--FVQTVLNPVSDGIKP 121
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEAL-EAAYEKAQESNIRIKGV 203
A + P P+Y ++ G ++ C + F ++ E +++ + +
Sbjct: 122 AIVSPNPFYQIYEGATLL-GGGEIHFANCPA-PSFNPDWRSISEEVWKRTK--------L 171
Query: 204 LITN-PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262
+ P+NP G+ LD + K++ ++ + DE Y+ F + + Q
Sbjct: 172 VFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKP-LGCLQAAAQL 230
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQ--------T 314
+ L+ + SLSK PG R G V A + +F L +
Sbjct: 231 GRSRQKLL-MFTSLSKRSNVPGLRSGF-------VAGDAELLKNFLLYRTYHGSAMSIPV 282
Query: 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL 374
Q D+Q V ++ + E+ + L QV +A ++W+ +
Sbjct: 283 QRASIAAWDDEQHVI----DNRRLYQEKFERVIPILQQV-FDVKLPDASFYIWLKVP--- 334
Query: 375 KEQTYEAEMALWRVIINEVKLNVSPGSSFHCP----NPG--WFRVCFANMDDRTMEIALS 428
LW+ + + V PG NPG + R+ ++ A
Sbjct: 335 DGDDLAFARNLWQ----KAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVK-AAE 389
Query: 429 RITSFM 434
I S
Sbjct: 390 DIVSLY 395
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 3e-26
Identities = 55/300 (18%), Positives = 101/300 (33%), Gaps = 34/300 (11%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLA-----DPGDAFLV 148
L + F+ ++ + + G T A LA GD +
Sbjct: 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAI 198
Query: 149 PTPYYPGFDRDLRWRTGVQLVPVVCDSS--NDFKVTMEALEAAYEKAQESNIRIKGVLIT 206
P + + + +LV V S ND+++ +E + IK +++
Sbjct: 199 NEPIFTPYL-RIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP------SIKALIVV 251
Query: 207 NPSNPLGTFLDRETLKDIVSFINE-KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIAC 265
NP+NP D L I + + + ++ DE+Y A V +F SI +
Sbjct: 252 NPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP----NFKSIYSV------V 301
Query: 266 NRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC--ARKMSSFGLVSSQTQHLIATMLS 323
N + +VYS SK G G+R+G+I V A + +
Sbjct: 302 PYNTM-LVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPD 360
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383
+F+++ A+S + I H A Q+ + + + + Y
Sbjct: 361 KMKFIDRLCADS-RSIGLYHTAGLSTPQQIMEALFS----MTHLLTSTNGGSDDPYIDIA 415
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 63/346 (18%), Positives = 129/346 (37%), Gaps = 34/346 (9%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G+PE R +A F+ K + P+ IV++ G TGA + + L DPGD + P Y
Sbjct: 76 GIPELREELAAFLKKYDH--LEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYI 133
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLG 213
G ++ V D + + ++ LE ++ + ++K + I NP+G
Sbjct: 134 NTLLAFEQL-GAKIEGVPVD---NDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMG 189
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
+ E K ++ ++ ++ ++ D Y + V + + ++ ++
Sbjct: 190 VTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG-DIVPLKALDNEG--------RVI 240
Query: 274 Y--SLSKDMGFPGFRVGIIY---SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328
+LSK + GFR+G I +V+ K + +Q++ L F
Sbjct: 241 VAGTLSKVL-GTGFRIGWIIAEGEILKKVLMQ--KQPIDFCAPAISQYIALEYLKRGYFE 297
Query: 329 EKFIAESAKRIAERHKAFTWGLSQV--GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
+ + + E+ L K AG+F+ L ++
Sbjct: 298 KYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGAD------GISFA 351
Query: 387 RVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRI 430
++ + V PG F+ R+ F+ + I + ++
Sbjct: 352 NELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKL 397
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 68/445 (15%), Positives = 138/445 (31%), Gaps = 98/445 (22%)
Query: 29 DGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASIC--SAEGLNEFKG 86
+ + E + V+ + + E W + ++ + ++ F
Sbjct: 5 ENSRKPEKISNKNIPMSDFVVNLDHGDPTA---YEEYWRKMGDRCTVTIRGCDLMSYFSD 61
Query: 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD-- 144
+ + PE +A+ G V GN T + IV+ G+T + L+
Sbjct: 62 MTNLCWFL-EPELEDAIKDLHG-VVGNAAT-EDRYIVVGTGSTQLCQAAVHALSSLARSQ 118
Query: 145 --AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202
+ + P+Y + S +K +A +
Sbjct: 119 PVSVVAAAPFYSTY----------VEETTYVRS-GMYKWEGDAWGFDKKGP-------YI 160
Query: 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQD 262
L+T+P+NP GT + +V+ ++ ++ D Y + I D D
Sbjct: 161 ELVTSPNNPDGT-----IRETVVNRPDDDEAKVIHDFAYY------WPHYTPITRRQDHD 209
Query: 263 IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK---MSSFGLVSSQTQHLIA 319
I ++++ SK G G R+G + +V + ++S G VS ++Q A
Sbjct: 210 I--------MLFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIG-VSKESQVRTA 260
Query: 320 TMLS-------DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS------------ 360
+L+ + E F + + R + + + L
Sbjct: 261 KILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKS 320
Query: 361 --NAGLFLWM------DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFR 412
+ F W+ DL L+ +V+ G + R
Sbjct: 321 LESYPAFAWLGTKEETDLVSELRRH---------KVM-------SRAGERCGS-DKKHVR 363
Query: 413 VCFANMDDRTMEIALSRITSFMLKN 437
V + +D + L R+ + L
Sbjct: 364 VSMLSRED-VFNVFLERLANMKLIK 387
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 57/330 (17%), Positives = 117/330 (35%), Gaps = 64/330 (19%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
A+A+ I+ G T + TVA L ++ TP + +
Sbjct: 62 FHLHQALARHHQ--------VPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEY 111
Query: 157 DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL 216
R L ++G ++ ++ +++T LEA + + P+NP G
Sbjct: 112 GRALA-QSGCEIRRWSLREADGWQLTDAILEALTPDL-------DCLFLCTPNNPTGLLP 163
Query: 217 DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276
+R L+ I NI+L+ DE + + E+ F+ + N ++ ++ SL
Sbjct: 164 ERPLLQAIADRCKSLNINLILDEAFIDFI-PHETGFIP-------ALKDNPHIW-VLRSL 214
Query: 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---VSSQTQHLIATMLSDDQFVEKFIA 333
+K PG R+G + + +D + +M + V++ L D + +
Sbjct: 215 TKFYAIPGLRLGYLVNSDDAAM---ARMRRQQMPWSVNALAALAGEVALQDSAWQQA--- 268
Query: 334 ESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDL--------HHLLKEQTYEAEMA 384
+ + E F L Q+ + A +L + LL +
Sbjct: 269 -TWHWLREEGARFYQALCQLPLLTVYPGRAN-YLLLRCEREDIDLQRRLLTQ-------- 318
Query: 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVC 414
R++I +++ + ++RV
Sbjct: 319 --RILI-------RSCANYPGLDSRYYRVA 339
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 5e-22
Identities = 66/353 (18%), Positives = 134/353 (37%), Gaps = 50/353 (14%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G R + K++GK R + I+++ G+ A + + +PGD +V P Y
Sbjct: 119 GFTPLRETLMKWLGK-RY--GISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYL 175
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLG 213
+ + Q + + D D + +E LE ++ + ++K V + NP G
Sbjct: 176 AALQAFNFY-EPQYIQIPLD---DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAG 231
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
++ + K ++ +E + +V D+ Y ++ I + ++ ++
Sbjct: 232 VTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN-PEKKIKALDNEG--------RVI 282
Query: 274 Y--SLSKDMGFPGFRVGIIY---SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328
Y + SK + PGFR+G + ++ K S+ + Q + +
Sbjct: 283 YLGTFSKIL-APGFRIGWMVGDPGIIRKMEIA--KQSTDLCTNVFGQVVAWRYVDGGYL- 338
Query: 329 EKFIAESAKRIAERHKAFTWGLSQ---VGIGCLKSNAGLFLW------MDLHHLLKEQTY 379
EK I E K R A L + G+ K G+F+W +D +L+
Sbjct: 339 EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLER--- 395
Query: 380 EAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRI 430
A+ + + PG +F+ R+ F +D+ + + R+
Sbjct: 396 ----AI------KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRL 438
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 4e-21
Identities = 62/357 (17%), Positives = 121/357 (33%), Gaps = 52/357 (14%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G P + + K + ++ G D D ++ + G+ A + + D ++ P Y
Sbjct: 86 GDPVLKQQILKLLERMYGITGL-DEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYL 144
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI-TNPS--NP 211
G R V V + D + + LE + ++ + I + NP
Sbjct: 145 GAINAFRQY-LANFVVVPLE---DDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNP 200
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQDIACNRNL 269
G E K +V + ++ +V D+ Y A + E+ I +
Sbjct: 201 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGG--------PERV 252
Query: 270 IHIVYSLSKDMGFPGFRVGIIY---SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQ 326
+ + + SK + PG R+G++ + ++V K S+ + T L A L
Sbjct: 253 VLLN-TFSKVL-APGLRIGMVAGSKEFIRKIVQA--KQSADLCSPAITHRLAARYLERYD 308
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQ-----VGIGCLKSNAGLFLW------MDLHHLLK 375
+ + + + + L + G+ +KS GLF+W D + +
Sbjct: 309 L-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFE 367
Query: 376 EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG--WFRVCFANMDDRTMEIALSRI 430
A K+ PG F + R+ F D + + R+
Sbjct: 368 Y-------AK------RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRL 411
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 8e-21
Identities = 57/321 (17%), Positives = 111/321 (34%), Gaps = 57/321 (17%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD 157
R +AK D + I+++ G T A +A G L+ P + ++
Sbjct: 54 TLRQMLAKRNS--------VDNNAILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYE 103
Query: 158 RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD 217
R ++ +A SN+ + NP+NP G L
Sbjct: 104 DACR-MYEHEVCFY-------------PSNEDIGEADFSNMDF--CWLCNPNNPDGRLLQ 147
Query: 218 RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277
R + +++ + + V D+ Y + FT E DI +NL+ +VYS S
Sbjct: 148 RTEILRLLN--DHPDTTFVLDQSYVS--FTTEEVIRP------ADIKGRKNLV-MVYSFS 196
Query: 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---VSSQTQHLIATMLSDDQFVEKFIAE 334
G PG R+G I + D +++++F V++ +L
Sbjct: 197 HAYGIPGLRIGYIVANKD----FMKRVAAFSTPWAVNALAIEAAKFILIHPAQFTL---- 248
Query: 335 SAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393
++ F L+++ G+ S F + L + + + + ++I
Sbjct: 249 PIRKWQRNTVDFITALNRLDGVEVHPSGTT-FFLLRLKKGTAAELKKYMLEEYNMLI--- 304
Query: 394 KLNVSPGSSFHCPNPGWFRVC 414
S+F + + R+
Sbjct: 305 ----RDASNFRGLDESYVRIT 321
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 59/325 (18%), Positives = 122/325 (37%), Gaps = 55/325 (16%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
++ ++ IV+ GA+ E + L+ P Y +
Sbjct: 64 RRLNKSIENYLK--------LKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEY 111
Query: 157 DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL 216
+ + + + GV +V D + + E + + + + V+I NP+NP G +
Sbjct: 112 EINAK-KHGVSVVFSYLD--ENMCIDYEDIISKIDD-------VDSVIIGNPNNPNGGLI 161
Query: 217 DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276
++E ++ EK ++ DE + FT + S + EI + L I+ ++
Sbjct: 162 NKEKFIHVLKLAEEKKKTIIIDEAFIE--FTGDPSSSFVGEIKNYS-----CLF-IIRAM 213
Query: 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---VSSQTQHLIATMLSDDQFVEKFIA 333
+K PG R G + N ++ A K+ + ++ + L D +I
Sbjct: 214 TKFFAMPGIRFGYGITNNKEI---AAKIKAKQNPWNINCFAEMAAINCLKD----TNYIE 266
Query: 334 ESAKRIAERHKAFTWGLSQVGI--GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWR--VI 389
ES I + K F L+++G +A F+ L ++ E+ Y+ +L + ++
Sbjct: 267 ESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENISGEKLYD---SLLKEDIV 322
Query: 390 INEVKLNVSPGSSFHCPNPGWFRVC 414
I +F + + R
Sbjct: 323 I-------RRCCNFIGLDDSFVRFA 340
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 7e-20
Identities = 51/372 (13%), Positives = 116/372 (31%), Gaps = 49/372 (13%)
Query: 86 GIAIFQDYH----GLPEFRNAVAKFMGK-----VRGNRITFDPDRIVMSGGATGAHETVA 136
G+ + Y GLP R A ++ + N + + +V++
Sbjct: 59 GLDLRN-YPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGST 117
Query: 137 FCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196
+V P Y L+ G +L+ V ++A+ E+ +
Sbjct: 118 GPWLSQTPKMIVTVPGYDRHFLLLQTL-GFELLTVDMQ---SDGPDVDAV----ERLAGT 169
Query: 197 NIRIKGV-LITNPSNPLGTFLDRETLKDIVS-FINEKNIHLVCDEIYAATVFTKESSFVS 254
+ +KG+ + SNP G + E + + + + D+ Y +E
Sbjct: 170 DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEE-DRAE 228
Query: 255 IAEIIDQDIACNRNLIHIVY--SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSS 312
+ S SK + F G +G + S D + ++ + + + +
Sbjct: 229 PVNFVVLARDAG-YPDRAFVFASTSK-ITFAGAGLGFVASSEDNIRWLSKYLGAQSIGPN 286
Query: 313 Q-TQHLIATMLSD-DQFVEKFIAESAKRIAER--------HKAFTWGLSQVGIGCLKSNA 362
+ Q L++ +E + + A IA + G
Sbjct: 287 KVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYA--TWTLPKG 344
Query: 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC----PNPGWFRVCFANM 418
G F+ +D + ++ + A ++++P + + P+ R+
Sbjct: 345 GYFISLDTAEPVADRVVKL--AE------AAGVSLTPAGATYPAGQDPHNRNLRLAPTRP 396
Query: 419 DDRTMEIALSRI 430
+ A+ +
Sbjct: 397 PVEEVRTAMQVV 408
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 56/393 (14%), Positives = 120/393 (30%), Gaps = 63/393 (16%)
Query: 70 NPKASICSAEGLNEFKGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126
+ ++ G + Y G+ + R A +G ++++
Sbjct: 52 DELLALPGKGDFKAADGTDVRN-YGGLDGIVDIRQIWADLLGV--------PVEQVLAGD 102
Query: 127 GA--------------TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172
+ G +++V + ++ P P Y G +++ V
Sbjct: 103 ASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF-GFEMISVP 161
Query: 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLGTFLDRETLKDIVS-FINE 230
+ M+A+E + ++KG+ ++ SNP G + + K + +
Sbjct: 162 MNEDG---PDMDAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAA 213
Query: 231 KNIHLVCDEIYAATVFTKES-SFVSIAEIIDQDIACNRNLIHIVY--SLSKDMGFPGFRV 287
+ +V D YA T E + I + + NR S SK + G V
Sbjct: 214 PDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNR----FWAFTSTSK-ITLAGAGV 268
Query: 288 GIIYSYNDQVVSCARKMSSFGLVSSQ-TQHLIATMLSDDQFVEKFIAESAKRIAERHKAF 346
+ + G+ ++ Q A D + V + + A +A +
Sbjct: 269 SFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKV 328
Query: 347 TWGLSQ-----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGS 401
L G F+ +D+ + E A E + ++
Sbjct: 329 LEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAEL--AK------EAGIALTGAG 380
Query: 402 SFHC----PNPGWFRVCFANMDDRTMEIALSRI 430
S + P R+ + +E+A+ +
Sbjct: 381 SSYPLRQDPENKNLRLAPSLPPVEELEVAMDGV 413
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 63/371 (16%), Positives = 134/371 (36%), Gaps = 67/371 (18%)
Query: 95 GLPEFRNAVAKFMGKVRG-----NRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP 149
G+PE + + + K+ + + ++ G+ V + +PGD L+
Sbjct: 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLD 138
Query: 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG-----VL 204
P Y G + L G ++ V D + + ++L + + + + L
Sbjct: 139 EPAYSGTLQSLHPL-GCNIINVASD---ESGIVPDSLRDILSRWKPEDAKNPQKNTPKFL 194
Query: 205 ITNPS--NPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIID 260
T P+ NP G L E K+I + + ++ D+ Y F K +F+S +D
Sbjct: 195 YTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLS----MD 250
Query: 261 QDIACNRNLIHIVY--SLSKDMGFPGFRVGIIYSYNDQVVS-CAR-KMSSFGLVSSQTQH 316
D ++ S SK + G R+G + ++ S S+ Q
Sbjct: 251 VD-------GRVIRADSFSKIIS-SGLRIGFLTG-PKPLIERVILHIQVSTLHPSTFNQL 301
Query: 317 LIATMLSD------DQFVEKFIAESAKR------IAERH--KAFTWGLSQVGIGCLKSNA 362
+I+ +L + V++ I + + A++ W A
Sbjct: 302 MISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEW---------HVPAA 352
Query: 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG---WFRVCFANMD 419
G+FLW+ + + + + + + + PG++F+ + + R F++
Sbjct: 353 GMFLWIKVK-----GINDVKELIEEKAVKM-GVLMLPGNAFYVDSSAPSPYLRASFSSAS 406
Query: 420 DRTMEIALSRI 430
M++A +
Sbjct: 407 PEQMDVAFQVL 417
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 65/355 (18%), Positives = 124/355 (34%), Gaps = 62/355 (17%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G R VA+++G P+ ++++ G+ A + V D G L+ P Y
Sbjct: 75 GYAPLRAFVAEWIGV--------RPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM 126
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLG 213
G + R G + + V + ++ALE ++ R + + LI + NP G
Sbjct: 127 GAIQAFR-LQGPRFLTVPAG---EEGPDLDALEEVLKRE-----RPRFLYLIPSFQNPTG 177
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQDIACNRNLIH 271
K ++ + E+ + +V D+ Y F + S +A
Sbjct: 178 GLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR--------EAGYPG 229
Query: 272 IVY--SLSKDMGFPGFRVGIIY---SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQ 326
++Y S SK + PG RV ++V K + Q L+ +L +
Sbjct: 230 VIYLGSFSKVL-SPGLRVAFAVAHPEALQKLVQA--KQGADLHTPMLNQMLVHELLKEG- 285
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQ---VGIGCLKSNAGLFLW------MDLHHLLKEQ 377
+ + + E+ +A L + + + G+F+W + L +
Sbjct: 286 -FSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRR- 343
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRI 430
AL E + PG F R+ +A +D + + R+
Sbjct: 344 ------AL------EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 9e-18
Identities = 59/354 (16%), Positives = 116/354 (32%), Gaps = 56/354 (15%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
E+ AVA + +R D V + G A + PGD LV P Y F
Sbjct: 65 AEYYKAVADWEEI-E-HRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMF 122
Query: 157 DRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ G +++ ++ ++ + + V LE EK ++R+ ++ NP NP+G
Sbjct: 123 YSVIE-GNGRRVISSDLIYEN-SKYSVNWADLE---EKLATPSVRM--MVFCNPHNPIGY 175
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
E +K I + + L+ DEI+ V + +D D ++ +
Sbjct: 176 AWSEEEVKRIAELCAKHQVLLISDEIHGDLVL-TDEDITPAFT-VDWDAK--NWVV-SLI 230
Query: 275 SLSKDMGFPGFRVGIIYSYN----DQVVSCARKM-----SSFGLVSSQT---------QH 316
S SK N + + + ++ +
Sbjct: 231 SPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRE 290
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
L + + + +F+A+ + L SNA W+D+ L
Sbjct: 291 LKQVLRDNFAYAREFLAKEVP----------------EVKVLDSNASYLAWVDISALGMN 334
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ + + L +S G+ + + R+ A + + R+
Sbjct: 335 AE-----DFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRL 382
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-17
Identities = 70/357 (19%), Positives = 127/357 (35%), Gaps = 62/357 (17%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
E AV + +FD + IV G A G+A L+ +P YP F
Sbjct: 69 DELLQAVLDWEKS-EHQ-YSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPF 126
Query: 157 DRDLRWRTGVQLVPV-VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF 215
R +R +LV + + + F++ E LE E+++++ L+ NP NP G
Sbjct: 127 ARSVR-LNNRKLVSNSLKEENGLFQIDFEQLE---NDIVENDVKL--YLLCNPHNPGGRV 180
Query: 216 LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275
+RE L+ I + ++ LV DEI+ VS + D + ++ S
Sbjct: 181 WEREVLEQIGHLCQKHHVILVSDEIHQDLTL-FGHEHVSFNT-VSPDFK--DFAL-VLSS 235
Query: 276 LSKDMGFPGFRVGIIYSYNDQVVSCARK-------------MSSFGLVSSQT-------- 314
+K G + N + +SS G ++++T
Sbjct: 236 ATKTFNIAGTKNSYAIIENPTL----CAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPW 291
Query: 315 -QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL 373
L A + + QF ++ A+ A + +K +W+D
Sbjct: 292 LVALKAVLEENIQFAVEYFAQEAP----------------RLKVMKPQGTYLIWLDFSDY 335
Query: 374 LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
AL+ ++ ++ K+ ++ GS + R+ A +E RI
Sbjct: 336 GLTDD-----ALFTLLHDQAKVILNRGSDYGSEGELHARLNIA-APKSLVEEICKRI 386
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 57/354 (16%), Positives = 131/354 (37%), Gaps = 57/354 (16%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
+ ++ ++ + + ++ S G A + L D ++ P Y F
Sbjct: 70 DSYNESIVNWLYRRHN--WKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPF 127
Query: 157 DRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ ++ +L+ P+ + ++ + E +E + K ++ NP NP+G
Sbjct: 128 NSVVK-NNNRELIISPLQKLENGNYIMDYEDIENKIKDV-------KLFILCNPHNPVGR 179
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
++ LK + + N+ ++ DEI++ + K+ + +A I ++ +N I
Sbjct: 180 VWTKDELKKLGDICLKHNVKIISDEIHSDIIL-KKHKHIPMAS-ISKEFE--KNTI-TCM 234
Query: 275 SLSKDMGFPGFRVGIIYSYN----DQVVSCARKM-----SSFGLVSSQT---------QH 316
+ +K G + + + + ++ + F LV+++ +
Sbjct: 235 APTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLES 294
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
+ + S+ F K+I E+ + K LW+D L
Sbjct: 295 FLEYLESNIDFAIKYINENMP----------------KLKVRKPEGTYLLWVDFSALGLS 338
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
L +++ + K+ ++ G+SF G+ R+ A +E AL RI
Sbjct: 339 DE-----ELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRI 386
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 58/397 (14%), Positives = 117/397 (29%), Gaps = 63/397 (15%)
Query: 63 VEDWLMNNPKASICSAEGLNEFKGIAIFQDY---HGLPEFRNAVAKFMGKVRGNRITFDP 119
+ + L++ P + +G + Y G+ + R A+ +G
Sbjct: 49 LSNDLLSLPGGDFRTKDG------VDCRN-YGGLLGIADIRELWAEALG--------LPA 93
Query: 120 DRIVMSGGA--------------TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTG 165
D +V G+ G +++ A+ +L P P Y G
Sbjct: 94 DLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF-G 152
Query: 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV-LITNPSNPLGTFLDRETLKDI 224
+++ V M + + ++KG+ + NP G +T +++
Sbjct: 153 FEMINVPMTDEG---PDMGVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTCREL 204
Query: 225 VSFINE-KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283
+ +V D YA + E V Q + S SK +
Sbjct: 205 AEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMS-STSK-ITHA 262
Query: 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQ-TQHLIATMLSDDQFVEKFIAESAKRIAER 342
G V S + + A + G+ ++ Q A D ++ + + A +A +
Sbjct: 263 GSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPK 322
Query: 343 HKAFTWGLSQ-----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397
+ L G F+ +D+ A + + L
Sbjct: 323 FERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGT------ASRVVELAKEAGIALT- 375
Query: 398 SPGSSFHC----PNPGWFRVCFANMDDRTMEIALSRI 430
S PN R+ + +E+A+
Sbjct: 376 -GAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 56/354 (15%), Positives = 121/354 (34%), Gaps = 56/354 (15%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
E++ V K+M R ++ D I+ + G A PGD ++ TP Y F
Sbjct: 69 EEYKKTVKKWMKD-R-HQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPF 126
Query: 157 DRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
++ +++ ++ + + + LE + +++ N + +L +P NP+G
Sbjct: 127 FMAIK-NQERKIIECELLEKD-GYYTIDFQKLE---KLSKDKNNKA--LLFCSPHNPVGR 179
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
++ L+ I + + ++ L DEI+ + ID+ +A I
Sbjct: 180 VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHTVFQS-IDEQLA--DKTI-TFT 234
Query: 275 SLSKDMGFPGFRVGIIYSYN----DQVVSCARKM-----SSFGLVSSQT---------QH 316
+ SK G + I N ++ ++ G + +
Sbjct: 235 APSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDG 294
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
I + + + V+ F + I W+D L +
Sbjct: 295 CIKVIDKNQRIVKDFFEVNHP----------------EIKAPLIEGTYLQWIDFRALKMD 338
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
A+ +I++ ++ G F G+ R+ A ++ +L R+
Sbjct: 339 HK-----AMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERL 386
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 7e-17
Identities = 48/361 (13%), Positives = 109/361 (30%), Gaps = 62/361 (17%)
Query: 93 YHGLP--EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT 150
Y EF A+A + + D +V + ++ G+ ++ T
Sbjct: 61 YSRWKNDEFLAAIAHWFS--TQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHT 118
Query: 151 PYYPGFDRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
P Y F + + ++ + + + + M LE + +I +L+ +P
Sbjct: 119 PAYDAFYKAIE-GNQRTVMPVALEKQA-DGWFCDMGKLE---AVLAKPECKI--MLLCSP 171
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
NP G + L+ + + ++ DEI+ V+ E + + + +
Sbjct: 172 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW-GEQPHIPWSNVARG------D 224
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQV----------VSCARKMSSFGLVSSQT---- 314
++ S SK P N S L +
Sbjct: 225 WA-LLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ 283
Query: 315 -----QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMD 369
L + + ++ + + + + W+D
Sbjct: 284 GAPWLDALRIYLKDNLTYIADKMNAAFP----------------ELNWQIPQSTYLAWLD 327
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L L + AL + +I + K+ + PG ++ G+ R+ +E ++
Sbjct: 328 LRPLNIDDN-----ALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAG 381
Query: 430 I 430
+
Sbjct: 382 L 382
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 68/354 (19%), Positives = 125/354 (35%), Gaps = 57/354 (16%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
+ AV + K + + I+ G A ++ GDA L+ +P Y F
Sbjct: 99 DDLYQAVIDWERK-E-HDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPF 156
Query: 157 DRDLRWRTGVQLV--PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
R +R +LV + + F++ E LE + ++N++I L+ +P NP G
Sbjct: 157 ARTIR-LNDHRLVENSLQIIN-GRFEIDFEQLE---KDIIDNNVKI--YLLCSPHNPGGR 209
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
D + L I + + LV DEI+ ++ S+ +D I I+
Sbjct: 210 VWDNDDLIKIAELCKKHGVILVSDEIHQDLAL-FGNTHHSLNT-LDASYK--DFTI-ILS 264
Query: 275 SLSKDMGFPGFRVGIIYSYN----DQVVSCARKM-----SSFGLVSSQT---------QH 316
S +K G + N + + G++++Q +
Sbjct: 265 SATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE 324
Query: 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE 376
L + + + V K + E I ++ +W+D
Sbjct: 325 LKTVIEGNIKLVIKEL--------EAKT---------KIKVMEPEGTYLVWLDFSAYAIA 367
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
Q L + NE K+ ++ G+ F + R+ A T++ ALSRI
Sbjct: 368 QP-----QLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRI 415
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 55/324 (16%), Positives = 108/324 (33%), Gaps = 56/324 (17%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YY 153
R VA F + + ++ + G E + L D ++ TP Y
Sbjct: 70 SSLRKEVADFYQ--------LEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQY 121
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
G ++ + D + +E + A ++ + V I NP+NP G
Sbjct: 122 RQNAL----IEGAEVREI--PLLQDGEHDLEGMLNAIDE------KTTIVWICNPNNPTG 169
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
+++ ++ + + ++ +V DE Y V +++ +NLI I
Sbjct: 170 NYIELADIQAFLDRVPS-DVLVVLDEAYIEYV---TPQPEKHEKLVRT----YKNLI-IT 220
Query: 274 YSLSKDMGFPGFRVGIIYSY-NDQVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKF 331
+ SK G RVG Y + +++ + F +S Q L + D F+ +
Sbjct: 221 RTFSKIYGLASARVG--YGIADKEIIRQLNIVRPPFN-TTSIGQKLAIEAIKDQAFIGEC 277
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWR--VI 389
+A I + + +N F+ +D L + L + I
Sbjct: 278 RTSNANGIKQYEAFAK---RFEKVKLYPANGN-FVLID----LGIEAGTIFSYLEKNGYI 329
Query: 390 INEVKLNVSPGSSFHCPNPGWFRV 413
G++ P R+
Sbjct: 330 -------TRSGAALGFPT--AVRI 344
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 63/353 (17%), Positives = 118/353 (33%), Gaps = 63/353 (17%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGG-ATGAHETV-AFCLADPGDAFLVPTPYYP 154
A A+F G P+ I G + + F +VPTP YP
Sbjct: 61 SLLSQATAEFYADRYG--YQARPEWIFPIPDVVRGLYIAIDHFT--PAQSKVIVPTPAYP 116
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
F L T + + + + + +E ++ + +L+ NP NPLG
Sbjct: 117 PFFHLLS-ATQREGIFI----DATGGINLHDVEKGFQA------GARSILLCNPYNPLGM 165
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
E L ++ + + ++ DEI+A VF + A + D I +
Sbjct: 166 VFAPEWLNELCDLAHRYDARVLVDEIHAPLVF--DGQHTVAAGVSDT---AASVCI-TIT 219
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKM--------SSFGLVSSQT---------QHL 317
+ SK G + I N +++ S+ GL++++
Sbjct: 220 APSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQE 279
Query: 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQ 377
+A + ++ F+ I + G A +W+D E
Sbjct: 280 VAYLKNNHDFLLHEIPKRIP----------------GAKITPMQATYLMWIDFRDTTIEG 323
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ I + K+ ++ G+ F G+ R+ FA +E A+ R+
Sbjct: 324 ------SPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRM 369
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 42/281 (14%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YY 153
N +A + I+++ G++ A ++P
Sbjct: 54 LMLGNKLAAHHQ--------VEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDG 105
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
F + G+++ V ++ +E L+AA V + NP+NP G
Sbjct: 106 EHFAK----IAGMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSIVYLVNPNNPTG 155
Query: 214 TFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
T + I +I N + DE YA F + F SI+ +I Q N+I
Sbjct: 156 TITPAD---VIEPWIASKPANTMFIVDEAYAE--FVNDPRFRSISPMITQG---AENII- 206
Query: 272 IVYSLSKDMGFPGFRVGIIYSY-NDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVE 329
++ + SK G RVG Y+ + V++ + + ++ ++D F+
Sbjct: 207 LLKTFSKIHAMAGMRVG--YAVAHPTVIALMGRYVAGEK-INFSGVDAALASMNDSAFIT 263
Query: 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
S K + L + + L S F++ L
Sbjct: 264 Y----SKKSNDVSRQILLKALEDLKLPYLPSEGN-FVFHQL 299
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 53/252 (21%), Positives = 102/252 (40%), Gaps = 38/252 (15%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPG-DAFLVPTPYYP- 154
A++ G P+++++S GA E + +PG DA L P Y
Sbjct: 61 KAVIENYAQYAG--------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGM 112
Query: 155 -GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ GV+ V +++++ ++ + + +K V + +P+NP G
Sbjct: 113 YSVSAET---IGVECRTVPTL--DNWQLDLQGISDKLDG-------VKVVYVCSPNNPTG 160
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
++ + + ++ K I +V DE Y F ++S +A +L I+
Sbjct: 161 QLINPQDFRTLLELTRGKAI-VVADEAYIE--FCPQASLAGW-------LAEYPHLA-IL 209
Query: 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIA 333
+LSK G R G + N++V++ K+ + +S+ + A LS V +
Sbjct: 210 RTLSKAFALAGLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVA--MR 266
Query: 334 ESAKRI-AERHK 344
E +I AER
Sbjct: 267 ERVAQIIAEREY 278
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 51/280 (18%), Positives = 100/280 (35%), Gaps = 40/280 (14%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YY 153
E ++ +A+ + I++ G+ E + +AFL Y
Sbjct: 68 IELKSTLAQKYK--------VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMY 119
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
+ + + G + S + L ++ IK + + P+NPLG
Sbjct: 120 EIYAK----QCGAKCYKT--QSITHNLDEFKKLYETHKD------EIKLIFLCLPNNPLG 167
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHI 272
LD + + +NE + +V D Y K+ + E+I + N++
Sbjct: 168 ECLDASEATEFIKGVNE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKE----FDNVL-Y 221
Query: 273 VYSLSKDMGFPGFRVGIIYSY-NDQVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEK 330
+ + SK G G R+G Y N ++S K+ + F VS+ + DD+F EK
Sbjct: 222 LGTFSKLYGLGGLRIG--YGIANANIISAFYKLRAPFN-VSNLALKAAVAAMDDDEFTEK 278
Query: 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
+ + + + + + I + S F+
Sbjct: 279 ----TLENNFSQMELYKEFAKKHNIKIIDSYTN-FITYFF 313
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 50/278 (17%), Positives = 98/278 (35%), Gaps = 36/278 (12%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YY 153
E R+ +A ++ K G + D + + G+ + + PG L P +
Sbjct: 72 VELRDELAAYITKQTGVAV--TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMH 129
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
P + T + + V + DF++ M+ + V +T P+NP G
Sbjct: 130 PILAKG----THTEFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVTTPNNPTG 178
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
+ D+ IN ++ DE YA F+ S ++ E L+ +
Sbjct: 179 DVTSLD---DVERIINVAPGIVIVDEAYAE--FSPSPSATTLLE------KYPTKLV-VS 226
Query: 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVEKFI 332
++SK F G R+G + N + + + +S+ +Q L +
Sbjct: 227 RTMSKAFDFAGGRLGYFVA-NPAFIDAVMLVRLPYH-LSALSQAAAIVALRHSADTLGTV 284
Query: 333 AESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
+ ER L ++G + S + F++
Sbjct: 285 EKL---SVER-VRVAARLEELGYAVVPSESN-FVFFGD 317
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 55/280 (19%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAF-CLADPGDAFLVPTP---Y 152
P +A+ D +++ G E F+ P
Sbjct: 54 PRVMRKLAEHFS--------CPEDNLML---VRGIDECFDRISAEFSSMRFVTAWPGFDG 102
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
Y +G++ + +D + L R V++ NPSNP
Sbjct: 103 YRARIA----VSGLRHFEIGLT--DDLLLDPNDLAQV--------SRDDCVVLANPSNPT 148
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G L L + ++ L+ DE Y ++ + +A N + +
Sbjct: 149 GQALSAGELDQLR----QRAGKLLIDETYVD--YSSFR---------ARGLAYGENEL-V 192
Query: 273 VYSLSKDMGFPGFRVGIIYSY-NDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVEK 330
S SK G G R+G + ++++ ++ V + H + L +D+ E
Sbjct: 193 FRSFSKSYGLAGLRLG--ALFGPSELIAAMKRKQWFCN-VGTLDLHALEAALDNDRAREA 249
Query: 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL 370
IA++ +A+R + L +G S A F+ ++
Sbjct: 250 HIAKT---LAQR-RRVADALRGLGYRVASSEAN-FVLVEN 284
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 66/326 (20%), Positives = 115/326 (35%), Gaps = 58/326 (17%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSG-GATGAHETVAFCLADPGDAFLVPTP---Y 152
R + + M V+ G G+ +A A PG + P P
Sbjct: 70 EALRAKLKEVMQ--------VPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVM 121
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
Y + G++ V V + DF + A+ AA + + V + P+NP
Sbjct: 122 YAMSAQF----AGLEFVGVPLRA--DFTLDRGAMLAAMAEH-----QPAIVYLAYPNNPT 170
Query: 213 GTFLDRETLKDIVSFINEKNIH--LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
G D ++ IV +V DE Y F +ES ++ + D NL+
Sbjct: 171 GNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP--FAQES---WMSRLTDFG-----NLL 220
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVE 329
++ ++SK +G G R+G + + Q + K+ + V+ T+ L ++
Sbjct: 221 -VMRTVSK-LGLAGIRLGYVAG-DPQWLEQLDKVRPPYN-VNVLTEATALFALEHVAVLD 276
Query: 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWR-- 387
+ A+ AER + + G+ S A FL + QT++ L
Sbjct: 277 EQAAQL---RAERSRVAEGMAAHGGVTVFPSAAN-FLLARVPD--AAQTFD---RLLARK 327
Query: 388 VIINEVKLNVSPGSSFHCPNPGWFRV 413
V+ + S H RV
Sbjct: 328 VL-------IKNVSKMHPLLANCLRV 346
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 4e-11
Identities = 51/271 (18%), Positives = 91/271 (33%), Gaps = 50/271 (18%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YY 153
+ R + G FDP I+M+ G+ + A G+ P YY
Sbjct: 68 QKLREVAGELYG--------FDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYY 119
Query: 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG 213
G ++ DF++ A + K +T P+ PLG
Sbjct: 120 GTLAE----VQGARVRTFGLT--GDFRI---AGFPERYEG-------KVFFLTTPNAPLG 163
Query: 214 TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273
E I LV DE YA F + ++ E++ + + N++ +
Sbjct: 164 PSFPLE---YIDELARRCAGMLVLDETYAE--FAESNAL----ELVRR----HENVV-VT 209
Query: 274 YSLSKDMGFPGFRVGIIYSY-NDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVEKF 331
+LSK G R+G + +V++ K+ + + Q L D ++ +
Sbjct: 210 RTLSKSYSLAGMRIG--LAIARPEVIAALDKIRDHYN-LDRLAQAACVAALRDQAYLSEC 266
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362
+ R + FT L +G + S
Sbjct: 267 C---RRIRETR-EWFTTELRSIGYDVIPSQG 293
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 50/288 (17%), Positives = 99/288 (34%), Gaps = 52/288 (18%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP---YYP 154
E + ++ + + + GA E + + D + P Y
Sbjct: 60 ELIEKILSYLD-----TDFLSKNNVSV---GNGADEIIYV-MMLMFDRSVFFPPTYSCYR 110
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
F + G + + V D ++ E + V I NP+NP G
Sbjct: 111 IFAKA----VGAKFLEVPLTK--DLRI----PEVNVGEG-------DVVFIPNPNNPTGH 153
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
+RE ++ I+ + + DE Y F ES + + + NL ++
Sbjct: 154 VFEREEIERIL----KTGAFVALDEAYYE--FHGES---YVDFLKKYE-----NLA-VIR 198
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSFGLVSSQTQHLIATMLSDDQFVEKFIA 333
+ SK RVG + + +++ + ++ F VS +Q L + E+
Sbjct: 199 TFSKAFSLAAQRVGYVVA-SEKFIDAYNRVRLPFN-VSYVSQMFAKVALDHREIFEERT- 255
Query: 334 ESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEA 381
+ ER + + L ++G S F+++ + KE+ E
Sbjct: 256 --KFIVEERERMKSA-LREMGYRITDSRGN-FVFVFMEKEEKERLLEH 299
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 33/153 (21%)
Query: 100 RNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP-----TPYYP 154
N + KF+G D ++ GA A V LA ++ + Y
Sbjct: 60 HNQLPKFLGC----------DVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA 109
Query: 155 GFDRDLRW-RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG---VLITNPSN 210
R G+ + V D+ +T E + + E + LIT P
Sbjct: 110 -------AERAGLNIALVPKTDYPDYAITPE----NFAQTIEETKKRGEVVLALITYPDG 158
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243
G D +K I +E ++ L+ + YA
Sbjct: 159 NYGNLPD---VKKIAKVCSEYDVPLLVNGAYAI 188
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 6e-06
Identities = 63/313 (20%), Positives = 108/313 (34%), Gaps = 75/313 (23%)
Query: 95 GLPEFRNAVAKFM-GKVR-GNRITFDPDRIVMSGGATGA-HETVAFCLADPGDAFLVPTP 151
G+P+F A K G R I R + + G TG H + +PGD L
Sbjct: 81 GIPDFLCAAEKECFGNFRPEGHI-----RSIATAGGTGGIHHLIHN-YTEPGDEVLTADW 134
Query: 152 Y-----------------YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194
Y Y FD F+ + L Q
Sbjct: 135 YWGAYRVICSDTGRTLVTYSLFDEH----NNFNHE--------AFQNRVNEL----AAKQ 178
Query: 195 ESNIRIKGVLITNPS-NPLGTFLDRETLKDIVSFINE------KNIHLVCDEIY---AAT 244
+ + V+ P NP G ++ + I++F+ + N+ + D Y +
Sbjct: 179 TNVV----VIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGE 234
Query: 245 VFTKESSFVSIAEIIDQDIACNRNLIHIV-YSLSKDMGFPGFRVG--IIYSYNDQVVSCA 301
+ F + + + ++ V YSLSK G RVG I S ++++
Sbjct: 235 KDEVRAFFNKFSHL-------PKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEF 287
Query: 302 R---KMSSFGLVSSQTQH---LIATMLSDDQFVEKFIAES---AKRIAERHKAFTWGLSQ 352
K +S S+ + +A +++D +++ AE + I +R F +Q
Sbjct: 288 FEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ 347
Query: 353 VGIGCLKSNAGLF 365
VG+ L G F
Sbjct: 348 VGLPMLPYRGGFF 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 58/440 (13%), Positives = 125/440 (28%), Gaps = 143/440 (32%)
Query: 42 TKNPNGV---IQMGLAENLLCHELVEDWLMNNPKASICSAEGLNE----------FKGIA 88
+K V ++ L N +LM+ P + + +
Sbjct: 73 SKQEEMVQKFVEEVLRINY-------KFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLV 148
+F Y+ + R + K+R + P + V+ G G+ +T +A D +
Sbjct: 125 VFAKYN-VS--R---LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW---VA--LDV-CL 172
Query: 149 PTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
D + W C+S +E L+ +I +
Sbjct: 173 SYKVQCKMDFKIFWLNLKN-----CNSPET---VLEMLQKLL-------YQIDPNWTSRS 217
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIH----LVCDEIYAA-----------TVFTKESSFV 253
+ L +++ + + + + LV + A + T + F
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFK 275
Query: 254 SIAEIIDQDIACNRNLIHIVYSLSKD----------------------MGFPGFRVGII- 290
+ + + + +L H +L+ D P R+ II
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIA 334
Query: 291 --------------YSYNDQVVSCARKMSSFGLVSSQTQHL------------IATML-- 322
+ D++ + + S L ++ + + I T+L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 323 -----SDDQFVEKFIAESAKR--IAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK 375
V + + K + ++ K T + ++ LK
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----------------PSIYLELK 436
Query: 376 EQTYEAEMALWRVIINEVKL 395
+ E E AL R I++ +
Sbjct: 437 VKL-ENEYALHRSIVDHYNI 455
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.98 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.98 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.98 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.98 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.96 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.96 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.96 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.95 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.94 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.94 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.94 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.93 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.93 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.92 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.92 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.92 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.91 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.91 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.91 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.91 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.91 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.9 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.9 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.9 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.89 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.89 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.88 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.88 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.88 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.88 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.86 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.86 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.77 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.8 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.72 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.72 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.69 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.67 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.64 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.63 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.53 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.51 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.5 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.46 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 82.99 |
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=460.84 Aligned_cols=427 Identities=56% Similarity=1.055 Sum_probs=352.3
Q ss_pred hhhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCcccccccccccccccc
Q 011570 10 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAI 89 (483)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (483)
+.+++++.+.-+++.++||..|..+..++|++..||.++|+|++++|+++.+.+.+++.+.........++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (435)
T 3piu_A 2 RMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELAL 81 (435)
T ss_dssp ----------------CTTHHHHHHHHSBCBTTTBTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHH
T ss_pred CccchhhhhcccccCcchhhHHHHhhcCCCCcccCCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccc
Confidence 35788889999999999999999999999999999999999999999999999999988765432222222222334568
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
|++..|.++||+++|+++++.++.++++++++|++|+|+++++..++.+++++||.|+++.|+|..+...+....|.+++
T Consensus 82 y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIV 161 (435)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEE
T ss_pred cCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEE
Confidence 99999999999999999997766556778999999999999999999999999999999999999998887733499999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++++++++|.+|++.|++++++...++.++++|++++||||||.+++.+++++|+++|++||+++|+||+|.++.|++
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~- 240 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS- 240 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-
Confidence 9999887789999999999998876666689999999999999999999999999999999999999999999988877
Q ss_pred CCcchHHHhhhhccccC-----CCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCC
Q 011570 250 SSFVSIAEIIDQDIACN-----RNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD 324 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~-----~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~ 324 (483)
..+.++..+..+. ..+ .+++++++||||.+|++|+|+||++++++.+.+.+.....++.+++++|.++++++.+
T Consensus 241 ~~~~~~~~~~~~~-~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 319 (435)
T 3piu_A 241 PSFISVMEVLKDR-NCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSD 319 (435)
T ss_dssp SCCCCHHHHHHC--------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHC
T ss_pred CCCcCHHHhcccc-ccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhcC
Confidence 6666776664410 001 5788999999999999999999999977778877777777777899999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH 404 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~ 404 (483)
..++++++++.+++++++++++.+.|.+.|+++.++.+|+|+|++++............+++..|++++||.+.||..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~ 399 (435)
T 3piu_A 320 KKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH 399 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccC
Confidence 88777788889999999999999999999999999999999999998654333333455788888888899999999998
Q ss_pred CCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 405 CPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 405 ~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
..+++++||+++..+++++++++++|++++++..
T Consensus 400 ~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 400 CTEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp CSSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 7778899999985589999999999999998753
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-55 Score=446.34 Aligned_cols=425 Identities=70% Similarity=1.244 Sum_probs=342.6
Q ss_pred hhhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccC
Q 011570 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIF 90 (483)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 90 (483)
++++|+...-.+...|+|..+..+..++|++..++.++|+|+.++|+++++.+.+++...+...+.. ++.........|
T Consensus 1 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~Y 79 (428)
T 1iay_A 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANF 79 (428)
T ss_dssp CCCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHC
T ss_pred CcccccccccCcccccccchhhhhccCCCCcccCCCceeeeccccchhhHHHHHHHHHhcccccccc-ccccccHhhcCC
Confidence 3677777766666678999999998889999998889999999999999888888887654322111 111112235689
Q ss_pred CCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 91 QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 91 ~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
+++.|..+||+++|+++++.+|...++++++|++|+|+++++..++.+++++||.|+++.|+|+.+...+....|.+++.
T Consensus 80 ~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~ 159 (428)
T 1iay_A 80 QDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIP 159 (428)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEE
Confidence 98889999999999999988774444778999999999999999999999999999999999999887554334999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+|++.+++|.+|++.|++++++....+.++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|++ .
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~-~ 238 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT-P 238 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS-S
T ss_pred eecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCC-C
Confidence 998765678899999999998654445578999999999999999999999999999999999999999999877765 4
Q ss_pred CcchHHHhhhhc--cccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHH
Q 011570 251 SFVSIAEIIDQD--IACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 251 ~~~s~~~l~~~~--~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (483)
.+.++..+.... .....++++++.||||.||++|+|+||++++++.+.+.+.....++.+++++|.++..++.+..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 318 (428)
T 1iay_A 239 QFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFV 318 (428)
T ss_dssp CCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHH
T ss_pred CccCHHHhccccccccCCCCcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhcChHHH
Confidence 455666664310 000158899999999999999999999999667777777666666678999999999999987766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
++++++.++.++++++++.+.|+++|+++.++.+|+|+|++++............++++.|++++||.++||..|+..++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~ 398 (428)
T 1iay_A 319 DNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEP 398 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence 77888899999999999999999889988888788999999975321111123346788888777999999998876556
Q ss_pred CEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 409 GWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 409 ~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+++||+++..+++++++++++|++++++.
T Consensus 399 ~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 427 (428)
T 1iay_A 399 GWFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp SEEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHhcc
Confidence 89999998569999999999999988654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=399.33 Aligned_cols=350 Identities=21% Similarity=0.328 Sum_probs=287.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhhhc
Q 011570 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRWRT 164 (483)
Q Consensus 86 ~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~ 164 (483)
....|++..|..+||+++++++++.+| +++++++|++|+|+++++..++.+++ ++||.|+++.|+|+.+...++..
T Consensus 126 ~~~~Y~~~~G~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~- 202 (500)
T 3tcm_A 126 ATGAYSHSQGIHGLRDAIASGIASRDG--FPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALH- 202 (500)
T ss_dssp CSSSCCCTTCCHHHHHHHHHHHHHHHS--SCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHT-
T ss_pred cCCCcCCCcChHHHHHHHHHHHHhhcC--CCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHc-
Confidence 356899999999999999999998877 56789999999999999999999998 89999999999999999999886
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
|++++.++++++++|.+|++.|++++++...++.++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.++
T Consensus 203 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~ 282 (500)
T 3tcm_A 203 GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQEN 282 (500)
T ss_dssp TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcccc
Confidence 99999999998888999999999999887666668999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCcchHHHhhhhccc-cCCCeEEEEecCcccc-CCCCceEEEEEec--ChHHHHHHHHhhh-cCCCChHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIA-CNRNLIHIVYSLSKDM-GFPGFRVGIIYSY--NDQVVSCARKMSS-FGLVSSQTQHLIA 319 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~-~~~~~vi~~~S~SK~~-g~~GlRiG~li~~--~~~l~~~~~~~~~-~~~~s~~~q~~~~ 319 (483)
.|++...+.++..+...+.. ....++++++||||+| |++|+|+||+++. ++.+.+.+..... ....+.+.|.++.
T Consensus 283 ~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~ 362 (500)
T 3tcm_A 283 IYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILAS 362 (500)
T ss_dssp BCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHHhcccCCCHHHHHHHH
Confidence 88652456676655432210 0234689999999999 8999999999982 4445555544433 4557888999998
Q ss_pred HhcCChh-------HHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecC--chh-h---ccChHHHHHH
Q 011570 320 TMLSDDQ-------FVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH--HLL-K---EQTYEAEMAL 385 (483)
Q Consensus 320 ~~l~~~~-------~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~--~~~-~---~~~~~~~~~~ 385 (483)
.++.... .+.++..+.++.++++++++.+.|+++ |+++.++++|+|+|+++. ... + ......+..+
T Consensus 363 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~ 442 (500)
T 3tcm_A 363 LVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFY 442 (500)
T ss_dssp HHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCHHHHHHHHHHTSCHHHHH
T ss_pred HHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCchhhHHHHHhcCCCcHHHH
Confidence 8887421 124556777889999999999999998 999999999999996553 211 0 0011123355
Q ss_pred HHHHHHhcCeEeeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 386 WRVIINEVKLNVSPGSSFHC-PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~-~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+..+++++||.+.||+.|+. .+.+++|++++ .+++++++++++|++++++..+
T Consensus 443 ~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~~~~~ 496 (500)
T 3tcm_A 443 ALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHEAFMS 496 (500)
T ss_dssp HHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 67788888999999999985 45678999999 7899999999999999987654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-49 Score=395.88 Aligned_cols=350 Identities=21% Similarity=0.369 Sum_probs=285.1
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|.++||++++++++..+| +.+++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~ 96 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETIV 96 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 46799999988765 3444554433100 1134688888999999999999998776 5568899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++++|.+|+++|++++.+ ++++|+
T Consensus 97 t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 169 (385)
T 1b5p_A 97 TVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKALV 169 (385)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEEE
T ss_pred cCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHHhcCC------CCEEEE
Confidence 999999999999999999999999999999999988876 9999999998656789999999988753 689999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.++|.+++++|+++|+++|++||+||+|+++.+++ .+.++.++. . +++++++||||.+|++|
T Consensus 170 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~------~-~~~i~~~s~SK~~~~~G 240 (385)
T 1b5p_A 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG--EHFSPGRVA------P-EHTLTVNGAAKAFAMTG 240 (385)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCGGGTC------T-TTEEEEEESTTTTTCGG
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC--CCCCHHHcC------C-CCEEEEEechhhcCCcc
Confidence 99999999999999999999999999999999999999877654 234554441 2 78999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||+++ ++.+.+.+...... ..++.++|.++.+++.......+++++.++.++++++++.+.|+++|+++.++++
T Consensus 241 ~RiG~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 319 (385)
T 1b5p_A 241 WRIGYACG-PKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSG 319 (385)
T ss_dssp GCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSB
T ss_pred cceEEEEe-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCe
Confidence 99999999 56666665554433 4578899999888886511113457888889999999999999888999889999
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
++|+|++++.. . .+..++++.|+ ++||.++||+.|+. ++++||+++ .+++++++++++|+++++
T Consensus 320 ~~~~~~~~~~~-~----~~~~~l~~~l~-~~gv~v~~g~~f~~--~~~iRis~~-~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 320 AFYVLMDTSPI-A----PDEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVLG 383 (385)
T ss_dssp TTEEEEECTTT-C----SSHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC-
T ss_pred eEEEEEecCCC-C----CCHHHHHHHHH-HCCeEEecccccCC--CCeEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 99999998631 1 01336788887 67999999999864 679999998 689999999999987664
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=386.51 Aligned_cols=360 Identities=19% Similarity=0.308 Sum_probs=289.2
Q ss_pred CCcccccchhhhh---cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 46 NGVIQMGLAENLL---CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.++|+|+.+.+.. +++.+.+++.+... + ......+|++..|.++||+++++++.+.+| ++ ++++|
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~------~---~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~-~~~~v 143 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIME------K---YADKALQYGTTKGFTPLRETLMKWLGKRYG--IS-QDNDI 143 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHH------H---SHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CC-TTSEE
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHH------h---hhHHHhCCCCCCCcHHHHHHHHHHHHHhcC--cC-ChhhE
Confidence 3678998775432 45555555443100 0 001245799888999999999999977766 44 78999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||.|+++.|+|..+...++.. |.+++.+|++++ .+|++.|+++++....++.++++
T Consensus 144 ~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~L~~~l~~~~~~~~~~k~ 219 (448)
T 3aow_A 144 MITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFY-EPQYIQIPLDDE---GMKVEILEEKLKELKSQGKKVKV 219 (448)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEE
T ss_pred EEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHhhhhccCCCCeE
Confidence 99999999999999999999999999999999999988876 999999998754 38999999998632112237888
Q ss_pred E-EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 203 V-LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 203 i-~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
| ++++|+||||.+++.+++++|+++|++||++||+||+|.++.|++ ..+.++.++. ..+++++++||||.+|
T Consensus 220 v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g-~~~~~~~~~~------~~~~vi~~~S~SK~~~ 292 (448)
T 3aow_A 220 VYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG-NPEKKIKALD------NEGRVIYLGTFSKILA 292 (448)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSS-CCCCCTGGGC------TTSCEEEEEESTTTTC
T ss_pred EEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC-CCCcCHHhcC------CCCCEEEEccchhhcc
Confidence 7 568999999999999999999999999999999999999988766 4445665552 2468999999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cce
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GIG 356 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi~ 356 (483)
+|+|+||++++ +.+.+.+..... ...+++++|.++.++|.... +.+++++.++.++++++++.+.|++. |++
T Consensus 293 -~GlriG~v~~~-~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~ 369 (448)
T 3aow_A 293 -PGFRIGWMVGD-PGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPRRDAMLEALEEFMPEGVK 369 (448)
T ss_dssp -GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred -ccccEEEEEeC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 99999999995 666665544332 24578899999999998754 36778888999999999999999875 788
Q ss_pred eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 357 CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 357 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+..|.+|+|+|++++...+ ..+++..|+++ ||.+.||..|+.. .++++||+++..+++++++++++|++++
T Consensus 370 ~~~p~~g~~~~v~~~~~~~------~~~l~~~l~~~-gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l 442 (448)
T 3aow_A 370 WTKPEGGMFIWVTLPDGID------SKKMLERAIKK-GVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETI 442 (448)
T ss_dssp ECCCSBSSEEEEECSTTCC------HHHHHHHHHHT-TEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHH
T ss_pred EeCCCccEEEEEEcCCCCC------HHHHHHHHHHC-CcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 8888999999999985322 33778888876 9999999988653 4679999998668999999999999998
Q ss_pred HHhh
Q 011570 435 LKNV 438 (483)
Q Consensus 435 ~~~~ 438 (483)
++..
T Consensus 443 ~~~~ 446 (448)
T 3aow_A 443 KEEL 446 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=385.86 Aligned_cols=361 Identities=18% Similarity=0.300 Sum_probs=288.3
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i 122 (483)
+.++|||+.++++++ ++.+.+++.+.... .....|++..|..+||+++|+++.+.+| +++++ ++|
T Consensus 36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~ia~~~~~~~g--~~~~~~~~v 102 (412)
T 2x5d_A 36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQR-----------EDTHGYSTSRGIPRLRRAISHWYRDRYD--VQIDPESEA 102 (412)
T ss_dssp TCCCEECSSCCCCSCCCHHHHHHHHHTC--------------------CTTCCHHHHHHHHHHHHHHHC--CCCCTTTSE
T ss_pred CCCEEecCCCCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCcCE
Confidence 346799999988764 45666666542211 1135788778999999999999987776 44677 799
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++++|.+|++.|++++. .++++
T Consensus 103 ~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~ 175 (412)
T 2x5d_A 103 IVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIA-GAQVRSVPLVPGIDFFNELERAIRESI------PKPRM 175 (412)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHH-TCEEEEEECSTTSCHHHHHHHHHHTEE------SCCSE
T ss_pred EEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeecCCccCCCCCHHHHHHhcc------cCceE
Confidence 99999999999999999999999999999999999988876 999999998865567789999988774 27899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|++||++||+||+|.++.+.+ ..+.++..+.. ..+++++++|+||.+|+
T Consensus 176 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~ 249 (412)
T 2x5d_A 176 MILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDG-WKAPSIMQVPG-----AKDIAVEFFTLSKSYNM 249 (412)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----GGGTEEEEEECC-CCSC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCC-CCCCChhhccC-----ccCcEEEEecCccccCC
Confidence 9999999999999999999999999999999999999999987755 44455555421 13678999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+|+|+||+++ ++.+.+.+..... .+.+++++|.++..++... .+++++.++.++++++++.+.|.++|+++.++
T Consensus 250 ~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 325 (412)
T 2x5d_A 250 AGWRIGFMVG-NPELVSALARIKSYHDYGTFTPLQVAAIAALEGD---QQCVRDIARQYQQRRDVLVKGLREAGWMVENP 325 (412)
T ss_dssp TTSCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cccceEEEEc-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCC
Confidence 9999999999 5666666554433 2567889999988888653 23467778888999999999998889888888
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.+|+|+|++++..... .+..+++..|++++||.+.||..|+..+++++||+++. +++++++++++|++++++...
T Consensus 326 ~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 326 KASMYVWAKIPEPYAH---LGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE-NRDRLRQAVRGIKAMFRADGL 400 (412)
T ss_dssp SBSSEEEEECCTTTGG---GCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CeeeEEEEEcCCccCC---CCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999753210 01347888888777999999998865556899999985 899999999999999987644
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=382.02 Aligned_cols=345 Identities=14% Similarity=0.162 Sum_probs=268.6
Q ss_pred CCcccccchhh------hhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAEN------LLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|||+.++. +.+++.+.++.. ... .-....+|++..|.++||+++++|+....+ ..+++
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~----------~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~ 95 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVT----------ENYKEKPYLLGNGTEDFSTLTQNLIFGNNS--KYIED 95 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHH----------HHCCCCCCCTTSSCHHHHHHHHHHHHCSSC--TTTTT
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-Hhc----------CCCCCCCCCCCCCcHHHHHHHHHHHcCCCC--ccccc
Confidence 46799999962 123566666532 100 002346899999999999999999975543 23456
Q ss_pred Cc--EEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 120 DR--IVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 120 ~~--i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
++ |++|+|+++++.+++.++++ | |+|++++|+|+.|...++.. |++++.+|+.++++|.+|++.|++++.+.
T Consensus 96 ~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 171 (405)
T 3k7y_A 96 KKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESR-GFNLKYINFFDYNLIDINYDLFLNDLRNI-- 171 (405)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTT-TCEEEEECCEETTTTEECHHHHHHHHHHS--
T ss_pred cceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHc-CCeEEEEeccccccCCcCHHHHHHHHHhC--
Confidence 64 69999999999999999988 9 99999999999999999886 99999999854557899999999998752
Q ss_pred cCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCCeEEEE
Q 011570 196 SNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 196 ~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
+++++|++++| |||||.+++.+++++|+++|++|+++||+||+|.++.+++. ....++..+.. ..+++|++
T Consensus 172 --~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~-----~~~~~i~~ 244 (405)
T 3k7y_A 172 --PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE-----KNIAFSVC 244 (405)
T ss_dssp --CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT-----TTCCEEEE
T ss_pred --CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh-----cCCcEEEE
Confidence 24577888765 89999999999999999999999999999999999876531 11234444433 34789999
Q ss_pred ecCccccCCCCceEEEEEe--cChHHHHHH----HHh--hhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYS--YNDQVVSCA----RKM--SSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKRIAER 342 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~--~~~~l~~~~----~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~~ 342 (483)
+||||+||++|+|+||+++ +++.+.+.+ ... ..+...+.++|.+++.++.+..+ ..+++++.++.++++
T Consensus 245 ~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~ 324 (405)
T 3k7y_A 245 QSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNN 324 (405)
T ss_dssp EECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999865 355544332 222 22344567899999998887532 245567778889999
Q ss_pred HHHHHHhhh----cCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE
Q 011570 343 HKAFTWGLS----QVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVC 414 (483)
Q Consensus 343 ~~~l~~~L~----~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis 414 (483)
|+.+.+.|+ ++| +++.+|+||||+|++++. +++.+| +++||.+.||. |||
T Consensus 325 R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~-----------~~~~~L-~~~gV~v~p~~----------Ris 382 (405)
T 3k7y_A 325 RILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA-----------KIAEHL-KTHHIYIINNG----------RIN 382 (405)
T ss_dssp HHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG-----------GGTTTT-TTTTEECCTTS----------EEE
T ss_pred HHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH-----------HHHHHH-HHCCEeecCCC----------eEE
Confidence 999999999 776 688899999999998763 234456 78899999852 999
Q ss_pred eccCCHHHHHHHHHHHHHHHHH
Q 011570 415 FANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 415 ~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
++..++++++.++++|+++++.
T Consensus 383 ~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 383 VSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GGGCCTTHHHHHHHHHHHHHHC
T ss_pred EeccCHHHHHHHHHHHHHHHhh
Confidence 9877899999999999998763
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=377.88 Aligned_cols=352 Identities=20% Similarity=0.316 Sum_probs=288.0
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCC-
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPD- 120 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~- 120 (483)
...++|+|+.++++++ ++.+.+++.+.. .....|++..|..++|+++++++.+.+| ++ ++++
T Consensus 28 ~g~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 92 (396)
T 3jtx_A 28 EGMEAVPLHIGEPKHPTPKVITDALTASL-------------HELEKYPLTAGLPELRQACANWLKRRYD--GLTVDADN 92 (396)
T ss_dssp TTCCCEECSCCSCCSCCCHHHHHHHHHTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHTT--TCCCCTTT
T ss_pred cCCCeEEeCCcCCCCCCCHHHHHHHHHHh-------------hhccCCCCCCCcHHHHHHHHHHHHHhcC--CCCCCCCC
Confidence 3467899999998876 456666665421 2356899888999999999999998877 44 5688
Q ss_pred cEEEeCChhHHHHHHHHHhcCCC-----CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 121 RIVMSGGATGAHETVAFCLADPG-----DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~g-----d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
+|++|+|+++++..++.+++++| |+|+++.|+|..+...++.. |.+++.++++ +.+|.+|++.|++++.+
T Consensus 93 ~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~g~~~d~~~l~~~~~~--- 167 (396)
T 3jtx_A 93 EILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLG-GGEIHFANCP-APSFNPDWRSISEEVWK--- 167 (396)
T ss_dssp SEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHT-TCEEEEEECC-TTTCCCCGGGSCHHHHH---
T ss_pred eEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHc-CCEEEEeecC-CCCCccCHHHHHHhhcc---
Confidence 99999999999999999999997 79999999999999988876 9999999994 45788999999999875
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ ..+.+.......+. ...+++++++|
T Consensus 168 ---~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~i~~~s 242 (396)
T 3jtx_A 168 ---RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDG-NKPLGCLQAAAQLG-RSRQKLLMFTS 242 (396)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTT-CCCCCHHHHHHHTT-CCCTTEEEEEE
T ss_pred ---CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCchHHhhhhhcc-cccCcEEEEec
Confidence 78999999999999999999999999999999999999999999887765 33344433221000 02578999999
Q ss_pred CccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 276 LSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
|||.||++|+|+||+++ ++.+.+.+...... +.+++++|.++.+++.... ++++.++.++++++.+.+.|.+.
T Consensus 243 ~sK~~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 243 LSKRSNVPGLRSGFVAG-DAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQ----HVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp STTTSSCGGGCCEEEEE-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCCcccceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998 56666665544332 5578899999988887644 46777888999999999999876
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEeccCCHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFANMDDRTMEIAL 427 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~~~~e~l~~~l 427 (483)
+.+..+.+|+|+|++++.. ...+++..|++++||.+.||+.|+. ..++++||+++. +++++++++
T Consensus 318 -~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l 388 (396)
T 3jtx_A 318 -FDVKLPDASFYIWLKVPDG-------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAA 388 (396)
T ss_dssp -SCCCCCSSSSEEEEECTTS-------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHH
T ss_pred -CCccCCCeeEEEEEECCCC-------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHH
Confidence 5667888999999999851 1337788888888999999998875 246799999985 999999999
Q ss_pred HHHHHHH
Q 011570 428 SRITSFM 434 (483)
Q Consensus 428 ~~L~~~l 434 (483)
++|++++
T Consensus 389 ~~l~~~l 395 (396)
T 3jtx_A 389 EDIVSLY 395 (396)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=379.00 Aligned_cols=356 Identities=22% Similarity=0.392 Sum_probs=290.6
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc-EE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-IV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~-i~ 123 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..++|+++|+++.+.+| +++++++ |+
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~ 91 (389)
T 1gd9_A 26 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNG--IEADPKTEIM 91 (389)
T ss_dssp SSCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred cCeEecCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCCCeEE
Confidence 36789999988764 4455555443100 0124688888999999999999987766 4467889 99
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.+|++++++|.+|++.|++++.+ ++++|
T Consensus 92 ~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (389)
T 1gd9_A 92 VLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRAL 164 (389)
T ss_dssp EESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEE
T ss_pred EcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCCccCCCCCHHHHHHhcCc------CceEE
Confidence 9999999999999999999999999999999999988876 9999999987655688999999998853 68999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.++|.+++++|+++|++||++||+||+|.++.+++ ..+.++..+.. ..+++++++|+||.+|++
T Consensus 165 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~ 238 (389)
T 1gd9_A 165 IINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDD-ARHYSIASLDG-----MFERTITVNGFSKTFAMT 238 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----CGGGEEEEEESTTTTTCG
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC-CCCCCHhhccC-----CCCCEEEEecChhhcCCc
Confidence 999999999999999999999999999999999999999887765 33345554421 136789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+..... .+.+++++|.++..++..... .+++++.+++++++++++.+.|+++|+++..+.
T Consensus 239 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 316 (389)
T 1gd9_A 239 GWRLGFVAA-PSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPK 316 (389)
T ss_dssp GGCCEEEEC-CHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred ccceEEEEE-CHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHHHHHHHHHcCCeecCCC
Confidence 999999999 4666666654433 245788999999889887432 236788888999999999999998899888888
Q ss_pred ceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|+|+|++++. ..+ ..+++..|++++||.+.||..|+..+++++||+++. +++++++++++|++++++.
T Consensus 317 ~~~~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~~~~~ 386 (389)
T 1gd9_A 317 GAFYIFPRIRDTGLT------SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEEAMDRMERVLKER 386 (389)
T ss_dssp BTTEECCBCGGGTCC------HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHHHHHHHHHHHHHT
T ss_pred eeeEEEEeccCCCCC------HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhc
Confidence 99999999874 111 336788888677999999998875556899999985 8999999999999988654
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=390.79 Aligned_cols=359 Identities=20% Similarity=0.324 Sum_probs=288.2
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.+++.++ ++.+.+++.+.... .....|++..|.++||+++|+++.+.+| .++++++|+
T Consensus 56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~g--~~~~~~~v~ 122 (447)
T 3b46_A 56 GRELINLGQGFFSYSPPQFAIKEAQKALDI-----------PMVNQYSPTRGRPSLINSLIKLYSPIYN--TELKAENVT 122 (447)
T ss_dssp TSCCEECCCCSCSSCCCHHHHHHHHHHTTS-----------GGGGSCCCTTCCHHHHHHHHHHHTTTTT--SCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHhC-----------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEE
Confidence 357899999987664 45566655442110 1245799888999999999999987776 456788999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCC----------CcccCHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSN----------DFKVTMEALEAAYEKA 193 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~----------~~~~d~~~l~~~i~~~ 193 (483)
+|+|+++++..++.+++++||+|++++|+|+.+...++.. |.+++.+++++++ +|.+|++.|++++.+
T Consensus 123 ~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~- 200 (447)
T 3b46_A 123 VTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELC-GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS- 200 (447)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-
T ss_pred EeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-
Confidence 9999999999999999999999999999999999988876 9999999986543 688999999988752
Q ss_pred HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHh-hhhccccCCCeEEE
Q 011570 194 QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEI-IDQDIACNRNLIHI 272 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l-~~~~~~~~~~~vi~ 272 (483)
++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ . +.++..+ .. ..+++++
T Consensus 201 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~-~~~~~~~~~~-----~~~~~i~ 268 (447)
T 3b46_A 201 -----KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-S-FTRIATLSPE-----IGQLTLT 268 (447)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-C-CCCGGGSCHH-----HHTTEEE
T ss_pred -----CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-C-CcCHHHcCCC-----CCCcEEE
Confidence 78999999999999999999999999999999999999999999987764 2 2344443 11 1368999
Q ss_pred EecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGL 350 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 350 (483)
++|+||.+|++|+|+||+++.++.+.+.+.... ..+.++++.|.++.++|.... .+.++++.++.++++++++.+.|
T Consensus 269 i~S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~~~~~~~~~~~~l~~~L 347 (447)
T 3b46_A 269 VGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDAL-KIGYFEKMRQEYINKFKIFTSIF 347 (447)
T ss_dssp EEEHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999994455555554432 234578899998888886542 25567888899999999999999
Q ss_pred hcCCceeecCCceEEEeeecCchhhccC---------hHHHHHHHHHHHHhcCeEeeCCCCCCCC-----CCCEEEEEec
Q 011570 351 SQVGIGCLKSNAGLFLWMDLHHLLKEQT---------YEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCFA 416 (483)
Q Consensus 351 ~~~gi~~~~~~~g~f~~~~l~~~~~~~~---------~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----~~~~iRis~~ 416 (483)
+++|+++..+.+|+|+|++++....... .....+++..|++++||.+.||+.|+.. +++++||+++
T Consensus 348 ~~~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~ 427 (447)
T 3b46_A 348 DELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC 427 (447)
T ss_dssp HHHTCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC
T ss_pred HHCCCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe
Confidence 9889998889999999999975200000 0124478888887789999999988643 2579999998
Q ss_pred cCCHHHHHHHHHHHHH
Q 011570 417 NMDDRTMEIALSRITS 432 (483)
Q Consensus 417 ~~~~e~l~~~l~~L~~ 432 (483)
.+++++++++++|++
T Consensus 428 -~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 428 -KDDAYLENAVERLKL 442 (447)
T ss_dssp -SCHHHHHHHHHHGGG
T ss_pred -CCHHHHHHHHHHHHH
Confidence 489999999999976
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-46 Score=387.22 Aligned_cols=349 Identities=21% Similarity=0.326 Sum_probs=278.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCC----eEEEeCCCCcChHHHHhh
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD----AFLVPTPYYPGFDRDLRW 162 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~ 162 (483)
...|++..|.++||++||+++.+.+| ++++++++|++|+|+++++..++.+++++|| .|+++.|+|+.|...+..
T Consensus 122 ~~~Y~~~~G~~~lr~~ia~~~~~~~g-G~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~ 200 (498)
T 3ihj_A 122 LGSYSASQGVNCIREDVAAYITRRDG-GVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISE 200 (498)
T ss_dssp ------CCSCHHHHHHHHHHHHHHTT-TCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhcC-CCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHHHHH
Confidence 46799999999999999999987763 1557899999999999999999999999875 999999999999999988
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
. |++++.++++++++|.+|+++|++++++.... .++++|+++|||||||.++|.+++++|+++|+++|++||+||+|.
T Consensus 201 ~-g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~ 278 (498)
T 3ihj_A 201 L-DAIQVNYYLDEENCWALNVNELRRAVQEAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ 278 (498)
T ss_dssp T-TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTT-SEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred c-CCEEEEeeccccccCCCCHHHHHHHHHhhhcc-CCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc
Confidence 6 99999999998888999999999999864221 268999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCcchHHHhhhhcccc--CCCeEEEEecCcccc-CCCCceEEEEEe--cChHHHHHHHHhh-hcCCCChHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIAC--NRNLIHIVYSLSKDM-GFPGFRVGIIYS--YNDQVVSCARKMS-SFGLVSSQTQH 316 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~--~~~~vi~~~S~SK~~-g~~GlRiG~li~--~~~~l~~~~~~~~-~~~~~s~~~q~ 316 (483)
++.|++...+.++.++..++... ...++|+++||||.| |++|+|+||++. .++.+.+.+.... .....+.+.|.
T Consensus 279 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~~~~~~~~q~ 358 (498)
T 3ihj_A 279 DNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQA 358 (498)
T ss_dssp TCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred ccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhccCCCCHHHHH
Confidence 98887523567777664322100 123588999999999 899999999984 3666766665543 34557889999
Q ss_pred HHHHhcCC-----hhH--HHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhc------cChHHH
Q 011570 317 LIATMLSD-----DQF--VEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKE------QTYEAE 382 (483)
Q Consensus 317 ~~~~~l~~-----~~~--~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~------~~~~~~ 382 (483)
++..++.. +.+ ..++.++.++.++++++++.+.|+++ |+++.++++|+|+|++++..... .....+
T Consensus 359 a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~ 438 (498)
T 3ihj_A 359 AMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPD 438 (498)
T ss_dssp HHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHH
T ss_pred HHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcH
Confidence 99999875 111 12334667788999999999999998 99999999999999876421110 011123
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHC-PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~-~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..++..+++++||.+.||+.|+. .+++++|++++ .+++++++++++|++++++..+
T Consensus 439 ~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~-~~~e~l~~~i~~L~~~~~~~~~ 495 (498)
T 3ihj_A 439 MFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL-PPVEKLKTVLQKVKDFHINFLE 495 (498)
T ss_dssp HHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 23467788888999999999985 45679999997 7999999999999999988754
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=380.97 Aligned_cols=353 Identities=20% Similarity=0.342 Sum_probs=287.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+.++++++ ++.+.+++.+.... .....|++..|..+||+++|+++.+.+| +++++ ++|+
T Consensus 47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~~v~ 113 (404)
T 2o1b_A 47 LPLINMAVGIPDGPTPQGIIDHFQKALTI-----------PENQKYGAFHGKEAFKQAIVDFYQRQYN--VTLDKEDEVC 113 (404)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTC-----------HHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEE
T ss_pred CCEEecCCcCCCCCCCHHHHHHHHHHHhC-----------CCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCcccEE
Confidence 45899999998765 45566655442110 1235788878999999999999987777 44566 7999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+++++ ++|.+|++.|++++.. ++++|
T Consensus 114 ~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~-~~~~~d~~~l~~~l~~------~~~~v 185 (404)
T 2o1b_A 114 ILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLA-DGKPVPLNLEP-PHYLPDWSKVDSQIID------KTKLI 185 (404)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHT-TCEEEEEECCT-TTCCCCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHC-CCEEEEeccCc-ccCcCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999988876 99999999876 5678999999998864 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ . +.++..+.. ..+++++++||||.+|++
T Consensus 186 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~-~~~~~~~~~-----~~~~~i~~~s~sK~~g~~ 258 (404)
T 2o1b_A 186 YLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-K-NPSILASEN-----GKDVAIEIYSLSKGYNMS 258 (404)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-C-CCCGGGSTT-----HHHHEEEEEESTTTTTCG
T ss_pred EEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C-CCChhhcCC-----CCCCEEEEEecchhccCc
Confidence 999999999999999999999999999999999999999876654 2 234444321 125789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+..... .+.+++++|.++.+++... .+++++.++.++++++++.+.|++.|+++.++.
T Consensus 259 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 334 (404)
T 2o1b_A 259 GFRVGFAVG-NKDMIQALKKYQTHTNAGMFGALQDAAIYALNHY---DDFLEEQSNVFKTRRDRFEAMLAKADLPFVHAK 334 (404)
T ss_dssp GGCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCEECCC
T ss_pred hhheEeEec-CHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCC
Confidence 999999998 5666665554332 2457889999888888652 345778888899999999999998899988888
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|+|+|++++...+ ..+++..|++++||.+.||..|+...++++||+++. +++++++++++|++++++.
T Consensus 335 ~g~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~~ 403 (404)
T 2o1b_A 335 GGIYVWLETPPGYD------SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYLY 403 (404)
T ss_dssp BSSEEEEECCTTCC------HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGGG
T ss_pred cceEEEEeCCCCCC------HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999974321 236788888777999999998875456899999985 7889999999999877543
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=384.60 Aligned_cols=364 Identities=19% Similarity=0.335 Sum_probs=293.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+.+++.++ ++.+.+++.+.... ......|++..|..++|+++++++++.+| +++++ ++|+
T Consensus 28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~----------~~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~~i~ 95 (422)
T 3fvs_A 28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 95 (422)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCceEeCCCCCCCCCCHHHHHHHHHHHhC----------CCccCCCCCCCCCHHHHHHHHHHHHHhhC--CCCCCCCcEE
Confidence 36799999998764 45555555431100 01246799888999999999999998887 45677 6999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC----------CCCcccCHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS----------SNDFKVTMEALEAAYEKA 193 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~----------~~~~~~d~~~l~~~i~~~ 193 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++. +.+|.+|++.|++++++
T Consensus 96 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~- 173 (422)
T 3fvs_A 96 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS- 173 (422)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-
T ss_pred EECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHc-CCEEEEEecccccccccccccccCCCCCHHHHHhhcCC-
Confidence 9999999999999999999999999999999999988876 99999999875 23688999999988753
Q ss_pred HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 194 QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+.. ..++++++
T Consensus 174 -----~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~ 242 (422)
T 3fvs_A 174 -----RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG-HQHISIASLPG-----MWERTLTI 242 (422)
T ss_dssp -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----TGGGEEEE
T ss_pred -----CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCChhhccc-----ccCcEEEE
Confidence 78999999999999999999999999999999999999999999988876 55556665533 34789999
Q ss_pred ecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChh----HHHHHHHHHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQ----FVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~l~ 347 (483)
+|+||.+|++|+|+||+++ ++.+.+.+..... .+.++++.|.++..++.... ...+++++.++.++++++++.
T Consensus 243 ~S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLG-PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI 321 (422)
T ss_dssp EEHHHHHTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEe-CHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 4555555544332 35578899998888876310 013456778889999999999
Q ss_pred HhhhcCCceeecCCceEEEeeecCchhhccC-------hHHHHHHHHHHHHhcCeEeeCCCCCCC-----CCCCEEEEEe
Q 011570 348 WGLSQVGIGCLKSNAGLFLWMDLHHLLKEQT-------YEAEMALWRVIINEVKLNVSPGSSFHC-----PNPGWFRVCF 415 (483)
Q Consensus 348 ~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~-------~~~~~~~~~~Ll~~~gV~v~pg~~f~~-----~~~~~iRis~ 415 (483)
+.|++.|+++..+.+|+|+|++++....... .....+++..+++++||.+.||+.|+. .+.+++||++
T Consensus 322 ~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~ 401 (422)
T 3fvs_A 322 RSLQSVGLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF 401 (422)
T ss_dssp HHHHTTTCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC
T ss_pred HHHHHcCCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEe
Confidence 9999999999999999999999875321000 000347788888888999999998863 3468999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHH
Q 011570 416 ANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 416 ~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+. +++++++++++|++++++
T Consensus 402 ~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 402 VK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CC-CHHHHHHHHHHHHHHHHC
T ss_pred cC-CHHHHHHHHHHHHHHHhh
Confidence 85 999999999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=380.70 Aligned_cols=359 Identities=21% Similarity=0.333 Sum_probs=290.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+.+++.++ ++.+.+++.+.... .....|++..|..++|+++|+++++.+| .++++ ++|+
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~l~~~la~~~~~~~~--~~~~~~~~i~ 89 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFI-----------DNMNQYTRGFGHPALVKALSCLYGKIYQ--RQIDPNEEIL 89 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTC-----------GGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhC-----------ccccCCCCCCChHHHHHHHHHHHHHHhC--CCCCCCCCEE
Confidence 47899999998765 45555555442110 1345798888999999999999998887 55677 8999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC---------CCCcccCHHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS---------SNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~---------~~~~~~d~~~l~~~i~~~~ 194 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...+... |.+++.++++. +.+|.+|++++++++.+
T Consensus 90 ~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-- 166 (410)
T 3e2y_A 90 VAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMA-GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-- 166 (410)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT--
T ss_pred EeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEeccccccccccccccCCcCCHHHHHhhcCC--
Confidence 9999999999999999999999999999999999988886 99999999862 24678999999988753
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+.. ..+++++++
T Consensus 167 ----~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~ 236 (410)
T 3e2y_A 167 ----KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTG-HTHVKIATLPG-----MWERTITIG 236 (410)
T ss_dssp ----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----CGGGEEEEE
T ss_pred ----CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCC-CCCCCHHHcCC-----ccCeEEEEe
Confidence 78999999999999999999999999999999999999999999988776 55556665533 347899999
Q ss_pred cCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDD----QFVEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~----~~~~~~~~~~~~~l~~~~~~l~~ 348 (483)
||||.+|++|+|+||+++ ++.+.+.+..... .+.+++++|.++..++.+. ....+++++.++.++++++++.+
T Consensus 237 S~sK~~g~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 315 (410)
T 3e2y_A 237 SAGKTFSVTGWKLGWSIG-PAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVR 315 (410)
T ss_dssp EHHHHSSCGGGCCEEEEC-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCceEEEEEE-CHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5556555554433 3557889999888887530 00134567788889999999999
Q ss_pred hhhcCCceeecCCceEEEeeecCchhhcc-----ChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----CCCEEEEEeccC
Q 011570 349 GLSQVGIGCLKSNAGLFLWMDLHHLLKEQ-----TYEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCFANM 418 (483)
Q Consensus 349 ~L~~~gi~~~~~~~g~f~~~~l~~~~~~~-----~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----~~~~iRis~~~~ 418 (483)
.|+++|+.+..+.+|+|+|++++...... ......+++..+++++||.+.||+.|+.. +.+++||+++.
T Consensus 316 ~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~- 394 (410)
T 3e2y_A 316 LLNSVGLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK- 394 (410)
T ss_dssp HHHTTTCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC-
T ss_pred HHHHCCCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC-
Confidence 99999999999999999999987532110 00123477888888889999999988653 35799999984
Q ss_pred CHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITS 432 (483)
Q Consensus 419 ~~e~l~~~l~~L~~ 432 (483)
+++++++++++|++
T Consensus 395 ~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 395 KDSTLDAAEEIFRA 408 (410)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=373.99 Aligned_cols=349 Identities=21% Similarity=0.346 Sum_probs=280.0
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.++++++ ++.+.+++.+... .....|++..|..++|+++++++++.+| +++++++|+
T Consensus 30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~v~ 95 (391)
T 3h14_A 30 GRRIIHMEVGQPGTGAPRGAVEALAKSLE------------TDALGYTVALGLPALRQRIARLYGEWYG--VDLDPGRVV 95 (391)
T ss_dssp TCCCEECCCSSCSSCSCHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCChHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 357899999998876 4545555543111 1235788888999999999999998887 557889999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++++++|.+|++.|+++ ++++|
T Consensus 96 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~---------~~~~v 165 (391)
T 3h14_A 96 ITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRAL-GLVPVDLPTAPENRLQPVPADFAGL---------DLAGL 165 (391)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECCGGGTTSCCHHHHTTS---------CCSEE
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCcccCCCCCHHHHHhc---------CCeEE
Confidence 9999999999999999999999999999999999988886 9999999998777889999988764 57899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ . ..+...+ .+++++++|+||.+|++
T Consensus 166 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~-~~~~~~~--------~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 166 MVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEA-K-AVTALEL--------TDECYVINSFSKYFSMT 235 (391)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C-CCCGGGT--------CSSSEEEEESSSTTCCT
T ss_pred EECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCC-C-CcChhhc--------CCCEEEEEechhccCCc
Confidence 999999999999999999999999999999999999999887765 3 2343332 36789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee-ecC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC-LKS 360 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~-~~~ 360 (483)
|+|+||++++ +.+.+.+...... +.+++++|.++.+++... +++++.+++++++++.+.+.|+++|+.. ..+
T Consensus 236 G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 310 (391)
T 3h14_A 236 GWRVGWMVVP-EDQVRVVERIAQNMFICAPHASQVAALAALDCD----AELQANLDVYKANRKLMLERLPKAGFTRIAPP 310 (391)
T ss_dssp TSCCEEEECC-GGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCC
T ss_pred cceeEEEEeC-HHHHHHHHHHHhhhccCCCHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 9999999995 4455555443332 457888998888888743 4567788889999999999998887654 578
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-PNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+++|+|++++.... +..+++..|++++||.++||+.|+. ..++++||+++. +++++++++++|++++++..
T Consensus 311 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~~~~~~ 383 (391)
T 3h14_A 311 DGAFYVYADVSDLTD-----DSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEAFMQARG 383 (391)
T ss_dssp CBTTEEEEECTTTCS-----CHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHHC-
T ss_pred CeeEEEEEecCccCC-----CHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhc
Confidence 888999999975211 1337888888878999999999986 356799999985 88999999999999988664
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=377.98 Aligned_cols=360 Identities=17% Similarity=0.314 Sum_probs=291.6
Q ss_pred CCCcccccchhhh-----hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLAENL-----LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~~n~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
..++|+|+.+.+. .+++.+.+++.+.... .....|++..|..++|+++|++++.. + .++++
T Consensus 53 ~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~-~--~~~~~ 118 (427)
T 3dyd_A 53 NKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDS-----------GKYNGYAPSIGFLSSREEIASYYHCP-E--APLEA 118 (427)
T ss_dssp TSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHH-----------CCSSSCCCTTCCHHHHHHHHHHHCBT-T--BCCCG
T ss_pred CCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhc-----------CcCCCCCCCCCcHHHHHHHHHHHhhc-C--CCCCh
Confidence 3567999998753 2345555555431100 12357988889999999999999864 4 55788
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++++++|.+|++.+++++++ +
T Consensus 119 ~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~------~ 191 (427)
T 3dyd_A 119 KDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESM-GIEVKLYNLLPEKSWEIDLKQLEYLIDE------K 191 (427)
T ss_dssp GGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHSSCCT------T
T ss_pred HHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecccccCCCCCHHHHHHHhcc------C
Confidence 99999999999999999999999999999999999999888886 9999999998777889999999988753 6
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
+++|++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+.. ..++++++||||.
T Consensus 192 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g-~~~~~~~~~~~------~~~vi~~~S~sK~ 264 (427)
T 3dyd_A 192 TACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSD-CKYEPLATLST------DVPILSCGGLAKR 264 (427)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSS-CCCCCGGGGCS------SCCEEEEEESTTT
T ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCC-CcCccHHHhCC------CCcEEEEeecccc
Confidence 8999999999999999999999999999999999999999999987776 55556555532 3568899999999
Q ss_pred cCCCCceEEEEEecC------hHHHHHHHHhh-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011570 280 MGFPGFRVGIIYSYN------DQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ 352 (483)
Q Consensus 280 ~g~~GlRiG~li~~~------~~l~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 352 (483)
||++|+|+||+++++ +.+.+.+.... ..+..++++|.++.+++.... .+++++.+++++++++++.+.|++
T Consensus 265 ~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~~~--~~~~~~~~~~~~~~~~~l~~~L~~ 342 (427)
T 3dyd_A 265 WLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRTP--GEFYHNTLSFLKSNADLCYGALAA 342 (427)
T ss_dssp SSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999965 35555554432 345688999999998887321 344677788889999999999998
Q ss_pred C-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011570 353 V-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 353 ~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
+ |+.+..|.+|+|+|++++...... .....+++..|++++||.+.||..|+. ++++||+++ .+++++++++++|+
T Consensus 343 ~~g~~~~~p~~g~~~~~~l~~~~~~~-~~~~~~~~~~l~~~~gV~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~l~ 418 (427)
T 3dyd_A 343 IPGLRPVRPSGAMYLMVGIEMEHFPE-FENDVEFTERLVAEQSVHCLPATCFEY--PNFIRVVIT-VPEVMMLEACSRIQ 418 (427)
T ss_dssp STTEEEECCSBTTEEEEEECGGGCTT-CSSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEESC-SCHHHHHHHHHHHH
T ss_pred CCCceecCCCeeEEEEEecCHhhcCC-CCCHHHHHHHHHHHCCEEEECCcccCC--CCeEEEEEC-CCHHHHHHHHHHHH
Confidence 8 899888999999999887321100 012347888888778999999998863 689999998 69999999999999
Q ss_pred HHHHHhh
Q 011570 432 SFMLKNV 438 (483)
Q Consensus 432 ~~l~~~~ 438 (483)
+++++.+
T Consensus 419 ~~l~~~~ 425 (427)
T 3dyd_A 419 EFCEQHY 425 (427)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=371.68 Aligned_cols=347 Identities=17% Similarity=0.270 Sum_probs=281.5
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|||+.++++++ ++.+.+++.+.... .....|++..|..+||+++|+++.+.+| ++++++ +|+
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~~l~~~ia~~~~~~~g--~~~~~~~~v~ 91 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALND-----------PTTYGYCLKSCTLPFLEEAARWYEGRYG--VGLDPRREAL 91 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTC-----------GGGSSCCCHHHHHHHHHHHHHHHHHHHS--CCCCTTTSEE
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhC-----------CCcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCccEE
Confidence 46799999988764 45566655442110 1245787766889999999999987777 445676 999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.+|+ +.+|.+|++.+++++.. ++++|
T Consensus 92 ~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~--~~~~~~d~~~l~~~l~~------~~~~v 162 (376)
T 2dou_A 92 ALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVA-SLRTFLIPL--REDGLADLKAVPEGVWR------EAKVL 162 (376)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHT-TCEEEEECB--CTTSSBCGGGSCHHHHH------HEEEE
T ss_pred EcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHc-CCEEEEeeC--CCCCCCCHHHHHHhhcc------CceEE
Confidence 9999999999999999999999999999999999988876 999999998 34678999999998864 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ . ..++..+.. ..+++++++||||.+|++
T Consensus 163 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~-~~~~~~~~~-----~~~~~i~~~s~sK~~~~~ 235 (376)
T 2dou_A 163 LLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-E-APSPLALPG-----AKERVVELFSLSKSYNLA 235 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-C-CCCGGGSTT-----GGGTEEEEEEHHHHHTCG
T ss_pred EECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C-CCChhhcCC-----CCCcEEEEecchhhcCCh
Confidence 999999999999999999999999999999999999999876654 2 234333322 236789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+...... ..+++++|.++..++... .+++++.++.++++++++.+.|.++ +++.++.
T Consensus 236 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 310 (376)
T 2dou_A 236 GFRLGFALG-SEEALARLERVKGVIDFNQYAGVLRMGVEALKTP---KEVVRGYARVYRERALGMAEALKGV-LSLLPPR 310 (376)
T ss_dssp GGCCEEEEE-CHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHTTT-SEECCCC
T ss_pred hheeEEEec-CHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHHHHHHh-cCccCCC
Confidence 999999998 56666665544332 347889999998888762 3457788888999999999999988 8888888
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+|+|+|++++...+ ..++...|+++ ||.+.||..|+...++++||+++. +++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 311 ATMYLWGRLPEGVD------DLEFGLRLVER-GVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp BSSEEEEECCTTCC------HHHHHHHHHHT-TEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred eeEEEEEECCCCCC------HHHHHHHHHHC-CEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 89999999975322 23678888866 999999998875456899999984 8999999999998764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=373.01 Aligned_cols=349 Identities=19% Similarity=0.285 Sum_probs=282.3
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~i 124 (483)
++|+|+.+.+.++ ++.+.+++.+... .....|++..|..+||+++++++.+.+| .+++++ +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~~ 96 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDITV 96 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHH------------hhccCCCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCEEE
Confidence 5789999987654 4555555543100 0135788888899999999999988776 456788 9999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++ +|.+|+++|++++. .++++|+
T Consensus 97 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~------~~~~~v~ 168 (386)
T 1u08_A 97 TAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQPP-HFRVDWQEFAALLS------ERTRLVI 168 (386)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCTT-TCCCCHHHHHHHCC------TTEEEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeecCcc-cCcCCHHHHHHhhc------ccCEEEE
Confidence 999999999999999999999999999999999988876 999999998754 57899999999885 2789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.++|.+++++|+++|+++|++||+||+|.++.|++ ..+.++..+.. ..+++++++|+||.+|++|
T Consensus 169 l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G 242 (386)
T 1u08_A 169 LNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQ-QGHASVLAHPQ-----LRERAVAVSSFGKTYHMTG 242 (386)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCS-SCCCCGGGSHH-----HHTTEEEEEEHHHHTTCGG
T ss_pred EeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCC-CCCcChhcccC-----ccCcEEEEecchhhcCCcc
Confidence 99999999999999999999999999999999999999887765 43445544421 1368899999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||++++ +.+.+.+..... .+.+++++|.++..++... .+++++.+++++++++++.+.|++.|+++..+.+
T Consensus 243 ~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 318 (386)
T 1u08_A 243 WKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCEG 318 (386)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCCB
T ss_pred cceEEEEcC-HHHHHHHHHHHHhhccCCChHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHCCCeecCCCc
Confidence 999999994 666665554332 3457888888888887642 3456778888999999999999998999888888
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~--~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
|+|+|++++.... .+..+++..|++++||.+.||..|+. ..++++||+++ .+++++++++++|++
T Consensus 319 g~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~-~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 319 TYFLLVDYSAVST----LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA-KKESTLLAAAERLRQ 385 (386)
T ss_dssp SSEEEEECTTTCC----SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC-SCHHHHHHHHHHHTT
T ss_pred eEEEEEecCCCCC----CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc-CCHHHHHHHHHHHhh
Confidence 9999999975300 01236788888778999999988864 24679999998 489999999999864
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-45 Score=374.52 Aligned_cols=329 Identities=17% Similarity=0.245 Sum_probs=267.3
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC-------CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD-------PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD 159 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~-------~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~ 159 (483)
..+|++..|+++||++|++++.+.+| ++.+ +++|++|+|+++++..++.++++|||+|++++|+|..+...
T Consensus 71 ~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 71 ALQYSPSAGIPELLSWLKQLQIKLHN--PPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp HTSCCCTTCCHHHHHHHHHHHHHHHC--CTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcC--CCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH
Confidence 45799999999999999999988877 3332 37999999999999999999999999999999999999998
Q ss_pred HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH------hcCCceeEEEE-eCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 160 LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ------ESNIRIKGVLI-TNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 160 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~------~~~~~~~~i~l-~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
++.. |.+++.++++++ .+|++.|+++++++. ..+.++++|++ ++||||||.+++.+++++|+++|++||
T Consensus 149 ~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~ 224 (425)
T 2r2n_A 149 LHPL-GCNIINVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYD 224 (425)
T ss_dssp HGGG-TCEEEEECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHc-CCEEEEeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcC
Confidence 8876 999999998653 489999999886321 00135788866 689999999999999999999999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCC
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLV 310 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~ 310 (483)
++||+||+|.++.|++ ..+.++.++. ..+++++++||||+++ +|+|+||++++ +.+.+.+..... .+.+
T Consensus 225 ~~li~De~~~~~~~~g-~~~~~~~~~~------~~~~~i~~~s~SK~~~-~GlRiG~~~~~-~~l~~~l~~~~~~~~~~~ 295 (425)
T 2r2n_A 225 FLIIEDDPYYFLQFNK-FRVPTFLSMD------VDGRVIRADSFSKIIS-SGLRIGFLTGP-KPLIERVILHIQVSTLHP 295 (425)
T ss_dssp CEEEEECTTGGGBSSS-SCCCCTGGGC------TTSCEEEEEESTTTTC-STTCCEEEEEE-HHHHHHHHHHHHTTTCSS
T ss_pred CEEEEECCcccccCCC-CCCCCccccC------CCCCEEEEccchhhcc-CccceEEEecC-HHHHHHHHHHHHHhcCCC
Confidence 9999999999887876 4445665553 2468999999999998 99999999995 556655544332 2557
Q ss_pred ChHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cc-eeecCCceEEEeeecCchhhccChHHHHHH
Q 011570 311 SSQTQHLIATMLSDD--QFVEKFIAESAKRIAERHKAFTWGLSQV--GI-GCLKSNAGLFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 311 s~~~q~~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi-~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
++++|.++..++... +.+.+++++.++.++++++++.+.|++. |+ .+..|.+|+|+|++++...+. .++
T Consensus 296 ~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~------~~~ 369 (425)
T 2r2n_A 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDV------KEL 369 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCC------HHH
T ss_pred CHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCH------HHH
Confidence 899999999888751 2235778888999999999999999874 76 566788999999999853221 143
Q ss_pred HHHHHHhcCeEeeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+...+.++||.+.||+.|+.. ..+++||+++..+++++++++++|++++++
T Consensus 370 ~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 370 IEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp HHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 333445779999999998754 357999999856999999999999998865
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=374.15 Aligned_cols=357 Identities=16% Similarity=0.207 Sum_probs=287.5
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++++|+.++++++ ++.+.+++.+... .....|++. ..++|+++++++.+.+| +++++++|+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~ 93 (399)
T 1c7n_A 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTGP--TEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (399)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCceeeeecCCCCCCCHHHHHHHHHHHh------------cCCCCCCCC--cHHHHHHHHHHHHHHhC--CCCChhhEE
Confidence 357899999988764 4555555543110 123567764 79999999999987776 446788999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...+... |.+++.+|++ ++++|.+|++.|++++++ .++++
T Consensus 94 ~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~ 167 (399)
T 1c7n_A 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (399)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEecccccCCCCEEEcHHHHHHHhcc-----CCCcE
Confidence 9999999999999999999999999999999999988875 9999999986 334678999999999862 27899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+... ..++++++.|+||.+|+
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~ 242 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPG-YEHTVFQSIDEQ----LADKTITFTAPSKTFNI 242 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTT-CCCCCGGGSCHH----HHTTEEEEECSHHHHTC
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCcccHHHcCcc----ccCcEEEEEeChhhccc
Confidence 9999999999999999999999999999999999999999887765 444455444210 02678999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc---CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Ccee
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF---GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGC 357 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~ 357 (483)
+|+|+||++++++.+.+.+...... ..+++++|.++.+++... .+++++.++.++++++++.+.|++ + |+.+
T Consensus 243 ~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 319 (399)
T 1c7n_A 243 AGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC---GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKA 319 (399)
T ss_dssp GGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSBC
T ss_pred cchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHhhCCCCeE
Confidence 9999999999656666665554332 256888998888777642 345777888899999999999988 6 8888
Q ss_pred ecCCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
.++.+++++|++++.. .+ ..+++..|++++||.+.||..|+...++++||+++. +++++++++++|++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 320 PLIEGTYLQWIDFRALKMD------HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKD 392 (399)
T ss_dssp CCCSBSSEEEEECGGGCCC------HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred ecCCceEEEEEEcccCCCC------HHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHH
Confidence 8899999999999742 11 236788887678999999998875557899999984 689999999999999987
Q ss_pred hh
Q 011570 437 NV 438 (483)
Q Consensus 437 ~~ 438 (483)
.+
T Consensus 393 ~~ 394 (399)
T 1c7n_A 393 LK 394 (399)
T ss_dssp HC
T ss_pred HH
Confidence 64
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-45 Score=365.21 Aligned_cols=344 Identities=15% Similarity=0.191 Sum_probs=281.2
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++|||+.++++++ ++.+.+++.+.. .....|++..|..++|+++|+++.+.+| +++++++|++|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~t 88 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHT-------------HSLNIYPKSAFEESLRAAQRGFFKRRFK--IELKENELIST 88 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTG-------------GGGGSCCCTTCCHHHHHHHHHHHHHHHS--CCCCGGGEEEE
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhh-------------hhcCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEEC
Confidence 7899999998875 566667665521 2456899888999999999999988877 44588999999
Q ss_pred CChhHHHHHHHHHhcCC--CCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 126 GGATGAHETVAFCLADP--GDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~--gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+++++..++.+++++ ||+|+++.|+|..+...++.. |.+++.+++++++++.+ .+++++.+ ++++|
T Consensus 89 ~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~---~l~~~~~~------~~~~v 158 (376)
T 3ezs_A 89 LGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI-KAKSLLMPLTKENDFTP---SLNEKELQ------EVDLV 158 (376)
T ss_dssp SSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTSCC---CCCHHHHH------HCSEE
T ss_pred cCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHc-CCEEEEcccCCCCCcch---hHHhhhcc------CCCEE
Confidence 99999999999999999 999999999999999988876 99999999987655544 56666654 68899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++ . +.++......+.....+++++++||||.+|++
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENT-P-PPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-C-CCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-C-CCCHHHccccccccccCcEEEEecchhccCCc
Confidence 999999999999999999999999999999999999999977765 3 34554432100000247899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+..... .+.+++++|.++.+++...++ +++.+++++++++++.+.|+ ++. .+.
T Consensus 237 G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~l~--~~~--~~~ 307 (376)
T 3ezs_A 237 GLRSGFIAG-DSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRH----AEFFRNIYANNLKLARKIFK--NTL--IYP 307 (376)
T ss_dssp GGCCEEEEE-CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHH----HHHHHHHHHHHHHHHHHHST--TCC--CCS
T ss_pred cceeEEEee-CHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHhc--CCC--CCC
Confidence 999999998 5666666655443 245788999998888877543 67778889999999999998 665 678
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC--CCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH--CPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~--~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+|+|+|++++. ..+++..|++++||.+.||+.|+ ...++++||+++. +++++++++++|++++++
T Consensus 308 ~~~~~~~~~~~---------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 308 YSFYVYLPVQN---------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp BSSEEEEECSC---------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHHHHHHHHHHHCC
T ss_pred cceEEEEECCC---------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 88999999972 23678888876799999999987 3456899999984 999999999999998754
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=370.73 Aligned_cols=354 Identities=18% Similarity=0.355 Sum_probs=285.6
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..++|+++++++++.+| +++++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 95 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcC--CCCChhhEEE
Confidence 46789999988764 4445554433100 0134688888999999999999998777 4467889999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++.+|.+|++.|++++++ ++++|+
T Consensus 96 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 168 (388)
T 1j32_A 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEE
Confidence 999999999999999999999999999999999888875 9999999987655788999999998853 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++|+||||.++|.+++++|+++|+++|+++|+||+|.++.+++ ..+.++..+..+ ..+++++++|+||.+|++|
T Consensus 169 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD-AQHLSIGAASPE----AYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSCHH----HHHTEEEEEESTTTTTCTT
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCCHHHcccc----ccCCEEEEeechhccCCcc
Confidence 99999999999999999999999999999999999999987765 444455444210 0257899999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||+++ ++.+.+.+..... .+.+++++|.++..++... .+++++.+++++++++++.+.|+++ |+++..+.
T Consensus 244 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 319 (388)
T 1j32_A 244 WRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319 (388)
T ss_dssp TCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC
T ss_pred cceEEEEe-CHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence 99999999 5556665554433 2457788888887777532 2346777888899999999999988 89888888
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
+++|+|++++.. . . +..+++..|++++||.+.||..|+. ++++||+++ .+++++++++++|++++++.
T Consensus 320 ~~~~~~~~~~~~-~-~---~~~~~~~~l~~~~gi~v~~g~~~~~--~~~iRis~~-~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 320 GAFYMFPSIAKT-G-R---SSLDFCSELLDQHQVATVPGAAFGA--DDCIRLSYA-TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGG-T-C---CHHHHHHHHHHHHCEECEEGGGGTC--TTBEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC-C-C---CHHHHHHHHHHhCCEEEeChhhhCC--CCcEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 999999988641 0 0 1336788888767999999988863 578999998 68999999999999988653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=377.43 Aligned_cols=363 Identities=18% Similarity=0.273 Sum_probs=288.1
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|+|+.+.+.++ ++.+.+++.+.... . ......|++..|..+||+++++++.+.+| .+++++ +|+
T Consensus 37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~~v~ 105 (429)
T 1yiz_A 37 YKPLNLGQGFPDYHAPKYALNALAAAANS-----P----DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVL 105 (429)
T ss_dssp HCCEECCSSSCSSCCCHHHHHHHHHHHTC-----S----CGGGGSCCCSSCCHHHHHHHHHHHHHHHT--SCCCTTTSEE
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhc-----c----ccCccCCCCCCCcHHHHHHHHHHHHHHhC--CCCCCcCCEE
Confidence 36789999987654 44555555431110 0 01245788888899999999999987776 456788 999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCC--------CcccCHHHHHHHHHHHHh
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSN--------DFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~ 195 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.+|++.+. +|.+|++.|++++.+
T Consensus 106 ~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--- 181 (429)
T 1yiz_A 106 VTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNE--- 181 (429)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCT---
T ss_pred EecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCcccccccccccCcccCHHHHHHHhcc---
Confidence 9999999999999999999999999999999999988875 9999999987643 578999999998852
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
++++|++++|+||||.++|.+++++|+++|++||++||+||+|.++.+++ ..+.++..+.. ..++++++.|
T Consensus 182 ---~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~~~~~~s 252 (429)
T 1yiz_A 182 ---KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP-FEHIRICTLPG-----MWERTITIGS 252 (429)
T ss_dssp ---TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-SCCCCGGGSTT-----TGGGEEEEEE
T ss_pred ---CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCC-CCCcChhhccC-----CcCceEEEec
Confidence 78999999999999999999999999999999999999999999987765 44445544421 2368899999
Q ss_pred CccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCC-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSD-----DQFVEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~-----~~~~~~~~~~~~~~l~~~~~~l~~ 348 (483)
+||.+|++|+|+||+++ ++.+.+.+..... .+.+++++|.++.++|.. ..+ .+++++.++.++++++++.+
T Consensus 253 ~sK~~~~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 330 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYG-PEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKRDYMAS 330 (429)
T ss_dssp HHHHHTCGGGCCEEEES-CHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHHHHHHH
T ss_pred chhccCCCCcceEEEEe-CHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 4666666554332 355788999888888765 211 34577788889999999999
Q ss_pred hhhcCCceeecCCceEEEeeecCchhh------ccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----CCCEEEEEecc
Q 011570 349 GLSQVGIGCLKSNAGLFLWMDLHHLLK------EQTYEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCFAN 417 (483)
Q Consensus 349 ~L~~~gi~~~~~~~g~f~~~~l~~~~~------~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----~~~~iRis~~~ 417 (483)
.|.++|+++..+.+|+|+|++++.... .....+..+++..|++++||.+.||..|+.. .++++||+++
T Consensus 331 ~L~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~- 409 (429)
T 1yiz_A 331 FLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF- 409 (429)
T ss_dssp HHHHHTCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC-
T ss_pred HHHhCCCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec-
Confidence 998889998888889999999975310 0000123477888887789999999888642 2679999998
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 011570 418 MDDRTMEIALSRITSFML 435 (483)
Q Consensus 418 ~~~e~l~~~l~~L~~~l~ 435 (483)
.+++++++++++|+++++
T Consensus 410 ~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 410 KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp SCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 489999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=372.86 Aligned_cols=363 Identities=21% Similarity=0.359 Sum_probs=284.5
Q ss_pred CCCCcccccchhhh----h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhh------hC
Q 011570 44 NPNGVIQMGLAENL----L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKV------RG 112 (483)
Q Consensus 44 ~~~~~i~l~~~~n~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~------~g 112 (483)
++.++|+|+.+.+. + +++.+.+++.+... . .....|++..|..+||+++|+++++. .|
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~ 99 (416)
T 1bw0_A 31 SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAID----------S-QECNGYFPTVGSPEAREAVATWWRNSFVHKEELK 99 (416)
T ss_dssp SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHH----------T-TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTG
T ss_pred cCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhh----------C-CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCC
Confidence 34678999988742 2 34555555543110 0 12357888889999999999999832 33
Q ss_pred CCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 113 NRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 113 ~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
+++++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++.+|.+|++.|++++.+
T Consensus 100 --~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 100 --STIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRLKDD 176 (416)
T ss_dssp --GGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred --CCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHc-CcEEEEeecCcccCCCCCHHHHHHHhcc
Confidence 5567899999999999999999999999999999999999999888875 9999999987655688999999998753
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC----CcchHHHhhhhccccCCC
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES----SFVSIAEIIDQDIACNRN 268 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~----~~~s~~~l~~~~~~~~~~ 268 (483)
++++|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.|++ . .+.++..+. ..+
T Consensus 177 ------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~------~~~ 243 (416)
T 1bw0_A 177 ------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG-KDPNATFTSVADFE------TTV 243 (416)
T ss_dssp ------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS-SCTTCCCCCTTSSC------CSC
T ss_pred ------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCCCccCHHHcc------CCC
Confidence 68899999999999999999999999999999999999999999977765 3 344444332 234
Q ss_pred eEEEEecCccccCCCCceEEEEEecCh-----HHHHHHHHhh-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHH
Q 011570 269 LIHIVYSLSKDMGFPGFRVGIIYSYND-----QVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAER 342 (483)
Q Consensus 269 ~vi~~~S~SK~~g~~GlRiG~li~~~~-----~l~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~ 342 (483)
++++++||||.|+++|+|+||++++++ .+........ ..+.+++++|.++.+++.... ..++++.+++++++
T Consensus 244 ~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~ 321 (416)
T 1bw0_A 244 PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEES 321 (416)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHH
T ss_pred cEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 689999999999999999999999664 2332222222 235588899999988887422 33467777888999
Q ss_pred HHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHH
Q 011570 343 HKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR 421 (483)
Q Consensus 343 ~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e 421 (483)
++++.+.|+++ |+.+..+.+|+|+|++++..... ...+..+++..|++++||.++||..|+. ++++||+++ .+++
T Consensus 322 ~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~f~~--~~~iRis~~-~~~e 397 (416)
T 1bw0_A 322 AMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYR-DIKTDVEFFEKLLEEENVQVLPGTIFHA--PGFTRLTTT-RPVE 397 (416)
T ss_dssp HHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBS-SCCSHHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECC-SCHH
T ss_pred HHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcC-CCCCHHHHHHHHHHHCCEEEecccccCC--CCeEEEEec-CCHH
Confidence 99999999988 88888788889999988642000 0011346788887778999999998863 579999997 6899
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011570 422 TMEIALSRITSFMLKNVE 439 (483)
Q Consensus 422 ~l~~~l~~L~~~l~~~~~ 439 (483)
++++++++|.+++++.++
T Consensus 398 ~l~~~l~~l~~~l~~~~~ 415 (416)
T 1bw0_A 398 VYREAVERIKAFCQRHAA 415 (416)
T ss_dssp HHHHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999987654
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=368.88 Aligned_cols=356 Identities=17% Similarity=0.218 Sum_probs=292.1
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++.+... .....|++. ..++++++++++.+.+| +++++++|++
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~i~~ 90 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLK------------VAAFGYESV--PAEYYKAVADWEEIEHR--ARPKEDWCVF 90 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHT------------TCCCCCBCC--CHHHHHHHHHHHHHHHS--CCCCGGGEEE
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHh------------cCcCCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 47899999987775 4555565544111 123467665 69999999999998887 4578899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++ ++++|.+|++.|++++++ .++++|
T Consensus 91 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-----~~~~~v 164 (391)
T 3dzz_A 91 ASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGN-GRRVISSDLIYENSKYSVNWADLEEKLAT-----PSVRMM 164 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHT-TCEEEECCCEEETTEEECCHHHHHHHHTS-----TTEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHc-CCEEEEeeeeecCCceeecHHHHHHHHhc-----cCceEE
Confidence 999999999999999999999999999999999988876 9999999986 456788999999999863 378999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|++||+++|+||+|.++.+.+ ..+.++..+... ..++++++.|+||.+|++
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~----~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTD-EDITPAFTVDWD----AKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCCGGGSCTT----TGGGEEEEECSHHHHTCT
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCC-CCceehhhcCcc----ccCcEEEEEeChhhcccc
Confidence 999999999999999999999999999999999999999887765 455566555320 146899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhh---hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Cceee
Q 011570 284 GFRVGIIYSYNDQVVSCARKMS---SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGCL 358 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~~ 358 (483)
|+|+||++++++.+.+.+.... ..+..+++++.++..++... .+++++.+++++++++++.+.|++ + |+++.
T Consensus 240 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 316 (391)
T 3dzz_A 240 ALHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG---HDWLRELKQVLRDNFAYAREFLAKEVPEVKVL 316 (391)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEC
T ss_pred chhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe
Confidence 9999999996577776665542 23457888888887777542 345777888899999999999998 4 89999
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+.+++++|++++.... ...++.+.|++++||.++||+.|+..+++++||+++ .+++++++++++|++++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 317 DSNASYLAWVDISALGM-----NAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLA-CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp CCCBSSEEEEECGGGCS-----CHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECC-SCHHHHHHHHHHHHHHHHTC
T ss_pred ccCceEEEEEehhhcCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999975210 133778888767799999999998766789999998 68999999999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=369.57 Aligned_cols=347 Identities=21% Similarity=0.415 Sum_probs=277.2
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+.+.++ ++.+.+++.+.... . .......|++..|..+||+++++++.+.+| +++++++|++
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~------~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~i~~ 104 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTD------Y--DSVALHGYTSAQGDVETRAAIAEFLNNTHG--THFNADNLYM 104 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHH------S--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhc------C--CccccCCcCCCCCcHHHHHHHHHHHHHHhC--CCCChHHEEE
Confidence 46789999876553 45555555431000 0 001146798888999999999999998887 5578999999
Q ss_pred eCChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++| |+|+++.|+|..+...++.. |.+++.+|++++ +|.+|+++|++++.+ ++++|
T Consensus 105 ~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v 176 (398)
T 3ele_A 105 TMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAA-GARLVEVPADTE-HFQIDFDALEERINA------HTRGV 176 (398)
T ss_dssp ESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHc-CCEEEEEecCCc-CCcCCHHHHHHHhCc------CCCEE
Confidence 9999999999999999999 99999999999999988876 999999998753 688999999998853 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhh------cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINE------KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~------~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
++++||||||.+++.+++++|+++|++ +|++||+||+|.++.+++ ........ ..+++++++|+|
T Consensus 177 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~--------~~~~~i~~~s~s 247 (398)
T 3ele_A 177 IINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDG-IKVPFVTK--------YYDNTLVCYSYS 247 (398)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTT-CCCCCGGG--------TCSSEEEEEEST
T ss_pred EEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCC-CCcCChHh--------hcCCeEEEEehh
Confidence 999999999999999999999999999 999999999999987765 33333222 247889999999
Q ss_pred cccCCCCceEEEEEecChH-----HHHHHHHhh---hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 011570 278 KDMGFPGFRVGIIYSYNDQ-----VVSCARKMS---SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWG 349 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~-----l~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~ 349 (483)
|.+|++|+|+||++++++. +...+.... ....++.++|.++..++.+.. .++.++++++++.+.
T Consensus 248 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--------~~~~~~~~~~~l~~~ 319 (398)
T 3ele_A 248 KSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG--------DINAYKENRDLLYEG 319 (398)
T ss_dssp TTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC--------CHHHHHHHHHHHHHH
T ss_pred hcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHH
Confidence 9999999999999996552 233322221 234467788888888887643 234567778888888
Q ss_pred hhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHH
Q 011570 350 LSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 350 L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
|+++|+++..+.+|+|+|++++.. + ..++++.| .++||.++||..|+. ++++||+++ .+++++++++++
T Consensus 320 L~~~g~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l-~~~gi~v~~g~~~~~--~~~iRis~~-~~~e~i~~~l~~ 388 (398)
T 3ele_A 320 LTRIGYHCFKPDGAFYMFVKALED-D------SNAFCEKA-KEEDVLIVAADGFGC--PGWVRISYC-VDREMIKHSMPA 388 (398)
T ss_dssp HHHHTCCEECCSBSSEEEEECSSS-C------HHHHHHHH-HTTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHH
T ss_pred HHHcCCeecCCCeeEEEEEEcCCC-C------HHHHHHHH-HHCCEEEeCccccCC--CCeEEEEec-CCHHHHHHHHHH
Confidence 888899999999999999999742 1 23566655 467999999998864 679999998 699999999999
Q ss_pred HHHHHHHhh
Q 011570 430 ITSFMLKNV 438 (483)
Q Consensus 430 L~~~l~~~~ 438 (483)
|++++++.+
T Consensus 389 l~~~l~~~~ 397 (398)
T 3ele_A 389 FEKIYKKYN 397 (398)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998753
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=378.77 Aligned_cols=353 Identities=19% Similarity=0.254 Sum_probs=282.2
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.++++++ ++.+.+++.+.... .........|++..|..+||+++++++. +| +.+++++|+
T Consensus 68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g--~~~~~~~i~ 136 (449)
T 3qgu_A 68 DAKIISLGIGDTTEPLPKYIADAMAKAAAG-------LATREGYSGYGAEQGQGALREAVASTFY--GH--AGRAADEIF 136 (449)
T ss_dssp TCCCEECSSCCCCCCCCHHHHHHHHHHHHG-------GGGSCCCCCSTTTTCCHHHHHHHHHHHH--TT--TTCCGGGEE
T ss_pred CCCEEEeeCCCCCCCCCHHHHHHHHHHHHh-------hccccCCCCCCCCCCcHHHHHHHHHHHH--cC--CCCCHHHEE
Confidence 346899999988775 44455544431100 0000234579888899999999999997 44 457889999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE----------EEEeecCCCCCcccCHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ----------LVPVVCDSSNDFKVTMEALEAAYEKA 193 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~----------~~~v~~~~~~~~~~d~~~l~~~i~~~ 193 (483)
+|+|+++++..+ .+++++||.|++++|+|..+...++.. |.+ ++.+++++++++..|++.+
T Consensus 137 ~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMM-GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp EESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHH-TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred EccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHc-CCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 999999999999 888999999999999999999998886 988 9999998776777776432
Q ss_pred HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 194 QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
+++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ....++..+.. ..++++++
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~ 277 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNP-DCPKTIYEIPG-----ADEVAIET 277 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCT-TSCSSGGGSTT-----GGGTEEEE
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCC-CCCCCHhhccC-----CCCcEEEE
Confidence 378999999999999999999999999999999999999999999987765 44455555432 24678999
Q ss_pred ecCccccCCCCceEEEEEecChHHH-------HHHHHh--hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYSYNDQVV-------SCARKM--SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHK 344 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~~~~l~-------~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 344 (483)
.||||.+|++|+|+||++++++.+. ..+... ..++.+++++|.++.+++.+.. .+++++.+++++++++
T Consensus 278 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~ 355 (449)
T 3qgu_A 278 CSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG--LKEMNAMIKFYKENAQ 355 (449)
T ss_dssp EECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH--HHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHH
Confidence 9999999999999999999654332 122222 2234578899999998887633 3567888899999999
Q ss_pred HHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHH
Q 011570 345 AFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424 (483)
Q Consensus 345 ~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~ 424 (483)
++.+.|++.|+++..+.+++|+|++++ ..+ ..+++..|++++||.+.||..|+..+++++||++. .++++++
T Consensus 356 ~l~~~L~~~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~-~~~e~i~ 427 (449)
T 3qgu_A 356 ILKTTFTEMGFSVYGGDDAPYIWVGFP-GKP------SWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAF-GSRENIL 427 (449)
T ss_dssp HHHHHHHHTTCCEEESSSSSEEEEECT-TSC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-SCHHHHH
T ss_pred HHHHHHHHCCCeeeCCCCeeEEEEECC-CCC------HHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEec-CCHHHHH
Confidence 999999999999999988999999997 222 33788888988899999999998767889999986 4999999
Q ss_pred HHHHHHHHHHHHh
Q 011570 425 IALSRITSFMLKN 437 (483)
Q Consensus 425 ~~l~~L~~~l~~~ 437 (483)
+++++|++++++.
T Consensus 428 ~~l~~l~~~~~~~ 440 (449)
T 3qgu_A 428 EAVRRFKEAYGKR 440 (449)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=369.63 Aligned_cols=349 Identities=18% Similarity=0.254 Sum_probs=287.4
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|||+.++++++ ++.+.+++.+... .....|++ .| .++|+++++++++.+| +++++++|+
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~-~~-~~lr~~la~~~~~~~~--~~~~~~~i~ 85 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQ------------REAFGYQP-DG-SLLSQATAEFYADRYG--YQARPEWIF 85 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHH------------TTCCSSCC-SS-CCHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHH------------cCCCCCCC-CC-HHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999998875 4555555543110 12457888 77 9999999999998887 557889999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+|++++ +|++.|++++++ ++++|
T Consensus 86 ~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~----~d~~~l~~~l~~------~~~~v 154 (377)
T 3fdb_A 86 PIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSAT-QREGIFIDATGG----INLHDVEKGFQA------GARSI 154 (377)
T ss_dssp EESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHH-TCCEEEEECTTS----CCHHHHHHHHHT------TCCEE
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHc-CCEEEEccCCCC----CCHHHHHHHhcc------CCCEE
Confidence 9999999999999999999999999999999999988886 999999998753 899999999875 67899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+.+...+.++..+.. .+++++++||||.+|++
T Consensus 155 ~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~------~~~~i~~~s~sK~~g~~ 228 (377)
T 3fdb_A 155 LLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTA------ASVCITITAPSKAWNIA 228 (377)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHH------HHHEEEEECSTTTTTCG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccC------CCcEEEEEeChHhccCc
Confidence 999999999999999999999999999999999999999876653112334433321 36789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceeec
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLK 359 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~ 359 (483)
|+|+||+++.++.+.+.+...... +.+++++|.++.+++... .+++++.++.++++++++.+.|++. |+++..
T Consensus 229 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 305 (377)
T 3fdb_A 229 GLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYG---TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP 305 (377)
T ss_dssp GGCCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC
T ss_pred chhheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec
Confidence 999999998677777776654432 558889998888877642 3457788889999999999999885 899999
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+.+++++|++++..... .+++..+++++||.++||+.|+...++++||+++ .+++++++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~-~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 306 MQATYLMWIDFRDTTIE------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFA-TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp CSBCSEEEEECTTSCCC------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEEECcccCCC------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHhh
Confidence 99999999999863111 1567778877899999999998666789999998 4899999999999998864
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.31 Aligned_cols=363 Identities=18% Similarity=0.275 Sum_probs=287.4
Q ss_pred CCcccccchhhhh---cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCCc
Q 011570 46 NGVIQMGLAENLL---CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPDR 121 (483)
Q Consensus 46 ~~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~~ 121 (483)
.++|||+.+.+.. +++.+.+++.+.... .......|++..|..+||+++|+++.+.+| ++ +++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~y~~~~g~~~lr~~la~~l~~~~g--~~~~~~~~ 111 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEK---------EYHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDEDN 111 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHH---------SHHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGGG
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhh---------cchhhcCCCCCCCCHHHHHHHHHHHHhccC--CCCCCccc
Confidence 3678998875432 445555555431000 001235788888999999999999976656 44 57889
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc--CCc
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES--NIR 199 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~--~~~ 199 (483)
|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+|++++ .+|++.|++++++...+ +.+
T Consensus 112 v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~ 187 (425)
T 1vp4_A 112 LIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDD---GMDLNVLERKLSEFDKNGKIKQ 187 (425)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCGGG
T ss_pred EEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEEeccCCC---CCCHHHHHHHHHhhhhcccCCC
Confidence 999999999999999999999999999999999999988875 999999998754 38999999998753221 236
Q ss_pred eeEE-EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 200 IKGV-LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 200 ~~~i-~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
+++| ++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+. ..+++++++||||
T Consensus 188 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~------~~~~~i~~~s~sK 260 (425)
T 1vp4_A 188 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG-ETVDPIFKIG------GPERVVLLNTFSK 260 (425)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS-CCCCCHHHHH------CTTTEEEEEESTT
T ss_pred ceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC-CCCcCHHHhC------CCCCEEEEecccc
Confidence 8888 578999999999999999999999999999999999999987765 4445666653 2467899999999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---
Q 011570 279 DMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--- 353 (483)
Q Consensus 279 ~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 353 (483)
.+| +|+|+||++++ +.+.+.+...... +.+++++|.++..++.... ..+++++.++.++++++++.+.|++.
T Consensus 261 ~~~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 337 (425)
T 1vp4_A 261 VLA-PGLRIGMVAGS-KEFIRKIVQAKQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELYRRKRTVMLNALEEYFSD 337 (425)
T ss_dssp TTC-GGGCEEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccc-cccceEEEeeC-HHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999 99999999995 6666655443322 4578899999988887542 25667888889999999999999875
Q ss_pred --CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHH
Q 011570 354 --GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 354 --gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
|+.+..+.+|+|+|++++...+. .++++.|+++ ||.+.||..|+.. .++++||+++..+++++++++++
T Consensus 338 ~~g~~~~~~~~g~~~~~~~~~~~~~------~~l~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~ 410 (425)
T 1vp4_A 338 IPGVKWVKSEGGLFIWLTLPEGFDT------WEMFEYAKRK-KVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKR 410 (425)
T ss_dssp STTCEECCCSBSSEEEEECCTTCCT------TTTHHHHHHH-TEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHH
T ss_pred CCceEEecCCccEEEEEEcCCCCCH------HHHHHHHHHC-CCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHH
Confidence 68888788899999999853322 2567777766 9999999988643 45799999986589999999999
Q ss_pred HHHHHHHhhhc
Q 011570 430 ITSFMLKNVEA 440 (483)
Q Consensus 430 L~~~l~~~~~~ 440 (483)
|++++++..++
T Consensus 411 l~~~l~~~~~~ 421 (425)
T 1vp4_A 411 LREVVLEYGKE 421 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999877654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=366.58 Aligned_cols=344 Identities=26% Similarity=0.429 Sum_probs=281.5
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..+||+++|+++.+.+| +++++++|++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~v~~ 106 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVVV 106 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEEE
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 46789999988764 4445555443110 0124688878899999999999987776 4467899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++++|.+|+++|++++++ ++++|+
T Consensus 107 ~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~ 179 (389)
T 1o4s_A 107 TNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVL 179 (389)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCCT------TEEEEE
T ss_pred ecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEecCCccCCCCCHHHHHHhccc------CceEEE
Confidence 999999999999999999999999999999999988875 9999999987655788999999998753 689999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++|+||||.+++.+++++|+++|+++|++||+||+|.++.+.+ .+.++..+.. ..+++++++||||.+|++|
T Consensus 180 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g--~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G 252 (389)
T 1o4s_A 180 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD--EFTSILDVSE-----GFDRIVYINGFSKSHSMTG 252 (389)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS--CCCCHHHHCS-----SSTTEEEEEESTTTTTCGG
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC--CCCCHhhcCC-----CCCcEEEEeechhhcCCcc
Confidence 99999999999999999999999999999999999999876654 2345655521 2478999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||+++ ++.+.+.+..... .+.+++++|.++..++... +++.++.++++++++.+.|+++|+++..+.+
T Consensus 253 ~r~G~l~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 325 (389)
T 1o4s_A 253 WRVGYLIS-SEKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPEG 325 (389)
T ss_dssp GCCEEEEC-CHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSB
T ss_pred cceEEEEe-CHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhcCCeeecCCc
Confidence 99999999 5566665554432 2457888999888888764 3556677888889999999888988888889
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|+|+|++++ .+ ..++++.|++++||.+.||..|+. ++++||+++. +++++++++++|+++++
T Consensus 326 ~~~~~~~~~--~~------~~~l~~~l~~~~gi~v~~g~~f~~--~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 326 AFYLFFKVR--GD------DVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp SSEEEEECS--SC------HHHHHHHHHHHHCEECEEGGGGTC--TTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCC--CC------HHHHHHHHHHHCCEEEeCchhcCC--CCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 999999987 11 236788888667999999998864 5699999984 89999999999998874
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=369.45 Aligned_cols=358 Identities=17% Similarity=0.300 Sum_probs=287.2
Q ss_pred CCCcccccchh-hhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-Cc
Q 011570 45 PNGVIQMGLAE-NLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DR 121 (483)
Q Consensus 45 ~~~~i~l~~~~-n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~ 121 (483)
+..+|||+.+. ++++ ++.+.+++.+... . .....|++..|..++++++++++.+.+| .++++ ++
T Consensus 38 ~~~~id~~~g~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~~~g~~~l~~~l~~~l~~~~g--~~~~~~~~ 104 (407)
T 3nra_A 38 EGRPVDFSHGDVDAHEPTPGAFDLFSAGVQ----------S-GGVQAYTEYRGDLGIRDLLAPRLAAFTG--APVDARDG 104 (407)
T ss_dssp CSCCEETTSCCTTTSCCCTTHHHHHHHHHH----------H-THHHHSCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTS
T ss_pred CCceeeecCcCCCCCCCcHHHHHHHHHHHh----------c-CCCCCcCCCCCCHHHHHHHHHHHHHHhC--CCCCCCCc
Confidence 34589999864 3343 3445554443100 0 1134688888999999999999998887 44556 79
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC----CCCcccCHHHHHHHHHHHHhcC
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS----SNDFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~----~~~~~~d~~~l~~~i~~~~~~~ 197 (483)
|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++. +.++.+|++.|++++.+
T Consensus 105 i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----- 178 (407)
T 3nra_A 105 LIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFF-EGEMVPVQLDYVSADETRAGLDLTGLEEAFKA----- 178 (407)
T ss_dssp EEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-----
T ss_pred EEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHc-CCEEEEeecccccccCcCCCcCHHHHHHHHhh-----
Confidence 999999999999999999999999999999999999988886 99999999842 35678999999999874
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh-hhccccCCCeEEEEecC
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII-DQDIACNRNLIHIVYSL 276 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~-~~~~~~~~~~vi~~~S~ 276 (483)
++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ ..+.++..+. . ..+++++++||
T Consensus 179 -~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~-----~~~~~i~~~s~ 251 (407)
T 3nra_A 179 -GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAG-ASYTHLRAEAAV-----DAENVVTIMGP 251 (407)
T ss_dssp -TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTT-CCCCCGGGCTTS-----CGGGEEEEECS
T ss_pred -CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCChhhcCcc-----cCCcEEEEeCc
Confidence 68899999999999999999999999999999999999999999987776 5555555543 1 35789999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
||.+|++|+|+||+++ ++.+.+.+...... ...+++.|.++..++.... .++++.+++++++++++.+.|+++
T Consensus 252 sK~~g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~ 327 (407)
T 3nra_A 252 SKTESLSGYRLGVAFG-SRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP---GWMEDRIARHQAIRDELLHVLRGCE 327 (407)
T ss_dssp SSTTCCGGGCCEEEEE-CHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT---THHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ccccCCCeeeEEEEEc-CHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 56666665543322 3456788888888887531 235666777888899999999988
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+.+..+.+++|+|++++.... ...++...|++++||.++||..|+...++++||+++. +++++++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~ 401 (407)
T 3nra_A 328 GVFARTPQAGSYLFPRLPKLAV-----APAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTL 401 (407)
T ss_dssp TCBCCCCSBSSEECCBCCCBSS-----CHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHH
T ss_pred CceeccCCeeEEEEEeCCCCCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHH
Confidence 8998888989999999975211 1336788888778999999999987678899999985 999999999999999
Q ss_pred HHHhh
Q 011570 434 MLKNV 438 (483)
Q Consensus 434 l~~~~ 438 (483)
+++.+
T Consensus 402 ~~~~~ 406 (407)
T 3nra_A 402 VERYR 406 (407)
T ss_dssp HHHHB
T ss_pred HHHhh
Confidence 88753
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=368.81 Aligned_cols=354 Identities=22% Similarity=0.399 Sum_probs=284.9
Q ss_pred CCcccccchhh---hhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc
Q 011570 46 NGVIQMGLAEN---LLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR 121 (483)
Q Consensus 46 ~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~ 121 (483)
.++|+|+.+++ .++ ++.+.+++.+... .....|++..|..++|+++|++++..+| +++++++
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~l~~~~g--~~~~~~~ 103 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPDD 103 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGG
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHhcC--CCCCHHH
Confidence 46789999988 443 3444444433100 0123688888899999999999998776 4577899
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|++|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++++|.+|++.|++++++ +++
T Consensus 104 v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~ 176 (406)
T 1xi9_A 104 VRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RTK 176 (406)
T ss_dssp EEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TEE
T ss_pred EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHc-CCEEEEeecCCCcCCcCCHHHHHHhhCc------Cce
Confidence 999999999999999999999999999999999999888875 9999999987645788999999998853 689
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe-EEEEecCcccc
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL-IHIVYSLSKDM 280 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~-vi~~~S~SK~~ 280 (483)
+|++++|+||||.+++.+++++|+++|+++|++||+||+|.++.++ ..+.++..+ ..++ +++++||||.+
T Consensus 177 ~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~--~~~~~~~~~-------~~~~~~i~~~s~sK~~ 247 (406)
T 1xi9_A 177 AIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYE--GEHISPGSL-------TKDVPVIVMNGLSKVY 247 (406)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSS--SCCCCHHHH-------CSSSCEEEEEESTTTT
T ss_pred EEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccC--CCCCCHHHc-------CCCceEEEEecccccc
Confidence 9999999999999999999999999999999999999999987774 333455555 1367 89999999999
Q ss_pred CCCCceEEEEE--ecCh---HHHHHHHHhhhc-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 281 GFPGFRVGIIY--SYND---QVVSCARKMSSF-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 281 g~~GlRiG~li--~~~~---~l~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
|++|+|+||++ ++++ .+.+.+...... +.+++++|.++.+++.... +++++.++.++++++++.+.|.++
T Consensus 248 ~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~l~~~L~~~~ 324 (406)
T 1xi9_A 248 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGPM---DYLKEYMKKLKERRDYIYKRLNEIP 324 (406)
T ss_dssp CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSCC---HHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCCccEEEEEEEecCchhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999 7541 566655544332 5678899999888884321 236777788899999999999988
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+++..+.+|+|+|++++.... .+..+++..|++++||.+.||..|+..+++++||+++ .+++++++++++|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~-~~~~~i~~~~~~l~~~ 399 (406)
T 1xi9_A 325 GISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEKF 399 (406)
T ss_dssp TEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHH
T ss_pred CCeeecCCeeEEEEEecCccCC----CCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 8888888899999998874110 0133678888867799999999887545679999998 7999999999999999
Q ss_pred HHHh
Q 011570 434 MLKN 437 (483)
Q Consensus 434 l~~~ 437 (483)
+++.
T Consensus 400 l~~~ 403 (406)
T 1xi9_A 400 MKER 403 (406)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8765
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=370.16 Aligned_cols=355 Identities=16% Similarity=0.170 Sum_probs=284.1
Q ss_pred CCcccccchhh-hhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc--
Q 011570 46 NGVIQMGLAEN-LLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-- 121 (483)
Q Consensus 46 ~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~-- 121 (483)
.++|||+.+++ +++ ++.+ .++...... +.. .....|++..|..+||+++|+++.+.. +.+++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~-~~~~a~~~~-------~~~-~~~~~y~~~~g~~~lr~~ia~~~~~~~---~~~~~~~~~ 114 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFA-SSLDAMFND-------LTP-DEIFPYAPPQGIEELRDLWQQKMLRDN---PELSIDNMS 114 (430)
T ss_dssp TCSEECCCSSCEETTEECCC-HHHHTTBSS-------CCG-GGTSSCCCTTCCHHHHHHHHHHHHHHC---TTCCGGGBC
T ss_pred CCcEEeeeeeccCCCCchhh-HHHHHHHHh-------cCc-ccccccCCCCCCHHHHHHHHHHHhccC---cccCCCccc
Confidence 46799999988 654 2222 122221111 000 135689988899999999999997652 3467888
Q ss_pred -EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh-hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 122 -IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW-RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 122 -i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~-~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
|++|+|+++++..++.+++++||+|+++.|+|+.+...++. . |.+++.+++++++ |.+|++.|++++.+. +.+
T Consensus 115 ~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~-~~~d~~~l~~~l~~~---~~~ 189 (430)
T 2x5f_A 115 RPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRN-GANLQTYPIFDKD-GHYTTDSLVEALQSY---NKD 189 (430)
T ss_dssp CCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTT-CCEEEEECCBCTT-SCBCSHHHHHHHHHC---CSS
T ss_pred eEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhc-CCeEEEEeccCcc-CCcCHHHHHHHHHhc---CCC
Confidence 99999999999999999999999999999999999988887 6 9999999987643 789999999998742 236
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh-----cCcEEEEccccccCccCCCCCcchHH-HhhhhccccCCCe---E
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINE-----KNIHLVCDEIYAATVFTKESSFVSIA-EIIDQDIACNRNL---I 270 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~-----~~~~iI~Deay~~~~~~~~~~~~s~~-~l~~~~~~~~~~~---v 270 (483)
+++|++++||||||.+++.+++++|+++|++ +|++||+||+|.++.+++ ..+.++. .+.. ..++ +
T Consensus 190 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~ 263 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYED-VYTQSLFTALTN-----LHSNAILP 263 (430)
T ss_dssp EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSS-SCCSCHHHHHHT-----TCCTTEEE
T ss_pred CEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCc-ccchHHHHHHhh-----ccCCcceE
Confidence 8999999999999999999999999999999 999999999999887765 4445655 5532 2467 8
Q ss_pred EEEecCccccCCCCceEEEEEe--cChHHHHHHHHhh------hcCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHHH
Q 011570 271 HIVYSLSKDMGFPGFRVGIIYS--YNDQVVSCARKMS------SFGLVSSQTQHLIATMLS-DDQFVEKFIAESAKRIAE 341 (483)
Q Consensus 271 i~~~S~SK~~g~~GlRiG~li~--~~~~l~~~~~~~~------~~~~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~l~~ 341 (483)
++++||||.+|++|+|+||+++ +++.+.+.+.... ..+.+++++|.++..++. +..+ .+.+++.++.+++
T Consensus 264 i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~ 342 (430)
T 2x5f_A 264 IRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQF-DKEIEQNIQTLKE 342 (430)
T ss_dssp EEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHH
T ss_pred EEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHH-HHHHHHHHHHHHH
Confidence 9999999999999999999999 3455555554433 235588999999999998 7655 3445668889999
Q ss_pred HHHHHHHhhh----cCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc
Q 011570 342 RHKAFTWGLS----QVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN 417 (483)
Q Consensus 342 ~~~~l~~~L~----~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~ 417 (483)
+++++.+.|+ +.|+++.++.+|+|+|++++ ..+ ..+++..|++++||.+.|| .++++||+++.
T Consensus 343 ~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~------~~~~~~~l~~~~gi~v~~g------~~~~iRis~~~ 409 (430)
T 2x5f_A 343 RYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH-DVD------PEALRKHLIDKYSIGVIAL------NATDIRIAFSC 409 (430)
T ss_dssp HHHHHHHHHTCGGGTTTEEECCCCBSSEEEEEES-SSC------HHHHHHHHHHHHCEECEEC------SSSEEEEEGGG
T ss_pred HHHHHHHHHHhhCCCCCceeeCCCceEEEEeCCC-CCC------HHHHHHHHHHhCCEEEecC------CCCeEEEEEec
Confidence 9999999998 66898888999999999997 221 2377888887579999998 35799999985
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 011570 418 MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 418 ~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++++++++++|++++++.
T Consensus 410 ~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 410 VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp SCGGGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 68999999999999998764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=372.31 Aligned_cols=355 Identities=20% Similarity=0.327 Sum_probs=284.0
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~i 124 (483)
++|+|+.+++.++ ++.+.+++.+... .....|++..|..+||+++|+++.+.+| ++++++ +|++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~~v~~ 91 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIA------------GGVNQYPPGPGSAPLRRAIAAQRRRHFG--VDYDPETEVLV 91 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCTTTSEEE
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHHcC--CCCCCCceEEE
Confidence 5789999987754 4455555543100 0135788888899999999999988777 446788 9999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...+... |.+++.++++++ .+|.+|++.|++++.+ ++++|
T Consensus 92 t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v 164 (411)
T 2o0r_A 92 TVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMA-GAHRVTVPLVPDGRGFALDADALRRAVTP------RTRAL 164 (411)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEE
T ss_pred eCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCEEEEeeccccccCCCCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999999888875 999999998653 3578999999998853 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+.. ..++++++.|+||.+|++
T Consensus 165 ~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~~ 238 (411)
T 2o0r_A 165 IINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDH-ARHLPLAGFDG-----MAERTITISSAAKMFNCT 238 (411)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----TGGGEEEEEEHHHHTTCT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCcChhhccC-----CCCCEEEEeechhhcCCc
Confidence 999999999999999999999999999999999999999887765 44445544421 236789999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||+++ ++.+.+.+..... .+..++++|.++..++... .+++++.+++++++++++.+.|++.|+++..+.
T Consensus 239 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 314 (411)
T 2o0r_A 239 GWKIGWACG-PAELIAGVRAAKQYLSYVGGAPFQPAVALALDTE---DAWVAALRNSLRARRDRLAAGLTEIGFAVHDSY 314 (411)
T ss_dssp TTCEEEEEC-CHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHTCEECCCC
T ss_pred cceEEEEee-CHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCEecCCC
Confidence 999999999 5666666554332 2456778888888877532 445778888899999999999988899988888
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----------CCCEEEEEeccCCHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-----------NPGWFRVCFANMDDRTMEIALSRI 430 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----------~~~~iRis~~~~~~e~l~~~l~~L 430 (483)
+|+|+|++++... . .+..+++..|++++||.+.||..|... .++++||+++ .+++++++++++|
T Consensus 315 ~g~~~~~~~~~~~-~---~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~-~~~e~i~~~~~~l 389 (411)
T 2o0r_A 315 GTYFLCADPRPLG-Y---DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC-KRDDTLDEAIRRL 389 (411)
T ss_dssp BSSEEEEECGGGT-C---CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECC-SCHHHHHHHHHHH
T ss_pred eeEEEEEecCCCC-C---CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEec-CCHHHHHHHHHHH
Confidence 9999999997521 0 012367888887789999999888432 3578999998 4899999999999
Q ss_pred HHHHHHh
Q 011570 431 TSFMLKN 437 (483)
Q Consensus 431 ~~~l~~~ 437 (483)
++++++.
T Consensus 390 ~~~~~~~ 396 (411)
T 2o0r_A 390 SVLAERP 396 (411)
T ss_dssp GGGGC--
T ss_pred HHHHhcc
Confidence 8876543
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-45 Score=366.95 Aligned_cols=352 Identities=14% Similarity=0.227 Sum_probs=281.5
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHH-HHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPE-FRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
.++|+|+.+++.++ ++.+.+++.+... .....|++. ..+ ||+++|+++++.+| +++++++|+
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~~lr~~la~~l~~~~g--~~~~~~~v~ 91 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRW--KNDEFLAAIAHWFSTQHY--TAIDSQTVV 91 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCS--CCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHh------------CCCCCCCCC--ChHHHHHHHHHHHHHhcC--CCCCHHHEE
Confidence 57899999988764 4556665544111 123467764 688 99999999988766 456789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCC-CCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSS-NDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.+|++.+ ++|.+|++.|++++++ .++++
T Consensus 92 ~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-----~~~~~ 165 (390)
T 1d2f_A 92 YGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKI 165 (390)
T ss_dssp EESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHC-CCEEEEeecccCCCccccCHHHHHHHhcc-----CCCeE
Confidence 9999999999999999999999999999999999988876 999999998754 3678999999998853 26899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+.. .. ..+ +.||||.+|+
T Consensus 166 v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~-~d~-~~s~sK~~~~ 237 (390)
T 1d2f_A 166 MLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGE-QPHIPWSNVAR-----GD-WAL-LTSGSKSFNI 237 (390)
T ss_dssp EEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSS-SCCCCGGGTCC-----SS-EEE-EECSHHHHTC
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCcCHHHcch-----hh-Hhh-ccCccHhhcc
Confidence 9999999999999999999999999999999999999999887765 44455554422 11 123 8999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhh----cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Cce
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSS----FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIG 356 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~----~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~ 356 (483)
+|+|+||++++++.+.+.+..... ++.+++++|.++.+++... .+++++.++.++++++++.+.|++ + |+.
T Consensus 238 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 314 (390)
T 1d2f_A 238 PALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG---APWLDALRIYLKDNLTYIADKMNAAFPELN 314 (390)
T ss_dssp GGGCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred cChhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999966667666554433 3467888888887777532 345777888899999999999988 5 888
Q ss_pred eecCCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 357 CLKSNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 357 ~~~~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+.++.+++++|++++.. .+ ..+++..|++++||.+.||..|+...++++||+++. +++++++++++|+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 315 WQIPQSTYLAWLDLRPLNID------DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIR 387 (390)
T ss_dssp CCCCSBCSEEEEECGGGCCC------HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHH
T ss_pred EecCCccEEEEEEccccCCC------HHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHH
Confidence 88889999999999753 11 236788888678999999998865456899999985 78999999999999887
Q ss_pred Hh
Q 011570 436 KN 437 (483)
Q Consensus 436 ~~ 437 (483)
+.
T Consensus 388 ~~ 389 (390)
T 1d2f_A 388 AV 389 (390)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=360.68 Aligned_cols=332 Identities=16% Similarity=0.205 Sum_probs=276.4
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++|+++ ++.+.+++.+. ......|++..+ .+||+++|++++ +++++|++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~v~~ 87 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQN-------------ANKAHLYPDDSM-IELKSTLAQKYK--------VQNENIII 87 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHH-------------GGGTTSCCCTTC-HHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHH-------------HHhhccCCCCCh-HHHHHHHHHHhC--------CCcceEEE
Confidence 57899999999986 45566655441 123467887766 999999999986 57899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+++ ++.++ +|++++++++++ ++++|+
T Consensus 88 ~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~-~~~~~-~d~~~l~~~l~~------~~~~v~ 158 (365)
T 3get_A 88 GAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQC-GAKCYKTQS-ITHNL-DEFKKLYETHKD------EIKLIF 158 (365)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHH-TCEEEECSS-SSCCH-HHHHHHHHHTTT------TEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHc-CCEEEEEec-CCCCC-CCHHHHHHHhCC------CCCEEE
Confidence 999999999999999999999999999999999988886 999999998 33467 999999998863 799999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc--CCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~--~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
+++||||||.+++.+++.+|+++| ++|+++|+||+|.++.| .+ ..+.+...... ..+++++++||||.+|+
T Consensus 159 ~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~sK~~~~ 231 (365)
T 3get_A 159 LCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDS-KKHLEPCELIK-----EFDNVLYLGTFSKLYGL 231 (365)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCG-GGCCCHHHHHH-----HCTTEEEEEESSSTTSC
T ss_pred EcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCC-cccccHhHHhc-----cCCCEEEEeecchHhcC
Confidence 999999999999999999999998 57999999999998764 43 33344444433 35789999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+|+||+++ ++.+.+.+......+.+++++|.++..++.+.. ++++.+++++++++++.+.|+++|+++.++.+
T Consensus 232 ~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~ 306 (365)
T 3get_A 232 GGLRIGYGIA-NANIISAFYKLRAPFNVSNLALKAAVAAMDDDE----FTEKTLENNFSQMELYKEFAKKHNIKIIDSYT 306 (365)
T ss_dssp TTTCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCSS
T ss_pred cchheEEEEc-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCCCC
Confidence 9999999999 677777776666556689999999999998753 46778888999999999999999998877766
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
.|+|++++.. + ..++.+.|.+ +||.++||..|+ ++++||+++ +++++++++++|++++
T Consensus 307 -~~~~~~~~~~-~------~~~~~~~l~~-~gi~v~~g~~~~---~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 307 -NFITYFFDEK-N------STDLSEKLLK-KGIIIRNLKSYG---LNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -SEEEEECSSS-C------HHHHHHHHHT-TTEECEECGGGT---CSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred -eEEEEECCCC-C------HHHHHHHHHH-CCEEEEECccCC---CCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 4789999853 1 3367777764 599999999886 689999998 8899999999998875
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=364.57 Aligned_cols=351 Identities=15% Similarity=0.258 Sum_probs=286.4
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++.+... .....|++ +..++++++++++.+.+| +++++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~--~~~~~~~~l~~~l~~~~g--~~~~~~~v~~ 95 (391)
T 4dq6_A 32 NDLLPMWVADMDFKAAPCIIDSLKNRLE------------QEIYGYTT--RPDSYNESIVNWLYRRHN--WKIKSEWLIY 95 (391)
T ss_dssp SCSEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHh------------CCCCCCCC--CCHHHHHHHHHHHHHHhC--CCCcHHHeEE
Confidence 57899999988765 4556555544111 11345654 569999999999998877 4567899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC--CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD--SSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++ ++++|.+|+++++++++ ++++
T Consensus 96 ~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~ 167 (391)
T 4dq6_A 96 SPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNN-NRELIISPLQKLENGNYIMDYEDIENKIK-------DVKL 167 (391)
T ss_dssp ESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHT-TCEEEECCCEECTTSCEECCHHHHHHHCT-------TEEE
T ss_pred cCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHc-CCeEEeeeeeecCCCceEeeHHHHHHHhh-------cCCE
Confidence 999999999999999999999999999999999988876 9999999987 56678899999999875 2889
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++|+||||.+++.+++++|+++|+++|+++|+||+|.++.+.+ ..+.++..+..+ ..+++++++|+||.+|+
T Consensus 168 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~ 242 (391)
T 4dq6_A 168 FILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKK-HKHIPMASISKE----FEKNTITCMAPTKTFNI 242 (391)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT-CCCCCGGGSCHH----HHHTEEEEECSHHHHTC
T ss_pred EEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCC-CCccCHHHcCcc----ccCcEEEEEechhhccC
Confidence 9999999999999999999999999999999999999999887765 444555544221 13678999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhh---cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Ccee
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSS---FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGC 357 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~ 357 (483)
+|+|+||++++++.+.+.+..... .+.++++++.++..++... .+++++.+++++++++++.+.|++ . |+.+
T Consensus 243 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 243 AGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG---ESWLESFLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch---HHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 999999999976567666655432 2357788888887777642 345777888899999999999987 3 8999
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
..+.+++++|++++... ....++++.|++++||.++||+.|+...++++||+++ .+++++++++++|++++
T Consensus 320 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 320 RKPEGTYLLWVDFSALG-----LSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLA-CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp CCCSBSSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred cCCCccEEEEEEhhhcC-----CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEc-CCHHHHHHHHHHHHHHh
Confidence 99999999999997521 0133778888876699999999998767789999998 68999999999999876
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=362.79 Aligned_cols=352 Identities=17% Similarity=0.204 Sum_probs=275.1
Q ss_pred CCcccccchhh-----hh-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAEN-----LL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|+|+.+++ ++ +++.+.+++.+... .....|++..|.++||+++++++....+. . .+
T Consensus 38 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~g~~~lr~~ia~~~~~~~~~--~-~~ 102 (418)
T 3rq1_A 38 ENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSD------------SEHVGYAPIAGIPDFLCAAEKECFGNFRP--E-GH 102 (418)
T ss_dssp GGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCH------------HHHHSCCCTTCCHHHHHHHHHHHHGGGCC--S-SE
T ss_pred CCeEECCCCcccCCCCCccccHHHHHHHHHhcc------------cccCCCCCCCChHHHHHHHHHHHhcccCc--c-cc
Confidence 36789999964 43 35666776655211 12457998889999999999999765431 1 12
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++|+|+++++..++.++++|||+|+++.|+|..|...++.. |.+++.++++++ +|.+|++.|++++++.... +
T Consensus 103 ~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~--~ 178 (418)
T 3rq1_A 103 IRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDT-GRTLVTYSLFDE-HNNFNHEAFQNRVNELAAK--Q 178 (418)
T ss_dssp EEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECSBCT-TSSBCHHHHHHHHHHHHHH--C
T ss_pred ccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHc-CCEEEEEeeeCC-CCCcCHHHHHHHHHHhhcc--C
Confidence 39999999999999999999999999999999999999988876 999999998654 3789999999999753221 3
Q ss_pred ee-EEEEeCC-CCCCcCCCCHHHHHHHHHHHh------hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe--
Q 011570 200 IK-GVLITNP-SNPLGTFLDRETLKDIVSFIN------EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL-- 269 (483)
Q Consensus 200 ~~-~i~l~~P-~NPtG~~~~~~~l~~i~~~a~------~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~-- 269 (483)
++ ++++++| |||||.+++.+++++|+++|+ +||++||+||+|.++.+.+ ....++...... ..++
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~----~~~~~~ 253 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK-DEVRAFFNKFSH----LPKEIL 253 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH-HHHHGGGGGGTT----CCTTEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh-HHHHHHHHHHHh----cCCCce
Confidence 44 7899999 999999999999999999999 8999999999998876544 222233222221 1234
Q ss_pred EEEEecCccccCCCCceEEEEEe--cChHHHHHHHHhh------hcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHH
Q 011570 270 IHIVYSLSKDMGFPGFRVGIIYS--YNDQVVSCARKMS------SFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKR 338 (483)
Q Consensus 270 vi~~~S~SK~~g~~GlRiG~li~--~~~~l~~~~~~~~------~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~ 338 (483)
+++++||||.+|++|+|+||+++ .++.+.+.+.... .+..++.++|.++..++.+.++. .+..++.++.
T Consensus 254 ~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 333 (418)
T 3rq1_A 254 TCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQL 333 (418)
T ss_dssp EEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999998 3556665554432 22457889999999999887532 3344566788
Q ss_pred HHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccC
Q 011570 339 IAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418 (483)
Q Consensus 339 l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~ 418 (483)
++++++++.+.|.++|+++.++.+|+|+|++++. ..++++.| +++||.++|| ++++||+++..
T Consensus 334 ~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~l-~~~gi~v~~g-------~~~iRis~~~~ 396 (418)
T 3rq1_A 334 IRDRADIFKQEAAQVGLPMLPYRGGFFITIPTDS---------ANAICEEL-KKEHIYVIAL-------ANGIRIAACGI 396 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCSSSEEEEECTT---------HHHHHHHH-HHTTEECEEC-------SSEEEEEGGGS
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEcCCCC---------HHHHHHHH-HhCCEEEecC-------CCCeEEEEecC
Confidence 9999999999999889999999999999998752 23566654 5779999997 35799999866
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q 011570 419 DDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l~~~~ 438 (483)
+++++++++++|++++++..
T Consensus 397 ~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 397 PKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CHHHHTTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999997653
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=380.39 Aligned_cols=357 Identities=15% Similarity=0.196 Sum_probs=271.9
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHH-HhhhCCCCC-cCCCcEEEe
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFM-GKVRGNRIT-FDPDRIVMS 125 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~-~~~~g~~~~-~~~~~i~it 125 (483)
+|+|+.+++.++++.+.+.+.+. . ....|+++.|..+||+++++++ .+.++..+. .++++|++|
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~-------------~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t 171 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDG-------------I-LGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAV 171 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHH-------------H-HTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEE
T ss_pred hhecccCCCCCCChHHHHHHHHh-------------h-hcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEE
Confidence 67888888777655444433320 0 1257999999999999988765 443331121 256899999
Q ss_pred CChhHHHHHHHHH-----hcCCCCeEEEeCCCCcChHHHHhhh-cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 126 GGATGAHETVAFC-----LADPGDAFLVPTPYYPGFDRDLRWR-TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 126 ~G~~~al~~~~~~-----l~~~gd~Vlv~~P~y~~~~~~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
+|+++++..++.+ +++|||.|++++|+|+.|...+... .|.++++++++++++|.+|++.|++++. .+
T Consensus 172 ~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~~ 245 (546)
T 2zy4_A 172 EGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD------PA 245 (546)
T ss_dssp EHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS------TT
T ss_pred CCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC------CC
Confidence 9999999999988 5799999999999999998875432 2789999999887889999999987653 37
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHH--hhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFI--NEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a--~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
+++|+++|||||||.+++.+++++|+++| +++|++||+||+|.++.+. +.++.... .+++|+++|||
T Consensus 246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~----~~s~~~~~-------~~~~i~~~S~S 314 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD----FQSLFAIC-------PENTLLVYSFS 314 (546)
T ss_dssp EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT----CCCHHHHC-------GGGEEEEEEST
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc----CcCHHHhC-------CCCEEEEEeCc
Confidence 89999999999999999999999999999 7899999999999986532 24555542 36899999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHH-------------h-------------------------hhcCCCChHHHHHH-
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARK-------------M-------------------------SSFGLVSSQTQHLI- 318 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~-------------~-------------------------~~~~~~s~~~q~~~- 318 (483)
|.+|++|+|+||++++++.+.+.+.. . .....++.+.|.++
T Consensus 315 K~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a 394 (546)
T 2zy4_A 315 KYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMA 394 (546)
T ss_dssp TTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHH
T ss_pred cccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHH
Confidence 99999999999999966534444311 1 11134677888764
Q ss_pred ----HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---ccCh-------HHHHH
Q 011570 319 ----ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK---EQTY-------EAEMA 384 (483)
Q Consensus 319 ----~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~---~~~~-------~~~~~ 384 (483)
++++.+. +.+.++.++.++++++.+.+.|. .++.+.++++|+|+|++++.+.. ...+ ..+.+
T Consensus 395 ~~a~~all~~~---~~~~~~~r~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 395 LFSLFALMDEA---DEYKHTLKQLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 3455542 23567788889999999999996 56666788999999999864210 0000 01234
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
++.++++++||.|.||+.|+. +++++||+++..+++++++++++|++++++..++
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~ 525 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGS-NRPSGRASLANLNEYEYAAIGRALRKMADELYAE 525 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTC-SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCC-CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788999999999986 4679999998668999999999999999877654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=372.26 Aligned_cols=357 Identities=14% Similarity=0.138 Sum_probs=285.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++|+++ ++.+.+++.+... . .....|++..|..++|+++|++++..+| +++++++|++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~~~g~~~lr~~la~~~~~~~g--~~~~~~~i~~ 110 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLR----------E-GVASIYPNLDGLPELKQEASRFAKLFVN--IDIPARACVP 110 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHH----------H-TGGGSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHh----------C-CcCcCCCCCCChHHHHHHHHHHHHHhhC--CCCCcccEEE
Confidence 46799999998876 4555555543100 0 1226799888999999999999998887 5578899999
Q ss_pred eCChhHHHHHHHHHhc--CCCC--eEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 125 SGGATGAHETVAFCLA--DPGD--AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 125 t~G~~~al~~~~~~l~--~~gd--~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
|+|+++++..++.+++ ++|| +|+++.|+|..+...++.. |.+++.++++ +.+|.+|++.|++++++ .++
T Consensus 111 t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~-~~~~~~d~~~l~~~l~~-----~~~ 183 (437)
T 3g0t_A 111 TVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRIL-GQKFESFDLF-EYRGEKLREKLESYLQT-----GQF 183 (437)
T ss_dssp ESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHH-TCCCEEEEGG-GGCTTHHHHHHHHHHTT-----TCC
T ss_pred eCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHc-CCEEEEEeec-CCCCccCHHHHHHHHhc-----CCc
Confidence 9999999999999998 9999 9999999999999998886 9999999997 45788999999999842 378
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc---chH-HHhhhhccccCCCeEEEEecC
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF---VSI-AEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~---~s~-~~l~~~~~~~~~~~vi~~~S~ 276 (483)
++|++++||||||.+++.+++++|+++|+++|++||+||+|+++.+.+..+. .++ ..+.. ..+++++++|+
T Consensus 184 ~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s~ 258 (437)
T 3g0t_A 184 CSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVAN-----YTDNYILALSS 258 (437)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGG-----TCSCEEEEEES
T ss_pred eEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCC-----CCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999998766541111 011 22321 25789999999
Q ss_pred ccccCCCCceEEEEEecChHHHH-H-----------------HHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHH
Q 011570 277 SKDMGFPGFRVGIIYSYNDQVVS-C-----------------ARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~l~~-~-----------------~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (483)
||.+|++|+|+||++++ +.+.+ . +.... ..+.+++++|.++..++........++++.+
T Consensus 259 sK~~~~~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 259 SKAFSYAGQRIGVLMIS-GKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSV 337 (437)
T ss_dssp TTTTSCGGGCCEEEEEC-HHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred ccCCCCccceeEEEEEC-HHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999995 55555 3 33322 2356888999999888865432112267778
Q ss_pred HHHHHHHHHHHHhhhcCCceee-------cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 337 KRIAERHKAFTWGLSQVGIGCL-------KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~~gi~~~-------~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
++++++++++.+.|+++|+++. ++.+++|+|++++ ..+ ..++++.|++ +||.+.||..|+...++
T Consensus 338 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~l~~~L~~-~gi~v~~~~~~~~~~~~ 409 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMD------SSKLIEKFVR-YGMCAITLKTTGSKRNE 409 (437)
T ss_dssp HHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET-TCC------HHHHHHHHHH-TTEECEESTTTTCCCTT
T ss_pred HHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC-CCC------HHHHHHHHHH-cCeEEeeccccCCCCCC
Confidence 8899999999999999999888 4488899999997 222 2367777775 59999999988765557
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 410 WFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
++||+++..+++++++++++|++++++
T Consensus 410 ~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 410 AMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 899999866999999999999988753
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=368.10 Aligned_cols=350 Identities=19% Similarity=0.281 Sum_probs=275.6
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++.+.... .........|++..|..+||+++|+|+.+ + +.+++++|++
T Consensus 56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~--~~~~~~~i~~ 124 (432)
T 3ei9_A 56 AQVISLGIGDTTEPIPEVITSAMAKKAHE-------LSTIEGYSGYGAEQGAKPLRAAIAKTFYG--G--LGIGDDDVFV 124 (432)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHHHH-------TTSTTTCCCCCCTTCCHHHHHHHHHHHHT--T--TTCCGGGEEE
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhc-------ccccCCccCCCCCCCCHHHHHHHHHHHHc--c--CCCCcceEEE
Confidence 47899999988764 44555544431100 00001235788888999999999999974 2 3467899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
|+|+++++..+ ..++++||.|+++.|+|+++...++.. |. +++.+++++++++..|++.
T Consensus 125 t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------- 195 (432)
T 3ei9_A 125 SDGAKCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------- 195 (432)
T ss_dssp ESCHHHHHHHH-HHHHCTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-------
T ss_pred CCChHHHHHHH-HHHcCCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhh-------
Confidence 99999999975 778899999999999999999888775 63 6788888766666666543
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
.+++++|++++||||||.+++.+++++|+++|++||++||+||+|.++.+++ .. .++..+.. ..+++++
T Consensus 196 ----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~-~~~~~~~~-----~~~~~i~ 264 (432)
T 3ei9_A 196 ----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NP-RSIFEIPG-----AEEVAME 264 (432)
T ss_dssp ----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CC-SSGGGSTT-----GGGTEEE
T ss_pred ----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CC-CChhhcCC-----CCCeEEE
Confidence 1378999999999999999999999999999999999999999999876664 32 34444422 2367899
Q ss_pred EecCccccCCCCceEEEEEecChH-------HHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQ-------VVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~-------l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
++||||+||++|+|+||++++++. +.+.+.... .++.+++++|.++.+++.+.. .+++++.++++++++
T Consensus 265 ~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~ 342 (432)
T 3ei9_A 265 TASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG--LEAMHKVIGFYKENT 342 (432)
T ss_dssp EEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH--HHHHHHHHHHHHHHH
T ss_pred EecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc--HHHHHHHHHHHHHHH
Confidence 999999999999999999996655 144444332 234578899999888887533 356788889999999
Q ss_pred HHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHH
Q 011570 344 KAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTM 423 (483)
Q Consensus 344 ~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l 423 (483)
+++.+.|.++|+++..+.+++|+|++++. .+ ..+++..+++++||.++||+.|+..+++++||+++ .+++++
T Consensus 343 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~------~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~l 414 (432)
T 3ei9_A 343 NIIIDTFTSLGYDVYGGKNAPYVWVHFPN-QS------SWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAF-GHRENI 414 (432)
T ss_dssp HHHHHHHHHTTCCEEECSSSSEEEEECTT-SC------HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECC-SCHHHH
T ss_pred HHHHHHHHHCCceecCCCcceEEEEECCC-CC------HHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEec-CCHHHH
Confidence 99999999999998888788999999983 11 33778888888899999999998767889999996 599999
Q ss_pred HHHHHHHHHHHHH
Q 011570 424 EIALSRITSFMLK 436 (483)
Q Consensus 424 ~~~l~~L~~~l~~ 436 (483)
++++++|++--+.
T Consensus 415 ~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 415 LEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999999875543
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=363.54 Aligned_cols=324 Identities=17% Similarity=0.215 Sum_probs=257.1
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHH--HHHHHHhcCC------------CCeEEEeCCC
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAH--ETVAFCLADP------------GDAFLVPTPY 152 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al--~~~~~~l~~~------------gd~Vlv~~P~ 152 (483)
..+|+++.|.++||+++|+|++ +++++|++|+|+++++ .+++.++..+ +|+|+++.|+
T Consensus 69 ~~~Y~~~~G~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 69 CRNYGGLLGIADIRELWAEALG--------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp TTSSCCSSCCHHHHHHHHHHHT--------CCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESC
T ss_pred hhCCCCCCCCHHHHHHHHHHhC--------CChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCc
Confidence 5689999999999999999985 5789999999999997 6777877765 3579999999
Q ss_pred CcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE-EeCCCCCCcCCCCHHHHHHHHHHHh-h
Q 011570 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL-ITNPSNPLGTFLDRETLKDIVSFIN-E 230 (483)
Q Consensus 153 y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~-l~~P~NPtG~~~~~~~l~~i~~~a~-~ 230 (483)
|+.+...++.. |++++.+|+++++ +|++.|++++++ .++++|+ +++||||||.+++.+++++|+++|+ +
T Consensus 141 y~~~~~~~~~~-g~~~~~v~~~~~g---~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~ 211 (422)
T 3d6k_A 141 YDRHFTITEHF-GFEMINVPMTDEG---PDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAA 211 (422)
T ss_dssp CHHHHHHHHHH-TCEEEEEEEETTE---ECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSS
T ss_pred cHHHHHHHHHc-CCEEEecCCCCCC---CCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhc
Confidence 99999998886 9999999997643 899999998853 2688888 6899999999999999999999999 9
Q ss_pred cCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--
Q 011570 231 KNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-- 307 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-- 307 (483)
+|++||+||+|.++.|..+ ..+.++.++.... ...+++++++||||. +++|+|+||++++ +.+.+.+......
T Consensus 212 ~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~-~~~GlriG~~~~~-~~l~~~l~~~~~~~~ 287 (422)
T 3d6k_A 212 PDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA--GNPNRFWFMSSTSKI-THAGSGVSFFASS-KENIEWYASHANVRG 287 (422)
T ss_dssp TTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT--TCTTCEEEEEESTTT-SCTTSSCEEEECC-HHHHHHHHHHHHHHC
T ss_pred cCCEEEEECCccccccCCCCCCCcChhhHhhcc--CCCCcEEEEcChhhh-cCcccceEEEEeC-HHHHHHHHHHHHhhc
Confidence 9999999999986334321 2344654442100 035789999999999 6799999999994 6666665554332
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CC-ceeecCCceEEEeeecCchhhccChHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VG-IGCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
+.+++++|.++..++.+.+.+.+++++.++.++++++.+.+.|.+ .| +.+..|.+|+|+|++++.. + .
T Consensus 288 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~------~ 360 (422)
T 3d6k_A 288 IGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPG-T------A 360 (422)
T ss_dssp SCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTT-C------H
T ss_pred CCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCC-C------H
Confidence 558899999999999983334677888888999999988887765 33 6777888999999999853 1 2
Q ss_pred HHHHHHHHHhcCeEeeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 383 MALWRVIINEVKLNVSP-GSSFHC---PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~p-g~~f~~---~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
..+.. +++++||.++| |..|.. ..++++||+++..+++++++++++|++++++...
T Consensus 361 ~~~~~-~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~ 420 (422)
T 3d6k_A 361 SRVVE-LAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAAL 420 (422)
T ss_dssp HHHHH-HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 24444 55678999999 555641 1357999999856899999999999999877643
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-44 Score=357.30 Aligned_cols=338 Identities=22% Similarity=0.370 Sum_probs=274.4
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+++.+... .....|++..|..+||+++|++++..+| +++++++|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~~ 94 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLK------------EGKTHYTDSRGILELREKISELYKDKYK--ADIIPDNIII 94 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHSS--CCCCGGGEEE
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHH------------cCccCCCCCCCCHHHHHHHHHHHHHHhC--CCCChhhEEE
Confidence 46789999988764 4445554433100 1135788888899999999999998776 5578899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|++++|+|+.+...++.. |.+++.++ +|+++|++++.+ ++++|+
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~--------~d~~~l~~~l~~------~~~~v~ 159 (370)
T 2z61_A 95 TGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFL-GAKPVFCD--------FTVESLEEALSD------KTKAII 159 (370)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEEC--------SSHHHHHHHCCS------SEEEEE
T ss_pred CCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CCEEEEeC--------CCHHHHHHhccc------CceEEE
Confidence 999999999999999999999999999999999988876 99999887 578999888753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.+++.+ |+++|+++|++||+||+|.++.+++ . +.++..+.. ..+++++++||||.+|++|
T Consensus 160 ~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g-~-~~~~~~~~~-----~~~~~i~~~s~sK~~~~~G 228 (370)
T 2z61_A 160 INSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEG-K-CYSAIEFDE-----NLEKTILINGFSKLYAMTG 228 (370)
T ss_dssp EESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSS-C-CCCGGGTCT-----TCSSEEEEEESTTTTTCGG
T ss_pred EcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCC-C-CcCHHHccC-----CCCcEEEEecChhccCCcc
Confidence 999999999999966 8899999999999999999876654 2 245444421 3478999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||++++ +.+.+.+...... +.+++++|.++.+++.... .+++++.++.++++++++.+.|.+.|+++..+.+
T Consensus 229 ~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~ 305 (370)
T 2z61_A 229 WRIGYVISN-DEIIEAILKLQQNLFISAPTISQYAALKAFEKET--EREINSMIKEFDRRRRLVLKYVKDFGWEVNNPIG 305 (370)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCB
T ss_pred ceEEEEEEC-HHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHcCCeecCCCc
Confidence 999999994 5666665544332 4578899999888887511 4457778888999999999999988998888889
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
|+|+|++++. + ..+++..|++++||.+.||+.|+..+++++||+++ .+++++++++++|+++++
T Consensus 306 ~~~~~~~~~~--~------~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~-~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 306 AYYVFPNIGE--D------GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA-NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp TTEECCBCSS--C------HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred ceEEEEecCC--C------HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHh
Confidence 9999999874 1 23678888866799999999886544679999999 699999999999998764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=362.08 Aligned_cols=326 Identities=16% Similarity=0.202 Sum_probs=263.8
Q ss_pred ccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHH--HHHHHHhcC--C----------CCeEEEeCC
Q 011570 86 GIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAH--ETVAFCLAD--P----------GDAFLVPTP 151 (483)
Q Consensus 86 ~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al--~~~~~~l~~--~----------gd~Vlv~~P 151 (483)
...+|++..|.++||++||++++ +++++|++|+|+++++ .+++.++++ | ||+|++++|
T Consensus 70 ~~~~Y~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p 141 (427)
T 3ppl_A 70 DVRNYGGLDGIVDIRQIWADLLG--------VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVP 141 (427)
T ss_dssp BTTSSCCSSCCHHHHHHHHHHHT--------SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEES
T ss_pred hhcCCCCCCCcHHHHHHHHHHhC--------CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCC
Confidence 45789999999999999999985 6789999999999999 588888877 6 899999999
Q ss_pred CCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHH-h
Q 011570 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFI-N 229 (483)
Q Consensus 152 ~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a-~ 229 (483)
+|..+...++.. |.+++.+|+++++ +|++.|+++++. +++++|+++ +||||||.+++.+++++|+++| +
T Consensus 142 ~y~~~~~~~~~~-g~~~~~v~~~~~g---~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~ 212 (427)
T 3ppl_A 142 GYDRHFSITERF-GFEMISVPMNEDG---PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETA 212 (427)
T ss_dssp CCHHHHHHHHHT-TCEEEEEEEETTE---ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCS
T ss_pred CcHHHHHHHHHc-CCEEEEeCCCCCC---CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhh
Confidence 999999999886 9999999998643 999999998842 378888755 7899999999999999999999 9
Q ss_pred hcCcEEEEccccccCccCCCC-CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--
Q 011570 230 EKNIHLVCDEIYAATVFTKES-SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-- 306 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~-~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-- 306 (483)
++|++||+||+|.++.|.+.. .+.++..+.... ...+++++++||||. +++|+|+||+++ ++.+.+.+.....
T Consensus 213 ~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~ 288 (427)
T 3ppl_A 213 APDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAA--GNPNRFWAFTSTSKI-TLAGAGVSFFLT-SAENRKWYTGHAGIR 288 (427)
T ss_dssp STTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT--TCTTSEEEEEESTTT-SCTTSSCEEEEC-CHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcccccCCCCCCccchhhhhhcc--CCCCcEEEEechhhc-cCcCccEEEEEc-CHHHHHHHHHHhhcc
Confidence 999999999999988776521 233555542100 034789999999999 679999999999 4666666554432
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----C-CceeecCCceEEEeeecCchhhccChHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----V-GIGCLKSNAGLFLWMDLHHLLKEQTYEA 381 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~ 381 (483)
.+.++++.|.+++.++.+.+.+.+++++.++.++++++.+.+.|.+ . ++.+..|.+|+|+|++++.. +
T Consensus 289 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~-~------ 361 (427)
T 3ppl_A 289 GIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG-T------ 361 (427)
T ss_dssp CSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT-C------
T ss_pred cCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc-h------
Confidence 3557899999999999984445777888889999998888888765 2 57778888999999999853 1
Q ss_pred HHHHHHHHHHhcCeEeeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 382 EMALWRVIINEVKLNVSP-GSSFHC---PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~p-g~~f~~---~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
..++...+ .++||.++| |..|.. ..++++||+++..+++++++++++|++++++...+
T Consensus 362 ~~~~~~~l-~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~ 423 (427)
T 3ppl_A 362 ASRVAELA-KEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAE 423 (427)
T ss_dssp HHHHHHHH-HHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22555554 567999999 555642 24689999998668999999999999999877544
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=356.28 Aligned_cols=359 Identities=18% Similarity=0.291 Sum_probs=283.0
Q ss_pred Ccccccchhhhh---cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 47 GVIQMGLAENLL---CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 47 ~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
++|||+.+.+.. +++.+.+++.+.... . ..... |++..|..++|+++|+++.+.+| +++++++|+
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~-y~~~~~~~~l~~~la~~~~~~~g--~~~~~~~v~ 102 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEK------E---PKSVM-YTPANGIPELREELAAFLKKYDH--LEVSPENIV 102 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHH------C---GGGGS-CCCTTCCHHHHHHHHHHHHHHSC--CCCCGGGEE
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhh------c---ccccc-CCCCCCCHHHHHHHHHHHHHhcC--CCCCcceEE
Confidence 578887775432 445555554431000 0 01235 88888999999999999977666 446789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++++ .+|++.|+++++....++.++++|
T Consensus 103 ~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~v 178 (407)
T 2zc0_A 103 ITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQL-GAKIEGVPVDND---GMRVDLLEEKIKELKAKGQKVKLI 178 (407)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETT---EECHHHHHHHHHHHHHTTCCEEEE
T ss_pred EecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHc-CCEEEEcccCCC---CCCHHHHHHHHHhhhcccCCceEE
Confidence 9999999999999999999999999999999999888875 999999998753 389999999987432223468887
Q ss_pred -EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 204 -LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 204 -~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+. ..+++++++||||.+|
T Consensus 179 ~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~------~~~~~i~~~s~sK~~~- 250 (407)
T 2zc0_A 179 YTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEG-GDIVPLKALD------NEGRVIVAGTLSKVLG- 250 (407)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSC-SSCCCGGGGC------SSCCEEEEEESTTTTC-
T ss_pred EECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCC-CCCCChhhcC------CCCCEEEEcccccccC-
Confidence 578999999999999999999999999999999999999887765 4444555442 2368899999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHH-HHHHHHHHHHHHHHHHHHHhhhcC--Ccee
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVE-KFIAESAKRIAERHKAFTWGLSQV--GIGC 357 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~--gi~~ 357 (483)
+|+|+||++++ +.+.+.+...... ...+++.|.++..++.... .. +++++.+++++++++++.+.|.+. |+++
T Consensus 251 ~G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (407)
T 2zc0_A 251 TGFRIGWIIAE-GEILKKVLMQKQPIDFCAPAISQYIALEYLKRGY-FEKYHLEGALLGYKEKRDIMLKALENHLPNAEF 328 (407)
T ss_dssp TTSCCEEEECC-HHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH-HHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCB
T ss_pred CCcceEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999994 6666666554332 3368889999988887653 24 567778888899999999999874 6887
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
..+.+|+|+|++++...+ ..++++.|++++||.+.||..|... .++++||+++..+++++++++++|+++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 329 TKPIAGMFVMFFLPEGAD------GISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp CCCSBSSEEEEECSTTCC------HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHH
T ss_pred ecCCCcEEEEEEcCCCCC------HHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 778888999999975322 2367888887679999999988653 45799999985578999999999999987
Q ss_pred Hh
Q 011570 436 KN 437 (483)
Q Consensus 436 ~~ 437 (483)
+.
T Consensus 403 ~~ 404 (407)
T 2zc0_A 403 EK 404 (407)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=364.76 Aligned_cols=354 Identities=19% Similarity=0.253 Sum_probs=290.8
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.+++.++ ++.+.+++.+... .....|++. ..++++++++++.+.++ +++++++|+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~l~~~l~~~~g--~~~~~~~v~ 123 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGR------------EHIFGYNYF--NDDLYQAVIDWERKEHD--YAVVKEDIL 123 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHH------------HCCSSCBCC--CHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCC--CHHHHHHHHHHHHHHhC--CCCCHHHEE
Confidence 457899999987775 4555555543110 123457654 38999999999998887 456789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.+++++||+|+++.|+|.++...+... |.+++.+|++ .+++|.+|++.|++++.+ .++++
T Consensus 124 ~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~le~~i~~-----~~~~~ 197 (421)
T 3l8a_A 124 FIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLN-DHRLVENSLQIINGRFEIDFEQLEKDIID-----NNVKI 197 (421)
T ss_dssp EESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHT-TEEEEEEECEEETTEEECCHHHHHHHHHH-----TTEEE
T ss_pred EcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHC-CCEEEeccccccCCCeeeCHHHHHHHhhc-----cCCeE
Confidence 9999999999999999999999999999999999988876 9999999986 566788999999999974 37999
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++ ..+.++..+..+ ..++++++.|+||.+|+
T Consensus 198 vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~----~~~~~i~~~s~sK~~g~ 272 (421)
T 3l8a_A 198 YLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFG-NTHHSLNTLDAS----YKDFTIILSSATKTFNI 272 (421)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSCTT----GGGTEEEEECSHHHHTC
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCccHHHcCch----hcCcEEEEEeChhhccC
Confidence 9999999999999999999999999999999999999999987776 555565554321 13678999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhh---hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMS---SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL 358 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~---~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~ 358 (483)
+|+|+||++++++.+.+.+.... .++..+++++.++.+++... .+++++.++.++++++++.+.|+++ ++.+.
T Consensus 273 ~G~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~ 349 (421)
T 3l8a_A 273 AGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG---KPWLEELKTVIEGNIKLVIKELEAKTKIKVM 349 (421)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred chhheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHhCCCceEe
Confidence 99999999996577777665443 23457888888888777632 3457788888999999999999885 89999
Q ss_pred cCCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.+.+++++|++++.. .+ ..++...|++++||.+.||..|+..+++++||+++ .+++++++++++|+++++
T Consensus 350 ~~~~~~~~~v~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~-~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 350 EPEGTYLVWLDFSAYAIA------QPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA-TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp CCSBSSEEEEECGGGTCC------TTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHC-
T ss_pred CCCeeEEEEEeccccCCC------HHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 999999999999752 22 12678888878899999999998666789999998 699999999999998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=349.78 Aligned_cols=321 Identities=17% Similarity=0.293 Sum_probs=261.7
Q ss_pred CCcccccchhhhhcHH-HHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLCHE-LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.|+|+++++ .+ . .....+|++. +..+||+++|++++ +++++|++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v-----a--------------~~~~~~Y~~~-~~~~lr~~la~~~~--------~~~~~v~~ 80 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL-----T--------------QQTLNRYPEC-QPKAVIENYAQYAG--------VKPEQVLV 80 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC-----C--------------CCCTTSCCCS-SCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CceEEeeCCCCCCCCCHhH-----h--------------hhhhccCCCc-cHHHHHHHHHHHhC--------CChHHEEE
Confidence 4689999999988642 12 1 1234679876 48999999999986 57889999
Q ss_pred eCChhHHHHHHHHHhcCCC-CeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPG-DAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~g-d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++| |+|+++.|+|+.+...++.. |.+++.+++++ +|.+|++++++++. ++++|
T Consensus 81 ~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~-------~~~~v 150 (356)
T 1fg7_A 81 SRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTLD--NWQLDLQGISDKLD-------GVKVV 150 (356)
T ss_dssp ESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCCT--TSCCCHHHHHTSCT-------TEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHc-CCEEEEeeCCC--CCCCCHHHHHHHhc-------CCCEE
Confidence 9999999999999999999 99999999999999988886 99999999863 57899999987763 57899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+ +|++||+||+|.++.. . .++..+.. ..+++++++||||.||++
T Consensus 151 ~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~----~~~~~~~~-----~~~~~i~~~s~sK~~g~~ 219 (356)
T 1fg7_A 151 YVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP-Q----ASLAGWLA-----EYPHLAILRTLSKAFALA 219 (356)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-G----GCSGGGTT-----TCTTEEEEEESSSTTCCG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-C----CcHHHHHh-----hCCCEEEEecchHhhcCc
Confidence 99999999999999999999999999 9999999999987531 1 22233322 357899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~ 362 (483)
|+|+||+++ ++.+.+.+......+++++++|.++.+++.+.++ +++++.+++++++++++.+.|++++ +....+.+
T Consensus 220 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 296 (356)
T 1fg7_A 220 GLRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSE 296 (356)
T ss_dssp GGCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCS
T ss_pred hhhhEEEEe-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCC
Confidence 999999999 5667777766655567899999999999986543 2467788889999999999999885 32334556
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC-CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP-GSSFHCPNPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p-g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
|+|+|++++. ..++++.| .++||.++| |..|+. ++++||+++ +++++++++++|++
T Consensus 297 ~~~~~~~~~~---------~~~l~~~L-~~~gI~v~~~g~~~~~--~~~iRis~~--~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 297 TNYILARFKA---------SSAVFKSL-WDQGIILRDQNKQPSL--SGCLRITVG--TREESQRVIDALRA 353 (356)
T ss_dssp SSEEEEEETT---------HHHHHHHH-HHTTEECEECTTSTTC--TTEEEEECC--CHHHHHHHHHHHHT
T ss_pred CeEEEEECCC---------HHHHHHHH-HHCCEEEEECCCCCCC--CCeEEEEeC--CHHHHHHHHHHHHh
Confidence 7899999871 23677777 467999999 887763 469999998 68999999998875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=347.52 Aligned_cols=336 Identities=17% Similarity=0.214 Sum_probs=276.6
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.+.++|+|+.++|+++ ++.+.+++.+.. .....|++ .+..+||+++|++++ +++++|
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 71 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAV-------------VKANRYAK-NEILMLGNKLAAHHQ--------VEAPSI 71 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTG-------------GGTTSCCH-HHHHHHHHHHHHHTT--------SCGGGE
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHH-------------hhCcCCCC-CchHHHHHHHHHHhC--------CChHHE
Confidence 3567899999999985 556666665421 13456754 478999999999986 578999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+++++ ++.+|++.|++++++ .+++++
T Consensus 72 ~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~--~~~~d~~~l~~~l~~----~~~~~~ 144 (354)
T 3ly1_A 72 LLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIA-GMKVTKVKMLD--NWAFDIEGLKAAVAA----YSGPSI 144 (354)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECCCT--TSCCCHHHHHHHHHT----CSSCEE
T ss_pred EEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHHHhcc----CCCCCE
Confidence 99999999999999999999999999999999999988876 99999999874 478999999999873 137899
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCC-CeEEEEecCccccC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNR-NLIHIVYSLSKDMG 281 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~-~~vi~~~S~SK~~g 281 (483)
|++++||||||.+++.+++.+|+++| ++|+++|+||+|.++.+.+ .. .+...... .. +++++++||||.+|
T Consensus 145 v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~-~~-~~~~~~~~-----~~~~~~i~~~s~sK~~g 216 (354)
T 3ly1_A 145 VYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDP-RF-RSISPMIT-----QGAENIILLKTFSKIHA 216 (354)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCT-TC-CCSHHHHH-----TTCSSEEEEEESSSTTC
T ss_pred EEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccc-cc-CCHHHHhh-----hcCCCEEEEeeChhhcc
Confidence 99999999999999999999999999 8999999999999876654 32 34344333 34 78999999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
++|+|+||+++ ++.+.+.+......+.++++.|.++.+++.+.. ++++.+++++++++++.+.|.++|+.+.++.
T Consensus 217 ~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 291 (354)
T 3ly1_A 217 MAGMRVGYAVA-HPTVIALMGRYVAGEKINFSGVDAALASMNDSA----FITYSKKSNDVSRQILLKALEDLKLPYLPSE 291 (354)
T ss_dssp CGGGCCEEEEC-CHHHHHHHGGGTTCSCCCHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCCCC
T ss_pred Chhhhheeeec-CHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCeECCCC
Confidence 99999999999 667777766665567789999999999998754 4677788889999999999988888887665
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+ +|+|++++. + ..++...|. ++||.++ |..++ .++++||+++ +++++++++++|++++++
T Consensus 292 ~-~~~~~~~~~--~------~~~~~~~l~-~~gi~v~-g~~~~--~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 292 G-NFVFHQLVV--P------LKDYQTHMA-DAGVLIG-RAFPP--ADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp S-SEEEEECSS--C------HHHHHHHHH-HTTEECC-CCCTT--CTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred c-eEEEEECCC--C------HHHHHHHHH-HCCEEEe-ecCCC--CCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 4 689999975 1 236777776 4699999 77553 5789999997 789999999999998864
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=358.49 Aligned_cols=351 Identities=20% Similarity=0.341 Sum_probs=283.7
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++ +... .....|++..|..++|+++|++++..+| +++++++|++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~------------~~~~~y~~~~g~~~l~~~la~~~~~~~g--~~~~~~~v~~ 107 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENK------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVLV 107 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTC------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEEE
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHh------------cCCCCCCCCCCcHHHHHHHHHHHHHHhC--CCCCHHHEEE
Confidence 46789999988754 34455554 3111 0134688888899999999999998766 4567899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++++++|.+ ++.|++++.+ ++++|+
T Consensus 108 ~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~-~~~l~~~l~~------~~~~v~ 179 (409)
T 2gb3_A 108 TNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEGFAI-PQNLESFINE------RTKGIV 179 (409)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGTSCC-CTTGGGGCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEeccCCCCCCcc-HHHHHHhhCc------CCeEEE
Confidence 999999999999999999999999999999999988876 99999999875456666 8888887753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++|+||||.+++.+++++|+++|+++|++||+||+|.++.+++ . +.++ +.. ..+++++++|+||.+|++|
T Consensus 180 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~-~~~~--~~~-----~~~~~i~~~s~sK~~g~~G 250 (409)
T 2gb3_A 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-E-FASA--LSI-----ESDKVVVIDSVSKKFSACG 250 (409)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-C-CCCG--GGS-----CCTTEEEEEESTTTTTCGG
T ss_pred ECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-C-CCCc--ccc-----CCCCEEEEecchhccCCcc
Confidence 99999999999999999999999999999999999999876654 2 2333 211 1367899999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcC-CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee-ecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFG-LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC-LKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~-~~~~~ 362 (483)
+|+||++++++.+.+.+......+ .+++++|.++.++++.. ..++++.++.++++++++.+.|++.|+++ ..+.+
T Consensus 251 ~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~ 327 (409)
T 2gb3_A 251 ARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSG 327 (409)
T ss_dssp GCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSB
T ss_pred ceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCe
Confidence 999999996636666665544444 67889999988888653 34567778888999999999999889888 77888
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHh-----cCeEeeCCCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINE-----VKLNVSPGSSFHC---PNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v~pg~~f~~---~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
|+|+|++++. .+ ..+++..|+++ +||.+.||..|+. .+++++||+++ .+++++++++++|++++
T Consensus 328 ~~~~~~~~~~-~~------~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l 399 (409)
T 2gb3_A 328 AFYITAELPV-ED------AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGL 399 (409)
T ss_dssp SSEEEEECSS-SC------HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCC-CC------HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHH
Confidence 9999999871 11 23678888876 6999999988864 23679999998 79999999999999999
Q ss_pred HHhhh
Q 011570 435 LKNVE 439 (483)
Q Consensus 435 ~~~~~ 439 (483)
++.+.
T Consensus 400 ~~~~~ 404 (409)
T 2gb3_A 400 KMFCS 404 (409)
T ss_dssp HHHHC
T ss_pred HHhhh
Confidence 87643
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=355.72 Aligned_cols=349 Identities=19% Similarity=0.309 Sum_probs=279.0
Q ss_pred Ccccccchhhhh---cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 47 GVIQMGLAENLL---CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 47 ~~i~l~~~~n~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
++|+|+.+.+.. +++.+.+++.+.... .......|++..|..+||++++++++ +++++|+
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~---------~~~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~v~ 95 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILRE---------KGEVALQYSPTEGYAPLRAFVAEWIG--------VRPEEVL 95 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHH---------HHHHHTSCCCTTCCHHHHHHHHHHHT--------SCGGGEE
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHh---------cchhhhCCCCCCCCHHHHHHHHHHhC--------CChhhEE
Confidence 578887764322 445555555431000 00123578887899999999999985 4678999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++.+++ .+|+++|++++++ .++++|
T Consensus 96 ~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~---~~d~~~l~~~l~~-----~~~~~v 166 (397)
T 2zyj_A 96 ITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQ-GPRFLTVPAGEE---GPDLDALEEVLKR-----ERPRFL 166 (397)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETT---EECHHHHHHHHHH-----CCCSCE
T ss_pred EeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHc-CCEEEecCcCCC---CCCHHHHHHHHhh-----cCCeEE
Confidence 9999999999999999999999999999999999988875 999999998753 3899999999875 267887
Q ss_pred -EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccC--CCeEEEEecCcccc
Q 011570 204 -LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACN--RNLIHIVYSLSKDM 280 (483)
Q Consensus 204 -~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~--~~~vi~~~S~SK~~ 280 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+.. . .+++++++|+||.+
T Consensus 167 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~-----~~~~~~~i~~~s~sK~~ 240 (397)
T 2zyj_A 167 YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGE-ARLPSLFELAR-----EAGYPGVIYLGSFSKVL 240 (397)
T ss_dssp EECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSS-CCCCCHHHHHH-----HHTCCCEEEEEESTTTT
T ss_pred EECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCC-CCCCchhhhCc-----ccCCCeEEEEecccccc
Confidence 578999999999999999999999999999999999999987765 44456666532 1 16789999999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cc
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GI 355 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi 355 (483)
| +|+|+||++++ +.+.+.+..... .+.+++++|.++..++....+ +++++.++.++++++++.+.|++. |+
T Consensus 241 ~-~G~r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~g~ 316 (397)
T 2zyj_A 241 S-PGLRVAFAVAH-PEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--ERLERVRRVYREKAQAMLHALDREVPKEV 316 (397)
T ss_dssp C-GGGCCEEEECC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred c-ccceeEEEecC-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 9 99999999994 666665544332 244688999999999987643 567888889999999999999875 78
Q ss_pred eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 356 GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 356 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
.+..+.+|+|+|++++...+ ..++++.|+++ ||.+.||..|+.. .++++||+++..+++++++++++|+++
T Consensus 317 ~~~~~~~g~~~~~~~~~~~~------~~~~~~~l~~~-gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~ 389 (397)
T 2zyj_A 317 RYTRPKGGMFVWMELPKGLS------AEGLFRRALEE-NVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRA 389 (397)
T ss_dssp EECCCSBSSEEEEECSTTCC------HHHHHHHHHHT-TEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred EEccCCccEEEEEEcCCCCC------HHHHHHHHHHC-CCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 88778889999999975322 23677888765 9999999988643 467999999866799999999999999
Q ss_pred HHHhh
Q 011570 434 MLKNV 438 (483)
Q Consensus 434 l~~~~ 438 (483)
+++..
T Consensus 390 l~~~~ 394 (397)
T 2zyj_A 390 LKGLL 394 (397)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=355.31 Aligned_cols=342 Identities=22% Similarity=0.338 Sum_probs=273.8
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
++|+|+.++++++ ++.+.+++.+... ....|++..|..+||++++++++ +++++|++|
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~~--------~~~~~v~~~ 84 (381)
T 1v2d_A 26 GAVNLGQGFPSNPPPPFLLEAVRRALG-------------RQDQYAPPAGLPALREALAEEFA--------VEPESVVVT 84 (381)
T ss_dssp TCEECCCCSCSSCCCHHHHHHHHHHTT-------------TSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHH-------------HhcCCCCCCCCHHHHHHHHHhcC--------CChhhEEEc
Confidence 5789999988764 4555555544211 13468887789999999999976 567899999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC--CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD--SSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.++++ ++ ++.+|++.|++++.+ ++++|
T Consensus 85 ~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~-~~~~d~~~l~~~l~~------~~~~v 156 (381)
T 1v2d_A 85 SGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPE-GFRLDLSALEKALTP------RTRAL 156 (381)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETT-EEECCHHHHHTTCCT------TEEEE
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHc-CCEEEEEeCCCCCc-cCCcCHHHHHHhcCc------CCEEE
Confidence 99999999999999999999999999999999888875 9999999986 22 478999999988742 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++|+||||.+++.+++++|+++|+++|++||+||+|.++.+ + ....++..+ . .++++++.|+||.+|++
T Consensus 157 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g-~~~~~~~~~-~------~~~~~~~~s~sK~~~~~ 227 (381)
T 1v2d_A 157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-G-ERPRRLREF-A------PERTFTVGSAGKRLEAT 227 (381)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-S-SCCCCHHHH-C------TTTEEEEEEHHHHTTCG
T ss_pred EECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-C-CCCCCHHHh-c------CCCEEEEeechhhcCCc
Confidence 9999999999999999999999999999999999999998766 3 333455554 2 36889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... .+.++++.|.++..++....+ .+++++.+++++++++++.+.|++.|+++..+.
T Consensus 228 G~r~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~ 305 (381)
T 1v2d_A 228 GYRVGWIVGP-KEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPE 305 (381)
T ss_dssp GGCCEEEECC-TTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCS
T ss_pred ccceEEEEeC-HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHHHHHHHHCCCEecCCC
Confidence 9999999995 444554443332 355788899888888764321 345677888899999999999999999998888
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC--CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC--PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~--~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+|+|+|++++.. + ...+++++||.+.||..|+. ..++++||+++. +++++++++++|++++++.++
T Consensus 306 ~~~~~~~~~~~~----------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 306 GTYFLMAELPGW----------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp BSSEEEEECTTC----------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred cceEEEEecChH----------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 899999999752 1 34456678999999998864 246799999986 999999999999999877654
Q ss_pred c
Q 011570 440 A 440 (483)
Q Consensus 440 ~ 440 (483)
.
T Consensus 374 ~ 374 (381)
T 1v2d_A 374 A 374 (381)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=361.90 Aligned_cols=346 Identities=14% Similarity=0.182 Sum_probs=271.3
Q ss_pred CCcccccch---hhhhc---HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLA---ENLLC---HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~---~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|||+.+ ++... ++.+.+++.+... . .....|++..|.++||+++++++....+ ..+++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~----------~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~--~~~~~ 115 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVE----------A-GLPRGYLPIDGIAAYDASVQKLLLGDDS--PLIAA 115 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH----------T-CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhc----------c-CCCCCCCCCCCcHHHHHHHHHHhcCCCc--ccccc
Confidence 377999999 34332 2555555543110 0 1245799889999999999999975433 22367
Q ss_pred C--cEEEeCChhHHHHHH--HHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 120 D--RIVMSGGATGAHETV--AFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 120 ~--~i~it~G~~~al~~~--~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
+ +|++|+|+++++..+ +.+++++||+|++++|+|..+...++.. |.+++.+++.++.++.+|++.|++.+++.
T Consensus 116 ~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 192 (420)
T 4f4e_A 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMA-GFEVVAYPYYDAKTNGVNFDGMLAALNGY-- 192 (420)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHT-TCCEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred CceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEeeeeccccCccCHHHHHHHHHhC--
Confidence 8 999999999999999 4566899999999999999999988886 99999999844457889999999998632
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
.++++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.++.+....++..+.. ..+++++++|
T Consensus 193 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S 266 (420)
T 4f4e_A 193 -EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAA-----ANLNVFVSSS 266 (420)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHH-----TTCCEEEEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHh-----cCCCEEEEEe
Confidence 2367899999999999999999999999999999999999999999987764123345555543 4588999999
Q ss_pred CccccCCCCceEEEEEe--cChHHHHH----HHHh--hhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYS--YNDQVVSC----ARKM--SSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKRIAERHK 344 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~--~~~~l~~~----~~~~--~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~ 344 (483)
|||.||++|+|+||+++ +++.+.+. ++.. ..+..++.++|.+++.++.+... .++++++.+++++++++
T Consensus 267 ~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (420)
T 4f4e_A 267 FSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRN 346 (420)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999974 34443332 2221 22344678899999888887542 24667888999999999
Q ss_pred HHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCH
Q 011570 345 AFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420 (483)
Q Consensus 345 ~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~ 420 (483)
++.+.|+++ |+.+..+++|+|+|+.++. +.+..+++++||.+.|+ .||+++..++
T Consensus 347 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gI~v~~~----------~Ris~~~~~~ 405 (420)
T 4f4e_A 347 GLVERLKAAGIERDFSFINAQRGMFSYSGLTS-----------AQVDRLREEFGIYAVST----------GRICVAALNT 405 (420)
T ss_dssp HHHHHHHHTTCSSCCTHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------SEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCceeECCCccEEEEeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEEecCCH
Confidence 999999987 7888889999999988752 34556677789999985 2999986688
Q ss_pred HHHHHHHHHHHHHH
Q 011570 421 RTMEIALSRITSFM 434 (483)
Q Consensus 421 e~l~~~l~~L~~~l 434 (483)
+++++++++|++++
T Consensus 406 ~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 406 RNLDVVANAIAAVL 419 (420)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999875
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=360.17 Aligned_cols=344 Identities=16% Similarity=0.156 Sum_probs=268.2
Q ss_pred Ccccccchhh-hh-c-H---HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAEN-LL-C-H---ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~n-~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
++|+|+.+.+ .. + + +.+.+++..... ......|++..|.+++|+++|++++..+| ..++++
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~-----------~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~ 95 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA-----------KKMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcc-----------cccccCCCCCCCCHHHHHHHHHHhcCCCc--cccccC
Confidence 4689998874 22 2 1 234444433100 01345798888999999999999987666 446799
Q ss_pred cEEE--eCChhHHHHHHHHHhc---CCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 121 RIVM--SGGATGAHETVAFCLA---DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 121 ~i~i--t~G~~~al~~~~~~l~---~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
+|++ |+|+++++.+++.++. +|||+|++++|+|..+...++.. |.+++.+|++++.++.+|++.+++.+++.
T Consensus 96 ~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 172 (401)
T 7aat_A 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISKI-- 172 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTS--
T ss_pred ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHc-CCeeEeeeeeccccCccCHHHHHHHHHhC--
Confidence 9987 9999999998887664 99999999999999999999886 99999999865557899999988888641
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC--CcchHHHhhhhccccCCCeEEEE
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~--~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+.+ . ...++..+.. ..++++++
T Consensus 173 -~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~-~~~~~~~~~~~~~-----~~~~~i~~ 245 (401)
T 7aat_A 173 -PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD-INRDAWALRHFIE-----QGIDVVLS 245 (401)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC-HHHHTHHHHHHHH-----TTCCCEEE
T ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCC-ccccHHHHHHHHh-----cCCcEEEE
Confidence 2468899999999999999999999999999999999999999999876654 2 2234444333 45789999
Q ss_pred ecCccccCCCCceEEEEEe--cChH----HHHHHHHhh--hcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYS--YNDQ----VVSCARKMS--SFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAER 342 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~--~~~~----l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~ 342 (483)
+||||.||++|+|+||+++ .++. +...+.... ....++...|.+++.++.++.+. .+++++.+++++++
T Consensus 246 ~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T 7aat_A 246 QSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISM 325 (401)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 2333 333333322 22446677888888888775432 45577888899999
Q ss_pred HHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccC
Q 011570 343 HKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418 (483)
Q Consensus 343 ~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~ 418 (483)
++++.+.|.++| +++.+|++|+|+|++++. +++..+++++||.+.|+ +||+++..
T Consensus 326 r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gi~v~~~----------~Ris~~~~ 384 (401)
T 7aat_A 326 RTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGV 384 (401)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGC
T ss_pred HHHHHHHHHhcCCCCCCceecCCcceEEecCCCH-----------HHHHHHHHhCCEeccCC----------CeEEeccC
Confidence 999999999875 777789999999987752 44577778889999754 69999876
Q ss_pred CHHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSFM 434 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l 434 (483)
+++++++++++|++++
T Consensus 385 ~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 385 ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp CTTTHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHh
Confidence 7777999999998875
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=346.67 Aligned_cols=329 Identities=17% Similarity=0.255 Sum_probs=272.3
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++|+++ ++.+.+++.+.. .....|++ .+..++|++++++++ +++++|++
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~lr~~la~~~~--------~~~~~v~~ 89 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSS-------------VETEIYPD-GWASSLRKEVADFYQ--------LEEEELIF 89 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCB-------------SCCCBC-----CHHHHHHHHHHHT--------CCGGGEEE
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHH-------------HHhhcCCC-cchHHHHHHHHHHhC--------CChhhEEE
Confidence 47899999999986 566777666521 23456764 578999999999987 57899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+++++ ++.+|++++++++.+ ++++|+
T Consensus 90 ~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~ 160 (363)
T 3ffh_A 90 TAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIE-GAEVREIPLLQ--DGEHDLEGMLNAIDE------KTTIVW 160 (363)
T ss_dssp ESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHH-TCEEEEEECCT--TSCCCHHHHHHHCCT------TEEEEE
T ss_pred eCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCC--CCCcCHHHHHHhccc------CCCEEE
Confidence 999999999999999999999999999999999988886 99999999875 578999999998853 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
+++||||||.+++.+++.+|++.|++ |+++|+||+|.++.+ + .. .+...... ..+++++++||||.+|++|
T Consensus 161 ~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~-~~-~~~~~~~~-----~~~~~i~~~s~sK~~g~~G 231 (363)
T 3ffh_A 161 ICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVT-P-QP-EKHEKLVR-----TYKNLIITRTFSKIYGLAS 231 (363)
T ss_dssp EESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-S-CC-CCCGGGGG-----TCTTEEEEEESSSTTCCSS
T ss_pred EeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-c-cc-cCHHHHhh-----cCCCEEEEeechhhhcCch
Confidence 99999999999999999999998887 999999999998766 3 22 23333332 4578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-VGIGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~gi~~~~~~~g 363 (483)
+|+||+++ ++.+.+.+......+.+++++|.++..++.+.+ ++++.+++++++++++.+.|++ .|+++.++.+
T Consensus 232 ~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~- 305 (363)
T 3ffh_A 232 ARVGYGIA-DKEIIRQLNIVRPPFNTTSIGQKLAIEAIKDQA----FIGECRTSNANGIKQYEAFAKRFEKVKLYPANG- 305 (363)
T ss_dssp CCCEEEEE-CHHHHHHHHHTCCSCCCBHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCS-
T ss_pred hceeeeec-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHhhCCCceECCCCC-
Confidence 99999999 677777776666566789999999999987653 4677788889999999999998 6998877665
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|++++. + ..++.+.|.+ +||.+++|..|+. ++++||+++ +++++++++++|+++
T Consensus 306 ~~~~~~~~~--~------~~~~~~~l~~-~gi~v~~g~~~~~--~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 306 NFVLIDLGI--E------AGTIFSYLEK-NGYITRSGAALGF--PTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp SEEEEECSS--C------HHHHHHHHHH-TTEECEETTTTTC--TTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred eEEEEECCC--C------HHHHHHHHHH-CCeEEEeCccCCC--CCeEEEECC--CHHHHHHHHHHHHHh
Confidence 589999974 1 2367777775 6999999998864 679999998 899999999999875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=354.24 Aligned_cols=345 Identities=16% Similarity=0.185 Sum_probs=269.7
Q ss_pred CCcccccchh---hhhc-H--HHHHHHHhc-CCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC
Q 011570 46 NGVIQMGLAE---NLLC-H--ELVEDWLMN-NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118 (483)
Q Consensus 46 ~~~i~l~~~~---n~~~-~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~ 118 (483)
.++|+|+.+. +..+ + +.+.+++.+ .... .....|++..|..++|+++++++....+ ..++
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~ 92 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-----------HGASLYLPMEGLNCYRHAIAPLLFGADH--PVLK 92 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-----------CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-----------cccccCCCCCchHHHHHHHHHHHhcCCc--cccc
Confidence 4689999993 3332 2 455554433 1110 1235798888999999999999985433 2236
Q ss_pred CC--cEEEeCChhHHHHHHH--HHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 119 PD--RIVMSGGATGAHETVA--FCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 119 ~~--~i~it~G~~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
++ +|++|+|+++++..++ .+++++||+|+++.|+|..+...++.. |.+++.+++.++.++.+|++.|++++++.
T Consensus 93 ~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 170 (397)
T 3fsl_A 93 QQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKTL- 170 (397)
T ss_dssp TTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHT-TCCEEEECCEETTTTEECHHHHHHHHTTC-
T ss_pred ccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHc-CCceEEEeeeeccCCcCcHHHHHHHHHhC-
Confidence 88 9999999999999995 456799999999999999999988886 99999999854457889999999998632
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.++......++..+.. ..+++++++
T Consensus 171 --~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~ 243 (397)
T 3fsl_A 171 --QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIAS-----AGLPALVSN 243 (397)
T ss_dssp --CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHH-----TTCCEEEEE
T ss_pred --CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHh-----cCCCEEEEe
Confidence 2367889999999999999999999999999999999999999999987663123345555543 458899999
Q ss_pred cCccccCCCCceEEEEEe--cChHHHH-HHHHh-----hhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYS--YNDQVVS-CARKM-----SSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKRIAERH 343 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~--~~~~l~~-~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~~~ 343 (483)
||||.+|++|+|+||+++ .+..+.. ..... ..+..++.++|.+++.++.+... ..+++++.++++++++
T Consensus 244 S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 323 (397)
T 3fsl_A 244 SFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMR 323 (397)
T ss_dssp ECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 3444333 22222 23344578899999988887542 1456788889999999
Q ss_pred HHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCC
Q 011570 344 KAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMD 419 (483)
Q Consensus 344 ~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~ 419 (483)
+++.+.|+++ |+.+..+++|+|+|++++. +....+++++||.+.||. ||+++..+
T Consensus 324 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~----------Ris~~~~~ 382 (397)
T 3fsl_A 324 QELVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLN 382 (397)
T ss_dssp HHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTC----------EEEGGGCC
T ss_pred HHHHHHHHhcCCCCCceeecCCceEEEecCCCH-----------HHHHHHHHhCCEEECCCC----------eEEEEecC
Confidence 9999999887 6888888999999988752 335566778899999873 99998667
Q ss_pred HHHHHHHHHHHHHH
Q 011570 420 DRTMEIALSRITSF 433 (483)
Q Consensus 420 ~e~l~~~l~~L~~~ 433 (483)
++++++++++|+++
T Consensus 383 ~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 383 TANVQRVAKAFAAV 396 (397)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhh
Confidence 78899999999875
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=358.98 Aligned_cols=349 Identities=21% Similarity=0.300 Sum_probs=263.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++.+.... .........|++..|..+||+++|+++. +| + +++++|++
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-------~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g--~-~~~~~v~~ 100 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIAR-------LSSPTTCRGYGPDFGLPALRQKLSEDFY--RG--F-VDAKEIFI 100 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHH-------HTSSSCCCCCCCTTCCHHHHHHHHHTTS--TT--S-SCGGGEEE
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhc-------ccccccccCCCCCCCCHHHHHHHHHHHH--cC--C-CCHHHEEE
Confidence 46789999988654 44444444331000 0000124578877899999999999964 23 3 57899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcE-EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQ-LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++. ++.+||+|+++.|+|+.+...++.. |.+ ++.+++++++++..|++.+ .++++|
T Consensus 101 ~~G~~~al~~~~~-~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~v 167 (400)
T 3asa_A 101 SDGAKVDLFRLLS-FFGPNQTVAIQDPSYPAYLDIARLT-GAKEIIALPCLQENAFFPEFPED-----------THIDIL 167 (400)
T ss_dssp ESCHHHHHHHHHH-HHCSSCEEEEEESCCHHHHHHHHHT-TCSEEEEEECCGGGTTCCCCCTT-----------CCCSEE
T ss_pred ccChHHHHHHHHH-HcCCCCEEEECCCCcHHHHHHHHHc-CCcceEecccchhcCcccChhhc-----------cCccEE
Confidence 9999999999765 4589999999999999999888875 998 9999987655666654321 268999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.+ ....++..+.. ..+++++++||||.+|++
T Consensus 168 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~sK~~g~~ 241 (400)
T 3asa_A 168 CLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDP-SLPKSIFEIPD-----ARFCAIEINSFSKPLGFA 241 (400)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCT-TSCSSGGGSTT-----GGGTEEEEEECCGGGTTT
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCC-CCCCchhhCCC-----CCCceEEEecchhhcCCc
Confidence 999999999999999999999999999999999999999866554 32234444321 135789999999999999
Q ss_pred CceEEEEEecChH-------HHHHHHH--hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011570 284 GFRVGIIYSYNDQ-------VVSCARK--MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG 354 (483)
Q Consensus 284 GlRiG~li~~~~~-------l~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 354 (483)
|+|+||++++++. +...... ...++.+++++|.++..++.+. ++++.++.++++++++.+.|++.|
T Consensus 242 GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~g 316 (400)
T 3asa_A 242 GIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSDLLRKALLATG 316 (400)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred chheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999996554 3333322 2234468899999888887643 356677788899999999999889
Q ss_pred ceeecCCceEEEeee-cCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 355 IGCLKSNAGLFLWMD-LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 355 i~~~~~~~g~f~~~~-l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+++..+.+|+|+|++ ++...+. .+++..|++++||.+.||+.|+..+++++||++. .+++++++++++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~-~~~e~i~~~l~~l~~~ 389 (400)
T 3asa_A 317 FEVFGGEHAPYLWVKPTQANISD------RDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSL-GKREDILAACERLQMA 389 (400)
T ss_dssp CEEEECSSSSEEEEECCCTTCCT------TTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECC-SCHHHHHHHHHHHHC-
T ss_pred CeeeCCCCceEEEEeccCCCCCH------HHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEee-CCHHHHHHHHHHHHHH
Confidence 998888888999999 7753222 2567778877899999999887555689999964 5899999999999988
Q ss_pred HHHh
Q 011570 434 MLKN 437 (483)
Q Consensus 434 l~~~ 437 (483)
+++.
T Consensus 390 ~~~~ 393 (400)
T 3asa_A 390 PALQ 393 (400)
T ss_dssp ----
T ss_pred HHhh
Confidence 7653
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=345.44 Aligned_cols=340 Identities=19% Similarity=0.267 Sum_probs=275.4
Q ss_pred CCCCCCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC
Q 011570 38 PYHPTKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT 116 (483)
Q Consensus 38 ~~~~~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~ 116 (483)
+|.+.. +.++|+|+.++|+++ ++.+.+++.+... . .....|++ .+..++|+++|++++ .+
T Consensus 23 ~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~-~~~~~l~~~la~~~g------~~ 83 (367)
T 3euc_A 23 AYHVPD-SHGLVKLDAMENPYRLPPALRSELAARLG----------E-VALNRYPV-PSSEALRAKLKEVMQ------VP 83 (367)
T ss_dssp CSSCCC-CTTCEECCSSCCCCCCCHHHHHHHHHHHH----------H-HHTTCSCC-CCHHHHHHHHHHHHT------CC
T ss_pred CCCCCC-CCCeeEccCCCCCCCCCHHHHHHHHHHhh----------h-hhhhcCCC-CcHHHHHHHHHHHhC------CC
Confidence 455544 567899999999885 4555555543100 0 13457876 478999999999986 21
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
++++|++|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.+++++ +|.+|++.|++++++.
T Consensus 84 -~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~~--- 156 (367)
T 3euc_A 84 -AGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFA-GLEFVGVPLRA--DFTLDRGAMLAAMAEH--- 156 (367)
T ss_dssp -TTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTT-TCEEEEEECCT--TSCCCHHHHHHHHHHH---
T ss_pred -CcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHc-CCeEEEecCCC--CCCCCHHHHHHHhhcc---
Confidence 6789999999999999999999999999999999999999888876 99999999875 6789999999999753
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++. . ....+ ... ..++++++.
T Consensus 157 --~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~--~-~~~~~---~~~-----~~~~~i~~~ 223 (367)
T 3euc_A 157 --QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA--Q-ESWMS---RLT-----DFGNLLVMR 223 (367)
T ss_dssp --CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS--S-CCSGG---GGG-----TCTTEEEEE
T ss_pred --CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc--c-cchHH---HHh-----hCCCEEEEe
Confidence 689999999999999999999999999999999 99999999999854 2 22222 112 357889999
Q ss_pred cCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
||||. +++|+|+||+++ ++.+.+.+......+..++++|.++..++...+ ++++.+++++++++++.+.|+++
T Consensus 224 s~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~ 297 (367)
T 3euc_A 224 TVSKL-GLAGIRLGYVAG-DPQWLEQLDKVRPPYNVNVLTEATALFALEHVA----VLDEQAAQLRAERSRVAEGMAAHG 297 (367)
T ss_dssp ECCCT-TSCSCCEEEEEE-CHHHHHHHGGGCCSSCCCHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHHHHTST
T ss_pred cchhh-cccccCceeeee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999 899999999999 566666665555556689999999999998733 46777888899999999999988
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|+++.++ +|+|+|++++. ..++.+.| .++||.+++|..|+...++++||+++ +++++++++++|+++
T Consensus 298 g~~~~~~-~~~~~~~~~~~---------~~~l~~~l-~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~ 364 (367)
T 3euc_A 298 GVTVFPS-AANFLLARVPD---------AAQTFDRL-LARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAAS 364 (367)
T ss_dssp TCEECCC-SSSEEEEECSC---------HHHHHHHH-HTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CcEECCC-CCeEEEEECCC---------HHHHHHHH-HHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHH
Confidence 8886554 55799999871 22566665 46799999999887656789999998 899999999999887
Q ss_pred HH
Q 011570 434 ML 435 (483)
Q Consensus 434 l~ 435 (483)
++
T Consensus 365 l~ 366 (367)
T 3euc_A 365 LQ 366 (367)
T ss_dssp TC
T ss_pred hc
Confidence 53
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=344.33 Aligned_cols=336 Identities=18% Similarity=0.269 Sum_probs=264.3
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|||+.++++++ ++.+.+++.+.. .....|++ .|..++|+++|++++ +++++|+
T Consensus 23 ~~~~idl~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~v~ 80 (364)
T 1lc5_A 23 PDQLLDFSANINPLGMPVSVKRALIDNL-------------DCIERYPD-ADYFHLHQALARHHQ--------VPASWIL 80 (364)
T ss_dssp GGGSEECSSCCCTTCCCHHHHHHHHHTG-------------GGGGSCCC-TTCHHHHHHHHHHHT--------SCGGGEE
T ss_pred ccceEEeccccCCCCCCHHHHHHHHHHH-------------HHhhcCCC-CCHHHHHHHHHHHHC--------cCHHHEE
Confidence 456899999988764 455666655421 12457865 478999999999986 5678999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.++ +||+|+++.|+|+.+...++.. |.+++.++++++++|.+ ++++.+.+. .++++|
T Consensus 81 ~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~-l~~~~~~~~------~~~~~v 150 (364)
T 1lc5_A 81 AGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQL-TDAILEALT------PDLDCL 150 (364)
T ss_dssp EESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCC-CTTHHHHCC------TTCCEE
T ss_pred ECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHHHHHc-CCeEEEEeCCcccccch-hHHHHHhcc------CCCCEE
Confidence 9999999999999998 7899999999999999988876 99999999875445554 454444332 367899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ .. ...+.. ..+++++++|+||.+|++
T Consensus 151 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~---~~~~~~-----~~~~~i~~~s~sK~~~~~ 221 (364)
T 1lc5_A 151 FLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE-TG---FIPALK-----DNPHIWVLRSLTKFYAIP 221 (364)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC-CC---SGGGCT-----TCTTEEEEEESTTTTTCT
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCc-cc---hhhHhc-----cCCCEEEEEECchhhcCC
Confidence 999999999999999999999999999999999999999865543 22 222222 347889999999999999
Q ss_pred CceEEEEE-ecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 284 GFRVGIIY-SYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li-~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
|+|+||++ + ++.+.+.+......+.+++++|.++.+++.... ++++.+++++++++++.+.|+++ |+++.++.
T Consensus 222 G~r~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 296 (364)
T 1lc5_A 222 GLRLGYLVNS-DDAAMARMRRQQMPWSVNALAALAGEVALQDSA----WQQATWHWLREEGARFYQALCQLPLLTVYPGR 296 (364)
T ss_dssp TTCCEEEECC-CHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHH----HHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS
T ss_pred ccceEEEEEC-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC
Confidence 99999999 6 666766666655556689999999999998743 46777888899999999999988 88877655
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|+|+|++++.. . .++++.|+ ++||.+.||..|+...++++||+++ +++++++++++|++++++.+
T Consensus 297 -g~~~~~~~~~~--~------~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~~~ 361 (364)
T 1lc5_A 297 -ANYLLLRCERE--D------IDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTGIA 361 (364)
T ss_dssp -SSEEEEEESCT--T------CCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC----
T ss_pred -CeEEEEECCCc--H------HHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhccc
Confidence 46889988741 1 14666666 4599999999887555789999997 68889999999988876653
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=368.29 Aligned_cols=358 Identities=19% Similarity=0.287 Sum_probs=276.5
Q ss_pred CcccccchhhhhcHH-HHHHHHhcCCCCccccccccccccccccCC-CCCCcHHHHHHHHHHHHhhhCCCCCcC-CCcEE
Q 011570 47 GVIQMGLAENLLCHE-LVEDWLMNNPKASICSAEGLNEFKGIAIFQ-DYHGLPEFRNAVAKFMGKVRGNRITFD-PDRIV 123 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~ 123 (483)
++++|+.+++..+++ .+.++.... .. ..|+ +..|.+++|+++++++...++.++.++ +++|+
T Consensus 104 ~~i~l~~g~~~~~~~~~v~a~~~~~--------------~~-~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~ 168 (533)
T 3f6t_A 104 DAVNYCHTELGLNRDKVVAEWVNGA--------------VA-NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF 168 (533)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHH--------------HT-CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE
T ss_pred hheeccCCCCCcCCcHHHHHHHHHH--------------Hh-CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE
Confidence 467888888776643 334333321 11 2454 677999999999999965523102233 47999
Q ss_pred EeCChhHHHHHHHHH-----hcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC--CCCcccCHHHHHHHHHHHHhc
Q 011570 124 MSGGATGAHETVAFC-----LADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS--SNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 124 it~G~~~al~~~~~~-----l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~--~~~~~~d~~~l~~~i~~~~~~ 196 (483)
+|+|+++++..++.+ ++++||+|+++.|+|..+...+... |.+++.++++. +.+|.+|++.|++++.
T Consensus 169 ~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~d~~~l~~~l~----- 242 (533)
T 3f6t_A 169 PTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELK-DYELVEVDLHSYEKNDWEIEPNEIEKLKD----- 242 (533)
T ss_dssp EEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGG-GSEEEEECCCEETTTTSEECHHHHHHHSC-----
T ss_pred EECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHc-CCeEEEEEecCCcccCCCCCHHHHHHHhC-----
Confidence 999999999999998 7899999999999999998888875 99999998864 5678999999999875
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHh-hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN-EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~-~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
+++++|++++||||||.+++.+++++|+++|+ ++|++||+||+|.++.++. .++.... .+++++++|
T Consensus 243 -~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~----~~~~~~~-------~~~~i~~~S 310 (533)
T 3f6t_A 243 -PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNF----KSIYSVV-------PYNTMLVYS 310 (533)
T ss_dssp -TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTC----CCHHHHS-------GGGEEEEEE
T ss_pred -CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCc----cCHhhcC-------CCCEEEEec
Confidence 37999999999999999999999999999999 6899999999999865532 3454442 378999999
Q ss_pred CccccCCCCceEEEEEecChHHHHHH------------------------------------HHhh--hcCCCChHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYSYNDQVVSCA------------------------------------RKMS--SFGLVSSQTQHL 317 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~~~l~~~~------------------------------------~~~~--~~~~~s~~~q~~ 317 (483)
|||.+|++|+|+||++++++.+.+.+ .... .....+++.|.+
T Consensus 311 ~SK~~g~~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a 390 (533)
T 3f6t_A 311 YSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM 390 (533)
T ss_dssp SHHHHTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHH
T ss_pred CcccCCCcccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHH
Confidence 99999999999999999765322221 1111 123467788877
Q ss_pred ----HHHhcC-C---hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhcc-C--h-------
Q 011570 318 ----IATMLS-D---DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQ-T--Y------- 379 (483)
Q Consensus 318 ----~~~~l~-~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~-~--~------- 379 (483)
+...+. + +.+ .+++++.++.++++++.+.+.|. .++.+..+.+|+|+|++++...... . +
T Consensus 391 ~a~~a~~~L~~~~g~~~~-~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~ 468 (533)
T 3f6t_A 391 EALFSMTHLLTSTNGGSD-DPYIDIARKLVSERYDQLHDAMQ-APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNN 468 (533)
T ss_dssp HHHHHHHHHTTCBGGGTB-CHHHHHHHHHHHHHHHHHHHHHT-CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccch-HHHHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEehHhhhhhccchHHHHHhhcc
Confidence 334453 1 122 45678889999999999999998 8888888999999999997532100 0 0
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
....+++..+++++||.+.||+.|+. .++++||+++..+++++++++++|++++++..++
T Consensus 469 ~~~~~~~~~ll~~~GV~v~pg~~f~~-~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~ 528 (533)
T 3f6t_A 469 FEQVDFLLKLAEKNGVVLVDGVGFGA-KPGELRVSQANLPTEDYALIGKQVLELLKEYYEE 528 (533)
T ss_dssp CCHHHHHHHHHHHTTSSSCTTEEECS-STTEEEEESSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCCcccCC-CCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 02346778888889999999999986 4679999998679999999999999999887643
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=349.10 Aligned_cols=327 Identities=17% Similarity=0.234 Sum_probs=259.7
Q ss_pred ccccC-CCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHH--HHHHHhcC--C---------CCeEEEeCC
Q 011570 86 GIAIF-QDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHE--TVAFCLAD--P---------GDAFLVPTP 151 (483)
Q Consensus 86 ~~~~Y-~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~--~~~~~l~~--~---------gd~Vlv~~P 151 (483)
....| ++..|.++||+++|++++ +++++|++|+|+++++. .++.+++. | ||+|+++.|
T Consensus 61 ~~~~Yp~~~~g~~~lr~~ia~~~~--------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p 132 (423)
T 3ez1_A 61 DLRNYPGGVAGLPSARALFAGYLD--------VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP 132 (423)
T ss_dssp ETTSSCSCTTCCHHHHHHHHHHTT--------SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEES
T ss_pred hhhCCCCCCCChHHHHHHHHHHhC--------CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCC
Confidence 34689 888899999999999985 67899999999999998 88888887 8 599999999
Q ss_pred CCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHH-h
Q 011570 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFI-N 229 (483)
Q Consensus 152 ~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a-~ 229 (483)
+|..+...++.. |.+++.+|++++ .+|++.|++++++ .+++++|+++ +||||||.+++.+++++|+++| +
T Consensus 133 ~y~~~~~~~~~~-g~~~~~v~~~~~---g~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~ 204 (423)
T 3ez1_A 133 GYDRHFLLLQTL-GFELLTVDMQSD---GPDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAA 204 (423)
T ss_dssp CCHHHHHHHHHH-TCEEEEEEEETT---EECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCS
T ss_pred CcHHHHHHHHHc-CCEEEeccCCCC---CCCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHh
Confidence 999999998886 999999998764 3999999999852 2478888654 8999999999999999999999 9
Q ss_pred hcCcEEEEccccccCccCC-C-CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-
Q 011570 230 EKNIHLVCDEIYAATVFTK-E-SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS- 306 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~-~-~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~- 306 (483)
++|++||+||+|..+.|.. . ..+.++.++.... ...+++++++||||. +++|+|+||+++ ++.+.+.+.....
T Consensus 205 ~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~~~~~~~~~~~~ 280 (423)
T 3ez1_A 205 APDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA--GYPDRAFVFASTSKI-TFAGAGLGFVAS-SEDNIRWLSKYLGA 280 (423)
T ss_dssp STTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHH--TCTTSEEEEEESTTT-SCSSSSCEEEEE-CHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCcchhhcCCCCCCCCcchhhhhhcc--CCCCeEEEEeCchhh-ccCCcceEEEEe-CHHHHHHHHHHHhh
Confidence 9999999999998655543 1 2334555542100 035789999999999 579999999999 5566666555443
Q ss_pred -cCCCChHHHHHHHHhcCC-hhHHHHHHHHHHHHHHHHHHHHHHhhhc----CC--ceeecCCceEEEeeecCchhhccC
Q 011570 307 -FGLVSSQTQHLIATMLSD-DQFVEKFIAESAKRIAERHKAFTWGLSQ----VG--IGCLKSNAGLFLWMDLHHLLKEQT 378 (483)
Q Consensus 307 -~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g--i~~~~~~~g~f~~~~l~~~~~~~~ 378 (483)
.+.++++.|.++..++.+ .+.+.+++++.++.++++++.+.+.|.+ .| +.+..|.+|+|+|++++.. +
T Consensus 281 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~-~--- 356 (423)
T 3ez1_A 281 QSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP-V--- 356 (423)
T ss_dssp SCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS-C---
T ss_pred hccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC-c---
Confidence 245788999999888876 2334667778888888888777766654 55 7778889999999999853 1
Q ss_pred hHHHHHHHHHHHHhcCeEeeC-CCCCCC---CCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 379 YEAEMALWRVIINEVKLNVSP-GSSFHC---PNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~p-g~~f~~---~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
...+.. +++++||.++| |..|+. ..++++||+++..+++++++++++|++++++...+
T Consensus 357 ---~~~~~~-~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~~ 418 (423)
T 3ez1_A 357 ---ADRVVK-LAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACIRLATEE 418 (423)
T ss_dssp ---HHHHHH-HHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHH-HHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224444 45577999999 766753 24679999998569999999999999999887654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=346.49 Aligned_cols=315 Identities=21% Similarity=0.320 Sum_probs=265.4
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
...|++..|.++||+++|+++. .+++++|++|+|+++++..++.+++++||+|+++.|+|..+...+... |.
T Consensus 56 ~~~y~~~~g~~~l~~~la~~~~-------~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 127 (375)
T 3op7_A 56 KLNYGWIEGSPAFKKSVSQLYT-------GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSL-GA 127 (375)
T ss_dssp CCSSCCTTCCHHHHHHHHTTSS-------SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHT-TC
T ss_pred CcCCCCCCChHHHHHHHHHHhc-------cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHc-CC
Confidence 3578888999999999999874 157899999999999999999999999999999999999999888876 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++++.+++|.+|++.|++++++ ++++|++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+
T Consensus 128 ~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~ 201 (375)
T 3op7_A 128 EVDLWQIEEENGWLPDLEKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE 201 (375)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS
T ss_pred EEEEEeccccCCCCCCHHHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 99999998777889999999998853 789999999999999999999999999999999999999999998654
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSD 324 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~ 324 (483)
. ...++.+. .+++++++||||.+|++|+|+||+++ ++.+.+.+...... ...+++.+.++..++..
T Consensus 202 ~---~~~~~~~~--------~~~~i~~~s~sK~~~~~G~r~G~v~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (375)
T 3op7_A 202 L---DVPSIIEV--------YDKGIAVNSLSKTYSLPGIRIGWVAA-NHQVTDILRDYRDYTMICAGVFDDLVAQLALAH 269 (375)
T ss_dssp S---CCCCHHHH--------CTTEEEEEESSSSSSCGGGCCEEEEC-CHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT
T ss_pred c---CCCchhhh--------cCCEEEEeEChhhcCCcccceEEEEe-CHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc
Confidence 4 22344333 36789999999999999999999999 67777776554443 34577888887777764
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 325 DQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
.++++++.++.++++++.+.+.|++. ++.+..+.+++++|+.++...+ ..+++..+++++||.+.||..|
T Consensus 270 ---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gi~v~~g~~~ 340 (375)
T 3op7_A 270 ---YQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMP------MEDFCLQLLQEHGVLLVPGNRF 340 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSC------HHHHHHHHHHHHCEECEEGGGG
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCC------HHHHHHHHHHhCCEEEeChhhh
Confidence 24567788888899999999999886 7888888898899988875322 3377888887889999999988
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 404 HCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 404 ~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+. ++++||+++. +++++++++++|++++++..+
T Consensus 341 ~~--~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~~ 373 (375)
T 3op7_A 341 ER--DGYVRLGFAC-EQETLIKGLEKLSQFLRRFDK 373 (375)
T ss_dssp TC--TTEEEECCCS-CHHHHHHHHHHHHHHHGGGC-
T ss_pred CC--CCeEEEEecC-CHHHHHHHHHHHHHHHHHHhh
Confidence 74 6899999984 668999999999999976643
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=352.12 Aligned_cols=344 Identities=15% Similarity=0.197 Sum_probs=266.0
Q ss_pred CCcccccchhh-hhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 46 NGVIQMGLAEN-LLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
.++|+|+.+.+ ... ++.+.+.+.+.. ......|++..|.++||+++++++....+ .++++++|.
T Consensus 41 ~~~i~l~~g~~~d~~~~~~v~~a~~~a~------------~~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~~~~i~ 106 (409)
T 4eu1_A 41 KRKVNLSIGVYRDDADQPFVLECVKQAT------------LGTNMDYAPVTGIASFVEEAQKLCFGPTC--AALRDGRIA 106 (409)
T ss_dssp SSCEECCCSSCCCTTSCCCCCHHHHTCC------------CCSCCCCCCTTCCHHHHHHHHHHHHCSSC--HHHHTTCEE
T ss_pred cCceeeeeeEEECCCCCEeecHHHHhcC------------ccccccCCCCCCcHHHHHHHHHHHcCCCc--hhhccCcee
Confidence 46799999985 432 333444444321 12346798889999999999999853211 112378884
Q ss_pred --EeCChhHHHHHHH---HHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCC
Q 011570 124 --MSGGATGAHETVA---FCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNI 198 (483)
Q Consensus 124 --it~G~~~al~~~~---~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 198 (483)
.|.|+++++..+. .+++++||.|++++|+|..+...++.. |.+++.++++++++|.+|++.|++++++. ..
T Consensus 107 ~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~ 182 (409)
T 4eu1_A 107 SCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKA-GMELTPYSYYDPATKGLNLAGMLECLDKA---PE 182 (409)
T ss_dssp EEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHT-TCEEEEECCEETTTTEECHHHHHHHHHHS---CT
T ss_pred eeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHc-CCeEEEEEeecCcCCcCcHHHHHHHHHhC---CC
Confidence 5999999988754 456789999999999999999999886 99999999865567899999999998742 12
Q ss_pred ceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC--CcchHHHhhhhccccCCCeEEEEecC
Q 011570 199 RIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES--SFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 199 ~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~--~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
+++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+.+ . ...++..+.. ..+++++++||
T Consensus 183 ~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~~-----~~~~~i~~~S~ 256 (409)
T 4eu1_A 183 GSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQ-LDYDAFVPRHLVD-----MVPNLIVAQSF 256 (409)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC-HHHHTHHHHHHHT-----TSSCCEEEEEC
T ss_pred CcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCC-cccchHHHHHHHh-----hCCcEEEEecC
Confidence 45667779999999999999999999999999999999999999876653 1 1234444433 35788999999
Q ss_pred ccccCCCCceEEEE--EecChH----HHHHHHHhh--hcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHHHHH
Q 011570 277 SKDMGFPGFRVGII--YSYNDQ----VVSCARKMS--SFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAERHKA 345 (483)
Q Consensus 277 SK~~g~~GlRiG~l--i~~~~~----l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~ 345 (483)
||+||++|+|+||+ ++.++. +.+.+.... ....+++++|.+++.++.+.... .+++++.++.+++++++
T Consensus 257 SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (409)
T 4eu1_A 257 SKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKR 336 (409)
T ss_dssp TTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 665665 544444432 23456789999999999875422 34467788999999999
Q ss_pred HHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHH
Q 011570 346 FTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR 421 (483)
Q Consensus 346 l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e 421 (483)
+.+.|++.| +++..+++|+|+|++++. +++..+++++||.+.|| .||+++..+++
T Consensus 337 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ll~~~gv~v~p~----------~Ri~~~~~~~~ 395 (409)
T 4eu1_A 337 LVSELKACGSVHDWSHIERQVGMMAYTGLTR-----------EQVELLRSEYHIYMTLN----------GRAAVSGLNST 395 (409)
T ss_dssp HHHHHHHTTCCSCCHHHHHSCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCTT
T ss_pred HHHHHHhcCCCCCcceecCCceEEEEeCCCH-----------HHHHHHHHcCCEEEcCC----------CEEEEEecCHh
Confidence 999999987 788889999999977652 45777888889999985 38999877888
Q ss_pred HHHHHHHHHHHHH
Q 011570 422 TMEIALSRITSFM 434 (483)
Q Consensus 422 ~l~~~l~~L~~~l 434 (483)
++++++++|++++
T Consensus 396 ~i~~~~~~l~~~l 408 (409)
T 4eu1_A 396 NVEYVSQAIHNVT 408 (409)
T ss_dssp THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 8999999998875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-46 Score=375.28 Aligned_cols=353 Identities=19% Similarity=0.254 Sum_probs=282.4
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++|+.+++.++ ++.+.+++.+... .....|++. ..++|+++++++.+.+| +++++++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~------------~~~~~y~~~--~~~l~~~la~~l~~~~g--~~~~~~~v~~ 94 (392)
T 3b1d_A 31 PQLLPAWIADMDFEVMPEVKQAIHDYAE------------QLVYGYTYA--SDELLQAVLDWEKSEHQ--YSFDKEDIVF 94 (392)
Confidence 47899999988765 3444454433111 123567764 78999999999987766 4567899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++++||+|+++.|+|+.+...+... |.+++.++++ ++++|.+|++.|++++++ .++++|
T Consensus 95 ~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v 168 (392)
T 3b1d_A 95 VEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLN-NRKLVSNSLKEENGLFQIDFEQLENDIVE-----NDVKLY 168 (392)
Confidence 999999999999999999999999999999999888875 9999999985 334588999999998863 267899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..+.++..+... ..+++++++||||.+|++
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~----~~~~~i~~~s~sK~~~~~ 243 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG-HEHVSFNTVSPD----FKDFALVLSSATKTFNIA 243 (392)
Confidence 999999999999999999999999999999999999999987765 444555544320 147889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc---CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc-C-Cceee
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF---GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ-V-GIGCL 358 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-gi~~~ 358 (483)
|+|+||++++++.+.+.+...... ..+++++|.++.+++... .+++++.++.++++++.+.+.|++ + |+.+.
T Consensus 244 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 320 (392)
T 3b1d_A 244 GTKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG---KPWLVALKAVLEENIQFAVEYFAQEAPRLKVM 320 (392)
Confidence 999999999655566655544332 246778888888888752 345777888899999999999987 4 88888
Q ss_pred cCCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
++.+++++|++++.. .+ ..++++.|++++||.+.||..|+...++++||+++. +++++++++++|+++++
T Consensus 321 ~~~~~~~~~i~~~~~~~~------~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 321 KPQGTYLIWLDFSDYGLT------DDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 999999999998742 11 236777777677999999999975567799999984 78899999999998775
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=352.97 Aligned_cols=356 Identities=18% Similarity=0.287 Sum_probs=263.5
Q ss_pred CCcccccchhhhhcH---HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 46 NGVIQMGLAENLLCH---ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.++|+|+.+.+...+ +.+.+++.+.... . ........|++..|.++||+++|+++.+.+| +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i 101 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVES------G-KAADALCNYDGPQGKTALLNALAVLLRETLG--WDIEPQNI 101 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHH------T-HHHHHHHSTTCTTSHHHHHHHHHHHHHHHHC--CCCCGGGE
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhC------C-cccceeeccCCCCCcHHHHHHHHHHHHHHhC--CCCCcccE
Confidence 478999999877643 3344443321000 0 0001234799999999999999999988877 55789999
Q ss_pred EEeCChhHHHHHHHHHhcCCCC-----eEEEe-CCCCcChHHHHhhh-----cCcEEEEeecCCCCCcccCHHHHHHHHH
Q 011570 123 VMSGGATGAHETVAFCLADPGD-----AFLVP-TPYYPGFDRDLRWR-----TGVQLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd-----~Vlv~-~P~y~~~~~~~~~~-----~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
++|+|+++++++++.+++++|| +|+++ .|+|+.+...+... .+..+..++.+. .+|.+|++.|+ +.
T Consensus 102 ~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~ 178 (417)
T 3g7q_A 102 ALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IG 178 (417)
T ss_dssp EEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CC
T ss_pred EEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cc
Confidence 9999999999999999999987 89997 99999887664321 134555554321 24678998887 32
Q ss_pred HHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEE
Q 011570 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi 271 (483)
+++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+ +.. ..+.+.... ..++++
T Consensus 179 ------~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~-~~~-~~~~~~~~~-------~~~~~i 243 (417)
T 3g7q_A 179 ------EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVP-FPG-IIFSEARPL-------WNPNII 243 (417)
T ss_dssp ------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTC-CBCSCCCCC-------CCTTEE
T ss_pred ------cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccc-ccc-ccccccccC-------CCCCEE
Confidence 37899999999999999999999999999999999999999999753 221 111111100 247899
Q ss_pred EEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHH-HHHHHHHHHHHHHH
Q 011570 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAE-SAKRIAERHKAFTW 348 (483)
Q Consensus 272 ~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~ 348 (483)
+++|||| ++++|+|+||+++ ++.+.+.+...... ..+++++|.++..++.+..+. ++..+ .++.++++++.+.+
T Consensus 244 ~~~s~sK-~~~~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (417)
T 3g7q_A 244 LCMSLSK-LGLPGSRCGIIIA-NDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLL-RLSETVIKPFYYQRVQQTIA 320 (417)
T ss_dssp EEEESGG-GTCTTSCCEEEEC-CHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHH-HHHHHTHHHHHHHHHHHHHH
T ss_pred EEEechh-ccCCCcceEEEEe-CHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999 6889999999999 56666666554332 346889999999999887653 33343 67778888888888
Q ss_pred hhhcC----CceeecCCceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC-------CCEEEEEec
Q 011570 349 GLSQV----GIGCLKSNAGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN-------PGWFRVCFA 416 (483)
Q Consensus 349 ~L~~~----gi~~~~~~~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~-------~~~iRis~~ 416 (483)
.|.+. |+.+..+.+|+|+|++++. ..+ ..+++..|. ++||.++||+.|+... ++++||+++
T Consensus 321 ~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~ 393 (417)
T 3g7q_A 321 IIRRYLSEERCLIHKPEGAIFLWLWFKDLPIT------TELLYQRLK-ARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV 393 (417)
T ss_dssp HHHHHCCTTTCEEECCCBSSEEEEECTTCSSC------HHHHHHHHH-HTTEECEEGGGGCTTBSSCCGGGGGEEEEESC
T ss_pred HHHHhcccCCceeeCCCcceEEEEEcCCCCCC------HHHHHHHHH-HCCEEEECchhhCCCCccccccCCCeEEEEec
Confidence 77653 6888889999999999985 222 236677764 6799999999886543 569999998
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhh
Q 011570 417 NMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 417 ~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
. +++++++++++|++++++..+
T Consensus 394 ~-~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 394 P-EPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp S-CHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHHHHh
Confidence 5 999999999999999987654
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=362.10 Aligned_cols=356 Identities=14% Similarity=0.175 Sum_probs=273.7
Q ss_pred cCCCCCCCccchhhhhhh------cC-----CCCCCCCCCCcccccchhhhhcH-HHHHHHHhcCCCCcccccccccccc
Q 011570 18 GNGHGEDSPYFDGWKAFE------SD-----PYHPTKNPNGVIQMGLAENLLCH-ELVEDWLMNNPKASICSAEGLNEFK 85 (483)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~i~l~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (483)
..|||. +||.+| .+. .+ +|++..++.++|+|+.++|++++ +.+.+++.+... ..+ .
T Consensus 20 ~~~~g~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~l~-----~~~----~ 87 (427)
T 2hox_A 20 CSEHGR--AFLDGI-ISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVL-----VSP----W 87 (427)
T ss_dssp CGGGEE--CCTTSC-EETTEECCEECTTEESTTSCEECTTCCEECCSCCCGGGHHHHTTSHHHHCEE-----ECT----T
T ss_pred cCcCCc--eeeccc-cccCCcccccccccCCCCCcccCCCceEEecCcCCCCCCCHHHHHhHHhhhh-----cCC----c
Confidence 456777 788887 444 34 78888889999999999998764 334444432110 000 1
Q ss_pred ccccCCCCC-C---cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh--------cCCCCeEEEeCCCC
Q 011570 86 GIAIFQDYH-G---LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL--------ADPGDAFLVPTPYY 153 (483)
Q Consensus 86 ~~~~Y~~~~-g---~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l--------~~~gd~Vlv~~P~y 153 (483)
....|++.. | .++||++||+|++...+ ..+++++|++|+|+++++.+++.+| ++|||.|+++.|+|
T Consensus 88 ~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~--~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y 165 (427)
T 2hox_A 88 HRMSYFFNPVSNFISFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFY 165 (427)
T ss_dssp TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCC
T ss_pred ccccCCCCCCCccchHHHHHHHHHHHHHhCC--cCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCc
Confidence 123498888 8 99999999999997544 4468899999999999999999999 99999999999999
Q ss_pred cChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCc
Q 011570 154 PGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 154 ~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~ 233 (483)
+.|...++.. |.+++. |.+|++.|++++.+ ++++|+++|||||||.+++ +.+ + ++
T Consensus 166 ~~~~~~~~~~-g~~~~~--------~~~d~~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~~l-------~--~~ 220 (427)
T 2hox_A 166 PVFREQTKYF-DKKGYV--------WAGNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-AVI-------K--GC 220 (427)
T ss_dssp HHHHHHHHHS-CBTTEE--------EEEEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-CSS-------T--TC
T ss_pred ccHHHHHHHc-CCeeee--------ecCCHHHHHHhhcC------CceEEEEcCCCCCcccccH-HHH-------c--CC
Confidence 9999998886 888764 34677778776643 6899999999999999999 422 2 45
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCC
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVS 311 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s 311 (483)
.+|.|++|. .. . .++..+ ..+++|+++||||.+|++|+|+||++++++.+.+.+...... ..++
T Consensus 221 ~~i~d~~~~----~~-~--~s~~~~-------~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~ 286 (427)
T 2hox_A 221 KSIYDMVYY----WP-H--YTPIKY-------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTP 286 (427)
T ss_dssp EEEEECTTC----ST-T--TSCCCS-------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCC
T ss_pred CEEEeeccc----CC-C--CCcccc-------CCCceEEEEeChhcCCCCCceEEEEEECCHHHHHHHHHHHHhcCCCCC
Confidence 677777763 22 1 232222 137899999999999999999999999657777776665543 5688
Q ss_pred hHHHHHHHHhcCCh-hHH-------HHHHHHHHHHHHHHHHHHHHhhhcC-Ccee--------------ecCCceEEEee
Q 011570 312 SQTQHLIATMLSDD-QFV-------EKFIAESAKRIAERHKAFTWGLSQV-GIGC--------------LKSNAGLFLWM 368 (483)
Q Consensus 312 ~~~q~~~~~~l~~~-~~~-------~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~--------------~~~~~g~f~~~ 368 (483)
+++|.++..+|.+. +++ ++++++.++.++++++++.+.|++. |+.+ ..|++|+|+|+
T Consensus 287 ~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~ 366 (427)
T 2hox_A 287 RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWV 366 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEE
T ss_pred HHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEE
Confidence 99999998888753 222 3567788899999999999999987 6654 35667999999
Q ss_pred ecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 369 ~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+++. +. .+++..+++++||.|+||+.|+. +++++|||++. +++++++++++|++++++
T Consensus 367 ~~~~--~~------~~~~~~ll~~~gI~v~pg~~f~~-~~~~~Ris~~~-~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 367 KCEW--EE------DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLIK-TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp EECS--GG------GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECSS-CHHHHHHHHHHHHHHHTC
T ss_pred ECCC--cH------HHHHHHHHHHCCEEEcCCCccCC-CCCEEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 9975 11 25677788788999999999976 67899999984 889999999999998754
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=336.52 Aligned_cols=333 Identities=18% Similarity=0.289 Sum_probs=266.0
Q ss_pred CCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 44 NPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
++.++|||+.++|+++ ++.+.+++.+. +.....|+. .+..++|+++|++++ +++++|
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~l~~~la~~~~--------~~~~~i 81 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEG-------------IKNLGVYPD-VNYRRLNKSIENYLK--------LKDIGI 81 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHH-------------HHGGGSCCC-TTCHHHHHHHHHHHT--------CCSCEE
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHH-------------HHHhcCCCC-ccHHHHHHHHHHHhC--------CCcceE
Confidence 4567899999999885 44454444331 112356754 578999999999986 578999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.++ |+|+++.|+|..+...++.. |.+++.+++++++ .+++++++++++ . +++
T Consensus 82 ~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~l~~~l~------~-~~~ 147 (361)
T 3ftb_A 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKH-GVSVVFSYLDENM--CIDYEDIISKID------D-VDS 147 (361)
T ss_dssp EEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHHHHHT-TCEEEEEECCTTS--CCCHHHHHHHTT------T-CSE
T ss_pred EEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHHHHHc-CCeEEEeecCccc--CCCHHHHHHhcc------C-CCE
Confidence 99999999999999887 89999999999999988886 9999999988654 356688888774 2 789
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. . .+...... ..+++++++|+||.+|+
T Consensus 148 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~~-----~~~~~i~~~s~sK~~~~ 219 (361)
T 3ftb_A 148 VIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP-S--SSFVGEIK-----NYSCLFIIRAMTKFFAM 219 (361)
T ss_dssp EEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT-T--SSSGGGTT-----TCSSEEEEEESSSTTSC
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc-c--cchhHhcc-----cCCCEEEEeeChhhcCC
Confidence 9999999999999999999999999999999999999999876541 1 23333322 35788999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecC
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKS 360 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~ 360 (483)
+|+|+||++..++.+.+.+......+.+++++|.++.+++.+.+ ++++.+++++++++++.+.|+++ ++. +.++
T Consensus 220 ~G~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 295 (361)
T 3ftb_A 220 PGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDTN----YIEESLLWIKKERKRFIEELNKIGFIKRVFSP 295 (361)
T ss_dssp GGGCCEEEEESCHHHHHHHHTTSCTTCSCHHHHHHHHHTSSCHH----HHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC
T ss_pred CCcceeEEEeCCHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCCCceecCC
Confidence 99999999954777777776665566789999999999998743 46777888899999999999988 788 6666
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.+ .|+|++++. .+ ..++.+.|.++ ||.++||..|+..+++++||+++ ++++++++++.|+++.+
T Consensus 296 ~~-~~~~~~~~~-~~------~~~l~~~l~~~-gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 296 HA-NFVLCRLEN-IS------GEKLYDSLLKE-DIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp SS-SEEEEEESS-SC------HHHHHHHHHTT-TEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred CC-eEEEEEcCC-CC------HHHHHHHHHHC-CeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 65 578898875 11 23677777755 99999999998666789999998 77778888888877654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=334.92 Aligned_cols=323 Identities=16% Similarity=0.260 Sum_probs=252.2
Q ss_pred CCCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 42 TKNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 42 ~~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
..++.++|+|+.|+|+++ ++.+.+++.+. ......|++ .|..+||+++|++++ ++++
T Consensus 12 ~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~-------------~~~~~~y~~-~~~~~lr~~la~~~~--------~~~~ 69 (337)
T 3p1t_A 12 VRAAAQAVCLAFNENPEAVEPRVQAAIAAA-------------AARINRYPF-DAEPRVMRKLAEHFS--------CPED 69 (337)
T ss_dssp --CCCCCEECSSCCCCSCCCHHHHHHHHHH-------------GGGTTSCCT-THHHHHHHHHHHHHT--------SCGG
T ss_pred ccCCCCceEeeCCCCCCCCCHHHHHHHHHh-------------hhhhccCCC-CchHHHHHHHHHHhC--------cCHH
Confidence 345667899999999986 45666666542 123467864 688999999999986 5788
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++..++.++ +||+|+++.|+|..+...++.. |++++.+++++ +|.+|++.++++ .++
T Consensus 70 ~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~--------~~~ 136 (337)
T 3p1t_A 70 NLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVS-GLRHFEIGLTD--DLLLDPNDLAQV--------SRD 136 (337)
T ss_dssp GEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHHHHTTS-CCEEEEECBCT--TSSBCHHHHTTC--------CTT
T ss_pred HEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHHHHHHc-CCEEEEecCCC--CCCCCHHHHHhh--------cCC
Confidence 9999999999999999988 9999999999999999988876 99999999875 578999998765 257
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++|++++||||||.+++.+++.+|+ ++++. +|+||+|.++.+.. .. . . . ..+++++++||||.+
T Consensus 137 ~~v~i~~p~nptG~~~~~~~l~~l~---~~~~~-~ivDea~~~~~~~~-~~--~---~-~-----~~~~~i~~~S~sK~~ 200 (337)
T 3p1t_A 137 DCVVLANPSNPTGQALSAGELDQLR---QRAGK-LLIDETYVDYSSFR-AR--G---L-A-----YGENELVFRSFSKSY 200 (337)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHH---HHCSE-EEEECTTGGGSSCS-SS--C---C-C-----CBTTEEEEEESSSTT
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHH---HhCCc-EEEECCChhhcccc-cc--c---c-c-----cCCCEEEEeeCchhc
Confidence 8999999999999999977766665 46676 56699998754332 11 1 0 1 236789999999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
|++|+|+||+++ ++.+.+.+......+.++.++|.++..++.+.++ ..+.++++.++++++.+.|+++|+++.++
T Consensus 201 g~~G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~g~~~~~~ 275 (337)
T 3p1t_A 201 GLAGLRLGALFG-PSELIAAMKRKQWFCNVGTLDLHALEAALDNDRA----REAHIAKTLAQRRRVADALRGLGYRVASS 275 (337)
T ss_dssp CCTTTCCEEEEC-CHHHHHHHHTTSCTTCSCHHHHHHHHHHHTCHHH----HHHHHHHHHHHHHHHHHHHHHTTCCBCCC
T ss_pred cCcchheEEEEe-CHHHHHHHHhhcCCCCCCHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHHHHHHHHCcCEECCC
Confidence 999999999999 5666666665555566888999999999987554 33444556677888999999889988887
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
.++ |+|+..+.. .++.. +++++||.++||..|+. ++++||+++ +++++++++++|+++.+
T Consensus 276 ~~~-~~~~~~~~~---------~~~~~-~l~~~gi~v~~g~~~~~--~~~iRis~~--~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 276 EAN-FVLVENAAG---------ERTLR-FLRERGIQVKDAGQFGL--HHHIRISIG--REEDNDRLLAALAEYSD 335 (337)
T ss_dssp SSS-EEEEECTTT---------HHHHH-HHHHTTEECEEGGGGTC--CSEEEEECC--CHHHHHHHHHHHHHHTC
T ss_pred CCe-EEEEEcCCH---------HHHHH-HHHHCCeEEEECccCCC--CCeEEEecC--CHHHHHHHHHHHHHHhh
Confidence 776 677776531 13344 45567999999998864 679999998 78999999999987653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=347.26 Aligned_cols=349 Identities=18% Similarity=0.188 Sum_probs=271.5
Q ss_pred CCcccccchhh------hhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAEN------LLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|+|+.+.+ +.+++.+.+++.+... .......|++..|..+||+++++++...++ +.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~----------~~~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 97 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIAN----------NSSLNHEYLPILGLAEFRTCASRLALGDDS--PALQE 97 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHT----------CTTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhh----------ChhhccCCCCCCCCHHHHHHHHHHHhcCCC--CccCC
Confidence 46789999873 2234556666544210 001345788888999999999999965444 33578
Q ss_pred CcEEE--eCChhHHHHHHHH--HhcCCC-----CeEEEeCCCCcChHHHHhhhcCcE-EEEeecCCCCCcccCHHHHHHH
Q 011570 120 DRIVM--SGGATGAHETVAF--CLADPG-----DAFLVPTPYYPGFDRDLRWRTGVQ-LVPVVCDSSNDFKVTMEALEAA 189 (483)
Q Consensus 120 ~~i~i--t~G~~~al~~~~~--~l~~~g-----d~Vlv~~P~y~~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~ 189 (483)
++|++ |+|+++++..++. .++++| |+|+++.|+|+.+...+... |.+ ++.++++++++|.+|++.++++
T Consensus 98 ~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~ 176 (412)
T 1ajs_A 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSD 176 (412)
T ss_dssp TCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHc-CCceeEEEeeecCCCCccCHHHHHHH
Confidence 99999 9999999999964 456899 99999999999999988876 999 9999985445788999999999
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCC
Q 011570 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRN 268 (483)
Q Consensus 190 i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~ 268 (483)
+.+. +.++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..+.++..+.. ..+
T Consensus 177 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-----~~~ 248 (412)
T 1ajs_A 177 LENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-----EGF 248 (412)
T ss_dssp HHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-----TTC
T ss_pred HHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhc-----cCC
Confidence 8752 23577888999999999999999999999999999999999999998655420 02235554433 357
Q ss_pred eEEEEecCccccCCCCceEEEEEe---cChH---HHHHHHH-hh-hcCCCChHHHHHHHHhcCChhHH---HHHHHHHHH
Q 011570 269 LIHIVYSLSKDMGFPGFRVGIIYS---YNDQ---VVSCARK-MS-SFGLVSSQTQHLIATMLSDDQFV---EKFIAESAK 337 (483)
Q Consensus 269 ~vi~~~S~SK~~g~~GlRiG~li~---~~~~---l~~~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~ 337 (483)
+++++.||||.+|++|+|+||+++ +++. +.+.+.. .. .+..+++++|.++.++|.+..+. .+++++.++
T Consensus 249 ~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 328 (412)
T 1ajs_A 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHH
Confidence 899999999999988999999998 4332 3333333 22 23335889999999999876421 346788889
Q ss_pred HHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEE
Q 011570 338 RIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRV 413 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRi 413 (483)
+++++++++.+.|++++ +++..+.+|+|+|++++. +++..+++++||.+.|+ +||
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ri 387 (412)
T 1ajs_A 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPS----------GRI 387 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTT----------SEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCH-----------HHHHHHHHhCCEEecCC----------cEE
Confidence 99999999999999886 787888999999987651 45666777889999874 599
Q ss_pred EeccCCHHHHHHHHHHHHHHHHH
Q 011570 414 CFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 414 s~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+++..+++++++++++|++++++
T Consensus 388 s~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 388 NMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EeeeCCHHHHHHHHHHHHHHHHh
Confidence 99856899999999999998865
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=350.43 Aligned_cols=366 Identities=18% Similarity=0.268 Sum_probs=272.7
Q ss_pred CCcc-cccchhhhhcHHH---HHHHHhcCCCCccccccc---cccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC
Q 011570 46 NGVI-QMGLAENLLCHEL---VEDWLMNNPKASICSAEG---LNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118 (483)
Q Consensus 46 ~~~i-~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~ 118 (483)
.++| +|+.+.+..+++. +.+++.+.... ..++ .........|++..|.++||+++|+|+.+.+| +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g--~~~~ 105 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGND---NDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYD--WNLT 105 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSC---SCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHC--CCCC
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhc---cccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcC--CCCC
Confidence 4679 9999987765433 33333321000 0000 00001235799999999999999999998887 5578
Q ss_pred CCcEEEeCChhHHHHHHHHHhcCCCC--------------eEEEe-CCCCcChHHH------HhhhcCcEEEEeecCCC-
Q 011570 119 PDRIVMSGGATGAHETVAFCLADPGD--------------AFLVP-TPYYPGFDRD------LRWRTGVQLVPVVCDSS- 176 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~~gd--------------~Vlv~-~P~y~~~~~~------~~~~~G~~~~~v~~~~~- 176 (483)
+++|++|+|+++++.+++.+++++|| .|+++ .|+|..+... +.. .|..+++++++++
T Consensus 106 ~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (444)
T 3if2_A 106 SENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAA-VLPHIDEVTHDGEE 184 (444)
T ss_dssp GGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEE-CCCEEEEEEETTEE
T ss_pred HHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhc-cCceEEeccccccc
Confidence 99999999999999999999999998 78776 9999988763 233 3888888888752
Q ss_pred C--CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 177 N--DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 177 ~--~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+ +|.+|++.|++++... .+++++|++++||||||.+++.+++++|+++|++||++||+||+|+.. +.. ..+.+
T Consensus 185 g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~-~~~~~ 259 (444)
T 3if2_A 185 GFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPN-IIYSD 259 (444)
T ss_dssp EEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTC-CBCSC
T ss_pred CccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccc-ccccc
Confidence 2 4789999999885421 247899999999999999999999999999999999999999999753 221 11111
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFI 332 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (483)
... . ..+++++++||||. +++|+|+||+++ ++.+.+.+..... .+.++++.|.++..++....+. ++.
T Consensus 260 ~~~--~-----~~~~~i~~~S~sK~-~~~G~r~G~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~-~~~ 329 (444)
T 3if2_A 260 AHL--N-----WDNNTILCFSLSKI-GLPGMRTGIIVA-DAKVIEAVSAMNAVVNLAPTRFGAAIATPLVANDRIK-QLS 329 (444)
T ss_dssp CCC--C-----CCTTEEEEEESTTT-TCGGGCCEEEEC-CHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSHHH-HHH
T ss_pred ccc--c-----CCCCEEEEechhhc-cCCCCceEEEEE-CHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcCchh-HHH
Confidence 100 0 24789999999997 789999999998 5666666554332 2457889999999999887653 333
Q ss_pred HH-HHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 333 AE-SAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 333 ~~-~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
.+ .++.++++++.+.+.|.+ .++.+..+.+|+|+|++++. ..+ ..+++..|. ++||.++||+.|...
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~l~~~l~-~~gi~v~~g~~~~~~ 402 (444)
T 3if2_A 330 DNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPIS------TLDLYERLK-AKGTLIVPSEYFFPG 402 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSC------HHHHHHHHH-HTTEECEEGGGSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCC------HHHHHHHHH-HCCeEEecchhhcCC
Confidence 43 677788888888777765 26778888999999999975 222 236677664 679999999988643
Q ss_pred C--------CCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 407 N--------PGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 407 ~--------~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
. .+++||+++. +++++++++++|++++++..++
T Consensus 403 ~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~~ 443 (444)
T 3if2_A 403 VDVSDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYDN 443 (444)
T ss_dssp CCCTTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHcc
Confidence 1 2689999996 9999999999999999877543
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-42 Score=346.28 Aligned_cols=345 Identities=17% Similarity=0.192 Sum_probs=263.9
Q ss_pred CCcccccchh---hh---hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAE---NL---LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~---n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|||+.+. +. .+++.+.+++.+... . .....|++..|..+||+++++++....+ .++++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~~~g~~~lr~~la~~~~~~~~--~~~~~ 92 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLE----------N-ETTKNYLGIDGIPEFGRCTQELLFGKGS--ALIND 92 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH----------H-CCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHT
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcC----------c-ccccCCCCCCCCHHHHHHHHHHHhcCCC--Ccccc
Confidence 4678999997 21 233555555543100 0 1245788888999999999999964322 22468
Q ss_pred CcEEE--eCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 120 DRIVM--SGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 120 ~~i~i--t~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
++|++ |+|+++++..++.++ +.+||+|+++.|+|+.+...++.. |.+++.++++++++|.+|++.+++++.+.
T Consensus 93 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 169 (396)
T 2q7w_A 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEA-- 169 (396)
T ss_dssp TCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred ccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHc-CCceEEEecccCCCCCcCHHHHHHHHHhC--
Confidence 89998 999999999998766 469999999999999999988886 99999999864446889999999988631
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
.++++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++...+.++..+.. ..+++++++|
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s 243 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAA-----MHKELIVASS 243 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHH-----HCSCEEEEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHh-----cCCcEEEEEe
Confidence 1246788889999999999999999999999999999999999999876542012234544433 2478999999
Q ss_pred CccccCCCCceEEEEEe--cCh----HHHHHHHHh--hhcCCCChHHHHHHHHhcCChh---HHHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYS--YND----QVVSCARKM--SSFGLVSSQTQHLIATMLSDDQ---FVEKFIAESAKRIAERHK 344 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~--~~~----~l~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~ 344 (483)
|||.+|++|+|+||+++ +++ .+.+.+... ..+..+++++|.++.+++++.. .+.+++++.++.++++++
T Consensus 244 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 323 (396)
T 2q7w_A 244 YSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQ 323 (396)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHH
T ss_pred ccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997 333 344433332 2334458899999999998752 124567788889999999
Q ss_pred HHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCH
Q 011570 345 AFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420 (483)
Q Consensus 345 ~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~ 420 (483)
++.+.|++.| +++.++.+|+|+|++++. +++..+++++||.+.|| +||+++..++
T Consensus 324 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gv~v~~~----------~Ris~~~~~~ 382 (396)
T 2q7w_A 324 LFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVAS----------GRVNVAGMTP 382 (396)
T ss_dssp HHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCcceecCCCceEEEecCCH-----------HHHHHHHHhcCeeecCC----------ceEEEeecCH
Confidence 9999999886 788888999999987752 34556676789999874 6999986689
Q ss_pred HHHHHHHHHHHHH
Q 011570 421 RTMEIALSRITSF 433 (483)
Q Consensus 421 e~l~~~l~~L~~~ 433 (483)
+++++++++|+++
T Consensus 383 e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 383 DNMAPLCEAIVAV 395 (396)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999875
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=344.06 Aligned_cols=348 Identities=17% Similarity=0.179 Sum_probs=265.3
Q ss_pred CCcccccchhh------hhcHHHHHHHHhc-CCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC
Q 011570 46 NGVIQMGLAEN------LLCHELVEDWLMN-NPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118 (483)
Q Consensus 46 ~~~i~l~~~~n------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~ 118 (483)
.++|+|+.+.. ..+++.+.+++.+ .... .....|++..|.++||+++++++...+| +.++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-----------~~~~~y~~~~g~~~lr~~ia~~~~~~~~--~~~~ 95 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-----------SYNHEYLGITGLPSLTSNAAKIIFGTQS--DALQ 95 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-----------TCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHH
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-----------ccccCCCCCCCcHHHHHHHHHHHhcCCC--CCCC
Confidence 46789998763 1234555555543 2111 1245788888999999999999975544 4457
Q ss_pred CCcEEE--eCChhHHHHHHH--HHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 119 PDRIVM--SGGATGAHETVA--FCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 119 ~~~i~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
+++|++ |+|+++++.+++ ..++.+||+|+++.|+|..+...++.. |++++.+++.++.++.+|++.|++++++.
T Consensus 96 ~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~l~~~- 173 (412)
T 1yaa_A 96 EDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKA- 173 (412)
T ss_dssp TTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHHHS-
T ss_pred cceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHc-CceEEEEeeecCCCCccCHHHHHHHHHhC-
Confidence 899999 999999999884 444579999999999999999988876 99999999832236789999999998752
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC-CCcchHHHhhhhccccCCC---eE
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRN---LI 270 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~---~v 270 (483)
..++.++++++||||||.+++.+++++|+++|+++|++||+||+|.++.+++. ..+.++..+.. ..+ ++
T Consensus 174 --~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 246 (412)
T 1yaa_A 174 --PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVE-----KLSTVSPV 246 (412)
T ss_dssp --CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHH-----HTTTTCCE
T ss_pred --CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHh-----cCCCCcce
Confidence 11244555599999999999999999999999999999999999988765520 02234444432 124 89
Q ss_pred EEEecCccccCCCCceEEEEE--e----cChH----HHHHHHH-hh-hcCCCChHHHHHHHHhcCChhH---HHHHHHHH
Q 011570 271 HIVYSLSKDMGFPGFRVGIIY--S----YNDQ----VVSCARK-MS-SFGLVSSQTQHLIATMLSDDQF---VEKFIAES 335 (483)
Q Consensus 271 i~~~S~SK~~g~~GlRiG~li--~----~~~~----l~~~~~~-~~-~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~ 335 (483)
++++||||.+|++|+|+||++ + .++. +.+.+.. .. .+..+++++|.++.+++.+..+ ..+++++.
T Consensus 247 i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T 1yaa_A 247 FVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999997899999998 6 1344 5555544 22 2344578999999999987642 14567888
Q ss_pred HHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEE
Q 011570 336 AKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWF 411 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~i 411 (483)
+++++++++++.+.|++++ +++..+.+|+|+|+.++. +....+++++||.+.+ ++
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~----------~~ 385 (412)
T 1yaa_A 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVA----------SG 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCT----------TS
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCH-----------HHHHHHHHhCCEEecc----------Cc
Confidence 8999999999999998876 888889999999986642 2236677778999986 37
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 412 RVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 412 Ris~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
||+++..+++++++++++|+++++.
T Consensus 386 Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 386 RASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCHhHHHHHHHHHHHHHHh
Confidence 9999866899999999999998763
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=334.49 Aligned_cols=326 Identities=18% Similarity=0.283 Sum_probs=258.5
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|||+.++|+++ ++.+.+++.+.. .....|++..+ .+||+++|++++ +++++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~-------------~~~~~y~~~~~-~~lr~~la~~~~--------~~~~~i~~ 72 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENL-------------NCIRHYPEPDA-GTLRQMLAKRNS--------VDNNAILV 72 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTG-------------GGGGSCCCTTC-HHHHHHHHHHTT--------CCGGGEEE
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhH-------------hHHhcCCCCcH-HHHHHHHHHHhC--------cCHHHEEE
Confidence 57899999998886 455556554421 23467888776 999999999986 57899999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec-CCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC-DSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++.+++.++. ||+|+++.|+|..+...++.. |++++.+++ ++.+++. + +++++|
T Consensus 73 t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~~~~~~-g~~~~~v~~~~~~~~~~--~--------------~~~~~v 133 (350)
T 3fkd_A 73 TNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYEDACRMY-EHEVCFYPSNEDIGEAD--F--------------SNMDFC 133 (350)
T ss_dssp ESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHHHHHHT-TCEEEEEETTSCGGGSC--C--------------TTCSEE
T ss_pred cCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHHHHHHc-CCeEEEEecCCccccCc--c--------------CCCCEE
Confidence 9999999999999987 999999999999999988886 999999998 6544333 2 178999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++.+|++.|.++ +||+||+|.++.+.+ .. .. ... . ..+++++++||||.+|++
T Consensus 134 ~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~-~~-~~-~~~-~-----~~~~~i~~~S~sK~~~~~ 202 (350)
T 3fkd_A 134 WLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEE-VI-RP-ADI-K-----GRKNLVMVYSFSHAYGIP 202 (350)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSC-CC-CG-GGG-T-----TCSSEEEEEESHHHHSCG
T ss_pred EEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCc-ch-hh-HHh-h-----cCCCEEEEecCchhccCc
Confidence 9999999999999999999999988765 999999999876554 22 11 212 2 357899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~ 362 (483)
|+|+||+++ ++.+.+.+......+.+++++|.++..++.+.+. +.++.++.. ++++++.+.|+++ |+.+.++.+
T Consensus 203 G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~ 277 (350)
T 3fkd_A 203 GLRIGYIVA-NKDFMKRVAAFSTPWAVNALAIEAAKFILIHPAQ---FTLPIRKWQ-RNTVDFITALNRLDGVEVHPSGT 277 (350)
T ss_dssp GGCCEEEEC-CHHHHHHHHTTCCTTCSCHHHHHHHHHHHHCTTT---TCCCHHHHH-HHHHHHHHHHHHSTTEEECCCSS
T ss_pred chheEeEEe-CHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCHHH---HHHHHHHHH-HHHHHHHHHHhcCCCcEECCCCC
Confidence 999999999 6777777766666667899999999888876541 122333333 7778899999888 888876655
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.|+|++++.. +..++++.|++++||.++||+.|+...++++||+++ +++++++++++|++++++++
T Consensus 278 -~~~~~~~~~~-------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 343 (350)
T 3fkd_A 278 -TFFLLRLKKG-------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYE 343 (350)
T ss_dssp -SEEEEEESSS-------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC--
T ss_pred -cEEEEECCCC-------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhc
Confidence 5788888753 134778888875799999999998766889999998 78889999999988776653
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.37 Aligned_cols=333 Identities=17% Similarity=0.209 Sum_probs=249.3
Q ss_pred CCCCcccccchhhhhcHH-HHHHHHhcCCCCccccccccccccccccCCCCCCc-----HHHHHHHHHHHHhhhCCCCCc
Q 011570 44 NPNGVIQMGLAENLLCHE-LVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGL-----PEFRNAVAKFMGKVRGNRITF 117 (483)
Q Consensus 44 ~~~~~i~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~-----~~Lr~~ia~~~~~~~g~~~~~ 117 (483)
+..++|+|+.+++.++.+ .+.+++.... ..........|++..|. ++||++||+|++ .+| +.+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g--~~~ 88 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTV--------TIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVG--NAA 88 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCE--------EECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHC--SBC
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHh--------hcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcC--CCC
Confidence 456789999998876532 2333221100 00001134679999998 999999999998 455 556
Q ss_pred CC-CcEEEeCChhHHHHHHHHHhcCCCC----eEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 118 DP-DRIVMSGGATGAHETVAFCLADPGD----AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 118 ~~-~~i~it~G~~~al~~~~~~l~~~gd----~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
++ ++|++|+|+++++..++.+++++|| +|++++|+|+.|...++.. |++++.++++.++ ++
T Consensus 89 ~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~d~~~---l~---------- 154 (391)
T 3bwn_A 89 TEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYV-RSGMYKWEGDAWG---FD---------- 154 (391)
T ss_dssp CSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTT-CBTTEEEEEESTT---CC----------
T ss_pred CCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHc-CCeEEEecCCHHH---cC----------
Confidence 67 5999999999999999999999999 9999999999999998876 9999988876532 22
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
.+++++|+++|||||||.+++ +|++.+..++++||+||+|.+ . . +.++.. ..+++|+
T Consensus 155 ----~~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~-~~~l~~--------~~~~~i~ 211 (391)
T 3bwn_A 155 ----KKGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-H-YTPITR--------RQDHDIM 211 (391)
T ss_dssp ----CCSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS----T-T-TSCCCC--------CBCCSEE
T ss_pred ----CCCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-C-CCcccc--------CCCCeEE
Confidence 026899999999999999997 344422223499999999963 2 1 112111 2378999
Q ss_pred EecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChh-H------HHHHHHHHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQ-F------VEKFIAESAKRIAERH 343 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~-~------~~~~~~~~~~~l~~~~ 343 (483)
++||||.||++|+|+||+++.++.+.+.+..... .+++++++|.++..++.+.. + .++++++.++.+++++
T Consensus 212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
T 3bwn_A 212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRW 291 (391)
T ss_dssp EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHH
T ss_pred EEechhhcCCCccceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999855666666655443 36689999999998887542 1 1456788899999999
Q ss_pred HHHHHhhhcC-CceeecC-------------CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 344 KAFTWGLSQV-GIGCLKS-------------NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 344 ~~l~~~L~~~-gi~~~~~-------------~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
+++.+.|+++ |+++..+ .+|+|+|++++.. +++..+++++||.++||+.|+. .++
T Consensus 292 ~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~----------~~~~~~l~~~gV~v~pg~~fg~-~~~ 360 (391)
T 3bwn_A 292 EKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE----------TDLVSELRRHKVMSRAGERCGS-DKK 360 (391)
T ss_dssp HHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS----------CCHHHHHHHTTEECEEGGGGTC-CTT
T ss_pred HHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcH----------HHHHHHHHHCCEEEccCCCCCC-CCC
Confidence 9999999987 6666543 4556999999741 2244556678999999999975 568
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 410 WFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
++|||++. +++++++++++|++++++
T Consensus 361 ~iRis~~~-~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 361 HVRVSMLS-REDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESCS-CHHHHHHHHHHHHSCC--
T ss_pred EEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence 99999984 889999999999987654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.55 Aligned_cols=316 Identities=16% Similarity=0.206 Sum_probs=253.7
Q ss_pred cccCCCCCCcHHHHHHHHHHHHhhhCCCCC---cCCCcEEE--eCChhHHHHH--HHHHhcCCCCeEEEeCCCCcChHHH
Q 011570 87 IAIFQDYHGLPEFRNAVAKFMGKVRGNRIT---FDPDRIVM--SGGATGAHET--VAFCLADPGDAFLVPTPYYPGFDRD 159 (483)
Q Consensus 87 ~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~---~~~~~i~i--t~G~~~al~~--~~~~l~~~gd~Vlv~~P~y~~~~~~ 159 (483)
...|++..|.+++|+++++++. | .. +++++|++ |+|+++++.+ .+.+++.+||+|++++|+|..+...
T Consensus 87 ~~~Y~~~~G~~~lr~~ia~~l~---g--~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~ 161 (448)
T 3meb_A 87 NKEYPPVAGFPLFLEAAQFLMF---G--KDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGI 161 (448)
T ss_dssp CCSCCCTTCCHHHHHHHHHHHH---C--TTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHhc---C--CCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHH
Confidence 4579888999999999999983 2 11 23789999 9999999988 5566788999999999999999998
Q ss_pred Hh----hhcCcEEEEeecCCCC-CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcE
Q 011570 160 LR----WRTGVQLVPVVCDSSN-DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 160 ~~----~~~G~~~~~v~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~ 234 (483)
++ .. |.+++.+++.+++ +|.+|++.+++++++. ..+++++++++||||||.+++.+++++|+++|+++|++
T Consensus 162 ~~~~~~~~-G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~ 237 (448)
T 3meb_A 162 YDKVFNKL-KVPYKEYTYLRKDGELEIDFSNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHI 237 (448)
T ss_dssp HHHHHCTT-TSCCEEECCBCTTSCSSBCHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCE
T ss_pred HHhhHHhC-CCeEEEEeccccccCCCcCHHHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCE
Confidence 88 75 9999999984444 6899999999999752 12567889999999999999999999999999999999
Q ss_pred EEEccccccCccCCC-CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEE--Ee--------cCh----HHHH
Q 011570 235 LVCDEIYAATVFTKE-SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGII--YS--------YND----QVVS 299 (483)
Q Consensus 235 iI~Deay~~~~~~~~-~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~l--i~--------~~~----~l~~ 299 (483)
+|+||+|.++.+++. ....++..+.. ..+++++++||||.||++|+|+||+ ++ +++ .+..
T Consensus 238 li~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~ 312 (448)
T 3meb_A 238 AFFDSAYQGFATGSFEADAFAVRMFVD-----AGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVS 312 (448)
T ss_dssp EEEEESCTTTSSSCHHHHTHHHHHHHH-----TTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHH
T ss_pred EEEecccccccCCCcccCchhHHHHhh-----cCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHH
Confidence 999999998765530 01233444433 3578999999999999999999998 66 444 4444
Q ss_pred HHHHhh--hcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHHHHHHHHhhhcC---C------ceeecCCceEE
Q 011570 300 CARKMS--SFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAERHKAFTWGLSQV---G------IGCLKSNAGLF 365 (483)
Q Consensus 300 ~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~l~~~L~~~---g------i~~~~~~~g~f 365 (483)
.+.... .+..++.++|.+++.++.+..+. .+++++.+++++++++++.+.|+++ + +.+..+++|+|
T Consensus 313 ~l~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 392 (448)
T 3meb_A 313 GMTLQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMF 392 (448)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSE
T ss_pred HHHHHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEE
Confidence 444322 23456789999999999886532 2447788899999999999999887 3 55667899999
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+|+.++. +++..+++++||.+.||+ .|||++..+++++++++++|++++++
T Consensus 393 ~~~~~~~-----------~~~~~ll~~~gV~v~~G~---------gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 393 TFTGLTP-----------EHVDYLKEKWSIYLVKAG---------GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp EECCCCH-----------HHHHHHHHHHCEEECSGG---------GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EecCCCH-----------HHHHHHHHhCCEEEeCCC---------cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9988752 567778888899999985 29999866778899999999999874
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.07 Aligned_cols=333 Identities=15% Similarity=0.224 Sum_probs=260.6
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
.|||+.++|+++ ++.+.+++.+.... . ......|++..+ .++|+++|+++.+.+| +++++++|++|+
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~~y~~~~~-~~l~~~la~~l~~~~g--~~~~~~~v~~~~ 99 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDK------I---ATELNRYPERDA-VELRDELAAYITKQTG--VAVTRDNLWAAN 99 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHH------H---GGGTTSCCCTTC-HHHHHHHHHHHHHHHC--CCCCGGGEEEES
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHh------c---ccccccCCCccH-HHHHHHHHHhhhhccc--CCCChHhEEECC
Confidence 389999998765 44455544431000 0 012457877666 7999999999988776 446789999999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT 206 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~ 206 (483)
|+++++..++.+++++||+|+++.|+|+.+...++.. |.+++.+|.++ +|.+|++.+++++++. ++++|+++
T Consensus 100 G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~ 171 (369)
T 3cq5_A 100 GSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGT-HTEFIAVSRGA--DFRIDMDVALEEIRAK-----QPDIVFVT 171 (369)
T ss_dssp HHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHT-TCEEEEEECCT--TSSCCHHHHHHHHHHH-----CCSEEEEE
T ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHc-CCEEEEecCCc--CCCCCHHHHHHHhhcc-----CCCEEEEe
Confidence 9999999999999999999999999999999888876 99999999753 5789999999998752 67899999
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCC-eEEEEecCccccCCCCc
Q 011570 207 NPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN-LIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 207 ~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~-~vi~~~S~SK~~g~~Gl 285 (483)
+||||||.+++.+++.+|++.| +++||+||+|.++.+. .+...+.+ ..+ ++++++|+||.+|++|+
T Consensus 172 ~~~nptG~~~~~~~l~~l~~~~---~~~li~De~~~~~~~~-----~~~~~~~~-----~~~~~~i~~~s~sK~~~~~G~ 238 (369)
T 3cq5_A 172 TPNNPTGDVTSLDDVERIINVA---PGIVIVDEAYAEFSPS-----PSATTLLE-----KYPTKLVVSRTMSKAFDFAGG 238 (369)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHC---SSEEEEECTTGGGCCS-----CCGGGGTT-----TCTTTEEEEEESSSTTSCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHhC---CCEEEEECCchhhcCC-----cchHHHHh-----hCCCCEEEEEechHhcCCccc
Confidence 9999999999987777777754 5999999999875432 22223322 235 88999999999999999
Q ss_pred eEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE
Q 011570 286 RVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF 365 (483)
Q Consensus 286 RiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f 365 (483)
|+||++++ +.+.+.+......+.+++++|.++.+++...+ ++++.+++++++++++.+.|.+.|+++.++. |+|
T Consensus 239 r~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~-~~~ 312 (369)
T 3cq5_A 239 RLGYFVAN-PAFIDAVMLVRLPYHLSALSQAAAIVALRHSA----DTLGTVEKLSVERVRVAARLEELGYAVVPSE-SNF 312 (369)
T ss_dssp CCEEEEEC-THHHHHHHTTSCTTCSCHHHHHHHHHHHHTHH----HHHTHHHHHHHHHHHHHHHHHHHTCEEECCS-SSE
T ss_pred ceEEEEeC-HHHHHHHHHcCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHhCCCEECCCC-CeE
Confidence 99999995 55666665544445688999999888887643 4667778888999999999988888887554 568
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+|++++. + ..++.+.|. ++||.+.|| + .++++||+++ +++++++++++|+++++
T Consensus 313 ~~~~~~~--~------~~~l~~~l~-~~gi~v~~~---~--~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 313 VFFGDFS--D------QHAAWQAFL-DRGVLIRDV---G--IAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp EEEECCS--S------HHHHHHHHH-HTTEECBCC---S--CTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred EEEECCC--C------HHHHHHHHH-HCCEEEEEC---C--CCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 8998861 1 236677765 679999998 1 2579999998 78999999999998764
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=335.02 Aligned_cols=347 Identities=14% Similarity=0.113 Sum_probs=254.0
Q ss_pred cccccchh------hhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc
Q 011570 48 VIQMGLAE------NLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR 121 (483)
Q Consensus 48 ~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~ 121 (483)
.|||+++. ++..++.++++....... .....|.+..|.++||+++++++.... .+.....
T Consensus 46 kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-----------~~~~~Y~p~~G~p~lr~aia~~~~g~~---~~~~~~~ 111 (420)
T 4h51_A 46 KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-----------NLDYEYLPISGYQPFIDEAVKIIYGNT---VELENLV 111 (420)
T ss_dssp CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-----------TCCCCCCCTTCCHHHHHHHHHHHHC------CGGGEE
T ss_pred CEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-----------CCCCCCCCcCChHHHHHHHHHHhcCCC---ccccccc
Confidence 58999982 222346676654431110 123469999999999999999974321 1112223
Q ss_pred EEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcChHHHHhhhcCcE-EEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 122 IVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGFDRDLRWRTGVQ-LVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 122 i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~-~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
.+-|.|++.++...+.. +.+|||+|++++|+|+.|...++.. |.+ +..++..+.+++.+|.+.+.+.+...
T Consensus 112 ~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a-G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~--- 187 (420)
T 4h51_A 112 AVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA-GWKNICTYAYYDPKTVSLNFEGMKKDILAA--- 187 (420)
T ss_dssp EEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT-TCCCEEEEECEEGGGTEECHHHHHHHHHHS---
T ss_pred eeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc-CCeEEEeeccccccccCCCHHHHHHHHhcc---
Confidence 45588888887766654 4579999999999999999999986 886 44555555567889999998888653
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc--hHHHhhhhccccCCCeEEEEe
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV--SIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~--s~~~l~~~~~~~~~~~vi~~~ 274 (483)
.++++++++++||||||.+++.+++++|+++|+++++++|+||+|.++.|++ .... .+..... ..++++++.
T Consensus 188 ~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~-~~~~~~~~~~~~~-----~~~~~i~~~ 261 (420)
T 4h51_A 188 PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGS-LDTDAYAARLFAR-----RGIEVLLAQ 261 (420)
T ss_dssp CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSC-HHHHTHHHHHHHH-----TTCCCEEEE
T ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCC-cccchHHHHhHHh-----hCceEEEEe
Confidence 3467788888999999999999999999999999999999999999987764 2211 1222222 457899999
Q ss_pred cCccccCCCCceEEEEEecChHHHHH------HHH--hhhcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSC------ARK--MSSFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAERH 343 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~ 343 (483)
||||.|+++|+|+||++++.+..... +.. ...+.+.+...|.+++.++.+.... ++.++.++++++++|
T Consensus 262 s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R 341 (420)
T 4h51_A 262 SFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMR 341 (420)
T ss_dssp ECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865433221 111 1233556778889999999886533 445677889999999
Q ss_pred HHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCC
Q 011570 344 KAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMD 419 (483)
Q Consensus 344 ~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~ 419 (483)
+.+.+.|++.| |.++.+++|||.|+.++. +.++ +|+++||.+.|+. |||+++.+
T Consensus 342 ~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~-----------e~v~-~L~e~~Vy~~~~g----------Ris~Agl~ 399 (420)
T 4h51_A 342 RTVYDELLRLQTPGSWEHVINQIGMFSFLGLSK-----------AQCE-YCQNHNIFITVSG----------RANMAGLT 399 (420)
T ss_dssp HHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCH-----------HHHH-HHHHTTEECCTTC----------EEEGGGCC
T ss_pred HHHHHHHHHhCCCCCCCeecCCCceEEecCcCH-----------HHHH-HHHhCCEEEcCCC----------EEEeccCC
Confidence 99999999885 455678889999987753 2233 4567899988752 99998889
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 011570 420 DRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 420 ~e~l~~~l~~L~~~l~~~~~~ 440 (483)
++.++.+.++|.+++++..+|
T Consensus 400 ~~ni~~~a~aI~~vvr~i~re 420 (420)
T 4h51_A 400 HETALMLAQTINDAVRNVNRE 420 (420)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999876553
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=325.58 Aligned_cols=330 Identities=18% Similarity=0.274 Sum_probs=256.3
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.++|+++ ++.+.+++.+.... . ......|++. +..+||+++|++++ +++++|+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----~----~~~~~~y~~~-~~~~lr~~la~~~g--------~~~~~i~ 86 (360)
T 3hdo_A 25 IASWIKLNTNENPYPPSPEVVKAILEELGP-----D----GAALRIYPSA-SSQKLREVAGELYG--------FDPSWII 86 (360)
T ss_dssp CTTSEECSSCCCSSCCCHHHHHHHHHHHTT-----T----CGGGGSCCCS-SCHHHHHHHHHHHT--------CCGGGEE
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHHhc-----c----cchhhcCCCC-chHHHHHHHHHHhC--------cCcceEE
Confidence 357899999999886 45566655441110 0 0114568765 56999999999986 5789999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||+|+++.|+|..+...++.. |.+++.++++++ +.+ +++++. .+++++
T Consensus 87 ~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~-g~~~~~v~~~~~--~~~--~~l~~~--------~~~~~v 153 (360)
T 3hdo_A 87 MANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQ-GARVRTFGLTGD--FRI--AGFPER--------YEGKVF 153 (360)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHH-TCEEEEECBCTT--SSB--TTCCSS--------BCSSEE
T ss_pred EcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHC-CCEEEEeeCCCC--CCH--HHHHhh--------cCCCEE
Confidence 9999999999999999999999999999999999988886 999999998653 444 444322 246799
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++|+||||.+++.+++.+ +|+++|+++|+||+|.++ .+ ....+.. . ..+++++++|+||.+|++
T Consensus 154 ~i~~p~nptG~~~~~~~l~~---l~~~~~~~li~De~~~~~--~~-~~~~~~~---~-----~~~~~i~~~s~sK~~g~~ 219 (360)
T 3hdo_A 154 FLTTPNAPLGPSFPLEYIDE---LARRCAGMLVLDETYAEF--AE-SNALELV---R-----RHENVVVTRTLSKSYSLA 219 (360)
T ss_dssp EEESSCTTTCCCCCHHHHHH---HHHHBSSEEEEECTTGGG--SS-CCCTHHH---H-----HCSSEEEEEESTTTTSCT
T ss_pred EEeCCCCCCCCCcCHHHHHH---HHHHCCCEEEEECChHhh--CC-cchhHHh---c-----cCCCEEEEecchHhhcCC
Confidence 99999999999999665554 556889999999999874 44 3223322 2 247889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g 363 (483)
|+|+||+++ ++.+.+.+......+.+++++|.++.+++.+.+ ++++.+++++++++++.+.|+++|+.+.++.+
T Consensus 220 G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~- 293 (360)
T 3hdo_A 220 GMRIGLAIA-RPEVIAALDKIRDHYNLDRLAQAACVAALRDQA----YLSECCRRIRETREWFTTELRSIGYDVIPSQG- 293 (360)
T ss_dssp TSCCEEEEC-CHHHHHHHHHHSCSCCSCHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHHHHHTTCEECCCSS-
T ss_pred ccceeeEee-CHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHHHHHHHHHCCCEEcCCCc-
Confidence 999999999 677777776666566789999999999988744 36777888899999999999988988876655
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|+|++++.. + ..++.+.|. ++||.+++|..+ ..++++||+++ +++++++++++|+++.+..
T Consensus 294 ~~~~~~~~~~-~------~~~l~~~l~-~~gi~v~~~~~~--~~~~~iRis~~--~~~e~~~l~~al~~~~~~~ 355 (360)
T 3hdo_A 294 NYLFATPPDR-D------GKRVYDGLY-ARKVLVRHFSDP--LLAHGMRISIG--TREEMEQTLAALKEIGEGH 355 (360)
T ss_dssp SEEEEECTTC-C------HHHHHHHHH-HTTEECBCCCST--TTTTSEEEECC--CHHHHHHHHHHHHHHHC--
T ss_pred cEEEEECCCC-C------HHHHHHHHH-HCCEEEEECCCC--CCCCEEEEEcC--CHHHHHHHHHHHHHHhccc
Confidence 5888887631 1 236666665 569999998752 34679999998 8999999999999876543
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-41 Score=337.93 Aligned_cols=342 Identities=16% Similarity=0.176 Sum_probs=261.5
Q ss_pred CCcccccchhh--h----hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAEN--L----LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
.++|||+.++. + .+++.+.+++.+... . .....|++..|..+||+++|+++.. ..+++
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~----------~-~~~~~y~~~~g~~~lr~~la~~~~~-----~~~~~ 89 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE----------T-ETTKTYAGLSGEPEFQKAMGELILG-----DGLKS 89 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH----------H-CCCCCCCCSSCCHHHHHHHHHHHHG-----GGCCG
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcC----------C-cccCCCCCCCCcHHHHHHHHHHHhC-----CCCCc
Confidence 45789999872 1 234556665543100 0 1345798888999999999999842 12368
Q ss_pred CcEEE--eCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 120 DRIVM--SGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 120 ~~i~i--t~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
++|++ |+|+++++..++.++.. +||+|+++.|+|+.+...++.. |.+++.++++.++++.+|++.+++++++.
T Consensus 90 ~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-- 166 (394)
T 2ay1_A 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA-- 166 (394)
T ss_dssp GGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC--
T ss_pred ccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHc-CCceEEEecccccCCccCHHHHHHHHHhC--
Confidence 89999 99999999999987754 9999999999999999988886 99999999864456789999999998641
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
..+++++++++||||||.+++.+++++|+++|+++|+++|+||+|.++.+++.....++..+.. ..+++++++|
T Consensus 167 -~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~s 240 (394)
T 2ay1_A 167 -KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIAS-----RIPEVLIAAS 240 (394)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHH-----HCSSEEEEEE
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhh-----cCCCEEEEEe
Confidence 1236677889999999999999999999999999999999999999865542001234443432 2467899999
Q ss_pred CccccCCCCceEEEEEe--cChHHH----HHHHHh--hhcCCCChHHHHHHHHhcCChh---HHHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYS--YNDQVV----SCARKM--SSFGLVSSQTQHLIATMLSDDQ---FVEKFIAESAKRIAERHK 344 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~--~~~~l~----~~~~~~--~~~~~~s~~~q~~~~~~l~~~~---~~~~~~~~~~~~l~~~~~ 344 (483)
|||.+|++|+|+||+++ +++.+. ..+... ..+..+++++|.++.+++.+.. .+.+++++.+++++++++
T Consensus 241 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 320 (394)
T 2ay1_A 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 444332 222211 2234458899999988887752 224567888899999999
Q ss_pred HHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCH
Q 011570 345 AFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDD 420 (483)
Q Consensus 345 ~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~ 420 (483)
++.+.|++++ +++..+.+|+|+|++++. +....+++++||.+.|| +||+++..++
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~~l~~~gi~v~~~----------~Ris~~~~~~ 379 (394)
T 2ay1_A 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGD----------SRINIAGLND 379 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGCCT
T ss_pred HHHHHHHhcCCCCCeeEEcCCceEEEeeCCCH-----------HHHHHHHHhCCEEecCC----------CeEEeecCCH
Confidence 9999998764 777788889999998752 23455666789999874 6999986689
Q ss_pred HHHHHHHHHHHHH
Q 011570 421 RTMEIALSRITSF 433 (483)
Q Consensus 421 e~l~~~l~~L~~~ 433 (483)
+++++++++|+++
T Consensus 380 ~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 380 NTIPILARAIIEV 392 (394)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc
Confidence 9999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=321.75 Aligned_cols=316 Identities=17% Similarity=0.263 Sum_probs=248.0
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.++++++ ++.+.+++.+.... .....|++. +..++|+++|+++++. .+++++|+
T Consensus 18 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-----------~~~~~y~~~-~~~~lr~~la~~~~~~-----~~~~~~v~ 80 (335)
T 1uu1_A 18 KRDKTYLALNENPFPFPEDLVDEVFRRLNS-----------DALRIYYDS-PDEELIEKILSYLDTD-----FLSKNNVS 80 (335)
T ss_dssp CCCSEEESSCCCSSCCCHHHHHHHHHTCCG-----------GGGGSCCCS-SCHHHHHHHHHHHTCS-----SCCGGGEE
T ss_pred CCcceECCCCCCCCCCCHHHHHHHHHHhhh-----------hhhhcCCCC-chHHHHHHHHHHcCCC-----CCCHHHEE
Confidence 357899999998764 55566666543210 124568664 6899999999999743 25688999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.++ ||+|+++ |+|+.+...++.. |.+++.+|+++ +|.+|++++ + ++++|
T Consensus 81 ~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l-----~------~~~~v 142 (335)
T 1uu1_A 81 VGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIFAKAV-GAKFLEVPLTK--DLRIPEVNV-----G------EGDVV 142 (335)
T ss_dssp EESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHHHHHH-TCEEEECCCCT--TSCCCCCCC-----C------TTEEE
T ss_pred EcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHHHHHc-CCeEEEeccCC--CCCCCHHHc-----C------CCCEE
Confidence 9999999999999988 8999999 9999999888876 99999999864 467888776 1 67899
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++||||||.+++.+++.+|++.| | ++|+||+|.++. . .++.+ +.. ..+++++++||||.+|++
T Consensus 143 ~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~--~-~~~~~---~~~-----~~~~~i~~~s~sK~~g~~ 207 (335)
T 1uu1_A 143 FIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFH--G-ESYVD---FLK-----KYENLAVIRTFSKAFSLA 207 (335)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHH--C-CCCGG---GGG-----TCSSEEEEEESTTTTTCG
T ss_pred EEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhc--c-hhHHH---Hhh-----hCCCEEEEecchhhcCCc
Confidence 9999999999999999999998877 7 899999998743 2 22122 222 347889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG 363 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g 363 (483)
|+|+||+++ ++.+.+.+......+.+++++|.++.+++...+ ++++.+++++++++++.+.|.+.|+.+.++ ++
T Consensus 208 G~r~G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~ 281 (335)
T 1uu1_A 208 AQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITDS-RG 281 (335)
T ss_dssp GGCCEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCCBCCC-CS
T ss_pred ccCeEEEEe-CHHHHHHHHHhcCCCCcCHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHCCcEEcCC-CC
Confidence 999999999 666776666655556789999999999987643 356677788899999999998878876544 56
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|++++. . +..+++..|++ +||.++|+ ++++||+++ +++++++++++|+++
T Consensus 282 ~~~~~~~~~-~------~~~~~~~~l~~-~gi~v~~~-------~~~iRis~~--~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 282 NFVFVFMEK-E------EKERLLEHLRT-KNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (335)
T ss_dssp SEEEEECCT-H------HHHHHHHHHHH-HTEEEEEE-------TTEEEEECC--CHHHHHHHHHHHHCC
T ss_pred eEEEEECCC-C------CHHHHHHHHHH-CCEEEEEC-------CCeEEEEeC--CHHHHHHHHHHHHhh
Confidence 789999874 1 13367777775 59999982 468999997 567899999998754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=304.20 Aligned_cols=342 Identities=13% Similarity=0.086 Sum_probs=257.1
Q ss_pred CCCcccccchhh-hh-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 45 PNGVIQMGLAEN-LL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
+.++|||+.+++ .+ +++.+.+++.+.... . ......|+...|..++++++++++.+.+| .+++
T Consensus 42 g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~------~---~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~~v 106 (398)
T 3a2b_A 42 GRRVLMFGSNSYLGLTTDTRIIKAAQDALEK------Y---GTGCAGSRFLNGTLDIHVELEEKLSAYVG------KEAA 106 (398)
T ss_dssp TEEEEECSCSCTTCGGGCHHHHHHHHHHHHH------H---CSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CSEE
T ss_pred CceEEEeecccccCCCCCHHHHHHHHHHHHH------c---CCCCCCcCcccCCcHHHHHHHHHHHHHhC------CCcE
Confidence 456789999977 44 344455544331000 0 01123466677888999999999988766 3699
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
++|+|+++++..++.+++++||.|+++.|+|+.+...++.. |.+++.++. +|++.|++++++... .++++
T Consensus 107 ~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~-g~~~~~v~~-------~d~~~l~~~l~~~~~--~~~~~ 176 (398)
T 3a2b_A 107 ILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLS-FSKVIKYGH-------NNMEDLRAKLSRLPE--DSAKL 176 (398)
T ss_dssp EEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHS-SSEEEEECT-------TCHHHHHHHHHTSCS--SSCEE
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHc-CCceEEeCC-------CCHHHHHHHHHhhcc--CCceE
Confidence 99999999999999999999999999999999999988875 999999885 478999998864210 16889
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe-EEEEecCccccC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL-IHIVYSLSKDMG 281 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~-vi~~~S~SK~~g 281 (483)
|++++|+||||.+++ +++|+++|+++|++||+||+|+.+.++. . ..++..... ..++ +++++||||.+|
T Consensus 177 v~~~~~~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~-~-~~~~~~~~~-----~~~~~di~~~s~sK~~~ 246 (398)
T 3a2b_A 177 ICTDGIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGH-K-GAGTASHFG-----LNDDVDLIMGTFSKSLA 246 (398)
T ss_dssp EEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG-G-GCCHHHHHT-----CGGGCSEEEEESSSTTC
T ss_pred EEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCC-C-CCchHhhcC-----CCcCCeEEEeccccccc
Confidence 999999999999998 8888999999999999999998765643 1 133333321 1234 689999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHh-h--hcCCCChHHHHH-HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKM-S--SFGLVSSQTQHL-IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~-~--~~~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
++| ||+++ ++.+.+.+... . .....+++.|.+ +..++... ++.++.+++++++++++.+.|++.|+++
T Consensus 247 ~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 318 (398)
T 3a2b_A 247 SLG---GFVAG-DADVIDFLKHNARSVMFSASMTPASVASTLKALEII----QNEPEHIEKLWKNTDYAKAQLLDHGFDL 318 (398)
T ss_dssp SSC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH----HHCTHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred CCC---cEEEe-CHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 778 99999 46666655442 2 223345566654 44666432 2356778888999999999999889888
Q ss_pred ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 358 LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 358 ~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
.++. |+|+|+.++... ...+++..|+++ ||.+.||..|... .++++||+++. .+++++++++++|+++++
T Consensus 319 ~~~~-g~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 319 GATE-SPILPIFIRSNE------KTFWVTKMLQDD-GVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp CSCC-SSEEEEECCCHH------HHHHHHHHHHHT-TEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCEEEEEcCCHH------HHHHHHHHHHHC-CcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 7776 579999997532 234678888866 9999999888643 35799999986 599999999999999886
Q ss_pred Hh
Q 011570 436 KN 437 (483)
Q Consensus 436 ~~ 437 (483)
+.
T Consensus 391 ~~ 392 (398)
T 3a2b_A 391 QA 392 (398)
T ss_dssp HC
T ss_pred Hh
Confidence 54
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=291.43 Aligned_cols=304 Identities=17% Similarity=0.140 Sum_probs=228.4
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
..+..++++.++++++ .+++|++++| ++++..++.+++++||.|+++.|+|+.+...++.. |.+++.++
T Consensus 87 ~~~~~~l~~~la~~~~---------~~~~i~~~sG-t~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~ 155 (399)
T 3tqx_A 87 QTIHKELEKDISEFLG---------TDDTILYSSC-FDANGGLFETLLGPEDAIISDELNHASIIDGIRLC-KAQRYRYK 155 (399)
T ss_dssp BHHHHHHHHHHHHHHT---------CSEEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSC-CSEEEEEC
T ss_pred chHHHHHHHHHHHHHC---------CCcEEEECch-HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCceeEeC
Confidence 3346788888888875 2356666665 67999999999999999999999999999988875 99999988
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
. .|++.|++.+++...++.++++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+.. . .
T Consensus 156 ~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-~-~ 223 (399)
T 3tqx_A 156 N-------NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGE-N-G 223 (399)
T ss_dssp T-------TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-T-S
T ss_pred C-------CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC-C-C
Confidence 5 4678899998876544447899999999999999999 8899999999999999999996433333 2 2
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc---CCCChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF---GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~ 328 (483)
.+......- ..+.+++++|+||.+| |++.||+++ ++.+.+.+... ..+ +..+++.+.++...+...
T Consensus 224 ~~~~~~~~~----~~~~di~~~s~sK~~~--g~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 293 (399)
T 3tqx_A 224 RGTPEYCGV----ADRVDILTGTLGKALG--GASGGYTSG-HKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL--- 293 (399)
T ss_dssp CCHHHHHTC----TTCCSEEEEESSSSSC--SSCCEEEEE-CHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH---
T ss_pred CchHHhhCC----CCCCcEEEecchHhcc--cCceEEEEc-CHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH---
Confidence 233333210 1255688999999997 344499999 45565555443 222 245666666665555432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC-CCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH-CPN 407 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~-~~~ 407 (483)
.++.++.+++++++++++.+.|++.|+++.++.+ .|+|+.++... ...+++..|++ +||.+.|+..+. ..+
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~-~gi~v~~~~~~~~~~~ 365 (399)
T 3tqx_A 294 KTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH-PIIPVMLGDAQ------LATNMADHLLQ-EGIYVVGFSYPVVPMG 365 (399)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSS-SEEEEEEECHH------HHHHHHHHHHH-TTEECCEECTTTSCTT
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC-CEEEEEeCCHH------HHHHHHHHHHH-CCCEEeeeCCCCCCCC
Confidence 2446778888999999999999988988886665 47888887532 23477888886 599999876543 234
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++||+++. .+++++++++++|++++++.
T Consensus 366 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 366 KARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 5799999974 69999999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=287.50 Aligned_cols=340 Identities=16% Similarity=0.123 Sum_probs=243.3
Q ss_pred CCCcccccchhhhhc---HHHHHHHHhcCCCCccccccccccccccccCC--CCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLAENLLC---HELVEDWLMNNPKASICSAEGLNEFKGIAIFQ--DYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~--~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
...+|||+.+ ++++ ++.+.+++.+.... .+. ......|+ ...+..+||+++|++++ ++
T Consensus 44 g~~~id~~~~-~~~g~~~~~~v~~a~~~~~~~-----~~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~~- 106 (401)
T 1fc4_A 44 GSHVINFCAN-NYLGLANHPDLIAAAKAGMDS-----HGF--GMASVRFICGTQDSHKELEQKLAAFLG--------ME- 106 (401)
T ss_dssp SCEEEECCCS-CTTSCTTCHHHHHHHHHHHHH-----HCS--CCCSCHHHHCCBHHHHHHHHHHHHHHT--------CS-
T ss_pred CccEEEeecc-CcccccCCHHHHHHHHHHHHH-----hCC--CCCCCCcccCCcHHHHHHHHHHHHHhC--------CC-
Confidence 4567899988 4553 44555544431000 000 00011232 24467899999999985 33
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
++|++++| ++++..++.+++++||.|+++.|+|+.+...++.. |.+++.++. .|++.|++++++...++.+
T Consensus 107 ~~i~~~sG-s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 107 DAILYSSC-FDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp EEEEESCH-HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT-------TCHHHHHHHHHHHHHTTCS
T ss_pred cEEEeCCh-HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHc-CCceEEECC-------CCHHHHHHHHHHhhccCCC
Confidence 56666665 66888899999999999999999998888887765 999998873 4789999998764333336
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc-cCcc-CCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA-ATVF-TKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~-~~~~-~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
+++|++++||||||.+++ +++|+++|+++|++||+||+|+ ++.+ .+ ..+.+...+ ..+.+++++|||
T Consensus 178 ~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g-~~~~~~~~~-------~~~~di~~~s~s 246 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG-RGSHEYCDV-------MGRVDIITGTLG 246 (401)
T ss_dssp SEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS-CCHHHHTTC-------TTCCSEEEEESS
T ss_pred ceEEEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC-CccHHHcCC-------CcCCcEEEecch
Confidence 889999999999999999 8888999999999999999995 6532 22 222222222 224578899999
Q ss_pred ccc-CCCCceEEEEEecChHHHHHHHHhh-h---cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011570 278 KDM-GFPGFRVGIIYSYNDQVVSCARKMS-S---FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ 352 (483)
Q Consensus 278 K~~-g~~GlRiG~li~~~~~l~~~~~~~~-~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~ 352 (483)
|.+ |.+| ||+++ ++.+.+.+.... . .+.++++++.++.+.++... . .++.+++++++++++.+.|++
T Consensus 247 K~~~~~~g---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~-~~~~~~~~~~~~~~l~~~L~~ 318 (401)
T 1fc4_A 247 KALGGASG---GYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVE---A-GSELRDRLWANARQFREQMSA 318 (401)
T ss_dssp STTCSSSC---EEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHH---T-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCC---EEEEc-CHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHh---c-CHHHHHHHHHHHHHHHHHHHH
Confidence 999 6555 99999 566666655432 1 23567888888777664321 1 355677788889999999998
Q ss_pred CCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 353 VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 353 ~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
.|+++.+ ..++|+|++++... ...++.+.|.++ ||.+.+|..|+.+ ..+++||+++. .+++++++++++|
T Consensus 319 ~g~~~~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l 390 (401)
T 1fc4_A 319 AGFTLAG-ADHAIIPVMLGDAV------VAQKFARELQKE-GIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAF 390 (401)
T ss_dssp TTCCBCC-SSSSEEEEEEECHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcccC-CCCCEEEEEcCChH------HHHHHHHHHHHC-CcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 8888774 45678999986421 233677777754 9999999877643 34689999975 5999999999999
Q ss_pred HHHHHHh
Q 011570 431 TSFMLKN 437 (483)
Q Consensus 431 ~~~l~~~ 437 (483)
++++++.
T Consensus 391 ~~~~~~~ 397 (401)
T 1fc4_A 391 TRIGKQL 397 (401)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998765
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=285.09 Aligned_cols=298 Identities=13% Similarity=0.123 Sum_probs=234.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~ 172 (483)
..++++++++++.+.+| ++++ +|++|+|+++++..++.+++++||+|+++.|+|+. +...++.. |.+++.++
T Consensus 65 ~~~~~~~~~~~la~~~g----~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 139 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQ----TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRY-GADVRTIS 139 (393)
T ss_dssp HHHHHHHHHHHHHHHHT----CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHc-CCceEEEe
Confidence 56788888888888777 4677 99999999999999999999999999999999998 88877775 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+++ ++.+|++.|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+||+|. ++. .+
T Consensus 140 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~---~g~-~~- 204 (393)
T 1vjo_A 140 KPW--GEVFSLEELRTALETH-----RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS---LGG-VP- 204 (393)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT---TTT-SC-
T ss_pred cCC--CCCCCHHHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc---ccC-cC-
Confidence 875 4679999999999752 5789999999999999998 7888999999999999999998 332 21
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh---------------------hhcC-CC
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM---------------------SSFG-LV 310 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~---------------------~~~~-~~ 310 (483)
.++. ..+.++++.|+||.++.+| |+||++++ +.+.+.+... ...+ ..
T Consensus 205 ~~~~---------~~~~di~~~s~sK~l~~~~-~~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (393)
T 1vjo_A 205 IFLD---------AWGVDLAYSCSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTA 273 (393)
T ss_dssp CCTT---------TTTCSEEECCSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCC
T ss_pred Cccc---------ccCccEEEEcCcccccCCC-ceEEEEEC-HHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCC
Confidence 1211 2356788999999998777 99999994 5555544221 1112 56
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc---eEEEeeecCchhhccChHHHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
+.++|.++..++... .+.++++.+++++++++++.+.|++.|+++..+.+ +.++++.++...+ ..++++
T Consensus 274 ~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 345 (393)
T 1vjo_A 274 PINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVD------GKAVAR 345 (393)
T ss_dssp CHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCC------HHHHHH
T ss_pred CHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCCCCC------HHHHHH
Confidence 778888887777542 12346777888999999999999988888877654 3577888764221 236788
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l 434 (483)
.|++++||.++||..|. .++++||++ +. .+++++++++++|++++
T Consensus 346 ~l~~~~gi~v~~g~~~~--~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 346 RLLNEHNIEVGGGLGEL--AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEecCcccc--CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 88866699999998765 367999994 43 47778999999999875
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=278.71 Aligned_cols=303 Identities=15% Similarity=0.147 Sum_probs=236.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
..++++++++++.+.+| .+ +++++++|+|+++++..++.+++++||+|+++.|+|++ +...+... |.+++.++.
T Consensus 51 ~~~~~~~~~~~la~~~g--~~-~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 126 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLE--VE-KGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESN-GRKAVVLEY 126 (386)
T ss_dssp HHHHHHHHHHHHHHHHT--CS-SSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC--CC-CCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHh-CCceEEEec
Confidence 37788888888888777 22 36789999999999999999999999999999999987 77777775 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
+. ++.+|+++|++++++ ++++++|++++|+||||.+.+ +++|+++|+++|++||+||+|+.+.+. .
T Consensus 127 ~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-----~ 192 (386)
T 2dr1_A 127 EP--GKAVKPEDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-----I 192 (386)
T ss_dssp CT--TCCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-----C
T ss_pred CC--CCCCCHHHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-----c
Confidence 75 567999999999864 237899999999999999998 788899999999999999999854321 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH----------------HHh----hhcCCCChH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA----------------RKM----SSFGLVSSQ 313 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~----------------~~~----~~~~~~s~~ 313 (483)
++. ..+.++++.|+||.++.+ .++||++++ +.+.+.+ ... ...++.+.+
T Consensus 193 ~~~---------~~~~di~~~s~sK~~~~~-~g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (386)
T 2dr1_A 193 KFD---------KWGLDVVFSSSQKAFGVP-PGLAIGAFS-ERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMP 261 (386)
T ss_dssp CTT---------TTTCSEEEEETTSTTCCC-SSCEEEEEC-HHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHH
T ss_pred ccc---------ccCCcEEEEeccccccCC-CceEEEEEC-HHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHH
Confidence 211 235678899999999865 248999995 5554433 111 223456777
Q ss_pred HHHHHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
.|.++..++.. +.+. +++.+++++++++++.+.|+++|+++..+. .+.++|++++...+ ..++.+.
T Consensus 262 ~~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 332 (386)
T 2dr1_A 262 QVFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGIK------GDEVYEA 332 (386)
T ss_dssp HHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTCC------HHHHHHH
T ss_pred HHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCCC------HHHHHHH
Confidence 88887777643 2222 567778889999999999998888877664 36789999874221 2367788
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
|+++ ||.+.||..+. .++++||+++. .+++++++++++|++++++...
T Consensus 333 l~~~-gi~v~~~~~~~--~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 333 MRKR-GFELAKGYGSV--KEKTFRIGHMGYMKFEDIQEMLDNLREVINELKK 381 (386)
T ss_dssp HHHT-TEECEECCGGG--TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CeEEecCcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 8766 99999998653 45799999986 5999999999999999887643
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=277.65 Aligned_cols=335 Identities=10% Similarity=0.073 Sum_probs=238.4
Q ss_pred CCCcccccchhh-hh-cHHHHHHHHhcCCCCccccccccccccccccC--CCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAEN-LL-CHELVEDWLMNNPKASICSAEGLNEFKGIAIF--QDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+..+|||+.+++ .+ +++.+.+++.+.... .+. ......| +...+..+||++++++++ + ++
T Consensus 38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~--~~~~~~~~~g~~~~~~~l~~~la~~~g--------~-~~ 101 (384)
T 1bs0_A 38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-----FGI--GSGGSGHVSGYSVVHQALEEELAEWLG--------Y-SR 101 (384)
T ss_dssp TEEEEECSCCCTTSGGGCHHHHHHHHHHHHH-----HCS--CCCSBTTTTCCCHHHHHHHHHHHHHHT--------C-SE
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHH-----hCC--CCCCcCcccCChHHHHHHHHHHHHHhC--------C-Cc
Confidence 346789999876 32 334444444331000 000 0011223 344567899999999985 2 25
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
.|++++| ++++..++.+++++||.|+++.|+|+.+...++.. |.+++.+|. .|++.|++++++. ..++
T Consensus 102 ~i~~~sG-t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~-------~d~~~l~~~l~~~---~~~~ 169 (384)
T 1bs0_A 102 ALLFISG-FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH-------NDVTHLARLLASP---CPGQ 169 (384)
T ss_dssp EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT-------TCHHHHHHHHHSC---CSSC
T ss_pred EEEeCCc-HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHc-CCCEEEeCC-------CCHHHHHHHHHhc---CCCC
Confidence 5666665 89999999999999999999999999998888875 999999873 4788999888641 1136
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++|++++||||||.+++ +++|+++|+++|++||+||+|+.+.+.. .. .++..... ....++++||||.+
T Consensus 170 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-~~-~~~~~~~~------~~~di~~~s~sK~~ 238 (384)
T 1bs0_A 170 QMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE-QG-RGSCWLQK------VKPELLVVTFGKGF 238 (384)
T ss_dssp EEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG-GG-CCHHHHTT------CCCSEEEEESSSTT
T ss_pred eEEEEeCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecC-CC-CchHHhcC------CCCcEEEeeccchh
Confidence 88899999999999999 7888999999999999999998654431 11 12222211 12348899999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhh-hc---CCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCc
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMS-SF---GLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQVGI 355 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~gi 355 (483)
|++| ||+++ ++.+.+.+.... .+ ...+++.+.++.+.++.. .+ +.++.+++++++++++.+.|+++|+
T Consensus 239 ~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (384)
T 1bs0_A 239 GVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVI---RSDEGDARREKLAALITRFRAGVQDLPF 311 (384)
T ss_dssp SSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hccC---cEEEe-CHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9777 99999 466666554432 22 246777777766666432 21 3567778889999999999999898
Q ss_pred eeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 356 GCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 356 ~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
++.+ .++.|+|++++... ...++.+.|+++ ||.+.+|..|+.. +.+++||+++. .+++++++++++|+++
T Consensus 312 ~~~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~-gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 312 TLAD-SCSAIQPLIVGDNS------RALQLAEKLRQQ-GCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECS-CCSSBCCEEEESHH------HHHHHHHHHHHT-TEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred cccC-CCCCEEEEEeCCHH------HHHHHHHHHHHC-CcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 8775 44567888886421 233677777765 9999999877532 34789999985 4899999999999864
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=279.82 Aligned_cols=301 Identities=18% Similarity=0.184 Sum_probs=225.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCCeEEEeCCCCcChHHHH---hhhc
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGDAFLVPTPYYPGFDRDL---RWRT 164 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~---~~~~ 164 (483)
...+..++++.++++++ +++++|++|+|+++++..++.++. ++||+|+++.|+|+.+...+ +..
T Consensus 42 ~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~- 112 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMK- 112 (384)
T ss_dssp HHHHHHHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHcC--------CCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhc-
Confidence 34556889999999986 467899999999999999999997 89999999999999886665 454
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC--cEEEEccccc
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN--IHLVCDEIYA 242 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~--~~iI~Deay~ 242 (483)
|.+++.+++++ ++.+|++.|++++.+ ++++|++++|+||||.+++ +++|.++|+++| ++||+||+|+
T Consensus 113 g~~~~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 113 GFKVKYVPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp TCEEEECCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred CCEEEEEccCC--CCccCHHHHHHHhCC------CCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh
Confidence 99999999864 467999999998853 7899999999999999999 688888899999 9999999997
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHHH-----hhhcCCCChHHHH
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCARK-----MSSFGLVSSQTQH 316 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~~-----~~~~~~~s~~~q~ 316 (483)
|.. .. .++. ..+.++++.|+||.+|++| +||++++++. +...+.. ....+..+.+.+.
T Consensus 182 ---~~~-~~-~~~~---------~~~~di~~~s~sK~~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (384)
T 1eg5_A 182 ---IGK-IP-FSLE---------KLEVDYASFSAHKFHGPKG--VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIV 245 (384)
T ss_dssp ---TTT-SC-CCCT---------TTCCSEEEEEGGGGTSCTT--CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHH
T ss_pred ---cCC-cc-cCch---------hcCCCEEEecHHHhcCCCc--eEEEEEcCCCccccccccCcccccccCCCCChHHHH
Confidence 333 21 1211 1245688999999999888 7999996542 1221111 0122457788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC-c--eEEEeeecCchhhccChHHHHHHHHHHHHhc
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN-A--GLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~-~--g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~ 393 (483)
++..++... .+++++.+++++++++++.+.|.+.|+++..+. + +.++++.++.. + ..++.+.|. ++
T Consensus 246 a~~~al~~~---~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l~-~~ 314 (384)
T 1eg5_A 246 GAARAMEIA---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-R------GSTLQNLLS-GY 314 (384)
T ss_dssp HHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-C------HHHHHHHHH-HT
T ss_pred HHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-C------HHHHHHHHh-hC
Confidence 877777541 345677888889999999999988888876542 1 24667777631 1 236676665 67
Q ss_pred CeEeeCCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 394 KLNVSPGSSFHCP-----------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 394 gV~v~pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
||.+.+|..|+.. .++++||+++. .+++++++++++|++++++.++
T Consensus 315 gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 315 GIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp TEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999877532 13689999985 5999999999999999887643
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.28 Aligned_cols=340 Identities=16% Similarity=0.188 Sum_probs=241.7
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCC--CCCcHHHHHHHHHHHHhhhCCCCCc-CCCcE
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQD--YHGLPEFRNAVAKFMGKVRGNRITF-DPDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~Lr~~ia~~~~~~~g~~~~~-~~~~i 122 (483)
.++++|+.+++..+++.+.+++.+.... ...........|++ ..+..++|++++++++ . ++++|
T Consensus 27 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~--------~~~~~~v 93 (420)
T 1t3i_A 27 HPLVYLDNAATSQKPRAVLEKLMHYYEN-----DNANVHRGAHQLSVRATDAYEAVRNKVAKFIN--------ARSPREI 93 (420)
T ss_dssp EECEECBTTTCCCCCHHHHHHHHHHHHH-----TCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT--------CSCGGGE
T ss_pred CceEEecCCccCCCCHHHHHHHHHHHHh-----ccCCCCcccchHHHHHHHHHHHHHHHHHHHcC--------CCCCCeE
Confidence 3578999888775455555554431100 00000001234543 3567899999999986 3 57899
Q ss_pred EEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcC----hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 123 VMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPG----FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~----~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
++|+|+++++..++.++ +++||+|+++.|+|+. +...++.. |.+++.+++++ ++.+|++.|++++.+
T Consensus 94 ~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~--~~~~d~~~l~~~l~~-- 168 (420)
T 1t3i_A 94 VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAVLKFVQLDE--QESFDLEHFKTLLSE-- 168 (420)
T ss_dssp EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCEEEEECBCT--TSSBCHHHHHHHCCT--
T ss_pred EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhc-CcEEEEeccCC--CCCcCHHHHHHhhCC--
Confidence 99999999999999999 8999999999999998 45555555 99999999863 567999999998853
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++++|++++|+||||.+++ +++|.++|+++|++||+||+|+.. . .. .++..+ +.++++.
T Consensus 169 ----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~-~~-~~~~~~---------~~di~~~ 227 (420)
T 1t3i_A 169 ----KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAP---H-YP-LDVQLI---------DCDWLVA 227 (420)
T ss_dssp ----TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTT---T-SC-CCHHHH---------TCSEEEE
T ss_pred ----CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccC---C-cc-Cchhhc---------CCCEEEE
Confidence 7899999999999999999 888899999999999999999742 1 11 133222 4567889
Q ss_pred cCccccCCCCceEEEEEecChHHHHHHHHhhh---------------------c-CCCChHHHHHHHH-hcCChhHHH-H
Q 011570 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---------------------F-GLVSSQTQHLIAT-MLSDDQFVE-K 330 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~---------------------~-~~~s~~~q~~~~~-~l~~~~~~~-~ 330 (483)
|+||.+|.+| +||+++ ++.+.+.+..... + ...+++.+.++.. .+.. +. .
T Consensus 228 s~sK~~~~~g--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~ 301 (420)
T 1t3i_A 228 SGHKMCAPTG--IGFLYG-KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDY---LTDL 301 (420)
T ss_dssp EGGGTTSCTT--CEEEEE-CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHH---HHHH
T ss_pred ehhhhcCCCc--eEEEEE-chHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHH---HHHh
Confidence 9999998778 899999 4555554432211 1 1244555554332 3321 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CceeecCC------ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV-GIGCLKSN------AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~------~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
.+++..++++++++++.+.|++. |+++..+. ++ ++++.++. .+ ..++.+.| .++||.+++|..|
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~-~~~~~~~~-~~------~~~~~~~l-~~~gi~v~~~~~~ 372 (420)
T 1t3i_A 302 GMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAA-LASFNVAG-LH------ASDVATMV-DQDGIAIRSGHHC 372 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCS-EEEEEETT-BC------HHHHHHHH-HTTTEECBCSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCC-EEEEEECC-CC------HHHHHHHH-HHCCeEEeecccc
Confidence 34667778888999999999988 88887664 55 55566763 11 22555544 5679999999655
Q ss_pred CC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 404 HC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 404 ~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.. ..++++||+++. .++++++.++++|+++++..++
T Consensus 373 ~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 373 TQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp CHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred chHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 21 115789999986 4999999999999999877644
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=278.02 Aligned_cols=306 Identities=12% Similarity=0.087 Sum_probs=224.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
.|+...+..++|+++|++++ .+++|++|+|++ ++..++.++. .+||.|+++.|+|+.+...++.. |+
T Consensus 86 ~~~~~~~~~~l~~~la~~~~---------~~~~i~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 154 (401)
T 2bwn_A 86 ISGTTAYHRRLEAEIAGLHQ---------KEAALVFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AG 154 (401)
T ss_dssp TBCCBHHHHHHHHHHHHHTT---------CSEEEEESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CC
T ss_pred ccCChHHHHHHHHHHHHHhC---------CCcEEEECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc-CC
Confidence 45655678999999999986 257899988877 6666666553 58999999999999999888875 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++.++.+ |++.+++.++.... .++++|++++|+||||.+++ +++|+++|+++|+++|+||+|....|
T Consensus 155 ~~~~v~~~-------d~~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 222 (401)
T 2bwn_A 155 PKRIFRHN-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMY 222 (401)
T ss_dssp CEEEECTT-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred eEEEEcCC-------CHHHHHHHHHhhcc--CCceEEEEecCcCCCCCcCC---HHHHHHHHHHcCCEEEEecccccccc
Confidence 99999864 68889888864210 26899999999999999999 78899999999999999999986555
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-h--c-CCCChHHHHHHHHhc
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-S--F-GLVSSQTQHLIATML 322 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~--~-~~~s~~~q~~~~~~l 322 (483)
+. .. .++..... + ..+.+++++||||++|++| ||+++ ++.+.+.+.... . + ...+++.+.++.+++
T Consensus 223 ~~-~g-~~~~~~~~-~---~~~~~i~~~s~sK~~~~~G---G~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al 292 (401)
T 2bwn_A 223 GP-RG-AGVAERDG-L---MHRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASI 292 (401)
T ss_dssp ST-TS-CCHHHHHT-C---GGGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHH
T ss_pred CC-CC-ceeeeccC-c---cccCcEEEeechhhccCCC---CEEec-CHHHHHHHHHhCcCceecCCCCHHHHHHHHHHH
Confidence 43 21 22222111 0 1134688999999999888 99999 566655554322 1 1 224456666555555
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCC
Q 011570 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSS 402 (483)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~ 402 (483)
..... ..+++.+++++++++++.+.|.+.|+++.++.++ ++|++++... ...++.+.|++++||.+.|+..
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~------~~~~~~~~L~~~~gi~v~~~~~ 363 (401)
T 2bwn_A 293 AFLKT--AEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGSH-IVPVVIGDPV------HTKAVSDMLLSDYGVYVQPINF 363 (401)
T ss_dssp HHHTS--HHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCSSS-CEEEECCCHH------HHHHHHHHHHHHHCEECCEECT
T ss_pred HHHHh--cccHHHHHHHHHHHHHHHHHHHHCCCcccCCCCC-eEEEEeCChH------HHHHHHHHHHhcCCEEEeecCC
Confidence 32111 1135667778888899999998888888877776 8899887521 2336778887667999999987
Q ss_pred CCCC-CCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 403 FHCP-NPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 403 f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
|+.. +.+++|++++. .+++++++++++|++++++
T Consensus 364 ~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 364 PTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp TTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred CCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 7643 34699999985 5899999999999987654
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=276.86 Aligned_cols=308 Identities=14% Similarity=0.156 Sum_probs=225.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..+|++.++++++ . ++.++++++++++..++.+++++||.|+++.|+|..+...++.. |.+++.++.
T Consensus 111 ~~~l~~~la~~~g--------~--~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~-g~~~~~~~~-- 177 (427)
T 2w8t_A 111 HMEVEQALRDFYG--------T--TGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQG-NAEIVRFRH-- 177 (427)
T ss_dssp HHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHS-CSEEEEECT--
T ss_pred HHHHHHHHHHHhC--------C--CceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHc-CCeeEEeCC--
Confidence 4778888888775 2 25555666667899899999999999999999999999988875 999988873
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
.|++.|++++++.. ..++++|++++|+||||.+++ +++|+++|+++|+++|+||+|..+.+.. . ..++
T Consensus 178 -----~d~~~le~~l~~~~--~~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~-~-g~~~ 245 (427)
T 2w8t_A 178 -----NSVEDLDKRLGRLP--KEPAKLVVLEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGP-N-GRGV 245 (427)
T ss_dssp -----TCHHHHHHHHHTSC--SSSCEEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSST-T-SCCH
T ss_pred -----CCHHHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCC-C-CCch
Confidence 58999999887421 116899999999999999999 8889999999999999999999876653 2 2333
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc---CCCChHHHHHHHHhcCChhHHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF---GLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~---~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
..... + ..+.+++++||||.+|++| ||+++++ .+.+.+... ..+ +..++..+.++.+.++... .
T Consensus 246 ~~~~~-~---~~~~di~~~s~sK~~g~~g---G~v~~~~-~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~----~ 313 (427)
T 2w8t_A 246 YEAQG-L---EGQIDFVVGTFSKSVGTVG---GFVVSNH-PKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM----T 313 (427)
T ss_dssp HHHTT-C---TTCCSEEEEESSSTTCSCC---EEEEECC-TTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT----S
T ss_pred HhhcC-C---CcCCcEEEecchhhhccCC---CEEEeCH-HHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh----c
Confidence 33221 0 2355889999999999887 9999954 444433322 111 2355555555545553211 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCC
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPG 409 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~ 409 (483)
.++.+++++++++++.+.|++.|+++. ++..+.++|+.++... ...+++..|+++ ||.+.||..|+.+ +.+
T Consensus 314 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~-Gi~v~~~~~~~~~~~~~ 386 (427)
T 2w8t_A 314 AHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQE------QAAMMWQALLDG-GLYVNMARPPATPAGTF 386 (427)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHH------HHHHHHHHHHHT-TEECEEECTTTSCTTCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHH------HHHHHHHHHHHC-CeEEeeeCCCCCCCCCe
Confidence 356677788888999999988888877 5524568899987421 234678888765 9999999877643 346
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHHHhhhccCccchh
Q 011570 410 WFRVCFAN-MDDRTMEIALSRITSFMLKNVEAKVPNKKK 447 (483)
Q Consensus 410 ~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~~~~~~~ 447 (483)
++||+++. .+++++++++++|++++++..+.+.+.++|
T Consensus 387 ~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~~~~~~~~~ 425 (427)
T 2w8t_A 387 LLRCSICAEHTPAQIQTVLGMFQAAGRAVGVIGLEHHHH 425 (427)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 89999986 599999999999999999988887777665
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=269.74 Aligned_cols=336 Identities=15% Similarity=0.136 Sum_probs=239.0
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
++++|+.+.+..+++.+.+++.+. ...|+...|..++++++++++.+.+| .++++|++|+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~----------------~~~~~~~~g~~~~~~~~~~~l~~~~g----~~~~~v~~~~ 73 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARD----------------NMTQHAGYGQDSHCAKAARLIGELLE----RPDADVHFIS 73 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHH----------------TTCCCCSTTCSHHHHHHHHHHHHHHT----CTTSEEEEES
T ss_pred eeEEecCCCcCCCCHHHHHHHHHH----------------HhhccccccccHHHHHHHHHHHHHhC----CCCccEEEeC
Confidence 478888877665556666665541 12466667788999999999988877 5788999999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH--HHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHH-HhcCCceeEE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDR--DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKA-QESNIRIKGV 203 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~~~~~~~i 203 (483)
|+++++..++.+++++||+|+++.|+|+.+.. .++.. |.+++.++.+ ++.+|++.|++++++. ..++.++++|
T Consensus 74 g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 74 GGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp CHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcC-CCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 99999999999999999999999999998877 36665 9999999975 5779999999999762 0112248999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++++| ||||.+++.+++++|+++|+++|+++|+||+|.++.+...........+.. ...++..|.+|..+
T Consensus 150 ~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-------~~d~~~~s~~K~g~-- 219 (359)
T 1svv_A 150 YISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR-------LTDMFYIGATKAGG-- 219 (359)
T ss_dssp EEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-------HCSEEEEECTTTTC--
T ss_pred EEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhh-------cCCEEEEecccCCC--
Confidence 99999 799999999999999999999999999999995432222011011111111 12256779999744
Q ss_pred CceEEEEEecChHHHHHHHHh---hhc-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec
Q 011570 284 GFRVGIIYSYNDQVVSCARKM---SSF-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK 359 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~---~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~ 359 (483)
...+|+++++ +.+.+.+... ... ...+......+..++.+.. .++.+++++++++++.+.|+..|+++..
T Consensus 220 ~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 293 (359)
T 1svv_A 220 MFGEALIILN-DALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL-----FFELGAHSNKMAAILKAGLEACGIRLAW 293 (359)
T ss_dssp SSCEEEEECS-GGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH-----HHHHHHHHHHHHHHHHHHHHHTTCCBSS
T ss_pred CCceEEEEEc-ccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHhccCCeEEcc
Confidence 3568999985 4443333322 111 1123233333445566532 3556677788889999988545888887
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+.+++|+|++++. ++.+.|++++||.+.+.. ...++++||+++. .+++++++++++|++++++
T Consensus 294 ~~~~~~~~~~~~~-----------~~~~~l~~~~gi~v~~~~---~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 294 PSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL---KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp CCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE---TTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred CCccceEEEEcCH-----------HHHHHHHHhcCEEEEecc---cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 7888899987752 567777766699983211 1245689999865 5999999999999987754
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=269.64 Aligned_cols=298 Identities=14% Similarity=0.059 Sum_probs=222.0
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~ 172 (483)
+..++|+.++++++ +++++|++|+|+++++..++.+++++||+|+++.|+|+++. ..++.. |.+++.++
T Consensus 43 ~~~~l~~~la~~~g--------~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 113 (392)
T 2z9v_A 43 LYEKVVDKAQKAMR--------LSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKGFGYWAKRY-SPHLLEIE 113 (392)
T ss_dssp HHHHHHHHHHHHTT--------CSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHH-CSCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHHc-CCceEEee
Confidence 46788888888876 45789999999999999999999999999999999997652 333444 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
++++ +.+|++.|++++++ ++++++|++++|+||||.+++ +++|.++|+++|++||+||+|+. .. ..
T Consensus 114 ~~~~--~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~-~~- 179 (392)
T 2z9v_A 114 VPYN--EAIDPQAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSF---GG-MK- 179 (392)
T ss_dssp CCTT--SCCCHHHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTB---TT-BS-
T ss_pred CCCC--CCCCHHHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEccccc---CC-cc-
Confidence 8753 46899999999864 236899999999999999999 77889999999999999999973 22 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHHhh----------------------hcCC
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARKMS----------------------SFGL 309 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~~~----------------------~~~~ 309 (483)
.++.. .+..+++.|+||.+ |.+|+ ||++++ +.+.+.++... ..+.
T Consensus 180 ~~~~~---------~~~d~~~~s~sK~~~~~~g~--G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 247 (392)
T 2z9v_A 180 THPED---------CKADIYVTGPNKCLGAPPGL--TMMGVS-ERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFT 247 (392)
T ss_dssp CCGGG---------GTCSEEEECSSSTTCCCSCC--EEEEEC-HHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSC
T ss_pred ccccc---------ccceEEEecCcccccCCCce--eEEEEC-HHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCC
Confidence 12211 13457889999964 44564 999994 55555443210 1133
Q ss_pred CChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCceeec-CC---ceEEEeeecCchhhccChHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQVGIGCLK-SN---AGLFLWMDLHHLLKEQTYEAEMA 384 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~gi~~~~-~~---~g~f~~~~l~~~~~~~~~~~~~~ 384 (483)
.+...+.++.+++.. +.++ +++.+++++++++++.+.|+++|+++.. +. .++++|++++...+ ..+
T Consensus 248 ~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 318 (392)
T 2z9v_A 248 PSVSEINGLDVALDL---YLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGVD------EKA 318 (392)
T ss_dssp CCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTCC------HHH
T ss_pred CCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCCC------HHH
Confidence 444555555455432 2333 5667788888999999999888887766 32 45688898864222 236
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-c-cCCHHHHHHHHHHHHHHHHHhh
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-A-NMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~-~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+.+.|.+++||.+.+|..+. .++++||++ + ..+++++++++++|++++++.+
T Consensus 319 l~~~L~~~~gi~v~~g~~~~--~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 319 LRQAARARYGVVFSSGRGET--LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHHHCEECEECCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCEEEecCCCCC--CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 77888766699999998543 467999995 6 5799999999999999987654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=277.03 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=221.0
Q ss_pred CCCCCCcHHHHHH-HHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 90 FQDYHGLPEFRNA-VAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 90 Y~~~~g~~~Lr~~-ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
|.+..+..++++. ++++++ .+ +|++|+|+++++..++.+++++||+|+++.|+|+.+...++.. |.++
T Consensus 49 ~~~~~~~~~l~~~~la~~~~--------~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~ 117 (371)
T 2e7j_A 49 EIKTPPIHDFIHNQLPKFLG--------CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNI 117 (371)
T ss_dssp ----CCHHHHHHTHHHHHTT--------SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEE
T ss_pred hhHHHHHHHHHHHHHHHHcC--------CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHc-CCeE
Confidence 4456788999999 999986 23 9999999999999999999999999999999999998888875 9999
Q ss_pred EEee--cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 169 VPVV--CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 169 ~~v~--~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+.++ .++ ++.+|++.|++++++...+ +++++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+
T Consensus 118 ~~v~~~~~~--~~~~d~~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~ 191 (371)
T 2e7j_A 118 ALVPKTDYP--DYAITPENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM 191 (371)
T ss_dssp EEECCCCTT--TCCCCHHHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB
T ss_pred EEeecccCC--CCCcCHHHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---HHHHHHHHHHcCCeEEEECccccCCC
Confidence 9999 654 4789999999999753221 37899999999999999999 68888999999999999999986322
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHH-HHHhhh---------cCCCChHHHH
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC-ARKMSS---------FGLVSSQTQH 316 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~-~~~~~~---------~~~~s~~~q~ 316 (483)
. .++..+ +..++++|+||.++ +|.|+||++++++ +.+. +..... .+..+...+.
T Consensus 192 ~-----~~~~~~---------~~di~~~s~sK~~~-~~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (371)
T 2e7j_A 192 P-----VSLKEI---------GADFIVGSGHKSMA-ASGPIGVMGMKEE-WAEIVLRRSEKYKNKEVELLGCTARGATII 255 (371)
T ss_dssp C-----CCHHHH---------TCSEEEEEHHHHSS-CCSSCEEEEECTT-TTTTTTCBCSSCTTSBGGGTTCCCCSHHHH
T ss_pred C-----CChhhc---------CCCEEEecCCcCCC-CCCCcEEEEEech-hhhhhccccccCcccccccccCCcCHHHHH
Confidence 1 233333 23478999999998 4559999999654 3333 322221 2333444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH--HHHHHHHHHhhhcCCceeecCC--ceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 317 LIATMLSDDQFVEKFIAESAKRI--AERHKAFTWGLSQVGIGCLKSN--AGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l--~~~~~~l~~~L~~~gi~~~~~~--~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
++...+. ++.. +..+++ +++++++.+.|.+.|+++..+. .+.++|++++ + ..++.+.|. +
T Consensus 256 a~~~~l~---~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~l~-~ 319 (371)
T 2e7j_A 256 TLMASFP---HVRE---RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---V------LYEISKKAK-G 319 (371)
T ss_dssp HHHHHHH---HHHH---HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---H------HHHHHHHSS-S
T ss_pred HHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---C------HHHHHHHHH-H
Confidence 4444442 1121 445566 7778888899988888887663 3458999886 1 236677766 6
Q ss_pred cCeEeeCCCCCCC----CCCCEEE-EEecc--CCHHHHHHHHHHHHHHHHH
Q 011570 393 VKLNVSPGSSFHC----PNPGWFR-VCFAN--MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 393 ~gV~v~pg~~f~~----~~~~~iR-is~~~--~~~e~l~~~l~~L~~~l~~ 436 (483)
+||.+.| ..|.. ..++++| ++++. .+++++++++++|++++++
T Consensus 320 ~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 320 GRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp GGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 7999988 43322 1257899 99985 5899999999999998865
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=272.16 Aligned_cols=288 Identities=15% Similarity=0.169 Sum_probs=210.5
Q ss_pred ccCCCCCCcH---HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HH
Q 011570 88 AIFQDYHGLP---EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DL 160 (483)
Q Consensus 88 ~~Y~~~~g~~---~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~ 160 (483)
..|++ .|.+ +|++++|++++ . +++++++|+++++..++.+++++||+|+++.|+|+.+.. .+
T Consensus 54 ~~Y~~-~~~~~~~~l~~~ia~~~g--------~--~~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~ 122 (404)
T 1e5e_A 54 YIYTR-LGNPTVSNLEGKIAFLEK--------T--EACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHAL 122 (404)
T ss_dssp CCBTT-TCCHHHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHH
T ss_pred ccccC-CcChHHHHHHHHHHHHhC--------C--CcEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHH
Confidence 45776 4556 89999999986 2 378888888999999999999999999999999999888 56
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh-cCcEEEEcc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE-KNIHLVCDE 239 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~-~~~~iI~De 239 (483)
+.. |++++.++++ |++.|++++++ ++++|++++|+||||.+++ +++|+++|++ +|++||+||
T Consensus 123 ~~~-g~~~~~v~~~-------d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De 185 (404)
T 1e5e_A 123 TKF-GIQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADN 185 (404)
T ss_dssp HHT-TCEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEEC
T ss_pred HHc-CCEEEEECCC-------CHHHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEEC
Confidence 665 9999999864 67888888753 7899999999999999998 8899999999 999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhhc---CCCChHHH
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSSF---GLVSSQTQ 315 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~~---~~~s~~~q 315 (483)
+|..+.+.. ++ . .++++++.|+||.||++|+|+ ||++++++.+.+.+...... ..++++.|
T Consensus 186 ~~~~~~~~~-----~~-~---------~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 250 (404)
T 1e5e_A 186 TFCSPMITN-----PV-D---------FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDA 250 (404)
T ss_dssp TTTCTTTCC-----GG-G---------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHH
T ss_pred CCchhhhCC-----cc-c---------cCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 998754421 11 1 156788999999999999998 99999544444255544333 24677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---------------CceeecCC----ceEEEeeecCchhhc
Q 011570 316 HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---------------GIGCLKSN----AGLFLWMDLHHLLKE 376 (483)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---------------gi~~~~~~----~g~f~~~~l~~~~~~ 376 (483)
.++...+.... .+.+...++.+.+.+.|++. |+++..++ ++++.| +++..
T Consensus 251 ~~~~~~l~~~~-------~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~--- 319 (404)
T 1e5e_A 251 WLITRGLSTLN-------IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSG--- 319 (404)
T ss_dssp HHHHHHHTTHH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTH---
T ss_pred HHHHHhHhHHH-------HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCC---
Confidence 88888877532 11222233334444444433 33333333 776666 77641
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCC-----------------------CC--CCEEEEEeccCCHHHHHHHHHHHH
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHC-----------------------PN--PGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-----------------------~~--~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
.+....++++.|| +.+|..|+. .+ ++++|||++. |++++++++|+
T Consensus 320 ------~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~---e~~~~li~~l~ 389 (404)
T 1e5e_A 320 ------FEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI---EDADELIADFK 389 (404)
T ss_dssp ------HHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHH
T ss_pred ------HHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC---CCHHHHHHHHH
Confidence 1234557778899 666665552 12 5799999983 78999999999
Q ss_pred HHHHHhhh
Q 011570 432 SFMLKNVE 439 (483)
Q Consensus 432 ~~l~~~~~ 439 (483)
++++...+
T Consensus 390 ~al~~~~~ 397 (404)
T 1e5e_A 390 QGLDALLR 397 (404)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 98876543
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=274.46 Aligned_cols=298 Identities=15% Similarity=0.177 Sum_probs=222.6
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCc-CCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcChH----HHHhh
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITF-DPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPGFD----RDLRW 162 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~----~~~~~ 162 (483)
...+..++|++++++++ . ++++|++|+|+++++..++.++ +++||+|+++.|+|++.. ..++.
T Consensus 65 ~~~~~~~l~~~la~~~~--------~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~ 136 (406)
T 1kmj_A 65 ATEKMENVRKRASLFIN--------ARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR 136 (406)
T ss_dssp HHHHHHHHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--------CCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHh
Confidence 34567899999999976 3 5789999999999999999999 899999999999987643 33455
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
. |.+++.++.++ ++.+|++.|++++.+ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|.
T Consensus 137 ~-g~~~~~~~~~~--~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~ 204 (406)
T 1kmj_A 137 V-GAELRVIPLNP--DGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQA 204 (406)
T ss_dssp H-TCEEEEECBCT--TSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTT
T ss_pred C-CCEEEEEecCC--CCCcCHHHHHHHhcc------CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhh
Confidence 4 99999999874 467899999998853 7899999999999999999 8889999999999999999997
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh----------------
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS---------------- 306 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~---------------- 306 (483)
.. . .. .++..+ +.++++.|+||.+|.+| +||+++ ++.+.+.+.....
T Consensus 205 ~g---~-~~-~~~~~~---------~~d~~~~s~~K~~g~~G--~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (406)
T 1kmj_A 205 VM---H-HP-VDVQAL---------DCDFYVFSGHKLYGPTG--IGILYV-KEALLQEMPPWEGGGSMIATVSLSEGTTW 267 (406)
T ss_dssp TT---T-SC-CCHHHH---------TCSEEEEEGGGTTSCTT--CEEEEE-CHHHHHHCCCSSCSTTSEEEEETTTEEEE
T ss_pred cC---C-CC-Cccccc---------CCCEEEEEchhccCCCC--cEEEEE-eHHHHhhcCCcccCCCceeeccccccccc
Confidence 52 1 11 222222 45688899999999888 899999 4656554432211
Q ss_pred ------c-CCCChHHHHHHH-HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC--CceEEEeeecCchhh
Q 011570 307 ------F-GLVSSQTQHLIA-TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS--NAGLFLWMDLHHLLK 375 (483)
Q Consensus 307 ------~-~~~s~~~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~--~~g~f~~~~l~~~~~ 375 (483)
+ ...+++.+.++. +++.... ..++++.+++++++++++.+.|+++ |+++..+ .++++. +.++. .+
T Consensus 268 ~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 343 (406)
T 1kmj_A 268 TKAPWRFEAGTPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIA-FNLGK-HH 343 (406)
T ss_dssp CCTTGGGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEE-EEETT-CC
T ss_pred CCCchhccCCCCCHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEE-EEECC-CC
Confidence 1 113445555433 3332111 1235667778888999999999988 8888877 676555 46652 11
Q ss_pred ccChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 376 EQTYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++.+.| .++||.+++|..|.. ..++++||+++. .+++++++++++|+++++..
T Consensus 344 ------~~~~~~~l-~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 344 ------AYDVGSFL-DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp ------HHHHHHHH-HHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHH-hhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 23566555 466999999986531 125799999986 49999999999999987653
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=272.44 Aligned_cols=298 Identities=14% Similarity=0.139 Sum_probs=226.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~ 172 (483)
..++|++++++++ .+++ +|++|+|+++++..++.+++++||+|+++.|+|+.+. ..++.. |++++.++
T Consensus 53 ~~~l~~~la~~~~--------~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 123 (396)
T 2ch1_A 53 MDEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIE 123 (396)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHHHHHHHHHc-CCceEEec
Confidence 6789999999987 4667 8999999999999999999999999999999999874 355654 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+++ ++.+|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+||+|. +.. .+
T Consensus 124 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~---~g~-~~- 188 (396)
T 2ch1_A 124 GPP--DRPFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS---LCG-VP- 188 (396)
T ss_dssp CCT--TSCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTT-BC-
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc---ccC-Cc-
Confidence 864 5679999999999752 5789999999999999999 7888999999999999999997 333 22
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh------------------------h-hc
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM------------------------S-SF 307 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~------------------------~-~~ 307 (483)
.++. ..+..+++.|++|.++ ++.++||++++ +.+.+.+... . ..
T Consensus 189 ~~~~---------~~~~d~~~~s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (396)
T 2ch1_A 189 FYMD---------KWEIDAVYTGAQKVLG-APPGITPISIS-PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYH 257 (396)
T ss_dssp CCTT---------TTTCCEEECCCC-CCC-CCSSCEEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCC
T ss_pred cchh---------hcCcCEEEEcCCcccc-CCCCeEEEEEC-HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCC
Confidence 1211 1233466789999765 44456999994 4555444221 0 11
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce----EEEeeecCchhhccChHHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG----LFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g----~f~~~~l~~~~~~~~~~~~~ 383 (483)
+..+..+|.++.+++... .+.++++.+++++++++++.+.|+++|+++..+.++ .++|++++...+ ..
T Consensus 258 ~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 329 (396)
T 2ch1_A 258 HTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVD------WW 329 (396)
T ss_dssp CCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCC------HH
T ss_pred CCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEEEcCCCCC------HH
Confidence 335667777776666531 133466778888999999999998888888777653 478888864222 23
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++.+.|++++||.+++|..+. .++++||++ +. .+++++++++++|++++++.+
T Consensus 330 ~~~~~L~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 330 KVSQYAMNNFSLEVQGGLGPT--FGKAWRVGIMGECSTVQKIQFYLYGFKESLKATH 384 (396)
T ss_dssp HHHHHHHHHHCBCCBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEecCcccc--CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 678888877799999987543 467999999 53 489999999999999988764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=269.15 Aligned_cols=298 Identities=15% Similarity=0.182 Sum_probs=218.1
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
|+......++++.++++++ .+..++++++++++..++.+++++||.|+++.|+|+.+...+... |.+++
T Consensus 100 ~g~~~~~~~l~~~la~~~g----------~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~ 168 (409)
T 3kki_A 100 LQNDYDKPMIEKRLAKFTG----------FDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYA-NAQAH 168 (409)
T ss_dssp GCSTTTSCHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHT-TCEEE
T ss_pred cCCcHHHHHHHHHHHHHhC----------CCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHc-CCeEE
Confidence 3333456788888888875 123444555579999999999999999999999999999888876 99998
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++. .|+++|++++.+. ++++|++++|+||||.+++ +++|+++|++||++||+||+|....+..
T Consensus 169 ~~~~-------~d~~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~- 232 (409)
T 3kki_A 169 PFMH-------NNCDHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGP- 232 (409)
T ss_dssp EECT-------TCHHHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSG-
T ss_pred EecC-------CCHHHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCC-
Confidence 8764 5799999999762 5789999999999999999 8889999999999999999998755543
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hh--c-CCCChHHHHHHHHhcCCh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SS--F-GLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~--~-~~~s~~~q~~~~~~l~~~ 325 (483)
.. ........ . ..+.++++.|+||++|++| ||++++++ +.+.+... .. + ...+++.+.++.+.+..
T Consensus 233 ~g-~~~~~~~~-~---~~~~di~~~s~sK~~~~~g---g~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~- 302 (409)
T 3kki_A 233 NG-AGLLAELG-L---TREVHFMTASLAKTFAYRA---GAIWCNNE-VNRCVPFISYPAIFSSTLLPYEAAGLETTLEI- 302 (409)
T ss_dssp GG-CCHHHHHT-C---GGGCSEEEEESSSTTCSSC---EEEEESSS-GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH-
T ss_pred CC-CcchhhcC-C---CCCCCEEEeecchhhCCCc---eEEEECHH-HHHHHHHhCcCccccCCCcHHHHHHHHHHHHH-
Confidence 11 12222211 0 1244588999999999664 99999654 33333221 11 1 23455555555555432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC-
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH- 404 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~- 404 (483)
.++ .++.+++++++++++.+.|++.|+++. ..++++|+.++... ...++++.|+++ ||.+.++..+.
T Consensus 303 --~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~------~~~~~~~~L~~~-Gv~v~~~~~~~~ 370 (409)
T 3kki_A 303 --IES-ADNRRQHLDRMARKLRIGLSQLGLTIR--SESQIIGLETGDER------NTEKVRDYLESN-GVFGSVFCRPAT 370 (409)
T ss_dssp --HHH-CHHHHHHHHHHHHHHHHHHHTTTCCCC--CSSSEEEEEEESHH------HHHHHHHHHHHT-TEECEEECTTSS
T ss_pred --Hhc-CHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCEEEEEeCCHH------HHHHHHHHHHHC-CceEeeeCCCCc
Confidence 222 256677888999999999999888766 35678898887532 233678888766 99998865442
Q ss_pred CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 405 CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 405 ~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..+.+++||+++. .+++++++++++|+++++.
T Consensus 371 ~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 371 SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 2345799999975 5899999999999998865
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=280.23 Aligned_cols=296 Identities=17% Similarity=0.210 Sum_probs=219.2
Q ss_pred cCCC-CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHH----Hhh
Q 011570 89 IFQD-YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRD----LRW 162 (483)
Q Consensus 89 ~Y~~-~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~----~~~ 162 (483)
.|++ ..+..++|++++++++ +++++|++|+|+++++..++.++ +++||+|+++.|+|+.+... ++.
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcC--------CCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHH
Confidence 4543 3467899999999975 46789999999999999999999 89999999999999987654 344
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHh----hcCcEEEEc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN----EKNIHLVCD 238 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~----~~~~~iI~D 238 (483)
. |.+++.++++.+.++.+|++.|++++.+ ++++|++++|+||||.+++ +++|.++|+ ++|+++|+|
T Consensus 125 ~-g~~~~~v~~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~D 194 (390)
T 1elu_A 125 F-GITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVD 194 (390)
T ss_dssp H-CCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEE
T ss_pred h-CcEEEEEcCCCCCCccchHHHHHHhcCC------CceEEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEE
Confidence 4 9999999986434678999999988753 7899999999999999999 788888888 999999999
Q ss_pred cccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--------------
Q 011570 239 EIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-------------- 304 (483)
Q Consensus 239 eay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-------------- 304 (483)
|+|.. .. .. .++. ....++++.|+||.+ .+|.++||++++++ +.+.+...
T Consensus 195 ea~~~---g~-~~-~~~~---------~~~~d~~~~s~~K~~-~~~~g~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ 258 (390)
T 1elu_A 195 GAQSA---GS-LP-LDFS---------RLEVDYYAFTGHKWF-AGPAGVGGLYIHGD-CLGEINPTYVGWRSITYGAKGE 258 (390)
T ss_dssp CTTTB---TT-BC-CCTT---------TSCCSEEEEESSSTT-CCCTTCEEEEECTT-TGGGCCCCSCCTTTEEECTTSC
T ss_pred ccccc---CC-cC-CChh---------hcCCCEEEccccccc-cCCCceEEEEECHH-hHhhcCCccccCCcccccccCc
Confidence 99973 22 11 1111 224568899999944 35677999999643 43332210
Q ss_pred ----------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec---CCceEEEeeec
Q 011570 305 ----------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK---SNAGLFLWMDL 370 (483)
Q Consensus 305 ----------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~---~~~g~f~~~~l 370 (483)
...+..+.+.+.++..++..... ..++++.+++++++++++.+.|+++ |+++.. +.+++ +++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~-~~~~~ 336 (390)
T 1elu_A 259 PTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGL-VSFTV 336 (390)
T ss_dssp EEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSE-EEEEE
T ss_pred ccccccchHhhCCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccE-EEEEc
Confidence 11244566666665555432110 1135677788899999999999987 888773 45664 44588
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
+...+ ..++.+.|. ++||.+++|. .++++||+++. .+++++++++++|++
T Consensus 337 ~~~~~------~~~~~~~l~-~~gi~v~~~~-----~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 337 DSPLG------HRAIVQKLE-EQRIYLRTIA-----DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CSSSC------HHHHHHHHH-HTTEECEEET-----TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CCCCC------HHHHHHHHH-HCCEEEEecC-----CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 63221 236777775 5699999986 35799999954 699999999999865
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=271.16 Aligned_cols=299 Identities=12% Similarity=0.114 Sum_probs=224.6
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEe
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPV 171 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v 171 (483)
+..++++.++++++ ++++ +|++|+|+++++..++.+++++||+|+++.|+|+.+. ..++.. |.+++.+
T Consensus 53 ~~~~l~~~la~~~g--------~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v 123 (393)
T 2huf_A 53 IMDDIKEGVRYLFQ--------TNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDRSADMATRY-GADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHHHHHHHHHc-CCeeEEE
Confidence 46788888888876 4555 8999999999999999999999999999999998742 233444 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ ++.+|++.|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+||++. +.. ..
T Consensus 124 ~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~---~~~-~~ 189 (393)
T 2huf_A 124 KSKV--GQSLSLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS---LGG-AP 189 (393)
T ss_dssp ECCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT---BTT-BC
T ss_pred eCCC--CCCCCHHHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc---cCC-CC
Confidence 9865 3578999999998742 6789999999999999999 7889999999999999999986 332 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccc-cCCCCceEEEEEecChHHHHHHHHh----hhc-------------------
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKD-MGFPGFRVGIIYSYNDQVVSCARKM----SSF------------------- 307 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~-~g~~GlRiG~li~~~~~l~~~~~~~----~~~------------------- 307 (483)
.++. ..+.++++.|+||. +|++|+ ||++++ +.+.+.+... .++
T Consensus 190 -~~~~---------~~~~d~~~~s~sK~l~g~~G~--G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
T 2huf_A 190 -MFMD---------RWEIDAMYTGSQKVLGAPPGI--TPVSFS-HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRI 256 (393)
T ss_dssp -CCTT---------TTTCSEEECCSSSTTCCCSSC--EEEEEC-HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCC
T ss_pred -cchh---------hcCccEEEECCCcccccCCCe--EEEEEC-HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCC
Confidence 1211 22466888999997 567887 999994 6666655432 110
Q ss_pred --CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHH
Q 011570 308 --GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 308 --~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~ 382 (483)
+..+..++.++.+++.... ...+++.+++++++++++.+.|+++|+++..+. ++++++++++...+ .
T Consensus 257 ~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~ 328 (393)
T 2huf_A 257 YHHTISSTLLYGLREAIAMAC--EEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTTIKVPQGVD------W 328 (393)
T ss_dssp CSCCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEEEECCTTCC------H
T ss_pred CCCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEEEEcCCCCC------H
Confidence 2344555555555553211 122566777888899999999988888877653 34588888863222 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
.++.+.|++++||.+++|..|. .++++||++ +. .+++++++++++|++++++.+.
T Consensus 329 ~~~~~~L~~~~gi~v~~g~~~~--~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 329 LKAAQYAMKTYLVEISGGLGPT--AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp HHHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCEEEecCcccc--cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 3677888877799999998663 367999999 64 4788999999999999887643
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=268.76 Aligned_cols=330 Identities=14% Similarity=0.161 Sum_probs=222.8
Q ss_pred CCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 45 PNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
|+.+|+|+.++++++.+.+.+++.+... ....|++..+..+||+++|++++ .+++++
T Consensus 2 ~~~~i~~~~~~~~~p~~~~~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~ 58 (347)
T 1jg8_A 2 PHMMIDLRSDTVTKPTEEMRKAMAQAEV-------------GDDVYGEDPTINELERLAAETFG----------KEAALF 58 (347)
T ss_dssp ---CEECSCGGGCCCCHHHHHHHHTCCC-------------CCGGGTCCHHHHHHHHHHHHHHT----------CSEEEE
T ss_pred CceEEEeccccCCCCCHHHHHHHhcCCC-------------CCcccCCChHHHHHHHHHHHHhC----------CceEEE
Confidence 5678999999999887777777654210 11256666678899999999986 246788
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
++|+++++.+++.++++|||+|+++.|+|..... .+... |++++.+ .++ ++.+|++++++++++.....++++
T Consensus 59 ~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~v-~~~--~~~~d~~~l~~~i~~~~~~~~~~~ 134 (347)
T 1jg8_A 59 VPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLS-GVMPHPV-PGK--NGAMDPDDVRKAIRPRNIHFPRTS 134 (347)
T ss_dssp ESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHT-CCEEEEE-CEE--TTEECHHHHHHHSCCSCTTSCCEE
T ss_pred ecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhcc-CeEEEEe-cCC--CCccCHHHHHHHhccccccccCce
Confidence 8888999999999999999999999999865332 34444 9999888 432 456899999988752100012689
Q ss_pred EEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEccccccC--ccCCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 202 GVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCDEIYAAT--VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 202 ~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~--~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
+|++++||||| |.+++.+++++|+++|+++|++||+||+|... .+.+ . +...+.. ..+.+ +.|+||
T Consensus 135 ~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~-~---~~~~~~~-----~~d~~--~~s~sK 203 (347)
T 1jg8_A 135 LIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASG-V---PVKEYAG-----YADSV--MFCLSK 203 (347)
T ss_dssp EEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHC-C---CHHHHHH-----TCSEE--EEESSS
T ss_pred EEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcC-C---ChHHhcc-----cccEE--EEeccc
Confidence 99999999999 99999999999999999999999999987421 1122 1 2233322 23443 348999
Q ss_pred ccCCCCceEEE-EEecChHHHHHHHHhhhc-C---CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 279 DMGFPGFRVGI-IYSYNDQVVSCARKMSSF-G---LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 279 ~~g~~GlRiG~-li~~~~~l~~~~~~~~~~-~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.+|++ +|| +++ ++.+.+.+...... + ..+...+.++...+.. +.+...+ ..++++.+.+.|+++
T Consensus 204 ~l~~~---~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~-~~~~~~~l~~~L~~~ 272 (347)
T 1jg8_A 204 GLCAP---VGSVVVG-DRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK------MVDRLKE-DHENARFLALKLKEI 272 (347)
T ss_dssp TTCCS---SCEEEEE-CHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH------SSTTHHH-HHHHHHHHHHHHHHH
T ss_pred ccCCC---ceEEEEc-CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHhc
Confidence 99743 574 555 56565554433222 1 1233444433333321 1111111 234557777777766
Q ss_pred Cceee-cCCceEEEeeecCc-hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHH
Q 011570 354 GIGCL-KSNAGLFLWMDLHH-LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 354 gi~~~-~~~~g~f~~~~l~~-~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L 430 (483)
|+++. .+..++|+|++++. ..+ ..++++.|. ++||.++++. .+++|++++. .+++++++++++|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~-~~gi~v~~~~------~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 273 GYSVNPEDVKTNMVILRTDNLKVN------AHGFIEALR-NSGVLANAVS------DTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp TCBCCGGGCCSSEEEEECTTSSSC------HHHHHHHHH-HHTEECEEEE------TTEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceeccCCCcceEEEEEcccccCC------HHHHHHHHH-HCCCEEecCC------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 76652 33445689999873 111 236778876 4699999752 4689999953 5999999999999
Q ss_pred HHHHHH
Q 011570 431 TSFMLK 436 (483)
Q Consensus 431 ~~~l~~ 436 (483)
++++++
T Consensus 340 ~~~l~~ 345 (347)
T 1jg8_A 340 EKLFRK 345 (347)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=269.92 Aligned_cols=304 Identities=11% Similarity=0.064 Sum_probs=223.2
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC-------------CCeEEEeCCCCcChHHHHh
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP-------------GDAFLVPTPYYPGFDRDLR 161 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~-------------gd~Vlv~~P~y~~~~~~~~ 161 (483)
+..++++++++++.+.+| +++++|++|+|+++++..++.++..+ ||+|+++.|+|+.+...++
T Consensus 66 ~~~~~~~~l~~~la~~~~----~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~ 141 (397)
T 3f9t_A 66 GTKLLEEKAVALLGSLLN----NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGRE 141 (397)
T ss_dssp HHHHHHHHHHHHHHHHTT----CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhC----CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHH
Confidence 456777777777776655 57889999999999999999998776 9999999999999999998
Q ss_pred hhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 162 WRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 162 ~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.. |.+++.+|.++ ++.+|++.|++++.+. ++++|++++|+||||.+.+ +++|+++|++||++||+||+|
T Consensus 142 ~~-g~~~~~v~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~ 210 (397)
T 3f9t_A 142 MM-DLEYIYAPIKE--DYTIDEKFVKDAVEDY-----DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAF 210 (397)
T ss_dssp HH-TCEEEEECBCT--TSSBCHHHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTT
T ss_pred Hc-CceeEEEeeCC--CCcCCHHHHHHHHhhc-----CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccc
Confidence 86 99999999875 4689999999999752 6789999999999999988 788899999999999999999
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCC------------
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL------------ 309 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~------------ 309 (483)
+.+.+.......++..+........ +..+++.|+||.++ +|+|+||+++.++.+.+.+.....+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (397)
T 3f9t_A 211 GGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYLDVDAPYLTETRQATILGTRV 288 (397)
T ss_dssp GGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCC
T ss_pred cchhhhhcccccccccccccccccc-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhhccCCccccCCCccccccccc
Confidence 8654322010000000000000001 34577889999875 888999999977665544322122211
Q ss_pred -CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 310 -VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 310 -~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
.+..++.++...+.. ..+++..++++++++++.+.|++.|+++..+..+.++|++++. ..++.+.
T Consensus 289 ~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~ 354 (397)
T 3f9t_A 289 GFGGACTYAVLRYLGR-----EGQRKIVNECMENTLYLYKKLKENNFKPVIEPILNIVAIEDED---------YKEVCKK 354 (397)
T ss_dssp SHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEEEEECTT---------HHHHHHH
T ss_pred cchHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCCccEEEEEeCC---------HHHHHHH
Confidence 123445555454432 2345666777888899999999888886554555678888764 2266777
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
|.++ ||.+.+|.. ++++||+++. .+++++++++++|+++++
T Consensus 355 l~~~-gi~v~~~~~-----~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDR-GIYVSVCNC-----VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHT-TCBCEECSS-----SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhC-CeEEeccCC-----CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 7754 999998863 5799999985 599999999999998764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=267.52 Aligned_cols=298 Identities=13% Similarity=0.169 Sum_probs=221.5
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeC-CCCcC-hHHHHhhhcCcEEEEe
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT-PYYPG-FDRDLRWRTGVQLVPV 171 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~-~~~~~~~~~G~~~~~v 171 (483)
.+..++|++++++++ .+.+++++++|+|+++++..++.+++++||.|++.. |+|+. +...+... |.+++.+
T Consensus 37 ~~~~~l~~~la~~~g------~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 109 (366)
T 1m32_A 37 GVVEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHAY 109 (366)
T ss_dssp TTHHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEEE
T ss_pred HHHHHHHHHHHHHhC------CCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHh-CCceEEE
Confidence 568999999999986 112456899999999999999999999999988776 55654 45556665 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ ++.+|++.|++++++ ..++++|++++|+||||.+++ +++|+++|+++|++||+||+|+.. . ..
T Consensus 110 ~~~~--~~~~d~~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~---~-~~ 176 (366)
T 1m32_A 110 DCGE--VARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFG---G-IP 176 (366)
T ss_dssp ECCT--TSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTT---T-SC
T ss_pred eCCC--CCCCCHHHHHHHHhc----CCCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCcccc---C-cC
Confidence 9864 457899999999975 225789999999999999999 788899999999999999999742 2 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh----------------h--h--cCCCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM----------------S--S--FGLVS 311 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~----------------~--~--~~~~s 311 (483)
.++. ..+.++++.|+||.++ ++.++||++++ +.+.+.+... . . .+..+
T Consensus 177 -~~~~---------~~~~di~~~s~~K~~~-~~~g~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (366)
T 1m32_A 177 -MDIA---------ALHIDYLISSANKCIQ-GVPGFAFVIAR-EQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 244 (366)
T ss_dssp -CCTT---------TTTCSEEEEESSSTTC-CCSSEEEEEEE-HHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred -cccc---------ccCccEEEecCccccc-CCCceEEEEEC-HHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence 1211 1245688999999874 33457999995 4443322111 0 0 13456
Q ss_pred hHHHHHHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCCceeecC---CceEEEeeecCc--hhhccChHHHHH
Q 011570 312 SQTQHLIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVGIGCLKS---NAGLFLWMDLHH--LLKEQTYEAEMA 384 (483)
Q Consensus 312 ~~~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~gi~~~~~---~~g~f~~~~l~~--~~~~~~~~~~~~ 384 (483)
.+++.++.+++.. +.++ +++.+++++++++++.+.|+++|+++..+ .+++++|++++. ..+ ..+
T Consensus 245 ~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 315 (366)
T 1m32_A 245 THTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYR------FSE 315 (366)
T ss_dssp HHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCC------HHH
T ss_pred HHHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEEEEcCccCCCC------HHH
Confidence 6666666666542 2333 46677888899999999998888877654 467799999874 211 236
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 385 ~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+.+.|.++ ||.+.+|..| .++++|++++. .+++++++++++|++++++
T Consensus 316 ~~~~l~~~-gi~v~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 316 FYRRLKEQ-GFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHT-TEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHC-CEEEECCcCC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 77777755 9999999877 36799999986 4899999999999987643
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=268.78 Aligned_cols=319 Identities=14% Similarity=0.171 Sum_probs=220.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCC-cChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYY-PGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y-~~~~~~~~~~~G~~ 167 (483)
.|.+..+..+||+++|++++ .+++++|+|+++++..++.+++++|| +++.|+| +.+...+... |.+
T Consensus 70 ~y~~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~-G~~ 136 (456)
T 2ez2_A 70 AYAGSENFYHLERTVQELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKN-GAV 136 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHT-TCE
T ss_pred hcccChhHHHHHHHHHHHhC----------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHc-CCE
Confidence 57666778999999999985 24899999999999999999999999 8889999 7777777775 999
Q ss_pred EEEeecCCC----C----CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCC-CCcCCCCHHHHHHHHHHHhhcCcEEEEc
Q 011570 168 LVPVVCDSS----N----DFKVTMEALEAAYEKAQESNIRIKGVLITNPSN-PLGTFLDRETLKDIVSFINEKNIHLVCD 238 (483)
Q Consensus 168 ~~~v~~~~~----~----~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~N-PtG~~~~~~~l~~i~~~a~~~~~~iI~D 238 (483)
++.++++++ . +|.+|+++|++++.+.. ..++++|++++|+| |||.+++.+++++|+++|++||++||+|
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D 214 (456)
T 2ez2_A 137 FVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD 214 (456)
T ss_dssp EEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEecccccccccccccccCCCCHHHHHHHHHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 999988632 1 36899999999997521 02358999999998 9999999999999999999999999999
Q ss_pred ccccc----------CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-
Q 011570 239 EIYAA----------TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF- 307 (483)
Q Consensus 239 eay~~----------~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~- 307 (483)
|+|.. ..+.+ ..+.++..... ....++++ |++|..+ +| |.||++++++.+.+.+......
T Consensus 215 e~~~~g~~~~~~~~~~~~~g-~~~~~~~~~~~-----~~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~ 285 (456)
T 2ez2_A 215 ATRCVENAYFIKEQEQGFEN-KSIAEIVHEMF-----SYADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVY 285 (456)
T ss_dssp CTTHHHHHHHHHHHSTTCTT-SCHHHHHHHHH-----TTCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCC-cchhhhhhhhc-----ccCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhc
Confidence 99975 33443 22111111111 12345544 7888765 77 7899998666666655443221
Q ss_pred ------CCCChHHHHH-HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCc---hhhcc
Q 011570 308 ------GLVSSQTQHL-IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHH---LLKEQ 377 (483)
Q Consensus 308 ------~~~s~~~q~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~---~~~~~ 377 (483)
...++....+ +..++ +.+. +...++..+..+++.+.|.+.|+++..|.+++++|++++. ..+..
T Consensus 286 ~~~~~~~~~~~~~~~a~a~~~~---~~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~ 359 (456)
T 2ez2_A 286 EGMPSYGGLAGRDMEAMAIGLR---EAMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAVFLDARRFCEHLTQD 359 (456)
T ss_dssp TCCTTTTTCCHHHHHHHHHHHH---HHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHTTTSCGG
T ss_pred cCcccccCcchhHHHHHHHHHH---HHhH---HHHHHHHHHHHHHHHHHHhcCCCccccCCCceEEEEEhHHhcCCCChh
Confidence 1223332222 22222 1110 1222333444567777777778888778888999998742 11222
Q ss_pred ChHHHHHHHHHHHHhcCeEeeC-CCCCC----------CCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhh
Q 011570 378 TYEAEMALWRVIINEVKLNVSP-GSSFH----------CPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~p-g~~f~----------~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+. ...++..|++++||.+.+ |..|. ....+++||+++. .+++++++++++|++++++..
T Consensus 360 ~~~-~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 360 EFP-AQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp GCH-HHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred hcc-HHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 111 224467776677998766 44331 1124689999975 589999999999999987643
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-31 Score=263.78 Aligned_cols=296 Identities=19% Similarity=0.192 Sum_probs=221.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCC--CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDP--DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~--~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v 171 (483)
..++++.++++++ +++ ++|++|+|+++++. ++.+++++||+|+++.|+|.+ +...++.. |.+++.+
T Consensus 37 ~~~~~~~la~~~~--------~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v 106 (384)
T 3zrp_A 37 LAYSLKGLRYVMG--------ASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGDRWEQIFKRY-PVNVKVL 106 (384)
T ss_dssp HHHHHHHHHHHHT--------CCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHHHHHHHHTTS-SCEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchHHHHHHHHHc-CCcEEEe
Confidence 4566777777765 344 88999999999999 999999999999999999965 44555554 9999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ ++.+|++.+++++.+. ++++|++++|+||||.+++ +++|.++|++||++||+|++|... . ..
T Consensus 107 ~~~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~-~~ 172 (384)
T 3zrp_A 107 RPSP--GDYVKPGEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVG---A-EE 172 (384)
T ss_dssp CCST--TCCCCHHHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTT---T-SC
T ss_pred cCCC--CCCCCHHHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECccccc---C-cc
Confidence 9875 4578999999999752 6899999999999999999 788999999999999999999742 1 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH-------------HHhh----h-------c
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA-------------RKMS----S-------F 307 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~-------------~~~~----~-------~ 307 (483)
.++. ..+.++++.|+||.++ ++.++||++++ +.+.+.+ .... . .
T Consensus 173 -~~~~---------~~~~d~~~~s~~K~~~-~~~g~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (384)
T 3zrp_A 173 -VKAE---------EWNVDVYLTASQKALG-SAAGLGLLLLS-PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAY 240 (384)
T ss_dssp -CCTT---------TTTCSEEEEETTSTTC-CCSSEEEEEEC-HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCC
T ss_pred -cccc---------ccCCCEEEecCccccc-CCCceEEEEEC-HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCc
Confidence 1111 1245688999999885 34459999995 4443333 1111 0 1
Q ss_pred -CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHH
Q 011570 308 -GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 308 -~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~ 382 (483)
+..+...+.++..++.... ...+++.+++++++++++.+.|+++|+++..+. +++++|+.++. .+ .
T Consensus 241 ~g~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~------~ 311 (384)
T 3zrp_A 241 FATPPVHVILQLAEAFRLIE--KEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILKV-AD------P 311 (384)
T ss_dssp SSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECSS-SC------H
T ss_pred CCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECCC-CC------H
Confidence 2455555555545543211 122567788888999999999998888887766 56788898875 21 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.++.+.|.++ ||.+++|..+.. +++||+++. .+++++++++++|++++++.+..
T Consensus 312 ~~~~~~l~~~-gi~v~~g~~~~~---~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 366 (384)
T 3zrp_A 312 QKVLAGTVNE-GVEFAPGVHPAF---KYFRIGHMGWVTPNDAIIAISVIERTLRKLGEP 366 (384)
T ss_dssp HHHHHHHHTT-TCCCEECCCTTC---CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHC-CEEEecCCCCCc---CEEEEeccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 3677777755 999999875432 799999865 58999999999999999887543
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-31 Score=266.38 Aligned_cols=296 Identities=10% Similarity=0.070 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCc-EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDR-IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~-i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~ 173 (483)
.++++.++++++ .+.++ |++|+|+++++..++.+++++||+|+++.|+|.+ +...++.. |.+++.+++
T Consensus 49 ~~~~~~la~~~~--------~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 119 (411)
T 3nnk_A 49 NEVMALYRGVFR--------TENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRC-RAEVHTIEV 119 (411)
T ss_dssp HHHHHHHHHHHT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHc-CCeEEEEec
Confidence 455555555554 34554 8889999999999999999999999999999976 77777775 999999998
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
++ ++.+|+++|++++++. ++++|++++|+||||.+.+ +++|+++|++||+++|+||++.. .. .+ .
T Consensus 120 ~~--~~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~---~~-~~-~ 184 (411)
T 3nnk_A 120 PW--GEVFTPDQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASL---GG-NP-L 184 (411)
T ss_dssp CT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTB---TT-BC-C
T ss_pred CC--CCCCCHHHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCccc---CC-cc-c
Confidence 64 5678999999999753 7899999999999999999 77889999999999999999863 22 11 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh----------------------------
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---------------------------- 305 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---------------------------- 305 (483)
+.. ..+.++++.|+||.++ ++.++||+++ ++.+.+.+....
T Consensus 185 ~~~---------~~~~d~~~~s~~K~l~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~ 253 (411)
T 3nnk_A 185 ETD---------VWGLDAVSAGMQKCLG-GPSGTSPITL-SARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGM 253 (411)
T ss_dssp CTT---------TTTCSEEECCSTTTTC-CCSSEEEEEE-CHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHH
T ss_pred chh---------ccCCcEEEecCccccC-CCCceEEEEE-CHHHHHHHhhcccccccccccccccccCCCCcccccchHH
Confidence 111 1245688899999854 4446899999 455555554322
Q ss_pred ----------hcCCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCceeecCCc---eEEEeeecC
Q 011570 306 ----------SFGLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQVGIGCLKSNA---GLFLWMDLH 371 (483)
Q Consensus 306 ----------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~---g~f~~~~l~ 371 (483)
..+..+..++.++..++.. ..+. +++.+++++++++++.+.|.+.|+++..+.+ ++++++.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 330 (411)
T 3nnk_A 254 VMDYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIP 330 (411)
T ss_dssp HHHHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECC
T ss_pred HHhhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECC
Confidence 1133455566555555432 2223 5677888899999999999988888776553 578889887
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
...+ ..++.+.|++++||.+++|.. ...++++||++ +. .+++++++++++|++++++..
T Consensus 331 ~~~~------~~~l~~~l~~~~gi~v~~g~~--~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 331 QGIN------GDQARKLMLEDFGIEIGTSFG--PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp TTCC------HHHHHHHHHHHHSEEEEECCG--GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC------HHHHHHHHHHhcCeEEeCccC--CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 5322 236788888777999999843 23467999998 65 489999999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-31 Score=266.18 Aligned_cols=298 Identities=13% Similarity=0.112 Sum_probs=222.5
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCCeEEEeCCCCcChHHHHhhh--cCcEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGDAFLVPTPYYPGFDRDLRWR--TGVQL 168 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~--~G~~~ 168 (483)
+..++++.++++++ +++++|++|+|+++++..++.++. ++||+|+++.|+|+.+...+... .|+++
T Consensus 44 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~ 115 (382)
T 4eb5_A 44 AVQEAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEE
Confidence 35677888888775 467899999999999999999998 89999999999999887766531 49999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.+++++ ++.+|+++|++++.+ ++++|++++|+||||.+++ +++|+++|+++|++ |+||+|. +..
T Consensus 116 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~---~g~ 180 (382)
T 4eb5_A 116 EYIPVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATAS---VGQ 180 (382)
T ss_dssp EEECBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTT---BTT
T ss_pred EEeccCC--CCccCHHHHHHHhcC------CCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchh---cCC
Confidence 9999875 467999999998853 6899999999999999999 77899999999999 9999997 332
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHH-----HhhhcCCCChHHHHHHHHhc
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCAR-----KMSSFGLVSSQTQHLIATML 322 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~-----~~~~~~~~s~~~q~~~~~~l 322 (483)
.. .++..+ +.++++.|+||.+|.+| +||++++++. +..... .....+..+...+.++..++
T Consensus 181 -~~-~~~~~~---------~~di~~~s~sK~~g~~g--~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 247 (382)
T 4eb5_A 181 -IE-VDVEKI---------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAA 247 (382)
T ss_dssp -BC-CCHHHH---------TCSEEEEETGGGTCCSS--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHH
T ss_pred -cc-cCcccc---------CCCEEEeehHHhcCCCc--eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHH
Confidence 21 233222 34578899999988667 6999986552 211110 01112334555555555554
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc---eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee
Q 011570 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS 398 (483)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 398 (483)
. ++++.+++.+++++++++++.+.|+++ |+++..+.+ +.++++.++. .+ ..++.+.|. ++||.+.
T Consensus 248 ~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~-~~gi~v~ 316 (382)
T 4eb5_A 248 E---ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IE------GESIVLSLD-MAGIQAS 316 (382)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SC------HHHHHHHHH-HHTCBCB
T ss_pred H---HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cC------HHHHHHHHH-HCCEEEe
Confidence 3 223346777888899999999999987 888776542 3467787762 11 236777776 5699999
Q ss_pred CCCCCCCC-----------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 399 PGSSFHCP-----------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 399 pg~~f~~~-----------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+|..|... .++++||+++. .+++++++++++|++++++.++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 317 TGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99865432 25799999985 5899999999999999987764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-31 Score=264.61 Aligned_cols=296 Identities=14% Similarity=0.117 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCCeEEEeCCCCcChHHHHhhh--cCcEEEEe
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGDAFLVPTPYYPGFDRDLRWR--TGVQLVPV 171 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~--~G~~~~~v 171 (483)
++++.++++++ +++++|++|+|+++++..++.++. ++||+|+++.|+|+.+...+... .|++++.+
T Consensus 47 ~~~~~la~~~~--------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v 118 (382)
T 4hvk_A 47 EAREKVAKLVN--------GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYI 118 (382)
T ss_dssp HHHHHHHHHTT--------CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcC--------CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 55666666554 567899999999999999999988 99999999999999887765432 49999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ ++.+|+++|++++.+ ++++|++++|+||||.+++ +++|+++|+++|+ ||+|++|.. .. ..
T Consensus 119 ~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~---~~-~~ 182 (382)
T 4hvk_A 119 PVGK--YGEVDVSFIDQKLRD------DTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASV---GQ-IE 182 (382)
T ss_dssp CBCT--TSCBCHHHHHHHCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTB---TT-BC
T ss_pred ccCC--CCCcCHHHHHHHhcc------CceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhc---CC-CC
Confidence 9874 458999999998863 7899999999999999999 7788999999999 999999863 22 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHH-----HhhhcCCCChHHHHHHHHhcCCh
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCAR-----KMSSFGLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~-----~~~~~~~~s~~~q~~~~~~l~~~ 325 (483)
.+.... +.++++.|+||.+|.+| +|+++++++. +..... .....+..+...+.++.+++.
T Consensus 183 -~~~~~~---------~~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~-- 248 (382)
T 4hvk_A 183 -VDVEKI---------GADMLTISSNDIYGPKG--VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE-- 248 (382)
T ss_dssp -CCHHHH---------TCSEEEEESGGGTSCTT--CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH--
T ss_pred -CCchhc---------CCCEEEEeHHHhcCCCc--eEEEEEcCccCcCcccccCCCcCccccCCcCHHHHHHHHHHHH--
Confidence 222222 34578899999888667 6777664432 100000 000123345566666555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc---eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGS 401 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~ 401 (483)
+..+++++.+++++++++++.+.|.++ |+++..+.+ +.++++.++.. + ..++.+.|. ++||.+++|.
T Consensus 249 -~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l~-~~gi~v~~g~ 319 (382)
T 4hvk_A 249 -ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI-E------GESIVLSLD-MAGIQASTGS 319 (382)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC-C------HHHHHHHHH-HTTCBCBCC-
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC-C------HHHHHHHHH-HCCEEEeeCC
Confidence 234567788888999999999999987 788776543 23666666531 1 235666665 5699999998
Q ss_pred CCCCCC-----------------CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 402 SFHCPN-----------------PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 402 ~f~~~~-----------------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.|.... ++++||+++. .+++++++++++|++++++.++.
T Consensus 320 ~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 320 ACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp -------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 776543 5799999985 58999999999999999877643
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.7e-31 Score=264.07 Aligned_cols=299 Identities=12% Similarity=0.127 Sum_probs=221.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~ 172 (483)
..++++.++++++ .+. ++|++|+|+++++..++.+++++||+|+++.++|.+ +...+... |.+++.++
T Consensus 58 ~~~l~~~la~~~~--------~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~~~ 128 (393)
T 3kgw_A 58 MEEIKQGIQYVFQ--------TRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRI-GARVHQMI 128 (393)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 3456666666654 233 469999999999999999999999999999988752 24555554 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
++++ +.+|+++|++++++. ++++|++++||||||.+++ +++|.++|++||++||+||+|.. .. ..
T Consensus 129 ~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~---g~-~~- 193 (393)
T 3kgw_A 129 KKPG--EHYTLQEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASL---GG-VP- 193 (393)
T ss_dssp CCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTT---TT-SC-
T ss_pred CCCC--CCCCHHHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccc---cC-cc-
Confidence 8753 478999999999753 6899999999999999999 78889999999999999999873 22 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-------------------------c
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-------------------------F 307 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-------------------------~ 307 (483)
.+.. ..+..+++.|+||+++ ++.++||+++ ++.+.+.+..... .
T Consensus 194 ~~~~---------~~~~d~~~~s~sK~~~-~~~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (393)
T 3kgw_A 194 IYMD---------QQGIDIMYSSSQKVLN-APPGISLISF-NDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIH 262 (393)
T ss_dssp CCTT---------TTTCCEEEEESSSTTC-CCSSCEEEEE-CHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCC
T ss_pred cchh---------hcCCCEEEecCccccc-CCCceeEEEE-CHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCC
Confidence 1111 1245677889999774 3344899999 5555555543211 1
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
+..+..++.++.+.+.... +..+++..++++++++++.+.|+++|+++..+. .++++|+.++...+ ..
T Consensus 263 ~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 334 (393)
T 3kgw_A 263 HTTPVTSLYCLRESLALIA--EQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVPAGYN------WR 334 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECCTTBC------HH
T ss_pred CCCCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCCCCCC------HH
Confidence 2345566666555553211 223577788889999999999999888876433 35678888875322 23
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
++.+.|++++||.+++|..+. .++++||++ +. .+++++++++++|++++++.++
T Consensus 335 ~~~~~l~~~~gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~~ 390 (393)
T 3kgw_A 335 DIVSYVLDHFSIEISGGLGPT--EERVLRIGLLGYNATTENVDRVAEALREALQHCPK 390 (393)
T ss_dssp HHHHHHHHHHCEECBCCCGGG--TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSCB
T ss_pred HHHHHHHHhCCEEEeCCcccC--CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhhh
Confidence 778888877799999998543 467999998 65 4899999999999999987654
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=264.25 Aligned_cols=291 Identities=13% Similarity=0.065 Sum_probs=217.3
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~ 172 (483)
+..++|+.++++++ +++++|++|+|+++++..++.+++++||+|+++.|+|+++. ..++.. |.+++.++
T Consensus 35 ~~~~l~~~la~~~g--------~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 105 (352)
T 1iug_A 35 VFLKARGLLREAFR--------TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLD 105 (352)
T ss_dssp HHHHHHHHHHHHHT--------CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHHhC--------CCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHHHHHHHHHc-CCceEEEe
Confidence 45788999999876 45789999999999999999999999999999999998864 333444 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCC
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~ 250 (483)
+++ ++.+|++++++ +++++|++++|+||||.+++ +++|.++|+++ |++||+||+|+ ++. .
T Consensus 106 ~~~--~~~~d~~~l~~---------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~~~li~D~a~~---~~~-~ 167 (352)
T 1iug_A 106 YPY--GDTPRPEDVAK---------EGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLV-G 167 (352)
T ss_dssp CCT--TCCCCTTTSCC---------SSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTT-B
T ss_pred CCC--CCCCCHHHHhc---------cCCcEEEEEEecCCcceecC---HHHHHHHHHhhCCCCEEEEECCcc---ccC-c
Confidence 865 34678888765 26889999999999999999 77889999999 99999999997 332 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHH---------H----HHh---hhcCCCChH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSC---------A----RKM---SSFGLVSSQ 313 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~---------~----~~~---~~~~~~s~~ 313 (483)
. .++.. .+..+++.|+||.+ |.+| +||++++ +.+.+. + ... ...+..+..
T Consensus 168 ~-~~~~~---------~~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (352)
T 1iug_A 168 E-VALEA---------MGVDAAASGSQKGLMCPPG--LGFVALS-PRALERLKPRGYYLDLARELKAQKEGESAWTPAIN 234 (352)
T ss_dssp C-CCSGG---------GTCSEEEEESSSTTCCCSC--EEEEEEC-HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHH
T ss_pred c-eeccc---------cCeeEEEecCcccccCCCc--eeEEEEC-HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHH
Confidence 1 12111 13457789999954 4334 8999995 443322 1 111 122445666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC-ceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN-AGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~-~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
.+.++.+++.. +.+++++.+++++++++++.+.|++.|+++..+. .++++|++++...+ ..++.+.|.+
T Consensus 235 ~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~- 304 (352)
T 1iug_A 235 LVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVP------YARVKEAFAQ- 304 (352)
T ss_dssp HHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCC------HHHHHHHHHT-
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCC------HHHHHHHHHH-
Confidence 66666665543 1222567778888999999999988888887764 56789999874222 2367777775
Q ss_pred cCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 393 VKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 393 ~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+||.+++|..+ ..++++||+++. .+++++++++++|++++++.
T Consensus 305 ~gi~v~~~~~~--~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 305 RGAVIAGGQGP--LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp TTEECEECCGG--GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc--cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 59999999733 246799999986 47999999999999988765
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=270.67 Aligned_cols=349 Identities=11% Similarity=0.078 Sum_probs=226.6
Q ss_pred CCCcccccchhh--hh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAEN--LL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...++|++.+.+ ++ +++.+.+++.+..... . .....|.+..+..+|+++|++++. + -.++
T Consensus 40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-----~----~~~~~~~~~~~~~~l~~~la~~~~---~----~~~~ 103 (426)
T 1sff_A 40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-----S----HTCFQVLAYEPYLELCEIMNQKVP---G----DFAK 103 (426)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-----S----CCCTTTEECHHHHHHHHHHHHHSS---C----SSCE
T ss_pred CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC-----C----CccccccCCHHHHHHHHHHHHhCC---c----cccc
Confidence 456789988875 33 3444555554321110 0 001135556678999999999974 1 1358
Q ss_pred cEEEeCChhHHHHHHHH---HhcCCCCeEEEeCCCCcChHH-HHhhhcCcE-------------EEEeecCC---CCCcc
Q 011570 121 RIVMSGGATGAHETVAF---CLADPGDAFLVPTPYYPGFDR-DLRWRTGVQ-------------LVPVVCDS---SNDFK 180 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~---~l~~~gd~Vlv~~P~y~~~~~-~~~~~~G~~-------------~~~v~~~~---~~~~~ 180 (483)
+|++|+|+++++..++. ++.++| .|++++|+|+.+.. .+... |.+ ++.++++. ..++.
T Consensus 104 ~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~-g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 181 (426)
T 1sff_A 104 KTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALT-GKVNPYSAGMGLMPGHVYRALYPCPLHGISED 181 (426)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHS-SCCTTTTTTSCCCCSSEEEECCCBGGGTBCHH
T ss_pred EEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhc-CCccccccccCCCCCCcEEeCCCccccccchH
Confidence 99999999999999988 677877 89999999987553 44432 543 66677643 12456
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCc-CCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHh
Q 011570 181 VTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLG-TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEI 258 (483)
Q Consensus 181 ~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l 258 (483)
+|++.|++++++.. .+.++++|+++ +|+| || .+++.+++++|+++|++||++||+||+|.++.+.+ .. .++. .
T Consensus 182 ~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~-~~~~-~ 256 (426)
T 1sff_A 182 DAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG-TL-FAME-Q 256 (426)
T ss_dssp HHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SS-SGGG-G
T ss_pred HHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCccc-ch-hhhh-h
Confidence 79999999886410 01256766663 5578 99 78899999999999999999999999999754443 21 2211 1
Q ss_pred hhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--hhcCCCChHHHHHHHHhcCChhHHHHHHHHHH
Q 011570 259 IDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--SSFGLVSSQTQHLIATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (483)
. +..+.+.||||.+|. |+|+||++++ +.+.+.+... ...+..++++|.++.+++.... + ....
T Consensus 257 ~--------~~~~di~s~sK~~~~-GlriG~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~---~--~~~~ 321 (426)
T 1sff_A 257 M--------GVAPDLTTFAKSIAG-GFPLAGVTGR-AEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE---Q--ENLL 321 (426)
T ss_dssp T--------TSCCSEEEECGGGGT-SSCCEEEEEE-HHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH---H--TTHH
T ss_pred c--------CCCCCEEEEcccccC-CCceEEEEEc-HHHHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH---h--cCHH
Confidence 1 111223499999995 9999999995 4555443321 1223467888888776654211 0 1122
Q ss_pred HHHHHHHHHHHHhhhc----CC-ceeecCCceEEEeeecCchhhc--cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 337 KRIAERHKAFTWGLSQ----VG-IGCLKSNAGLFLWMDLHHLLKE--QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~----~g-i~~~~~~~g~f~~~~l~~~~~~--~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
++++++++++.+.|.+ .. +....+. |+|+|++++..... .......+++..|++ +||.+.||..| ++
T Consensus 322 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~----~~ 395 (426)
T 1sff_A 322 QKANDLGQKLKDGLLAIAEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY----YN 395 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT----SC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC----CC
Confidence 3334444444444443 22 3334455 57999998532100 001223467777775 59999998764 46
Q ss_pred EEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 410 WFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 410 ~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++||+++. .+++++++++++|++++++.
T Consensus 396 ~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 396 VLRILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 89999973 69999999999999998765
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-30 Score=257.65 Aligned_cols=334 Identities=13% Similarity=0.139 Sum_probs=224.5
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.++|+|+.+.+..+++.+.+++.+... .....|+. .++++++++++.+.+| .+++|++|
T Consensus 7 ~~~id~~~~~~~~~~~~v~~a~~~~~~------------~~~~~~~~----~~~~~~l~~~la~~~g-----~~~~v~~~ 65 (356)
T 1v72_A 7 PPALGFSSDNIAGASPEVAQALVKHSS------------GQAGPYGT----DELTAQVKRKFCEIFE-----RDVEVFLV 65 (356)
T ss_dssp CCCCBCSCGGGCCCCHHHHHHHHHTTS------------SCCCSTTC----SHHHHHHHHHHHHHHT-----SCCEEEEE
T ss_pred CceEeeccCCccCCCHHHHHHHHhhcc------------Cccccccc----chHHHHHHHHHHHHhC-----CCCcEEEe
Confidence 357889887554455666666655210 01123443 3344444444444443 24569999
Q ss_pred CChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH--Hhhhc-CcEEEEeecCCCCCcccCHHHHHH-HHHHHH-hcCCce
Q 011570 126 GGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD--LRWRT-GVQLVPVVCDSSNDFKVTMEALEA-AYEKAQ-ESNIRI 200 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~--~~~~~-G~~~~~v~~~~~~~~~~d~~~l~~-~i~~~~-~~~~~~ 200 (483)
+|+++++..++.+++++||.|+++.|+|..+... +.... |.+++.+|.+ ++.+|+++|++ ++++.. ..+.++
T Consensus 66 ~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 66 PTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp SCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred CCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 9999999999999999999999999998766554 55433 8999998874 36799999998 775310 112368
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc--CCCCCcchHHHhhhhccccCCCeEEEEecCcc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYSLSK 278 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~--~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK 278 (483)
++|++++||| ||.+++.+++++|+++|++||++||+||+|..+.. .+ .. .....+.. ..+ +++.|+||
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~-~~-~~~~~~~~-----~~d--~~~~s~sK 212 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLG-CS-PAEMTWKA-----GVD--ALSFGATK 212 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHT-CC-TTTTTGGG-----TCC--EEEECCGG
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCC-CC-HHHhhhhh-----cCC--EEEEeccc
Confidence 9999999987 99999999999999999999999999999975311 11 11 11111111 123 33459999
Q ss_pred ccCCCCceEEEEEecChHHHHHHHHhhhc-CCC---ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q 011570 279 DMGFPGFRVGIIYSYNDQVVSCARKMSSF-GLV---SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV- 353 (483)
Q Consensus 279 ~~g~~GlRiG~li~~~~~l~~~~~~~~~~-~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~- 353 (483)
. |. .+..||+++ ++.+.+.+...... +.. +..++..+...+.+..+ .+..+++.++++++.+.|+++
T Consensus 213 ~-g~-~~G~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~L~~~~ 284 (356)
T 1v72_A 213 N-GV-LAAEAIVLF-NTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLG 284 (356)
T ss_dssp G-TC-SSCEEEEES-SGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCT
T ss_pred C-CC-cCccEEEEE-CHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHHHHHHhhCC
Confidence 8 43 233458887 45555544333222 211 22333334455655332 233455677888999999886
Q ss_pred CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 354 GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 354 gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
|+++..+.+++|+|++++. ++++.|. ++||.++||. |+ ++++|++++. .+++++++++++|++
T Consensus 285 g~~~~~~~~~~~~~~~~~~-----------~~~~~l~-~~gi~v~~g~-~~---~~~iRi~~~~~~~~~~i~~~~~~l~~ 348 (356)
T 1v72_A 285 GVEVLGGTEANILFCRLDS-----------AMIDALL-KAGFGFYHDR-WG---PNVVRFVTSFATTAEDVDHLLNQVRL 348 (356)
T ss_dssp TEEEESCCCSSEEEEEECH-----------HHHHHHH-HTTCBCBCSS-SS---TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CcEEccCCCccEEEEEcCH-----------HHHHHHH-hcCeEEeccc-cC---CCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 8888777778899998862 5667775 5699999987 54 6799999865 589999999999998
Q ss_pred HHHHh
Q 011570 433 FMLKN 437 (483)
Q Consensus 433 ~l~~~ 437 (483)
++++.
T Consensus 349 ~l~~~ 353 (356)
T 1v72_A 349 AADRT 353 (356)
T ss_dssp TC---
T ss_pred HHHhh
Confidence 87654
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=267.84 Aligned_cols=340 Identities=15% Similarity=0.126 Sum_probs=230.0
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCC---CcHH--HHHHHH-HHHHhhhCCCCCcCC
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYH---GLPE--FRNAVA-KFMGKVRGNRITFDP 119 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--Lr~~ia-~~~~~~~g~~~~~~~ 119 (483)
.++|+++.++|++ ++.+.+++.+.... .....|+... |.+. +++.++ +++.+.+| .++
T Consensus 23 ~~~i~~~~~~~~~-~~~v~~a~~~~~~~-----------~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g----~~~ 86 (407)
T 2dkj_A 23 REGLELIASENFV-SKQVREAVGSVLTN-----------KYAEGYPGARYYGGCEVIDRVESLAIERAKALFG----AAW 86 (407)
T ss_dssp HTSEECCTTCCCC-CHHHHHHHTSGGGG-----------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSE
T ss_pred hcceeeccCCCCC-CHHHHHHHHhhhhc-----------CcccCCCcccccCCchHHHHHHHHHHHHHHHHhC----CCc
Confidence 3568999999988 44455555431100 0123454322 4443 444333 34444444 455
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH---HHHhhhcCc--EEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD---RDLRWRTGV--QLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~---~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
++|++++|+ +++..++.+++++||+|+++.|+|+.+. ..+... |. ..+++++++ .++.+|++.|++++++.
T Consensus 87 ~~i~~~sGt-~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~- 162 (407)
T 2dkj_A 87 ANVQPHSGS-QANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFS-GKLYKVVSYGVRP-DTELIDLEEVRRLALEH- 162 (407)
T ss_dssp EECCCSSHH-HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECCCT-TTSSCCHHHHHHHHHHH-
T ss_pred ceEEecchH-HHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhc-CceEEEEecCCCc-ccCccCHHHHHHHHhhc-
Confidence 667777876 4999999999999999999999998883 334443 65 444444332 35789999999999742
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc-CccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA-TVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~-~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
++++|++++|+|| .+.+ +++|.++|+++|+++|+||+|.. +.+.+ .. .+. + . ..++++
T Consensus 163 ----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~-~~~--~-~-------~~di~~ 221 (407)
T 2dkj_A 163 ----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAG-LH-PNP--L-P-------YAHVVT 221 (407)
T ss_dssp ----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTT-CS-CCC--T-T-------TCSEEE
T ss_pred ----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccC-cc-CCc--c-c-------cccEEE
Confidence 6789999999998 5666 88899999999999999999986 33333 21 111 1 1 246789
Q ss_pred ecCccccCCCCceEEEEEecChHHHHHHHHhhhcCC---CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011570 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGL 350 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~---~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L 350 (483)
+|+||.+ +|+|+||++++++.+.+.+......+. .+.....++.+++... ...++++.+++++++++++.+.|
T Consensus 222 ~s~sK~l--~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L 297 (407)
T 2dkj_A 222 STTHKTL--RGPRGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEEL 297 (407)
T ss_dssp EESSGGG--CCCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccC--CCCCceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999954 688999999964666666655443322 2322232444444321 12346777888889999999999
Q ss_pred hcCCceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC----CCCCCCEEEEEecc-----CCH
Q 011570 351 SQVGIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF----HCPNPGWFRVCFAN-----MDD 420 (483)
Q Consensus 351 ~~~gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f----~~~~~~~iRis~~~-----~~~ 420 (483)
++.|+++.. +.+++|+|++++... . ...++.+.| .++||.+.+|..| ....++++|++++. .++
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l-~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~ 371 (407)
T 2dkj_A 298 ARRGYRIVTGGTDNHLFLVDLRPKG--L---TGKEAEERL-DAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTP 371 (407)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGT--C---CHHHHHHHH-HHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCG
T ss_pred HhCCceeecCCCCceEEEEECcccC--C---CHHHHHHHH-HHcCceecCCcCccccccccCCCceeeecccccccCCCH
Confidence 988988775 356789999987411 0 123566666 4679999999764 22235789999963 589
Q ss_pred HHHHHHHHHHHHHHHH
Q 011570 421 RTMEIALSRITSFMLK 436 (483)
Q Consensus 421 e~l~~~l~~L~~~l~~ 436 (483)
+++++++++|++++++
T Consensus 372 ~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 372 EEMPLVAELIDRALLE 387 (407)
T ss_dssp GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999887
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=260.32 Aligned_cols=297 Identities=11% Similarity=0.130 Sum_probs=220.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEE-EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIV-MSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~-it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~ 172 (483)
..++++.++++++ .++++++ +++|+++++..++.+++++||+|+++.|+|.+ +...++.. |.+++.++
T Consensus 46 ~~~l~~~la~~~g--------~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 116 (416)
T 3isl_A 46 MNETMEMLRELFQ--------TKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERY-GANVHMLE 116 (416)
T ss_dssp HHHHHHHHHHHTT--------CCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhc-CCeeEEEe
Confidence 3455555555544 4566665 88899999999999999999999999999987 66666665 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
++++ +.+|+++|++++++. ++++|++++|+||||.+++ +++|.++|+++|++||+|++|+.. . ..
T Consensus 117 ~~~~--~~~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~---~-~~- 181 (416)
T 3isl_A 117 CEWG--TVFDPEDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIG---G-CE- 181 (416)
T ss_dssp CCTT--CCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTT---T-SC-
T ss_pred cCCC--CCCCHHHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCcccc---C-CC-
Confidence 8753 478999999999742 7899999999999999999 788899999999999999998732 2 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh---------------------------
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--------------------------- 305 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--------------------------- 305 (483)
.+.. ..+..+++.|+||.++ ++.++|++++ ++.+.+.+....
T Consensus 182 ~~~~---------~~~~d~~~~s~~K~l~-g~~g~g~~~~-~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~ 250 (416)
T 3isl_A 182 VKVD---------EWKIDAAIGGTQKCLS-VPSGMAPITY-NERVADVIAARKKVERGIATQADRAALSGNRPITSNYFD 250 (416)
T ss_dssp CCTT---------TTTCSEEECCSSSTTC-CCSSEEEEEE-CHHHHHHHHTC------------------CCCCSCSTTC
T ss_pred cchh---------hcCCCEEEecCccccC-CCCCeEEEEE-CHHHHHHhhccccccccccccccchhccCCCCCCccccc
Confidence 1111 1245688899999753 4445899999 455555443211
Q ss_pred -------------hcCCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCceeecCCc---eEEEee
Q 011570 306 -------------SFGLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQVGIGCLKSNA---GLFLWM 368 (483)
Q Consensus 306 -------------~~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~---g~f~~~ 368 (483)
..+..+...+.++.+++.. ...+ +++.+++++++++++.+.|.+.|+++..+.+ +.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 327 (416)
T 3isl_A 251 LSQLEDYWSERRLNHHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAMGLRLFGDDSCKMPVVTCV 327 (416)
T ss_dssp HHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCTTEEEE
T ss_pred hHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeccCccccCCcEEEE
Confidence 1133455666665555532 2333 6777888899999999999988988876654 568888
Q ss_pred ecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHH-HHHHHHHHHHHHHHhh
Q 011570 369 DLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRT-MEIALSRITSFMLKNV 438 (483)
Q Consensus 369 ~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~-l~~~l~~L~~~l~~~~ 438 (483)
.++...+ ..++.+.|++++||.+++|... ..++++||++.. .++++ +++++++|++++++..
T Consensus 328 ~~~~~~~------~~~l~~~L~~~~gi~v~~g~~~--~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 328 EIPGGID------GESVRDMLLAQFGIEIASSFGP--LAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp ECCTTCC------HHHHHHHHHHHHCEECBCCCST--TTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred eCCCCCC------HHHHHHHHHHhCCEEEecCCCC--CCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 8874322 2377888887779999998732 346799999933 45555 9999999999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=264.42 Aligned_cols=343 Identities=14% Similarity=0.153 Sum_probs=233.6
Q ss_pred CCCcccccchhhhhcHHHHHHHHhcCCC--CccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 45 PNGVIQMGLAENLLCHELVEDWLMNNPK--ASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
..+++.|+.+.+..+++.+.+++.+... ...-.+.. . .....|.......++++.++++++ +++++|
T Consensus 20 ~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~la~~~~--------~~~~~v 88 (423)
T 3lvm_A 20 MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPAS--R-SHRFGWQAEEAVDIARNQIADLVG--------ADPREI 88 (423)
T ss_dssp CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTC--T-TSHHHHHHHHHHHHHHHHHHHHHT--------CCGGGE
T ss_pred cCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCc--c-ccchhHHHHHHHHHHHHHHHHHcC--------CCCCeE
Confidence 3556777766655555666666654321 00000000 0 000001111223566777777665 577899
Q ss_pred EEeCChhHHHHHHHHHhcC----CCCeEEEeCCCCcChHHHH---hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 123 VMSGGATGAHETVAFCLAD----PGDAFLVPTPYYPGFDRDL---RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~----~gd~Vlv~~P~y~~~~~~~---~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
++|+|+++++..++.++.+ +||.|+++.|+|+.+...+ .. .|.+++.++.++ ++.+|++.|++++.+
T Consensus 89 ~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~--~~~~d~~~l~~~i~~--- 162 (423)
T 3lvm_A 89 VFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLER-EGFEVTYLAPQR--NGIIDLKELEAAMRD--- 162 (423)
T ss_dssp EEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHH-TTCEEEEECCCT--TSCCCHHHHHHHCCT---
T ss_pred EEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHH-cCCEEEEeccCC--CCccCHHHHHHhcCC---
Confidence 9999999999999998874 8999999999999887765 43 399999999875 567899999998863
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
++++|++++|+||||.+++ +++|+++|+++|++||+||+|+...+ + .+.. ..+.++++.|
T Consensus 163 ---~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~----~-~~~~---------~~~~di~~~s 222 (423)
T 3lvm_A 163 ---DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL----P-IDLS---------QLKVDLMSFS 222 (423)
T ss_dssp ---TEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS----C-CCTT---------TSCCSEEEEE
T ss_pred ---CcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC----C-cChh---------hcCCCEEEec
Confidence 7899999999999999999 77889999999999999999874211 1 1111 2245688899
Q ss_pred CccccCCCCceEEEEEecChHHHHHHHHh---------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 011570 276 LSKDMGFPGFRVGIIYSYNDQVVSCARKM---------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAF 346 (483)
Q Consensus 276 ~SK~~g~~GlRiG~li~~~~~l~~~~~~~---------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 346 (483)
+||.+|.+| +||++++++.+ ..+... ...+..+...+.++..++. .+..++++..++++++++++
T Consensus 223 ~sK~~g~~g--~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~---~~~~~~~~~~~~~~~~~~~l 296 (423)
T 3lvm_A 223 GHKIYGPKG--IGALYVRRKPR-VRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR---IAKEEMATEMERLRGLRNRL 296 (423)
T ss_dssp STTTTSCSS--CEEEEECBTTB-CCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCCCC--eEEEEEecccc-CCCCccccCCcccccccCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999988767 89999954322 222111 1123345566655555543 22344677888899999999
Q ss_pred HHhhhcC-CceeecCCc---eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC---------------
Q 011570 347 TWGLSQV-GIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN--------------- 407 (483)
Q Consensus 347 ~~~L~~~-gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~--------------- 407 (483)
.+.|.++ |+++..+.+ +.++++.++.. + ..++...|. + |.+.+|..|....
T Consensus 297 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~l~-~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~ 366 (423)
T 3lvm_A 297 WNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-E------GESLIMALK-D--LAVSSGSACTSASLEPSYVLRALGLNDE 366 (423)
T ss_dssp HHHHTTSTTEEEESCSTTBCTTEEEEEETTS-C------HHHHHHHTT-T--EECBCCCC-----CCCCHHHHHHTCCHH
T ss_pred HHHHhcCCCEEEeCCccccCCCeEEEEeCCC-C------HHHHHHHHh-h--heeccCccccCCCccccHHHHHhCCCcc
Confidence 9999988 888876553 23555555321 1 225555554 3 9999998765421
Q ss_pred --CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 408 --PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 408 --~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
++++||+++. .+++++++++++|++++++.++.
T Consensus 367 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 402 (423)
T 3lvm_A 367 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDL 402 (423)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 3789999985 58899999999999999887654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=258.12 Aligned_cols=293 Identities=13% Similarity=0.031 Sum_probs=216.6
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~v~ 172 (483)
+..++|+.++++++ .+.++++|++|+|+++++..++.++++ |+|+++.|+|+.+ ...++.. |.+++.++
T Consensus 34 ~~~~l~~~la~~~g------~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~~~~~~~~~~-g~~~~~v~ 104 (353)
T 2yrr_A 34 VNRAIQERLAALFD------PGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQRVAEMAALH-GLDPEVLD 104 (353)
T ss_dssp HHHHHHHHHHHHHC------CCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHHHHHhC------CCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHc-CCceEEEe
Confidence 46788888888876 223478899999999999999998876 8999999999875 3444554 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+++ ++.+|++.|++++++. ++++|++++|+||||.+++ +++|.++|+++|++||+||+|+ +.. ..
T Consensus 105 ~~~--~~~~d~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~---~~~-~~- 169 (353)
T 2yrr_A 105 FPP--GEPVDPEAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT---LGM-LP- 169 (353)
T ss_dssp CCT--TSCCCHHHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT---TTT-SC-
T ss_pred CCC--CCCCCHHHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc---ccc-cc-
Confidence 875 4579999999998741 6789999999999999999 7788899999999999999996 332 22
Q ss_pred chHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHH-------------H----hhhcCCCChHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCAR-------------K----MSSFGLVSSQT 314 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~-------------~----~~~~~~~s~~~ 314 (483)
.++..+ +..+++.|++|.+ |.+| +||++++ +.+.+.+. . ....++.+...
T Consensus 170 ~~~~~~---------~~d~~~~s~~K~~~~~~g--~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 2yrr_A 170 FSMRAM---------GVDYAFTGSQKCLSAPPG--LAPIAAS-LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLL 237 (353)
T ss_dssp CCHHHH---------TCSEEECCTTSTTCCCSS--CEEEEEC-HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHH
T ss_pred cccccc---------CceEEEecCcccccCCCc--eEEEEEC-HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHH
Confidence 233332 2346788999965 4466 6999995 44443332 0 11124456666
Q ss_pred HHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCceeecCC--ceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 315 QHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQVGIGCLKSN--AGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~--~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
+.++.+++.. +.+. +++.+++++++++++.+.|++.|+++..+. +++++|++++...+ ..++.+.|.+
T Consensus 238 ~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~ 308 (353)
T 2yrr_A 238 HYALLEALDL---VLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVD------ADRLVRALYA 308 (353)
T ss_dssp HHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCC------HHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCC------HHHHHHHHHH
Confidence 6666555532 2222 567778888999999999988888877654 56677888864222 2367777775
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEe-ccCCHHHHH-HHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTME-IALSRITSFML 435 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~-~~~~~e~l~-~~l~~L~~~l~ 435 (483)
+ ||.+++|..|. .++++|+++ +..++++++ +++++|+++++
T Consensus 309 ~-gi~v~~g~~~~--~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 309 E-GVAVAGGIGPT--RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp T-TEECEECCGGG--TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred C-CEEEeCCcccc--CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 5 99999998664 357899999 435888888 99999998875
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.94 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=215.3
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhh---cCcEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWR---TGVQL 168 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~ 168 (483)
+..++++.++++++ +++++|++|+|+++++..++.++ +++||+|+++.|+|+.+...+... .|.++
T Consensus 70 ~~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v 141 (406)
T 3cai_A 70 VLDAAREAVADLVN--------ADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHT--------CCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEE
T ss_pred HHHHHHHHHHHHhC--------CCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeE
Confidence 46788888888876 46789999999999999999887 789999999999999876555431 39999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.++++++ ++.+|++.|++++.+ ++++|++++|+||||.+++ +++|.++|+++|++||+||+|.. ..
T Consensus 142 ~~v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~ 208 (406)
T 3cai_A 142 KWAEVDIE-TGELPTWQWESLISK------STRLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAA---PY 208 (406)
T ss_dssp EEECCCTT-TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTT---TT
T ss_pred EEEecCcc-cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEccccc---CC
Confidence 99998732 457899999998853 7899999999999999999 78889999999999999999973 22
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEE-EEEecChHHHHHHHHhhh-----------cCCCChHHHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVG-IIYSYNDQVVSCARKMSS-----------FGLVSSQTQH 316 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG-~li~~~~~l~~~~~~~~~-----------~~~~s~~~q~ 316 (483)
.. .++..+ +.++++.|+||.+| ++ +| |+++ ++.+.+.+..... .+..+...+.
T Consensus 209 -~~-~~~~~~---------~~d~~~~s~~K~~g-~~--~G~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~ 273 (406)
T 3cai_A 209 -RL-LDIRET---------DADVVTVNAHAWGG-PP--IGAMVFR-DPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLA 273 (406)
T ss_dssp -CC-CCHHHH---------CCSEEEEEGGGGTS-CS--CEEEEES-CHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHH
T ss_pred -CC-CCchhc---------CCCEEEeehhhhcC-CC--cCeEEEE-ehHHHhhcCCcccCCCCCccccccCCCccHHHHH
Confidence 11 233222 45678899999887 65 89 9998 4555544332211 2334555554
Q ss_pred HHHHhcCChh------------HHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC---ceEEEeeecCchhhccChH
Q 011570 317 LIATMLSDDQ------------FVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN---AGLFLWMDLHHLLKEQTYE 380 (483)
Q Consensus 317 ~~~~~l~~~~------------~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~---~g~f~~~~l~~~~~~~~~~ 380 (483)
++..++.... .+++++++.+++++++++++.+.|+++ |+++..+. ++ ++++.++. .+
T Consensus 274 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~~~-~~----- 346 (406)
T 3cai_A 274 GVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIP-VVSFAVHK-VP----- 346 (406)
T ss_dssp HHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCS-EEEEEETT-BC-----
T ss_pred HHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCC-EEEEEECC-cC-----
Confidence 4443432110 012246777888889999999999987 78777653 44 78888763 11
Q ss_pred HHHHHHHHHHHhcCeEeeCCC------CCCCC-CCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 381 AEMALWRVIINEVKLNVSPGS------SFHCP-NPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 381 ~~~~~~~~Ll~~~gV~v~pg~------~f~~~-~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
..++.+.|. ++||.+++|. .|+.. ..+++||+++. .+++++++++++|++
T Consensus 347 -~~~~~~~L~-~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 347 -ADRVVQRLA-DNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp -HHHHHHHHH-HTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHH-HCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 235677665 5699999987 33322 34789999986 489999999999875
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=255.18 Aligned_cols=299 Identities=11% Similarity=0.045 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhhhcCcEEEEeecC
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVQLVPVVCD 174 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~~~G~~~~~v~~~ 174 (483)
.+.+.+++++.+.+| .+ +++++++|+|+++++..++.++ +||+|+++.|+|+.+.. .++.. |++++.+
T Consensus 58 ~~~~~~~~~~a~~~g--~~-~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~-g~~~~~v--- 128 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLG--GD-ENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIV-NAKYFES--- 128 (374)
T ss_dssp HHHHHHHHHHHHHHT--CC-TTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE---
T ss_pred HHHHHHHHHHHHHhC--CC-CcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHc-CcEEEEe---
Confidence 445566666655555 11 3578999999999999999988 99999999998876443 45554 9998887
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeE-EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKG-VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~-i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|+++++++ . +++++ |++++||||||. +..++++|.++|+++|++||+||+|+.+....... .
T Consensus 129 ------~d~~~l~~~-~------~~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~ 192 (374)
T 2aeu_A 129 ------DKVGEILNK-I------DKDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-P 192 (374)
T ss_dssp ------SCHHHHHTT-C------CTTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-C
T ss_pred ------CCHHHHHhc-C------CCccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccccc-C
Confidence 267777765 2 37899 999999999997 78889999999999999999999998652101011 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChh--HHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQ--FVE 329 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~--~~~ 329 (483)
+...+ ..+++++|+||.+ +|+|+||++++ +.+.+.+..... + ..++++.+.++...+.... .++
T Consensus 193 ~~~~~---------~~di~~~S~sK~l--~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 260 (374)
T 2aeu_A 193 PALKL---------GADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIR 260 (374)
T ss_dssp CHHHH---------TCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHH
T ss_pred Ccccc---------CCcEEEecCcccc--cCcceEEEEEC-HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 12222 3357889999985 67899999994 566665555433 2 2357777777766665321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC----Cceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV----GIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH 404 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~ 404 (483)
++.+..+...+++++.+.+.|... |+.+. .+.|.+|.|.+++.... .....+++..+++++||.++||..|.
T Consensus 261 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~ll~~~gV~v~~g~~~~ 337 (374)
T 2aeu_A 261 KAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTIN---IKKLIEIGFNLLKNYGIITITVAGMP 337 (374)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHH---HHHHHHHHHHHHHHHCEECSTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeeccccccc---ccchHHHHHHHHHhCCEEEecCCCCC
Confidence 222221111122246666666653 66664 45555555655543211 01223477778888899999998773
Q ss_pred CCCCCEEEEEeccCC--HHHHHHHHHHHHHHHHHh
Q 011570 405 CPNPGWFRVCFANMD--DRTMEIALSRITSFMLKN 437 (483)
Q Consensus 405 ~~~~~~iRis~~~~~--~e~l~~~l~~L~~~l~~~ 437 (483)
..++++||+++..+ +.+++.+++.|++++++.
T Consensus 338 -~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 338 -GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp -SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 34568999997422 233777777777776654
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=258.11 Aligned_cols=358 Identities=11% Similarity=0.041 Sum_probs=213.2
Q ss_pred CCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...++|++.+ .++++ ++.+.+++.+. +.....|....+..++++++++++.+.++ .+++
T Consensus 28 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~~ 90 (430)
T 3i4j_A 28 GRRYLDGSSGALVANIGHGRAEVGERMAAQ-------------AARLPFVHGSQFSSDVLEEYAGRLARFVG----LPTF 90 (430)
T ss_dssp SCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCEEHHHHHHHHHHHHHTT----CTTC
T ss_pred CCEEEECCCchhccccCCCCHHHHHHHHHH-------------HHhcccccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 3457888877 44443 44455544331 11122344334567788888888877654 5678
Q ss_pred cEEEeCChhHHHHHHHHHhc--------CCCCeEEEeCCCCcChHHHHhhhcCc--------------EEEEeecCCC-C
Q 011570 121 RIVMSGGATGAHETVAFCLA--------DPGDAFLVPTPYYPGFDRDLRWRTGV--------------QLVPVVCDSS-N 177 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~~~~~~~~~G~--------------~~~~v~~~~~-~ 177 (483)
+|++|+|+++++..++.+++ .++|.|++.+|+|+++...+....+. .+..++.++. .
T Consensus 91 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
T 3i4j_A 91 RFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPAR 170 (430)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTS
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccc
Confidence 99999999999999998876 45789999999998877654433121 1222222110 0
Q ss_pred CcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CC-CCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 178 DFKVTMEALEAAYEKAQESNIRIKGVLITNP-SN-PLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 178 ~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~N-PtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
....|++.|++++++... .+++ +++++| || ++|. +++.+++++|.++|++||+++|+||+|.++.+.+ . +.+
T Consensus 171 ~~~~~~~~le~~l~~~~~--~~~~-~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g-~-~~~ 245 (430)
T 3i4j_A 171 NGAEDAEGLRALLEREGP--ETVA-AFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-S-PLA 245 (430)
T ss_dssp CHHHHHTHHHHHHHHHCG--GGEE-EEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S-SSG
T ss_pred hhhHHHHHHHHHHHhcCC--CCEE-EEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-c-hhh
Confidence 012366889998875310 2444 555566 66 8887 6688889999999999999999999998864443 2 222
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh------hhcCCCChHHHHHHHHhcCChhH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM------SSFGLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~------~~~~~~s~~~q~~~~~~l~~~~~ 327 (483)
...+.. ...++ .||||+++ +| +|+||+++ ++.+.+.+... ...+..++++|.++.++|+....
T Consensus 246 ~~~~~~-----~~~di---~t~sK~l~-~G~~r~G~~~~-~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 315 (430)
T 3i4j_A 246 LSRWSG-----VTPDI---AVLGKGLA-AGYAPLAGLLA-APQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVER 315 (430)
T ss_dssp GGGTTT-----CCCSE---EEECGGGT-TTSSCCEEEEE-CHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhcC-----CCCcE---EEEccccc-CCccccEEEEE-CHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHc
Confidence 221101 11222 37899999 69 99999999 67777766542 12345788999888877753211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccC---hHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQT---YEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~---~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
+++.++.++..+..++.+.+.+.++ ++...++.| .|+++++........ .....++++.++ ++||.++|+..+
T Consensus 316 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~ 392 (430)
T 3i4j_A 316 -EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTG-LLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGA 392 (430)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEET-TEEEEEEC------------CHHHHHHHHH-HTTEECC-----
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEE-EEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccc
Confidence 1223333333333444444444344 455566665 588888753211000 001236777777 569999998433
Q ss_pred C-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 404 H-CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 404 ~-~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
. ....+++||+++. .+++++++++++|++++++.
T Consensus 393 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 393 EPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 2235789999975 59999999999999998754
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=258.86 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=222.1
Q ss_pred CCCcccccchhh--hh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAEN--LL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...++|++.+.+ ++ +++.+.+++.+.... . ......|+ ..+..+|+++++++++ + ++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~------~---~~~~~~y~-~~~~~~l~~~la~~~g--------~-~~ 87 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK------L---LHVSNLYE-NPWQEELAHKLVKHFW--------T-EG 87 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH------C---SCCCTTBC-CHHHHHHHHHHHHTSS--------S-CE
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHh------c---cccCcccC-CHHHHHHHHHHHhhcC--------C-CC
Confidence 346789998874 33 334455544331000 0 00123564 3467899999999864 3 48
Q ss_pred cEEEeCChhHHHHHHHHH---hc---CCC-CeEEEeCCCCcChHHHHhhhcCcE-------------EEEeecCCCCCcc
Q 011570 121 RIVMSGGATGAHETVAFC---LA---DPG-DAFLVPTPYYPGFDRDLRWRTGVQ-------------LVPVVCDSSNDFK 180 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~---l~---~~g-d~Vlv~~P~y~~~~~~~~~~~G~~-------------~~~v~~~~~~~~~ 180 (483)
+|++|+|+++++..++.+ +. +|| |+|++++|+|+.+...+... +.. +..++.
T Consensus 88 ~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------- 159 (375)
T 2eh6_A 88 KVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSA-TGQPKFHKGFEPLVPGFSYAKL------- 159 (375)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHH-CBCGGGTTTTCSCCSSEEEECT-------
T ss_pred eEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhh-cCCccccCCCCCCCCCceeCCC-------
Confidence 999999999999999865 45 788 99999999998876655443 322 222221
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh
Q 011570 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII 259 (483)
Q Consensus 181 ~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~ 259 (483)
.|+++|++++++ ++++|++++|+||||.+ .+.+++++|+++|+++|+++|+||+|.++.+.+ .. .++..+.
T Consensus 160 ~d~~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~-~~~~~~~ 231 (375)
T 2eh6_A 160 NDIDSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTG-EF-YAYQHFN 231 (375)
T ss_dssp TCHHHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SS-SGGGGGT
T ss_pred chHHHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCC-cc-hhhhhcC
Confidence 488999887753 78999999999999999 568899999999999999999999999743332 21 2222221
Q ss_pred hhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHH
Q 011570 260 DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAK 337 (483)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (483)
...+++ ||||.++ +|+|+||++++ +.+.+.+.. ....+..+++.+.++.++++.. .+..+
T Consensus 232 ------~~~d~~---s~SK~~~-~g~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~ 293 (375)
T 2eh6_A 232 ------LKPDVI---ALAKGLG-GGVPIGAILAR-EEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV-------EKLLP 293 (375)
T ss_dssp ------CCCSEE---EECGGGG-TTSCCEEEEEE-HHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH-------HHHHH
T ss_pred ------CCCCEE---EEccccc-CCCCeEEEEEc-HHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHH
Confidence 112333 8899998 79999999995 455444333 1122345777777776665431 14566
Q ss_pred HHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc
Q 011570 338 RIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN 417 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~ 417 (483)
+++++++++.+.|++++....++ .|+|+|++++.. ..++++.|++ +||.+.|+. ++++||+++.
T Consensus 294 ~~~~~~~~l~~~L~~~~~~~~~~-~g~~~~~~~~~~--------~~~~~~~l~~-~gi~~~~~~------~~~iRi~~~~ 357 (375)
T 2eh6_A 294 HVREVGNYFKEKLKELGKGKVKG-RGLMLGLELERE--------CKDYVLKALE-KGLLINCTA------GKVLRFLPPL 357 (375)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEE-ETTEEEEECSSC--------CHHHHHHHHH-TTEECEEET------TTEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHhcCCceE-EEEEEEEEEcCc--------HHHHHHHHHH-CCCEEecCC------CCEEEEECCC
Confidence 77788888999998876544444 457899998741 1267777774 699999862 5789999874
Q ss_pred -CCHHHHHHHHHHHHHH
Q 011570 418 -MDDRTMEIALSRITSF 433 (483)
Q Consensus 418 -~~~e~l~~~l~~L~~~ 433 (483)
.+++++++++++|+++
T Consensus 358 ~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 358 IIQKEHIDRAISVLREI 374 (375)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 6999999999999875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-29 Score=250.67 Aligned_cols=296 Identities=14% Similarity=0.122 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---CCCCeEEEe-CCCCcChH-HHHhhhcCcEEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVP-TPYYPGFD-RDLRWRTGVQLVP 170 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~-~P~y~~~~-~~~~~~~G~~~~~ 170 (483)
..++++.++++++...+ +++++|++|+|+++++..++.++. ++||+|+++ .|+|+.+. ..++.. |.+++.
T Consensus 40 ~~~~~~~l~~~~~~~~~----~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-g~~~~~ 114 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSAAA----SKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDV 114 (385)
T ss_dssp HHHHHHHHHHHTTCCGG----GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHhCCCCC----CCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHc-CCceEE
Confidence 56788889988875433 568899999999999999999998 899999888 55666553 455554 999999
Q ss_pred eec-CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccC
Q 011570 171 VVC-DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFT 247 (483)
Q Consensus 171 v~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~ 247 (483)
+++ ++ ++.+|+++|++++++ .++++|++++|+||||.+++ +++|+++|+++ |++||+||+|.. .
T Consensus 115 v~~~~~--~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~---~ 181 (385)
T 2bkw_A 115 VRPLKI--GESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSI---G 181 (385)
T ss_dssp ECCSST--TSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTT---T
T ss_pred EecCCC--CCCCCHHHHHHHHhc-----CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECcccc---C
Confidence 998 53 567999999999874 26889999999999999999 77889999999 999999999973 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHH------------------H----Hh
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCA------------------R----KM 304 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~------------------~----~~ 304 (483)
. .. .++. ..+.++++.|+||.++ .+| +||++++++.+.+.+ . ..
T Consensus 182 ~-~~-~~~~---------~~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (385)
T 2bkw_A 182 C-EE-FEFD---------EWGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY 248 (385)
T ss_dssp T-SC-CCTT---------TTTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHH
T ss_pred C-cc-cccc---------ccCceEEEecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhh
Confidence 2 11 1211 1245678899999654 567 499999544333021 1 11
Q ss_pred hh-----cCCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhh-hcCCceeecC-----CceEEEeeecCc
Q 011570 305 SS-----FGLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGL-SQVGIGCLKS-----NAGLFLWMDLHH 372 (483)
Q Consensus 305 ~~-----~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L-~~~gi~~~~~-----~~g~f~~~~l~~ 372 (483)
.. ++..+..++.++..++.. +.+. +++.+++++++++++.+.| +++|+++..+ ..++++|++++.
T Consensus 249 ~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 325 (385)
T 2bkw_A 249 EAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVAD 325 (385)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSC
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecCC
Confidence 11 134566666666555532 2222 5666778889999999999 8888887653 246789998864
Q ss_pred hhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE-ec----cCCHHHHHHHHHHHHHHHHH
Q 011570 373 LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVC-FA----NMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 373 ~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis-~~----~~~~e~l~~~l~~L~~~l~~ 436 (483)
..++.+.|. ++||.+++|..+. ..++++||+ ++ ..+++++++++++|++++++
T Consensus 326 ---------~~~~~~~l~-~~gi~v~~g~~~~-~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 326 ---------PPDVIAFLK-SHGVVIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp ---------HHHHHHHHH-HTTEECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred ---------HHHHHHHHH-HCCeEEeCCCCcc-cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 126677776 5699999997653 245799999 76 25889999999999987653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=253.16 Aligned_cols=299 Identities=15% Similarity=0.128 Sum_probs=206.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~~ 173 (483)
..++.+++.+++.+.+| .+.+.+.+++|+|+++++..++.+++++||+|+++.|+|.+.. ..+... |.+++.++.
T Consensus 50 ~~~~~~~~~~~la~~~g--~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~v~~ 126 (376)
T 3f0h_A 50 FSSTMLENEKFMLEYAK--APEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIH-EIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHHHHHHHT--CCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC--CCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHc-CCceEEEeC
Confidence 34555666666655555 2212234556899999999999999999999999999776543 234444 999999988
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
+. ++.+|++.+++++. +++++|++++|+||||.+++ +++|.++|+++|+++|+|++|... . .. .
T Consensus 127 ~~--~~~~d~~~l~~~~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~---~-~~-~ 190 (376)
T 3f0h_A 127 EH--GKKLTKEKLYEYDN------QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFL---A-DP-F 190 (376)
T ss_dssp CT--TCCCCHHHHHTTTT------SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTT---T-SC-C
T ss_pred CC--CCCCCHHHHHHhhc------cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCcccc---C-cc-c
Confidence 64 56899999988653 37899999999999999999 888999999999999999999742 2 11 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhh-------------------hcCCCChH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMS-------------------SFGLVSSQ 313 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~-------------------~~~~~s~~ 313 (483)
.+... +..+++.|+||.++ .+| +|++++ ++.+.+.+.... ..+..+..
T Consensus 191 ~~~~~---------~~d~~~~s~~K~l~~~~G--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (376)
T 3f0h_A 191 NMNEC---------GADVMITGSQKVLACPPG--ISVIVL-APRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVG 258 (376)
T ss_dssp CHHHH---------TCSEEEEETTTTTCCCSS--CEEEEE-CHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHH
T ss_pred ccccc---------CccEEEecCcccccCCCc--eEEEEE-CHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHH
Confidence 22222 34577899999998 566 577888 455555443211 01222332
Q ss_pred HHHHHHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
.+.++.+.+. ++.+ .+++.+++++++++++.+.|.++|+++..+....+++.-.+...+ ..++.+.|.+
T Consensus 259 ~~~a~~~al~---~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~l~~ 329 (376)
T 3f0h_A 259 ILLQINERLK---EIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHPTTAN------AYDIFLKLKD 329 (376)
T ss_dssp HHHHHHHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEESSSC------HHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeCCCCC------HHHHHHHHHH
Confidence 3233333332 1222 256677788888999999999888877654433222221222111 2367888887
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++||.+++|.. ...++++||+++. .+++++++++++|++++++
T Consensus 330 ~~gi~v~~g~~--~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 330 EYGIWICPNGG--EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp HSSEECEECCG--GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEecCcc--ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 77999999842 2346789999965 5999999999999998864
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=252.74 Aligned_cols=337 Identities=13% Similarity=0.048 Sum_probs=218.1
Q ss_pred CCCcccccchh--hhhc---HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC-
Q 011570 45 PNGVIQMGLAE--NLLC---HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD- 118 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~- 118 (483)
...++|++.+. ++++ ++.+.+++.+... ....|+...+..+++.++++.+.+.++ .+
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~ 103 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQ-------------KLAHAAANDFYNIPQLELAKKLVTYSP----GNF 103 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHT-------------TSCCCSCSCSCCHHHHHHHHHHHHHSS----CSS
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHh-------------hCccccccccCCHHHHHHHHHHHHhCC----CCc
Confidence 34578998877 4442 3555555543111 011122111223344444444444444 34
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC-CCCeEEEeCCCCcChHHHHhhhcC-------------cEEEEeecCCCC--Ccc--
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD-PGDAFLVPTPYYPGFDRDLRWRTG-------------VQLVPVVCDSSN--DFK-- 180 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~-~gd~Vlv~~P~y~~~~~~~~~~~G-------------~~~~~v~~~~~~--~~~-- 180 (483)
+++|++|+|+++++..++.++.. +||.|++.+|+|+++........| .+++.+|.++.. +|.
T Consensus 104 ~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 183 (419)
T 2eo5_A 104 QKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHIN 183 (419)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCC
T ss_pred CCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccccccccc
Confidence 78999999999999999987654 489999999999765443322111 256677764321 112
Q ss_pred ----------cCHHHHH-HHHHHHHhcCCceeEEEEeCCC-CCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 181 ----------VTMEALE-AAYEKAQESNIRIKGVLITNPS-NPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 181 ----------~d~~~l~-~~i~~~~~~~~~~~~i~l~~P~-NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+|++.|+ +++++.. ...+++ +++++|+ ||||. +.+.+++++|.++|++||+++|+||+|.++.+.
T Consensus 184 ~~~~~~~~~~~~~~~l~~~~i~~~~-~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~ 261 (419)
T 2eo5_A 184 GYENPSELVNRVIEFIEDYIFVNLV-PPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRT 261 (419)
T ss_dssp TTTCHHHHHHHHHHHHHHTHHHHTC-CGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccccchhhHHHHHHHHHHHHHhhcc-CCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccC
Confidence 4688898 8886410 001444 5667775 67896 678899999999999999999999999876444
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHH-HhhhcCCCChHHHHHHHHhcCCh
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCAR-KMSSFGLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~-~~~~~~~~s~~~q~~~~~~l~~~ 325 (483)
+ .. .+.. ... ...+++ ||||.+| +| +|+||++++++.+ .+. .....+.+++++|.++.++++..
T Consensus 262 g-~~-~~~~-~~~-----~~~d~~---t~sK~~~-~G~~riG~~~~~~~~~--~~~~~~~~t~~~n~~~~~aa~aal~~~ 327 (419)
T 2eo5_A 262 G-KL-FAIE-NFN-----TVPDVI---TLAKALG-GGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVIDIV 327 (419)
T ss_dssp S-SS-SGGG-GGT-----CCCSEE---EECGGGG-TTTSCCEEEEEEGGGC--CC------CCCCCHHHHHHHHHHHHHH
T ss_pred c-ch-hhHH-hcC-----CCCCEE---Eeccccc-CCccceEEEEEchHhh--cCCcccCCCCCCCHHHHHHHHHHHHHH
Confidence 3 21 1221 111 123332 8999999 69 9999999965433 332 22233457889998888887531
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC 405 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~ 405 (483)
+ +..++++++++++.+.|.++ +...++.| +|+|+++.... .... ++..|+ ++||.++|+.
T Consensus 328 ---~----~~~~~~~~~~~~l~~~L~~~-~~~~~~~g-~~~~i~~~~~~-----~~~~-~~~~l~-~~Gv~v~~~~---- 387 (419)
T 2eo5_A 328 ---K----DLLPHVNEIGKIFAEELQGL-ADDVRGIG-LAWGLEYNEKK-----VRDR-IIGESF-KRGLLLLPAG---- 387 (419)
T ss_dssp ---H----HHHHHHHHHHHHHHHHHTTS-SSEEEEET-TEEEEECSCHH-----HHHH-HHHHHH-HTTEECEEET----
T ss_pred ---H----HHHHHHHHHHHHHHHHHHHh-hhheEeee-EEEEEEEecCc-----cHHH-HHHHHH-HCCCEEecCC----
Confidence 2 25677888889999999876 44445554 58888884210 1133 677777 5699999863
Q ss_pred CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 406 PNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 406 ~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++++||+++. .+++++++++++|++++++
T Consensus 388 --~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 388 --RSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 4689998864 5999999999999998865
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=254.61 Aligned_cols=282 Identities=15% Similarity=0.131 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC----------CCeEEEeCCCCcChHHHHhhhcC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP----------GDAFLVPTPYYPGFDRDLRWRTG 165 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~----------gd~Vlv~~P~y~~~~~~~~~~~G 165 (483)
..++++.++++++ ++++++|+|+++++..++.++..+ +|.|+++.|+|+++...+....+
T Consensus 80 ~~~l~~~la~~~g----------~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 149 (392)
T 3ruy_A 80 LGPWYEKVAKLTN----------KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSS 149 (392)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCS
T ss_pred HHHHHHHHHHhcC----------CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccC
Confidence 4566666666543 679999999999999999887644 68999999999776554433312
Q ss_pred c------------EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHH-HHHHHHHHhhcC
Q 011570 166 V------------QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRET-LKDIVSFINEKN 232 (483)
Q Consensus 166 ~------------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~-l~~i~~~a~~~~ 232 (483)
. .+..++. .|+++|+++++ .++++|++++|+||||.+++.++ +++|+++|++||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~ 216 (392)
T 3ruy_A 150 NEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKEN 216 (392)
T ss_dssp CTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTT
T ss_pred ChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1 2333332 27899998886 37999999999999999996555 999999999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh--cCC
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS--FGL 309 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~--~~~ 309 (483)
+++|+||+|.++.+.+ .. .+.. ... ...+++ ||||.++ +| +|+||+++ ++.+.+.+..... .+.
T Consensus 217 ~~li~De~~~~~~~~g-~~-~~~~-~~~-----~~~d~~---~~SK~l~-gG~~~~G~~~~-~~~~~~~~~~~~~~~~~~ 283 (392)
T 3ruy_A 217 VLFVADEIQTGLGRTG-KV-FACD-WDN-----VTPDMY---ILGKALG-GGVFPISCAAA-NRDILGVFEPGSHGSTFG 283 (392)
T ss_dssp CEEEEECTTTTTTTTS-SS-SGGG-GGT-----CCCSEE---EECGGGG-TTTSCCEEEEE-CHHHHTTCCTTSSCCSST
T ss_pred CEEEEeechhCCCccc-cc-hhhh-ccC-----CCCCEE---EEchhhh-CChhhhEEEEE-CHHHHhhhccCCcCCCCC
Confidence 9999999998754444 22 2211 111 112332 7899886 57 99999999 4555544433222 245
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ceeecCCceEEEeeecCchhhccChHHHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG---IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+++++.++.++++.. .. ++.+++++++++++.+.|++++ +....+.++ |+++.++. + ..++.
T Consensus 284 ~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~-~~~~~~~~--~------~~~l~ 349 (392)
T 3ruy_A 284 GNPLACAVSIAALEVL---EE--EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGL-FIGIELNE--P------ARPYC 349 (392)
T ss_dssp TCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT-EEEEEESS--C------SHHHH
T ss_pred CCHHHHHHHHHHHHHH---Hh--hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeee-EEEEEEcc--h------HHHHH
Confidence 6888888888777532 11 4566778888899999998875 455556655 56666764 1 22667
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+.|. ++||.+.||. ++++|++++. .+++++++++++|++++
T Consensus 350 ~~l~-~~gi~v~~~~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 350 EQLK-AAGLLCKETH------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp HHHH-TTTEECCCBT------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCcEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7776 6799999874 5789999755 59999999999999876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=251.67 Aligned_cols=279 Identities=14% Similarity=0.113 Sum_probs=197.4
Q ss_pred CCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcC------------cEEEEeecCCCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTG------------VQLVPVVCDSSND 178 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G------------~~~~~v~~~~~~~ 178 (483)
.++|++|+|+++++..++.+++. +| |.|++++|+|+.+........+ .++..++.
T Consensus 96 ~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 170 (406)
T 4adb_A 96 ADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY----- 170 (406)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----
T ss_pred CCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----
Confidence 45999999999999999998865 66 9999999999988655544422 23334432
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC--CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL--DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
.|+++|++++. .++++|+++ |+||||.++ +.+++++|+++|++||++||+||+|.++.+.+ .. .+..
T Consensus 171 --~d~~~l~~~l~------~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g-~~-~~~~ 239 (406)
T 4adb_A 171 --NDINSASALID------DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTG-EL-YAYM 239 (406)
T ss_dssp --TCHHHHHTTCS------TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SS-SHHH
T ss_pred --CcHHHHHHHhc------CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-hh-HHHH
Confidence 37889988875 278888888 999999998 99999999999999999999999998755544 32 2322
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAE 334 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (483)
.. . ...+++ ||||.++ +|+|+||+++ ++.+.+.+.... ..+..+++++.++.+.+..... ++
T Consensus 240 ~~-~-----~~~d~~---t~sK~~~-~G~r~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-----~~ 303 (406)
T 4adb_A 240 HY-G-----VTPDLL---TTAKALG-GGFPVGALLA-TEECARVMTVGTHGTTYGGNPLASAVAGKVLELINT-----PE 303 (406)
T ss_dssp HH-T-----CCCSEE---EECGGGG-TTSCCEEEEE-CHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSS-----HH
T ss_pred hc-C-----CCCCEE---Eechhhc-CCCCeEEEEE-cHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHh-----cC
Confidence 22 1 123333 7799999 9999999999 566655443322 1244678888887776643211 33
Q ss_pred HHHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCE
Q 011570 335 SAKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGW 410 (483)
Q Consensus 335 ~~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~ 410 (483)
..++++++++++.+.|++.+ .....+..|+++|+.++.... ....++++.|+++ ||.+.|+. +++
T Consensus 304 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~l~~~-gi~v~~~~------~~~ 372 (406)
T 4adb_A 304 MLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYA----GQAKQISQEAAKA-GVMVLIAG------GNV 372 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTT----TCHHHHHHHHHHT-TEECEESS------TTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcH----HHHHHHHHHHHHC-CcEEeecC------CCe
Confidence 44555666666666666542 111222345788998875321 0133677777765 99999863 578
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+|++++. .+++++++++++|++++++..++
T Consensus 373 iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~~ 403 (406)
T 4adb_A 373 VRFAPALNVSEEEVTTGLDRFAAACEHFVSR 403 (406)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 9997654 59999999999999999877543
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=256.53 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC------C-CCeEEEeCCCCcChH-HHHhhhcCcE--
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD------P-GDAFLVPTPYYPGFD-RDLRWRTGVQ-- 167 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~------~-gd~Vlv~~P~y~~~~-~~~~~~~G~~-- 167 (483)
++++++++.+.+.+| +++|++|+|+++++..++.++.. + ++.|++.+|+|+... ..+... |.+
T Consensus 82 ~~~~~l~~~la~~~g------~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~~~ 154 (397)
T 2ord_A 82 RPQMELAELLSKNTF------GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQPKY 154 (397)
T ss_dssp HHHHHHHHHHHHTTT------SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCHHH
T ss_pred HHHHHHHHHHHHhcC------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CChhh
Confidence 444455555444332 57999999999999999988763 5 478999999996543 355543 665
Q ss_pred ----------EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEE
Q 011570 168 ----------LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLV 236 (483)
Q Consensus 168 ----------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI 236 (483)
++.++. .|+++|++++++ ++++|++++|+||||. +++.+++++|+++|+++|+++|
T Consensus 155 ~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li 221 (397)
T 2ord_A 155 QKPFEPLVPGFEYFEF-------NNVEDLRRKMSE------DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLV 221 (397)
T ss_dssp HGGGCSCCTTEEEECT-------TCHHHHHHHCCT------TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEE
T ss_pred ccccCCCCCCeeEecC-------CCHHHHHHHhhc------CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 666664 278999888753 7899999999999999 9999999999999999999999
Q ss_pred EccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHH
Q 011570 237 CDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQT 314 (483)
Q Consensus 237 ~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~ 314 (483)
+||+|.++.+.+ . +.++..+.. . .+++ ||||.++ +|+|+||++++++. . .+.. ....+..++++
T Consensus 222 ~De~~~~~~~~g-~-~~~~~~~~~-----~-~d~~---s~sK~~~-~G~r~G~~~~~~~~-~-~l~~~~~~~~~~~~~~~ 287 (397)
T 2ord_A 222 FDEVQCGMGRTG-K-LFAYQKYGV-----V-PDVL---TTAKGLG-GGVPIGAVIVNERA-N-VLEPGDHGTTFGGNPLA 287 (397)
T ss_dssp EECTTTTTTTTS-S-SSHHHHHTC-----C-CSEE---EECGGGG-TTSCCEEEEECSTT-C-CCCTTSSCCSSTTCHHH
T ss_pred EEecccCCccCc-c-chhhhhhCC-----C-CCee---eeccccC-CCcCeEEEEEchHh-c-ccCCCCcCCCCCCCHHH
Confidence 999998754443 2 233333321 1 2222 8899999 99999999996553 3 3321 11123467888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Ccee---ecCCceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGC---LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~---~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
+.++.++++... + ++.+++++++++++.+.|++. +++. .++. |.|+|++++...+ ..++++.|
T Consensus 288 ~~a~~~~l~~~~---~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~------~~~l~~~l 355 (397)
T 2ord_A 288 CRAGVTVIKELT---K--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGM-GLMIGIQFREEVS------NREVATKC 355 (397)
T ss_dssp HHHHHHHHHHHT---S--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEECTTSC------HHHHHHHH
T ss_pred HHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEE-eEEEEEEECChHH------HHHHHHHH
Confidence 887777664321 1 234556667777777777664 2332 2344 4688888874211 23677777
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
++ +||.+.||. ++++||+++. .+++++++++++|+++++
T Consensus 356 ~~-~gi~v~~~~------~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 356 FE-NKLLVVPAG------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp HH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HH-CCCEEccCC------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 76 699999872 5689999754 599999999999998875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=261.94 Aligned_cols=293 Identities=13% Similarity=0.111 Sum_probs=196.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----CCCC-eEEEeCCCCcChHHHHhhh--cCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----DPGD-AFLVPTPYYPGFDRDLRWR--TGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----~~gd-~Vlv~~P~y~~~~~~~~~~--~G~~~ 168 (483)
..++++.++++++ +++++|++|+|+++++..++.+++ ++|| .|+++.++|+.+...+... .|+++
T Consensus 65 ~~~l~~~la~~~~--------~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~ 136 (400)
T 3vax_A 65 VERAREYLASTVS--------AEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEV 136 (400)
T ss_dssp HHHHHHHHHHHTT--------CCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHcC--------CCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeE
Confidence 3455666666554 567899999999999999999998 8999 9999999999877665542 49999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
+.+++++ ++.+|+++|++++.+ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|+. ..
T Consensus 137 ~~v~~~~--~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~---~~ 202 (400)
T 3vax_A 137 DFLTPGP--SGRISVEGVMERLRP------DTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGY---GK 202 (400)
T ss_dssp EEECCCT--TCCCCHHHHHTTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTT---TT
T ss_pred EEEccCC--CCCcCHHHHHHhcCC------CceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhc---CC
Confidence 9999875 568899999998853 7899999999999999999 78889999999999999999973 21
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEE-ecChHH-------HHHHH-----HhhhcCCCChHHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIY-SYNDQV-------VSCAR-----KMSSFGLVSSQTQ 315 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li-~~~~~l-------~~~~~-----~~~~~~~~s~~~q 315 (483)
.. .+ +. .. ..+++.|+||.+|.+| +|+++ ++++.+ ..... .....+..+...+
T Consensus 203 -~~-~~---~~------~~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (400)
T 3vax_A 203 -VP-GD---LT------TP-IDMISISGHKIGAPKG--VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLI 268 (400)
T ss_dssp -SG-GG---GG------SC-CSEEEEETGGGTSCSS--CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHH
T ss_pred -CC-cC---hh------hc-CcEEEEeHHHhCCCCc--eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHH
Confidence 11 11 11 12 4578899999887666 56666 655211 11110 0011233455666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc---eEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 316 HLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 316 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
.++..++. .+.+++++.+++++++++++.+.|+..|+++..+.+ +.++++.++.. + ..++.+.|.
T Consensus 269 ~a~~~al~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~~L~-- 336 (400)
T 3vax_A 269 MGLAEAAK---IFEAEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFEDV-D------AEAFLVTLK-- 336 (400)
T ss_dssp HHHHHHHH---HHHHSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTTC-C------HHHHHHHHH--
T ss_pred HHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCCC-C------HHHHHHHHh--
Confidence 65555553 223456777888899999999999833888876654 34677777631 1 236667666
Q ss_pred cCeEeeCCCCCCCC-------------C----CCEEEEEe-cc-CCHHHHHHHHHHHHHHHHH
Q 011570 393 VKLNVSPGSSFHCP-------------N----PGWFRVCF-AN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 393 ~gV~v~pg~~f~~~-------------~----~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+||.+++|..|... . ++++||++ +. .+++++++++++|++++++
T Consensus 337 ~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 337 DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 59999998755421 1 47999999 65 4889999999999988753
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-28 Score=247.08 Aligned_cols=280 Identities=18% Similarity=0.145 Sum_probs=193.1
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~ 170 (483)
+..++++.++++++ .+ ++++++++++++..++.+++++||+|+++.|+|+.+...+ ... |.+++.
T Consensus 65 ~~~~l~~~la~~~g--------~~--~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~ 133 (398)
T 2rfv_A 65 TTDALEKKLAVLER--------GE--AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF-GINVRF 133 (398)
T ss_dssp HHHHHHHHHHHHHT--------CS--EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------CC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHc-CCEEEE
Confidence 45677777777764 22 5556666669999999999999999999999999888766 554 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|....+..
T Consensus 134 v~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~-- 195 (398)
T 2rfv_A 134 VDAA-------KPEEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ-- 195 (398)
T ss_dssp ECTT-------SHHHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--
T ss_pred eCCC-------CHHHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 8863 78899888753 7899999999999999998 8889999999999999999998654321
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhh-hc--CCCChHHHHHHHHhcCChh
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMS-SF--GLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~-~~--~~~s~~~q~~~~~~l~~~~ 326 (483)
+ ..+ +.++++.|+||.++.+|+|+ ||++++++.+.+.+.... .+ +..+++.+.++.+.++..
T Consensus 196 ---~-~~~---------~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 261 (398)
T 2rfv_A 196 ---P-LQL---------GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTL- 261 (398)
T ss_dssp ---G-GGG---------TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTH-
T ss_pred ---c-hhh---------CCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhH-
Confidence 1 111 45688999999998899998 999995443332443322 22 356778888887777652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC---------------CceeecC---CceEEEeeecCchhhccChHHHHHHHHH
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQV---------------GIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~---------------gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
..+++ .+.++.+.+.+.|++. ++++..+ ..|.+++++++... +....
T Consensus 262 --~~~~~----~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~ 326 (398)
T 2rfv_A 262 --GIRME----RHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL---------EAGRR 326 (398)
T ss_dssp --HHHHH----HHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH---------HHHHH
T ss_pred --HHHHH----HHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH---------HHHHH
Confidence 22222 2344445555555543 2333322 13446666887420 11223
Q ss_pred HHHhc---CeEeeCCCCCC---------------------CCCCCEEEEEeccC-CHHHHHHHHHHHHH
Q 011570 389 IINEV---KLNVSPGSSFH---------------------CPNPGWFRVCFANM-DDRTMEIALSRITS 432 (483)
Q Consensus 389 Ll~~~---gV~v~pg~~f~---------------------~~~~~~iRis~~~~-~~e~l~~~l~~L~~ 432 (483)
++++. ||.+++|..|. ...++++||+++.. ++++++.++++|++
T Consensus 327 l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 327 MINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 34333 88888886542 01257999999863 56666666666654
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=250.34 Aligned_cols=327 Identities=16% Similarity=0.131 Sum_probs=216.2
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
.+.++.++|+++ ++.+.+++.+. .....|++..+..+|++.++++++ . +..++++
T Consensus 15 ~~~~~~~~~~~g~~p~v~~ai~~~--------------~~~~~~~~~~~~~~l~~~la~~~~--------~--~~~i~~~ 70 (359)
T 3pj0_A 15 YKLGGNGPRNVGVLTEALQNIDDN--------------LESDIYGNGAVIEDFETKIAKILG--------K--QSAVFFP 70 (359)
T ss_dssp EESSSSSCCBHHHHHHHTTTSCTT--------------CBCCBTTBSHHHHHHHHHHHHHHT--------C--SEEEEES
T ss_pred hhhcCCCccccCCCHHHHHHHHhh--------------cccCcccCCHHHHHHHHHHHHHhC--------C--CcEEEeC
Confidence 356677777775 23333333221 112356666678899999999876 1 2235557
Q ss_pred ChhHHHHHHHHHhcCCCCe--EEEeCCCCcChHH--HH-hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 127 GATGAHETVAFCLADPGDA--FLVPTPYYPGFDR--DL-RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~--Vlv~~P~y~~~~~--~~-~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|+++++..++.+++.+||. |+++.++|..+.. .. ... |.+++.++.+ ++.+|+++|+++ . .+++
T Consensus 71 ~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~---~~~~d~~~l~~~-~------~~~~ 139 (359)
T 3pj0_A 71 SGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ-QITPLLLGTA---NQLLTIDDIKSL-R------EPVS 139 (359)
T ss_dssp CHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHH-CCEEEECSCT---TSCCCHHHHHTC-S------SCCS
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhc-CceEEecCCc---CCCcCHHHHHhc-c------CCce
Confidence 8889999999999989887 5555555433221 12 344 9999998863 467999999876 2 3789
Q ss_pred EEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 202 GVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 202 ~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
+|+++|||||| |.+++.+++++|+++|++||++||+|++|....... .. .+...+.. ..+ +++.|+||.+
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~-~~-~~~~~~~~-----~~d--~~~~s~sK~~ 210 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPF-YQ-KSAEEICA-----LFD--SVYVSFYKGI 210 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHH-HT-CCHHHHHT-----TCS--EEEEESSSTT
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhh-hC-CCHHHhhc-----cCC--EEEEeccccC
Confidence 99999999998 799999999999999999999999999986432111 00 12333322 123 3456999998
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhh-cC-CC--ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cc
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSS-FG-LV--SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GI 355 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~-~~-~~--s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi 355 (483)
+.++ . ||+++ ++.+.+.+..... ++ .. ..+.+.++...+ +.+. +..+++.++++++.+.|.++ |+
T Consensus 211 ~~~~-g-g~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l------~~~~-~~~~~~~~~~~~l~~~L~~~~g~ 280 (359)
T 3pj0_A 211 GGIA-G-AILAG-NDDFVQEAKIWKRRYGGDLISLYPYILSADYYF------EKRI-GKMAEYFEAAKGLAERFNSCSGV 280 (359)
T ss_dssp CCSS-C-EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH------HHHG-GGHHHHHHHHHHHHHHHHTSTTE
T ss_pred CCcc-e-EEEEC-CHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH------HHHH-HHhHHHHHHHHHHHHHHhhCCCc
Confidence 7553 3 78887 5666666554322 21 12 222222222222 2222 23344677788899999988 88
Q ss_pred eee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHH
Q 011570 356 GCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN----MDDRTMEIALSRI 430 (483)
Q Consensus 356 ~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~----~~~e~l~~~l~~L 430 (483)
++. .+.+++|+|++++.... .....+.+.|. ++||.++||..|+..+.+++|++++. .+.+++++++++|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~-~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l 355 (359)
T 3pj0_A 281 KTVPEVPVSNMFHVYFENSAD----EIGAILTKIQD-ETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCL 355 (359)
T ss_dssp EEESSSCSSSEEEEEESSCHH----HHHHHHHHHHH-HHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHH
T ss_pred eeeccCCcceEEEEEecCccc----hhHHHHHHHHH-hcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHH
Confidence 885 45666788888864211 11235555555 56999999988876556789999862 4789999999999
Q ss_pred HHH
Q 011570 431 TSF 433 (483)
Q Consensus 431 ~~~ 433 (483)
.+.
T Consensus 356 ~~~ 358 (359)
T 3pj0_A 356 EKE 358 (359)
T ss_dssp HHH
T ss_pred Hhc
Confidence 865
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=249.65 Aligned_cols=297 Identities=15% Similarity=0.127 Sum_probs=204.2
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCC--eEEEeCCCCcChHH---HHhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD--AFLVPTPYYPGFDR---DLRW 162 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd--~Vlv~~P~y~~~~~---~~~~ 162 (483)
..|++..+..+|++.++++++ . +..++++|+++++..++.+++.+|| .|+++.++|..... ....
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~--------~--~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~ 110 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLG--------M--DDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKEL 110 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred ccccCChHHHHHHHHHHHHhC--------C--CcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhc
Confidence 457766788999999999986 1 2335557778899999999999998 67776666543332 2334
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.|+++++++.+ ++.+|+++|+++ .++++|++++||||| |.+++.+++++|+++|++||++||+||+|
T Consensus 111 -~g~~~~~v~~~---~~~~d~~~l~~~--------~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~ 178 (357)
T 3lws_A 111 -HPIETILVGAA---DRLMTLDEIKAL--------PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGAR 178 (357)
T ss_dssp -SSCEEEECSCT---TSCCCHHHHHTC--------CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred -cCcEEEEecCC---CCCcCHHHHhcC--------cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECch
Confidence 48999888843 356999999875 147899999999998 99999999999999999999999999998
Q ss_pred ccCc--cCCCCCcchHHHhhhhccccCCCeEEEEecCcccc-CCCCceEEEEEecChHHHHHHHHhhhc-C-CC--ChHH
Q 011570 242 AATV--FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARKMSSF-G-LV--SSQT 314 (483)
Q Consensus 242 ~~~~--~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~~~~~-~-~~--s~~~ 314 (483)
.... +.+ . +...+.. ..+. ++.|+||.+ |+.| ||+++ ++.+.+.+...... + .. ..+.
T Consensus 179 ~~~~~~~~~-~---~~~~~~~-----~~d~--~~~s~sK~~~~~~g---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 3lws_A 179 LFEMLPYYE-K---TAAEIAG-----LFDS--IYISFYKGLGGIAG---AILAG-PAAFCQTARIWKRRYGGDLISLYPY 243 (357)
T ss_dssp HHHHHHHHT-C---CHHHHHT-----TSSE--EEEESSSTTCCSSC---EEEEE-CHHHHHHHHHHHHHTTCCCSCCHHH
T ss_pred hhhhhhhcC-C---ChHHHHh-----cCCE--EEEeccccCCCCce---EEEEc-CHHHHHHHHHHHHHhcCCcccchHH
Confidence 6211 112 1 2333322 2243 368999999 4344 99998 56666655543322 1 11 2333
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 315 QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 315 q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
+.++...+. .+.+. .+.+.++++++.+.|.++ |+++. .+.+++|+|++++.... ....++.+.|. +
T Consensus 244 ~~~~~~~l~------~~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~-~ 311 (357)
T 3lws_A 244 IVSADYYYE------LRKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA----DISPKLEQVQE-E 311 (357)
T ss_dssp HHHHHHHHH------HHTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH----HHHHHHHHHHH-H
T ss_pred HHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH----HHHHHHHHHHH-h
Confidence 333223322 22222 233567778899999988 88884 56667899999975311 11235555555 5
Q ss_pred cCeEeeCCCCCCCCCCCEEEEEecc----CCHHHHHHHHHHHHHHH
Q 011570 393 VKLNVSPGSSFHCPNPGWFRVCFAN----MDDRTMEIALSRITSFM 434 (483)
Q Consensus 393 ~gV~v~pg~~f~~~~~~~iRis~~~----~~~e~l~~~l~~L~~~l 434 (483)
+||.++||..|. ++.+++|++++. .+++++++++++|++++
T Consensus 312 ~Gi~v~~g~~~~-~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 312 TGLGFVGYLVDK-DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp HCEESCSCCEEC-SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred cCeEEecccccC-CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 699999997665 344589999863 37899999999998764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-29 Score=250.57 Aligned_cols=326 Identities=14% Similarity=0.155 Sum_probs=228.4
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.++|||+.++++++ +.+.+++.+. + ....|++..+..+++++++++++ . ++++++
T Consensus 30 ~~~id~~~~~~~~~-~~v~~a~~~~-------------~-~~~~y~~~~~~~~l~~~la~~~~--------~--~~~v~~ 84 (399)
T 2oga_A 30 VPFLDLKAAYEELR-AETDAAIARV-------------L-DSGRYLLGPELEGFEAEFAAYCE--------T--DHAVGV 84 (399)
T ss_dssp BCSCCHHHHHHHTH-HHHHHHHHHH-------------H-HHTCCSSSHHHHHHHHHHHHHTT--------S--SEEEEE
T ss_pred CcccccCcCCCCCC-HHHHHHHHHH-------------H-hcCCCCCchhHHHHHHHHHHHHC--------C--CeEEEe
Confidence 36789999988776 4444444331 0 01246655678999999999976 1 267778
Q ss_pred CChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 126 GGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 126 ~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
+|+++++..++.++ +++||+|+++.|+|+.+...++.. |.+++.++++++ ++.+|++.|++++.+ ++++|+
T Consensus 85 ~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~ 156 (399)
T 2oga_A 85 NSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSAT-GATPVPVEPHED-HPTLDPLLVEKAITP------RTRALL 156 (399)
T ss_dssp SCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCSS-SSSBCHHHHHHHCCT------TEEEEC
T ss_pred cCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHC-CCEEEEEecCCC-CCCcCHHHHHHhcCC------CCeEEE
Confidence 88899999999999 899999999999999999988876 999999998753 578999999998853 677766
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCcchHHHhhhhccccCCCeEEEEecC--ccccC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSFVSIAEIIDQDIACNRNLIHIVYSL--SKDMG 281 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g 281 (483)
|+||||.+.+ +++|.++|+++|++||+||+|..+. ++. . . +. .. ..+++.|+ ||.+|
T Consensus 157 ---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~---~---~~------~~-~di~~~S~~~sK~~~ 216 (399)
T 2oga_A 157 ---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG-R---R---IG------AG-SSVAAFSFYPGKNLG 216 (399)
T ss_dssp ---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT-E---E---TT------CT-TCEEEEECCTTSSSC
T ss_pred ---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCC-e---e---cc------cc-cCEEEEeCCCCccCC
Confidence 6789999988 7888899999999999999998542 222 1 1 10 11 23678888 79999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhc--------------CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSF--------------GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~ 347 (483)
.+| |+||++++++.+.+.+...... +.++++.+.++.+.+.. +++..++.++.++++.
T Consensus 217 ~~G-~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~ 288 (399)
T 2oga_A 217 CFG-DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYL 288 (399)
T ss_dssp CSS-CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHH
T ss_pred cCC-ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 779 9999999667776665543322 12455555555444433 1223334455667788
Q ss_pred HhhhcC-Cceee-cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC-----------CC--------
Q 011570 348 WGLSQV-GIGCL-KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH-----------CP-------- 406 (483)
Q Consensus 348 ~~L~~~-gi~~~-~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~-----------~~-------- 406 (483)
+.|.++ |+++. .+.++.++|+.++.... +..++.+.|.+ +||.++++.... ..
T Consensus 289 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 362 (399)
T 2oga_A 289 SGLAGLPGIGLPVTAPDTDPVWHLFTVRTE-----RRDELRSHLDA-RGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAE 362 (399)
T ss_dssp HHTTTCTTCBCCCCCTTEECCCSSEEEECS-----SHHHHHHHHHH-TTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHH
T ss_pred HHhccCCCccccCCCCCCcceeEEEEEECC-----CHHHHHHHHHH-CCCceecCCCCccccchhhcccCCCCCCChhHH
Confidence 888877 77664 34556666643332110 12366777764 699998753110 00
Q ss_pred --CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 407 --NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 407 --~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
..+++||+++. .++++++.++++|++++++.+
T Consensus 363 ~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 363 SFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp HHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 02579999965 599999999999999887543
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=253.83 Aligned_cols=294 Identities=14% Similarity=0.097 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--------CCCCeEEEeCCCCcCh------------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--------DPGDAFLVPTPYYPGF------------ 156 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--------~~gd~Vlv~~P~y~~~------------ 156 (483)
.++|+.+|++++ +++++|++|+|+++++..++.+++ ++||+|+++.|+|..+
T Consensus 64 ~~l~~~la~~~g--------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s 135 (432)
T 3a9z_A 64 NTARASLAKMIG--------GKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS 135 (432)
T ss_dssp HHHHHHHHHHHT--------CCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH
T ss_pred HHHHHHHHHHcC--------CCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh
Confidence 588888888876 467899999999999999999886 5899999999999875
Q ss_pred -----HHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc
Q 011570 157 -----DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK 231 (483)
Q Consensus 157 -----~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~ 231 (483)
....+. .|.+++.++++++ ++.+|++.|++++.+ ++++|++++|+||||.+++ +++|.++|+++
T Consensus 136 ~~~~~~~~~~~-~g~~v~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~ 204 (432)
T 3a9z_A 136 IRLPLEHLVED-QVAEVTFVPVSKV-NGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMP---ISEISRRIKAL 204 (432)
T ss_dssp HHHHHHHHHHT-TSCEEEEECCCTT-TSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCcEEEEEecCcc-cCCcCHHHHHHhccC------CceEEEEECcccCcccccC---HHHHHHHHHhc
Confidence 222233 4999999998742 357899999988753 7899999999999999999 56678888888
Q ss_pred C----------cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHH
Q 011570 232 N----------IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCA 301 (483)
Q Consensus 232 ~----------~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~ 301 (483)
+ ++||+||+|+.. . .. .++..+ ...+++.|+||.+| .|+||++++++.....+
T Consensus 205 ~~~~~~~~~~~~~livDea~~~~---~-~~-~~~~~~---------~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~ 267 (432)
T 3a9z_A 205 NQIRAASGLPRVLVHTDAAQALG---K-RR-VDVEDL---------GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPL 267 (432)
T ss_dssp HHHHHHHTCCCCEEEEECTTTTT---T-SC-CCHHHH---------CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCC
T ss_pred CcccccccCCceEEEEEchhhhC---C-cc-cChhhc---------CCCEEEEehhHhcC---CcceEEEEccccccCCc
Confidence 8 999999999742 2 11 233333 12245789999875 46999999654311111
Q ss_pred H---------HhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee--cC-----CceE
Q 011570 302 R---------KMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL--KS-----NAGL 364 (483)
Q Consensus 302 ~---------~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~--~~-----~~g~ 364 (483)
. .....+..+.+.+.++.+++.. +++++++.+++++++++++.+.|+++ |+.+. .+ ..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 344 (432)
T 3a9z_A 268 YPMLFGGGQERNFRPGTENTPMIAGLGKAADL---VSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPN 344 (432)
T ss_dssp CCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTT
T ss_pred CceeecCCccccccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCC
Confidence 1 0111244667777666666542 23456777888899999999999875 65443 22 1223
Q ss_pred EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC------------------CCCEEEEEecc-CCHHHHHH
Q 011570 365 FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP------------------NPGWFRVCFAN-MDDRTMEI 425 (483)
Q Consensus 365 f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~------------------~~~~iRis~~~-~~~e~l~~ 425 (483)
.+++.++... .. ..++...+ .+|.+.+|..|... ..+++||+++. .+++++++
T Consensus 345 ~~~~~~~~~~-~~----~~~~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~ 416 (432)
T 3a9z_A 345 TCNFSIQGSQ-LR----GYMVLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDL 416 (432)
T ss_dssp EEEEEECSTT-CC----HHHHHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHH
T ss_pred EEEEEeCCCC-Cc----HHHHHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHH
Confidence 4555555310 00 11333332 38888887655321 13789999986 38999999
Q ss_pred HHHHHHHHHHHh
Q 011570 426 ALSRITSFMLKN 437 (483)
Q Consensus 426 ~l~~L~~~l~~~ 437 (483)
++++|++++++.
T Consensus 417 ~~~~l~~~~~~~ 428 (432)
T 3a9z_A 417 IVQDLKQAVNQL 428 (432)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-29 Score=253.23 Aligned_cols=285 Identities=16% Similarity=0.118 Sum_probs=198.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcC-hHHHHhhhcCcE-----
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPG-FDRDLRWRTGVQ----- 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~-~~~~~~~~~G~~----- 167 (483)
..++++.++++++ +++++|++|+|+++++..++.++. .+||.|++.+|+|+. +...+... |.+
T Consensus 89 ~~~l~~~la~~~~--------~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~-g~~~~~~~ 159 (395)
T 1vef_A 89 RGEFYRTLTAILP--------PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVT-WEPKYREP 159 (395)
T ss_dssp HHHHHHHHHHTSC--------TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTC-CCHHHHGG
T ss_pred HHHHHHHHHHhcC--------CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhc-CCcccccc
Confidence 4566666666543 467899999999999999998764 578999999999965 44445443 654
Q ss_pred -------EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEcc
Q 011570 168 -------LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 168 -------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~De 239 (483)
+..++. .|+++|++++++ ++++|+++.++||||.++ +.+++++|+++|++||++||+||
T Consensus 160 ~~p~~~~~~~~~~-------~d~~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~De 226 (395)
T 1vef_A 160 FLPLVEPVEFIPY-------NDVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE 226 (395)
T ss_dssp GCSCSSCEEEECT-------TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCCCeeEeCC-------CcHHHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 222221 488999988753 678777655588999865 78889999999999999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChHHHHH
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQTQHL 317 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~~q~~ 317 (483)
+|.++.+.+ .. .++. ... ....++ ||||.++ +|+|+||++++ +.+.+.+.. ....+..+++++.+
T Consensus 227 a~~~~~~~g-~~-~~~~-~~~-----~~~d~~---s~sK~~~-~g~~~G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~a 293 (395)
T 1vef_A 227 IQTGMGRTG-KR-FAFE-HFG-----IVPDIL---TLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAA 293 (395)
T ss_dssp TTTTTTTTS-SS-STHH-HHT-----CCCSEE---EECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHH
T ss_pred cccCCccCC-ch-hHhh-hcC-----CCCCEE---EEccccc-CCCceEEEEeh-HHHHhhhccCCcCCCcCCCHHHHHH
Confidence 998643333 22 1222 211 112332 8899999 59999999995 445544332 11123467777777
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee--ecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC--LKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
+.++++.. .+ ....++++++++++.+.|.+++.++ ..+..|+|+|++++.. ..++.+.|++++||
T Consensus 294 ~~~al~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~l~~~l~~~~gi 360 (395)
T 1vef_A 294 GVAAIRYL---ER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--------AAPYIARLEKEHRV 360 (395)
T ss_dssp HHHHHHHH---HH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--------SHHHHHHHHHHHCE
T ss_pred HHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--------HHHHHHHHHHHCCe
Confidence 76666432 11 2345677788888888888775321 1233457899988741 12677778745699
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
.+.|+ +++++||+++. .+++++++++++|++++
T Consensus 361 ~v~~~------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 361 LALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEecC------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99986 25789999864 59999999999998875
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=245.46 Aligned_cols=298 Identities=16% Similarity=0.190 Sum_probs=215.0
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.|.+..+..++|+++|++++ . .++|++|+| ++++..++.++ +++||+|+++.|+|+.+...+... |++
T Consensus 33 ~~~~~~~~~~l~~~la~~~~--------~-~~~i~~~sG-t~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 101 (388)
T 1b9h_A 33 WRMGGDEVNSFEREFAAHHG--------A-AHALAVTNG-THALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAV 101 (388)
T ss_dssp BTTTCSHHHHHHHHHHHHTT--------C-SEEEEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred eecCCHHHHHHHHHHHHHhC--------C-CeEEEeCCH-HHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 35555678999999999986 1 357777777 89999999999 899999999999999999988876 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-cc
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VF 246 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~ 246 (483)
++.++++++ +|.+|++.|++++++ ++++|+ |+||||.+.+ +++|.++|+++|++||+||+|+.. .+
T Consensus 102 ~~~v~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~~~~~~li~D~a~~~g~~~ 168 (388)
T 1b9h_A 102 TVPVDVDAA-TYNLDPEAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARW 168 (388)
T ss_dssp EEEECBCTT-TCCBCHHHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEE
T ss_pred EEEEecCCC-cCCCCHHHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHHHcCCEEEEecchhcCCcc
Confidence 999998753 578999999998853 677666 9999999987 788888899999999999999853 22
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH--HHHHHHhhhc--------------CC-
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV--VSCARKMSSF--------------GL- 309 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l--~~~~~~~~~~--------------~~- 309 (483)
.+ .++.. .+ ++++.||||..+++|.|+||++++++.+ .+.+...... +.
T Consensus 169 ~~----~~~~~---------~~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (388)
T 1b9h_A 169 QG----KRVGE---------LD-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSN 234 (388)
T ss_dssp TT----EEGGG---------SS-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCB
T ss_pred CC----eeccc---------cc-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeeccccc
Confidence 22 12111 12 4678899977777788999999966545 4444332221 11
Q ss_pred --CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec------CCceEEEeeecCchhhccChH
Q 011570 310 --VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK------SNAGLFLWMDLHHLLKEQTYE 380 (483)
Q Consensus 310 --~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~------~~~g~f~~~~l~~~~~~~~~~ 380 (483)
.+.+...++...+ +++++..++++++++++.+.|.++ |+.+.. +.+++++|++++.... .
T Consensus 235 ~~~~~~~~a~~~~~~-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 303 (388)
T 1b9h_A 235 MRLNEFSASVLRAQL-------ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----E 303 (388)
T ss_dssp CBCBHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----H
T ss_pred CCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCc----c
Confidence 2222222221211 224555667778889999999887 787764 3567899999975210 1
Q ss_pred HHHHHHHHHHHhcCeEeeCCCCCCC----------CC-----------------CCEEEEEecc-C-CHHHHHHHHHHHH
Q 011570 381 AEMALWRVIINEVKLNVSPGSSFHC----------PN-----------------PGWFRVCFAN-M-DDRTMEIALSRIT 431 (483)
Q Consensus 381 ~~~~~~~~Ll~~~gV~v~pg~~f~~----------~~-----------------~~~iRis~~~-~-~~e~l~~~l~~L~ 431 (483)
+..++.+.|.+ +||.++++..... .. .+.+||++.. . ++++++.+++.|+
T Consensus 304 ~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~ 382 (388)
T 1b9h_A 304 RRNALVDRLVE-AGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA 382 (388)
T ss_dssp HHHHHHHHHHH-TTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-CCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence 23367777775 6999988743110 00 1359999965 6 8999999999999
Q ss_pred HHHHH
Q 011570 432 SFMLK 436 (483)
Q Consensus 432 ~~l~~ 436 (483)
+++++
T Consensus 383 ~~~~~ 387 (388)
T 1b9h_A 383 DAVAR 387 (388)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88764
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=244.71 Aligned_cols=288 Identities=9% Similarity=0.065 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC-hHHHHhhhcCcEEEEeecCC
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG-FDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~-~~~~~~~~~G~~~~~v~~~~ 175 (483)
.++.+.+.+++.+.+| . .++++|++|+|+++++..++.++.++ +.+++..|.|.. +...++.. |++++.++.+.
T Consensus 42 ~~~~~~~~~~la~~~g--~-~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~ 116 (362)
T 3ffr_A 42 EEVYKTASDNLKTLLE--L-PSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFSKRFYEFAGEL-GREAYKEEAAF 116 (362)
T ss_dssp HHHHHHHHHHHHHHTT--C-CTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHHHHHHHHHHHT-TCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHhC--C-CCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHHHHHHHHHHHh-CCCeEEEecCC
Confidence 3555555555555544 2 14678999999999999999999988 556666666763 23345554 99999999864
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc-CcEEEEccccccCccCCCCCcch
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK-NIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~-~~~iI~Deay~~~~~~~~~~~~s 254 (483)
++.+|+++|+ + ++++++|++++|+||||.+++ +++|.++|++| |+++|+|++|... . .+ ..
T Consensus 117 --~~~~d~~~l~--~------~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~---~-~~-~~ 178 (362)
T 3ffr_A 117 --GKGFYPADIT--V------PADAEIICLTHNETSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLP---Y-PK-FD 178 (362)
T ss_dssp --TCCCCGGGCC--C------CTTCCEEEEESEETTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTT---S-SC-CC
T ss_pred --CCCCCHHHHh--c------cCCccEEEEEcCCCCcceeCC---HHHHHHHHHhCCCCEEEEecccccC---C-cc-cC
Confidence 5678999988 3 248999999999999999999 77788999999 9999999999742 1 11 11
Q ss_pred HHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhh-----------------------cCCC
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSS-----------------------FGLV 310 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~-----------------------~~~~ 310 (483)
+ . ...+++.|+||.++ ++|+ |+++++ +.+.+.+..... .+..
T Consensus 179 ---~-------~-~~d~~~~s~~K~~~~~~G~--g~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (362)
T 3ffr_A 179 ---W-------T-KIDSVFFSVQKCFGLPAGL--GVWILN-DRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETP 244 (362)
T ss_dssp ---T-------T-SCSEEEEETTSTTCCCSCC--EEEEEE-HHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCC
T ss_pred ---h-------h-HCcEEEEecccccCCCCce--EEEEEC-HHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCc
Confidence 1 0 13477899999998 7884 677774 445444443322 3445
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC----CceEEEeeecCchhhccChHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS----NAGLFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~----~~g~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
+...+.++..++.... ...+++.+++++++++++.+.|+++ |+++..+ .++.++|+.++. + ..++
T Consensus 245 ~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~------~~~~ 314 (362)
T 3ffr_A 245 NAMNIFLLGKVTGDML--QISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTM--L------PGEI 314 (362)
T ss_dssp CHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESS--C------HHHH
T ss_pred hHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCC--C------HHHH
Confidence 6666666655554211 1124667778888999999999998 8887652 245678888875 1 2367
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
.+.|.++ ||.+++|..+ ..++++||+++. .+++++++++++|++++
T Consensus 315 ~~~l~~~-gi~~~~g~~~--~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 315 NKILEPF-DMAVGAGYGS--KKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHGGG-TEEEEECSGG--GTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHC-CeEEecCccc--cCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 7777765 9999998544 346799999975 58999999999998764
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=248.98 Aligned_cols=321 Identities=15% Similarity=0.221 Sum_probs=218.9
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC----CCCe---EEEeCCCCcChHHHHh
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD----PGDA---FLVPTPYYPGFDRDLR 161 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~----~gd~---Vlv~~P~y~~~~~~~~ 161 (483)
.|++..+..+|+++++++++ .++|++|+|+++++..++.++++ +||. |+++.+.|..+...+.
T Consensus 71 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~ 140 (467)
T 1ax4_A 71 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 140 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHcC----------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHh
Confidence 57766788999999999985 26999999999999999999988 9998 9999777777777777
Q ss_pred hhcCcEEEEeecCC----C----CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcC
Q 011570 162 WRTGVQLVPVVCDS----S----NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 162 ~~~G~~~~~v~~~~----~----~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~ 232 (483)
.. |.+++.++.+. . .++.+|+++|++++++.. ..++++|++++||||| |.+++.+++++|+++|++||
T Consensus 141 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~g 217 (467)
T 1ax4_A 141 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 217 (467)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred cc-CCceecccccccccccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcC
Confidence 65 99988776532 1 134689999999997531 1268999999999999 89999999999999999999
Q ss_pred cEEEEcccccc--C--------ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecCh-HHHHH
Q 011570 233 IHLVCDEIYAA--T--------VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYND-QVVSC 300 (483)
Q Consensus 233 ~~iI~Deay~~--~--------~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~-~l~~~ 300 (483)
++||+||++.. . .+.+ .++.++..++. ...+ +++.|+||.+|++ | ||++++++ .+.+.
T Consensus 218 i~li~De~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~ 287 (467)
T 1ax4_A 218 IFVVMDSARFCENAYFIKARDPKYKN----ATIKEVIFDMY-KYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTL 287 (467)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTT----CCHHHHHHHHG-GGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHH
T ss_pred CEEEEEchhhhhcchhccccccccCC----Cchhhhhhhhc-cccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHH
Confidence 99999998642 0 1222 23333321000 0123 4568999999876 5 78877635 55554
Q ss_pred HHHhhh-------cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch
Q 011570 301 ARKMSS-------FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL 373 (483)
Q Consensus 301 ~~~~~~-------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~ 373 (483)
+..... ++..+.....+++..+..... .+.++ ...++++++.+.|.+.|+++..+.+|+++|+++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~----~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 362 (467)
T 1ax4_A 288 ARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE-EEYLH----YRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKL 362 (467)
T ss_dssp HHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC-HHHHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTT
T ss_pred HHhhccccccccccCCccchHHHHHHHHHHHhhh-hhHHH----HHHHHHHHHHHHHHhCCCCcccCCCceEEEEehhhh
Confidence 433221 122233333322222221000 01122 223556778888877788887788899999993221
Q ss_pred ---hhccChHHHHHHHHHHHHhcCeEeeC-CCCC-CC---------CCCCEEEEEec-c-CCHHHHHHHHHHHHHHHHHh
Q 011570 374 ---LKEQTYEAEMALWRVIINEVKLNVSP-GSSF-HC---------PNPGWFRVCFA-N-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 374 ---~~~~~~~~~~~~~~~Ll~~~gV~v~p-g~~f-~~---------~~~~~iRis~~-~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
...... ...+++..|++++||.+.| |+.| +. ...+++||+++ . .+++++++++++|++++++.
T Consensus 363 ~~~~~~~~~-~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 363 VPQIPGDQF-PAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp CTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred ccccccCCC-CHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 000011 2347888886677999999 6532 11 01378999997 3 58999999999999998875
Q ss_pred h
Q 011570 438 V 438 (483)
Q Consensus 438 ~ 438 (483)
+
T Consensus 442 ~ 442 (467)
T 1ax4_A 442 A 442 (467)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=252.65 Aligned_cols=349 Identities=14% Similarity=0.063 Sum_probs=216.8
Q ss_pred CCCcccccchhh--hh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-
Q 011570 45 PNGVIQMGLAEN--LL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP- 119 (483)
Q Consensus 45 ~~~~i~l~~~~n--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~- 119 (483)
...++|++.+.+ ++ .++.+.+++.+. +.....|+...|..++++++++++.+.++ ...
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~~~ 104 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAA-------------AANPAGATILSASNAPAVTLAERLLASFP----GEGT 104 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHH-------------HHSCSCSCSSSSEEHHHHHHHHHHHHTTT----CTTT
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 456788887765 23 234444544331 11123354445677888888888887654 344
Q ss_pred CcEEEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEE--------------EEeecCCCCCccc--
Q 011570 120 DRIVMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQL--------------VPVVCDSSNDFKV-- 181 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~--------------~~v~~~~~~~~~~-- 181 (483)
++|++|+|+++++..++.++ ..+++.|++.+|+|+++........|... ..++.+. .+..
T Consensus 105 ~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 182 (439)
T 3dxv_A 105 HKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPT 182 (439)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBTT
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--cccccc
Confidence 79999999999999999875 33667899999998665544433323221 2223221 1111
Q ss_pred ---CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHH
Q 011570 182 ---TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAE 257 (483)
Q Consensus 182 ---d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~ 257 (483)
|+++|++++++ ....++++|++++++|++|.+.+ .+.+++|.++|++||+++|+||+|.++...+ .. ... .
T Consensus 183 ~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g-~~-~~~-~ 257 (439)
T 3dxv_A 183 GDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RL-HCF-E 257 (439)
T ss_dssp SHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTS-SS-SGG-G
T ss_pred HHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCc-hh-hHH-H
Confidence 68999998841 11236777777777888888664 5559999999999999999999998743333 21 121 1
Q ss_pred hhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--hhcCCCChHHHHHHHHhcCChhHHHHHHHHH
Q 011570 258 IIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--SSFGLVSSQTQHLIATMLSDDQFVEKFIAES 335 (483)
Q Consensus 258 l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~ 335 (483)
... ...+++ ||||++| +|+|+||+++ ++.+.+.+... ...+ .+++++.++.+++..... +..
T Consensus 258 ~~~-----~~~di~---s~sK~~~-~G~riG~~~~-~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~~-----~~~ 321 (439)
T 3dxv_A 258 HEG-----FVPDIL---VLGKGLG-GGLPLSAVIA-PAEILDCASAFAMQTLH-GNPISAAAGLAVLETIDR-----DDL 321 (439)
T ss_dssp GTT-----CCCSEE---EECGGGG-TTSCCEEEEE-EHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHHH-----TTH
T ss_pred hcC-----CCCCEE---EEcchhc-CCcceEEEEE-CHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHHh-----cCH
Confidence 111 112222 9999999 7999999999 45555544332 1224 678888877776653211 112
Q ss_pred HHHHHHHHHHHHHhhh----cCC-ceeecCCceEEEeeecCchhh--ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 336 AKRIAERHKAFTWGLS----QVG-IGCLKSNAGLFLWMDLHHLLK--EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~----~~g-i~~~~~~~g~f~~~~l~~~~~--~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
.++++++++++.+.|. ..+ +...++. |.|+|+++..... ........++++.++++ ||.+.|+..+ .
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~----~ 395 (439)
T 3dxv_A 322 PAMAERKGRLLRDGLSELAKRHPLIGDIRGR-GLACGMELVCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN----G 395 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT----S
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC----C
Confidence 2233333344444333 333 3444444 4588887732100 00112234677788765 9999998532 4
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 409 GWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 409 ~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+++||+++. .+++++++++++|++++++..+
T Consensus 396 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 427 (439)
T 3dxv_A 396 NVLEFTPPLTITETDIHKALDLLDRAFSELSA 427 (439)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 789999765 4999999999999999987643
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=243.37 Aligned_cols=346 Identities=12% Similarity=0.045 Sum_probs=219.4
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
+.++|..++|++++ .+.+++.+.... .....+.....|+......++++.+.+.+.+.+| +++++|++|+
T Consensus 26 ~~i~l~~~~~~~~~-~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g----~~~~~i~~~s 95 (417)
T 3n0l_A 26 EGLEMIASENFTLP-EVMEVMGSILTN-----KYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN----CKFANVQPNS 95 (417)
T ss_dssp HSEECCTTCCCCCH-HHHHHHTBGGGG-----CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCCSS
T ss_pred cCeeeecccCCCCH-HHHHHHhhhhhc-----cccccCCCccccccchHHHHHHHHHHHHHHHHhC----CCCcceEecc
Confidence 35788888887644 444544432100 0000011112233333345666655555555555 4667898888
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhhh-cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRWR-TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~~-~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
| ++++..++.+++++||+|+++.|+|..+.. .+... .+..+++++.+ .++.+|+++|++++.+. ++++
T Consensus 96 G-t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~-----~~~~ 167 (417)
T 3n0l_A 96 G-SQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKE-----KPKL 167 (417)
T ss_dssp H-HHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHH-----CCSE
T ss_pred H-HHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhc-----CCeE
Confidence 8 799999999999999999999999987644 22222 24556666665 46789999999999742 7889
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc-cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA-ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~-~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
|++++|+| |.+++ +++|.++|++||++||+||+|. +..+.+ .....+ ....+++.|+||.+
T Consensus 168 v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~~~~~-----------~~~di~~~s~sK~l- 229 (417)
T 3n0l_A 168 IVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAG-EHPSPF-----------PYAHVVSSTTHKTL- 229 (417)
T ss_dssp EEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCCT-----------TTCSEEEEESSTTT-
T ss_pred EEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcc-cCCCcc-----------ccceEEEeeCcccc-
Confidence 99888887 88888 8889999999999999999963 322332 211111 12347889999987
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhcC---CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSFG---LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~ 358 (483)
+|+|.||++++++.+.+.+......+ ..+...+.++...+.. .....+++.++++.++++++.+.|.+.|+++.
T Consensus 230 -~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 306 (417)
T 3n0l_A 230 -RGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKF--NLSDEWKVYAKQVRTNAQVLANVLMDRKFKLV 306 (417)
T ss_dssp -CSCSCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred -CCCCeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHhCCceec
Confidence 78899999996567777665543332 2233343343333321 11223466677788888999999988888776
Q ss_pred c-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC----CCCEEEEEecc-----CCHHHHHHHHH
Q 011570 359 K-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP----NPGWFRVCFAN-----MDDRTMEIALS 428 (483)
Q Consensus 359 ~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~----~~~~iRis~~~-----~~~e~l~~~l~ 428 (483)
. +..+.++|++++.... .. .....+++++||.+.++..+... .++.+|+++.. .++++++++++
T Consensus 307 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~ 380 (417)
T 3n0l_A 307 SDGTDNHLVLMSFLDREF-----SG-KDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSN 380 (417)
T ss_dssp GGSCSSSEEEEECTTSSS-----CH-HHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCceEEEEEcccCCC-----CH-HHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHH
Confidence 5 2345688888863210 11 23344556789999876543321 23569999853 35799999999
Q ss_pred HHHHHHHHh
Q 011570 429 RITSFMLKN 437 (483)
Q Consensus 429 ~L~~~l~~~ 437 (483)
+|++++++.
T Consensus 381 ~l~~~l~~~ 389 (417)
T 3n0l_A 381 YIADILDDV 389 (417)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 999999765
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=248.47 Aligned_cols=353 Identities=10% Similarity=0.039 Sum_probs=220.0
Q ss_pred CCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||++.+. +.++ ++.+.+++.+... .. .+....+..++++++++++.+.++ .+.+
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-------------~~-~~~~~~~~~~~~~~la~~l~~~~~----~~~~ 109 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQ-------------TL-SYFPMSQSHEPAIKLAEKLNEWLG----GEYV 109 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHT-------------TC-CCCCTTSEEHHHHHHHHHHHHHHT----SCEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHH-------------hc-CCcccccCCHHHHHHHHHHHHhCC----CCce
Confidence 45678998873 4443 3555555543111 11 111223456677777777776654 3344
Q ss_pred cEEEeCChhHHHHHHHHHhc-----C---CCCeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCCCCCcc
Q 011570 121 RIVMSGGATGAHETVAFCLA-----D---PGDAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDSSNDFK 180 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~-----~---~gd~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~~~~~~ 180 (483)
|++|+|+++++..++.++. . ++|.|++.+|+|+++........|. .+..++......+.
T Consensus 110 -v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (452)
T 3n5m_A 110 -IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMP 188 (452)
T ss_dssp -EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTST
T ss_pred -EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCc
Confidence 9999999999999998887 5 7899999999998776544433121 13333321111111
Q ss_pred c-C---------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 181 V-T---------MEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 181 ~-d---------~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
. | +++|++++++. ...++++|+++.+ +| ||.++ +.+++++|.++|++||+++|+||+|.++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~le~~l~~~--~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g 265 (452)
T 3n5m_A 189 GIERENIYDVECVKEVDRVMTWE--LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG 265 (452)
T ss_dssp TTTTSCGGGCHHHHHHHHHHHHH--CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred cCCchhhHHHHHHHHHHHHHHhc--CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCccc
Confidence 1 1 88999988721 1136777777777 89 99766 88889999999999999999999998854444
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH---hh-----hcCCCChHHHHHHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK---MS-----SFGLVSSQTQHLIA 319 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~---~~-----~~~~~s~~~q~~~~ 319 (483)
.. ...... . .... +.||||+++ .| +|+||+++ ++.+.+.+.. .. ..+..+++++.++.
T Consensus 266 -~~-~~~~~~-~-----~~~d---i~t~sK~l~-~G~~~ig~~~~-~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~ 332 (452)
T 3n5m_A 266 -KA-FGFMNY-D-----VKPD---IITMAKGIT-SAYLPLSATAV-KREIYEAFKGKGEYEFFRHINTFGGNPAACALAL 332 (452)
T ss_dssp -SS-SGGGGT-T-----CCCS---EEEECGGGG-TTSSCCEEEEE-EHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHH
T ss_pred -cc-chhhhc-C-----CCCC---EEeeccccc-CCCcceEEEEE-CHHHHHHHhhccCCCCccccCCCCCCHHHHHHHH
Confidence 22 121111 1 1122 337999998 59 99999999 5666665522 11 22446788888887
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhcc-C--hHHHHHHHHHHHHhcCe
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQ-T--YEAEMALWRVIINEVKL 395 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~-~--~~~~~~~~~~Ll~~~gV 395 (483)
++|+.... ++..++.++.....++.+.+.+.++ .+....+.| .|+++++....... . .....+++..+++ +||
T Consensus 333 aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv 409 (452)
T 3n5m_A 333 KNLEIIEN-ENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKG-LLVGIELVNDKETKEPIDNDKIASVVNACKE-KGL 409 (452)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESS-SCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTE
T ss_pred HHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCc
Confidence 77653211 1122333223333333344444444 344455555 57777774321110 0 0112356777775 599
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
.+.|+..|....++++||+++. .+++++++++++|+++++
T Consensus 410 ~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 410 IIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME 450 (452)
T ss_dssp ECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 9999987765567899998765 599999999999999875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=244.29 Aligned_cols=331 Identities=12% Similarity=0.075 Sum_probs=214.2
Q ss_pred CCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...++|++.+ .++++ ++.+.+++.+... .. .|....+..++++++++++.+..+ ++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-------------~~-~~~~~~~~~~~~~~l~~~la~~~~------~~ 94 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVD-------------KL-LHTSNLYYNENIAAAAKNLAKASA------LE 94 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHT-------------TC-SCCCTTSBCHHHHHHHHHHHHHHT------CS
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHH-------------hc-cccccccCCHHHHHHHHHHHHhcC------CC
Confidence 4567899988 45553 3555555443111 01 111112335666667776665543 58
Q ss_pred cEEEeCChhHHHHHHHHHhc-------CCCCeEEEeCCCCcChHHHHhhhc------------CcEEEEeecCCCCCccc
Q 011570 121 RIVMSGGATGAHETVAFCLA-------DPGDAFLVPTPYYPGFDRDLRWRT------------GVQLVPVVCDSSNDFKV 181 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~-------~~gd~Vlv~~P~y~~~~~~~~~~~------------G~~~~~v~~~~~~~~~~ 181 (483)
+|++|+|+++++..++.++. .++|.|++.+|+|+++........ +.++..++. .
T Consensus 95 ~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 167 (395)
T 3nx3_A 95 RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------N 167 (395)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------T
T ss_pred eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------C
Confidence 99999999999999998775 457999999999987654433221 134444442 2
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhh
Q 011570 182 TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIID 260 (483)
Q Consensus 182 d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~ 260 (483)
|+++|++++++ ++++|++..++|++|.+ ++.+++++|.++|++||+++|+||+|.++...+ .. ......
T Consensus 168 d~~~l~~~l~~------~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g-~~-~~~~~~-- 237 (395)
T 3nx3_A 168 DISSVEKLVNE------KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSG-KF-FAYEHA-- 237 (395)
T ss_dssp CHHHHHTTCCT------TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SS-SGGGGG--
T ss_pred CHHHHHHhccC------CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCC-cc-hhHHhc--
Confidence 78899888753 67888887777777776 688889999999999999999999998754333 21 222111
Q ss_pred hccccCCCeEEEEecCccccCCCCceEEEEEecChHH-HHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHH
Q 011570 261 QDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-VSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAK 337 (483)
Q Consensus 261 ~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l-~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (483)
+....+.||||.++ +|+|+||++++ +.+ .+.+.... ..+..+++++.++.++++.... +++.++.++
T Consensus 238 -------~~~~d~~t~sK~~~-~G~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~-~~~~~~~~~ 307 (395)
T 3nx3_A 238 -------QILPDIMTSAKALG-CGLSVGAFVIN-QKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKE-EKILENVNK 307 (395)
T ss_dssp -------TCCCSEEEECGGGT-TTSCCEEEEEC-HHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred -------CCCCCEEEeccccc-CCCceEEEEEc-hhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 11112348999998 69999999994 555 55543321 2244788888887777652110 122333333
Q ss_pred HHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec
Q 011570 338 RIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA 416 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~ 416 (483)
.....++.+.+.+.+++ +...++. |+|+|++++.... ..++++.|++ +||.++|+. ++++||+++
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~------~~~~~~~l~~-~Gi~v~~~~------~~~iRi~~~ 373 (395)
T 3nx3_A 308 LTPYLEQSLDELINEFDFCKKRKGL-GFMQGLSLDKSVK------VAKVIQKCQE-NALLLISCG------ENDLRFLPP 373 (395)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEECTTSC------HHHHHHHHHH-TTEECEEET------TTEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeE-EEEEEEEeCCcch------HHHHHHHHHH-CCCEEecCC------CCEEEEECC
Confidence 33333344444444443 3334444 4688898875211 2367777765 599999863 578999976
Q ss_pred c-CCHHHHHHHHHHHHHHHHH
Q 011570 417 N-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 417 ~-~~~e~l~~~l~~L~~~l~~ 436 (483)
. .+++++++++++|++++++
T Consensus 374 ~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 374 LILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 5 4999999999999998863
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=246.16 Aligned_cols=310 Identities=13% Similarity=0.130 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhh------------
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWR------------ 163 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~------------ 163 (483)
+++.++++.+.+.++ .++++|++|+|+++++..++.++. ..+|.|++.+|+|+++.......
T Consensus 85 ~~~~~l~~~la~~~~----~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (433)
T 1zod_A 85 RPVVDLATRLANITP----PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA 160 (433)
T ss_dssp HHHHHHHHHHHHHSC----TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCC
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCC
Confidence 445555555554443 467899999999999999998653 23589999999997654432211
Q ss_pred -cCcEEEEeecCCCCCc--------ccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcC
Q 011570 164 -TGVQLVPVVCDSSNDF--------KVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKN 232 (483)
Q Consensus 164 -~G~~~~~v~~~~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~ 232 (483)
.|+..++++......| .+|++.|++++++. ...+++ +++++| +||||. +.+.+++++|.++|++||
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~-~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 161 AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQ--SSGNLA-AFIAEPILSSGGIIELPDGYMAALKRKCEARG 237 (433)
T ss_dssp CTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHH--CCSCEE-EEEECSEETTTTCEECCTTHHHHHHHHHHHHT
T ss_pred CCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhc--CCCCeE-EEEEccccCCCCcccCCHHHHHHHHHHHHHhC
Confidence 1444444442211122 24689999988742 112455 455677 588996 678999999999999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh----hcC
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS----SFG 308 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~----~~~ 308 (483)
++||+||+|.++.+.+ .. ...... . .... +.||||.+| +|+|+||+++ ++.+.+.+.... ..+
T Consensus 238 ~~li~DEv~~~~g~~g-~~-~~~~~~-~-----~~~d---i~s~sK~~~-~G~~ig~~~~-~~~~~~~~~~~~~~~~~t~ 304 (433)
T 1zod_A 238 MLLILDEAQTGVGRTG-TM-FACQRD-G-----VTPD---ILTLSKTLG-AGLPLAAIVT-SAAIEERAHELGYLFYTTH 304 (433)
T ss_dssp CEEEEECTTTTTTTTS-SS-STHHHH-T-----CCCS---EEEECHHHH-TTSSCEEEEE-CHHHHHHHHHTTCCCCCTT
T ss_pred CEEEEeccccCCCcCc-hH-hHHhhc-C-----CCCC---EEEeccccc-CCCCeeEEEE-hHHHHHhhccCCCCCCCCC
Confidence 9999999999754433 21 222212 1 1122 238999999 5999999999 456666665421 223
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc----CC-ceeecCCceEEEeeecCchhhc--cChHH
Q 011570 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ----VG-IGCLKSNAGLFLWMDLHHLLKE--QTYEA 381 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~g-i~~~~~~~g~f~~~~l~~~~~~--~~~~~ 381 (483)
..+++++.++.++++... + ....++++++++++.+.|++ .+ +...++. |.|+|++++..... .....
T Consensus 305 ~~~~~~~~a~~aal~~~~---~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~ 378 (433)
T 1zod_A 305 VSDPLPAAVGLRVLDVVQ---R--DGLVARANVMGDRLRRGLLDLMERFDCIGDVRGR-GLLLGVEIVKDRRTKEPADGL 378 (433)
T ss_dssp TTCHHHHHHHHHHHHHHH---H--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEEEETTTTEECTTH
T ss_pred CcCHHHHHHHHHHHHHHH---h--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEE-EEEEEEEEecCccccCCChHH
Confidence 467888887776664211 0 11223344444555554543 22 3334444 45888988642100 00012
Q ss_pred HHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 382 EMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 382 ~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++++.++ ++||.+.||..|+ .++++||+++. .+++++++++++|++++++
T Consensus 379 ~~~~~~~l~-~~Gv~v~~~~~~~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 379 GAKITRECM-NLGLSMNIVQLPG--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHH-HTTEECCEECCTT--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCeEeccCCCC--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 346778777 5699999998764 35799998764 5999999999999998865
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=245.37 Aligned_cols=295 Identities=13% Similarity=0.083 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---C----CCCeEEEeCCCCcChHHHHhhhc-----
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---D----PGDAFLVPTPYYPGFDRDLRWRT----- 164 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~----~gd~Vlv~~P~y~~~~~~~~~~~----- 164 (483)
.++++.++++++ +++++|++|+|+++++..++.++. + |||+|++.+|+|+++........
T Consensus 89 ~~l~~~la~~~~--------~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~ 160 (429)
T 1s0a_A 89 IELCRKLVAMTP--------QPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNS 160 (429)
T ss_dssp HHHHHHHHHHSC--------TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTT
T ss_pred HHHHHHHHHhCC--------CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchh
Confidence 556666666543 468999999999999999988653 2 68999999999987644332111
Q ss_pred ----------CcEEEEeecCC-CCCc-ccCHHHHHHHHHHHHhcCCceeEEEEeCC--CCCCcC-CCCHHHHHHHHHHHh
Q 011570 165 ----------GVQLVPVVCDS-SNDF-KVTMEALEAAYEKAQESNIRIKGVLITNP--SNPLGT-FLDRETLKDIVSFIN 229 (483)
Q Consensus 165 ----------G~~~~~v~~~~-~~~~-~~d~~~l~~~i~~~~~~~~~~~~i~l~~P--~NPtG~-~~~~~~l~~i~~~a~ 229 (483)
++..++++... ++.| .+|++.|++++++. ..++++ ++++| |||||. +.+.+++++|+++|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~-vi~~p~~~n~tG~~~~~~~~l~~i~~l~~ 236 (429)
T 1s0a_A 161 MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAH---RHEIAA-VIIEPIVQGAGGMRMYHPEWLKRIRKICD 236 (429)
T ss_dssp TGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEE-EEECSSEECTTTCEEBCTHHHHHHHHHHH
T ss_pred hcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhC---CCCEEE-EEEeecccCCCCcccCCHHHHHHHHHHHH
Confidence 23444443211 1234 48999999998742 124554 55666 589996 557888999999999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh----
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM---- 304 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~---- 304 (483)
+||+++|+||+|.++.+.+ .. .++... . ...++ .||||.++ +| +|+||+++ ++.+.+.+...
T Consensus 237 ~~~~~li~De~~~~~g~~g-~~-~~~~~~-~-----~~~d~---~t~sK~l~-~G~~~iG~~~~-~~~~~~~l~~~~~~~ 303 (429)
T 1s0a_A 237 REGILLIADEIATGFGRTG-KL-FACEHA-E-----IAPDI---LCLGKALT-GGTMTLSATLT-TREVAETISNGEAGC 303 (429)
T ss_dssp HHTCEEEEECTTTTTTTTS-SS-SGGGGG-T-----CCCSE---EEECGGGG-TSSSCCEEEEE-CHHHHHHHHTSTTSS
T ss_pred HcCCEEEEeehhhCCcccc-hH-HHhhhc-C-----CCCCE---EEeccccc-CCCccceEEEe-CHHHHHHhhcCCCcc
Confidence 9999999999998753333 21 122111 1 11233 27999998 79 99999999 45666655442
Q ss_pred --h-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhcc
Q 011570 305 --S-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 305 --~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~ 377 (483)
. ..+..+++++.++.++++.. .+ ....++++++++++.+.|.++ ++....+.| .|+|++++...+
T Consensus 304 ~~~~~t~~~n~~~~~a~~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~~-- 375 (429)
T 1s0a_A 304 FMHGPTFMGNPLACAAANASLAIL---ES--GDWQQQVADIEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPVN-- 375 (429)
T ss_dssp CSCCCTTTTCHHHHHHHHHHHHHH---HT--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCBC--
T ss_pred cccCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCccc--
Confidence 1 12346788888777776421 10 122344556667777777664 344444554 589998875211
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++...|+ ++||.++|+ .+++||+++. .+++++++++++|++++++
T Consensus 376 ----~~~l~~~l~-~~Gi~v~~~-------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 376 ----MAALQKFFV-EQGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ----HHHHHHHHH-HTTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred ----HHHHHHHHH-HCCCEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 236777777 569999873 2589999764 5999999999999988754
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=242.67 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=185.9
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC---hHHHHhhhcCc--EEEEeecCCCCCcccCHHHHHHHHHHHHhcC
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPG---FDRDLRWRTGV--QLVPVVCDSSNDFKVTMEALEAAYEKAQESN 197 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~---~~~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~ 197 (483)
++++|+++++..++.+++++||+|+++.|+|+. +....... |. ++++++.++ +++.+|++.|++++.+.
T Consensus 98 v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~---- 171 (425)
T 3ecd_A 98 VQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALS-GKWFNALQYGVSR-DTMLIDYDQVEALAQQH---- 171 (425)
T ss_dssp CCCSSHHHHHHHHHHHHCCTTCEEEEECC-------------------CEEEEECCCT-TTSSCCHHHHHHHHHHH----
T ss_pred eecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhc-ccceeeeecCCCc-ccCccCHHHHHHHHhhc----
Confidence 458888899999999999999999999999987 22222122 44 555666553 35789999999999742
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-ccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
++++|++++|+||+ ..+ +++|.++|++||++||+||+|... .+.+ .. .+... ...+++.|+
T Consensus 172 -~~~~v~~~~~~~~~--~~~---l~~i~~l~~~~~~~li~De~~~~g~~~~~-~~-~~~~~----------~~di~~~s~ 233 (425)
T 3ecd_A 172 -KPSLIIAGFSAYPR--KLD---FARFRAIADSVGAKLMVDMAHIAGVIAAG-RH-ANPVE----------HAHVVTSTT 233 (425)
T ss_dssp -CCSEEEEECSCCCS--CCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SS-CCGGG----------TCSEEEEES
T ss_pred -CCcEEEEccccCCC--cCC---HHHHHHHHHHcCCEEEEECcChHhhhhcc-cc-cCchh----------cCcEEEecC
Confidence 68999999999974 344 789999999999999999995432 2332 22 22111 122778999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHhhhcC---CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG---LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~---~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
||.+ +|+|+||++++++.+.+.+......+ ..+...+.++...+.. ...+++++.+++++++++++.+.|.+.
T Consensus 234 sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~ 309 (425)
T 3ecd_A 234 HKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGE--ALTDDFKTYIDRVLANAQALGDVLKAG 309 (425)
T ss_dssp SGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHH--HTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Cccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987 67899999997666766655433221 2333333333323211 112335666777888889999999988
Q ss_pred CceeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee----CCCCCCCCCCCEEEEEecc-----CCHHHH
Q 011570 354 GIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS----PGSSFHCPNPGWFRVCFAN-----MDDRTM 423 (483)
Q Consensus 354 gi~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pg~~f~~~~~~~iRis~~~-----~~~e~l 423 (483)
|+++..+ .+++++|+.++.... .. +.....++++||.++ ||..+....++++|+++.. .+++++
T Consensus 310 g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 310 GVDLVTGGTDNHLLLVDLRPKGL-----KG-AQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred CCeeccCCCCceEEEEEeCCCCC-----CH-HHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 9888754 467789998864211 11 233444567799999 5433333335689999643 248999
Q ss_pred HHHHHHHHHHHHHh
Q 011570 424 EIALSRITSFMLKN 437 (483)
Q Consensus 424 ~~~l~~L~~~l~~~ 437 (483)
++++++|++++++.
T Consensus 384 ~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 384 REVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999876
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=246.67 Aligned_cols=292 Identities=15% Similarity=0.111 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcCcE-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTGVQ- 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G~~- 167 (483)
.++++++++.+.+..| +++|++|+|+++++..++.++.. +| +.|++++|+|+++...+....|.+
T Consensus 98 ~~~~~~l~~~la~~~g------~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~ 171 (420)
T 2pb2_A 98 NEPALRLGRKLIDATF------AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPK 171 (420)
T ss_dssp CHHHHHHHHHHHHHSS------CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHH
T ss_pred CHHHHHHHHHHHhhCC------CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCcc
Confidence 4556666666655433 57999999999999999998865 67 599999999977644332222543
Q ss_pred -----------EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEE
Q 011570 168 -----------LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHL 235 (483)
Q Consensus 168 -----------~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~i 235 (483)
+..++. .|+++|++++.+ ++++|++++|+|++|. +++.+++++|.++|++||+++
T Consensus 172 ~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~l 238 (420)
T 2pb2_A 172 YSDGFGPKPADIIHVPF-------NDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALL 238 (420)
T ss_dssp HHTTSSSCCSCEEEECT-------TCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEE
T ss_pred ccccCCCCCCCeEEecC-------CCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEE
Confidence 444442 278999988753 7888888888888884 699999999999999999999
Q ss_pred EEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhcCCCChH
Q 011570 236 VCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSFGLVSSQ 313 (483)
Q Consensus 236 I~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~~~~s~~ 313 (483)
|+||+|.++.+.+ .. .+.... . ...+++ ||||.+| +|+|+||++++ +.+.+.+.. ....+..+++
T Consensus 239 I~Dev~~g~~~~g-~~-~~~~~~-~-----~~~dii---t~sK~l~-~G~~iG~~~~~-~~l~~~l~~~~~~~t~~~~~~ 305 (420)
T 2pb2_A 239 VFDEVQCGMGRTG-DL-FAYMHY-G-----VTPDIL---TSAKALG-GGFPVSAMLTT-QEIASAFHVGSHGSTYGGNPL 305 (420)
T ss_dssp EEECTTTTTTTTS-SS-SHHHHH-T-----CCCSEE---EECGGGG-TTSCCEEEEEC-HHHHTTCC----CCEECCCHH
T ss_pred EEEcCCcCcccCC-cH-HHHHhc-C-----CCCCeE---Eeccccc-CCCceEEEEEh-HHHHHhhcCCCcCcccCcCHH
Confidence 9999998754443 22 222222 1 123333 7899999 99999999995 555544332 1122346888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--C---ceeecCCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 314 TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--G---IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 314 ~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--g---i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
++.++.++|+.... ++..++++++++++.+.|+++ + +....+. |+|+|++++.... ....++.+.
T Consensus 306 ~~aa~~a~L~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~v~~~~~~~----~~~~~l~~~ 375 (420)
T 2pb2_A 306 ACAVAGAAFDIINT-----PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGM-GLLIGAELKPKYK----GRARDFLYA 375 (420)
T ss_dssp HHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE-TTEEEEEECGGGT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-ceEEEEEECCCch----HHHHHHHHH
Confidence 88877666543111 223445556666666666553 2 2223444 4688888874210 013367777
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
|++ +||.+.|+. ++++||+++. .+++++++++++|++++++.
T Consensus 376 l~~-~Gi~v~~~~------~~~iRl~~~~~~t~eei~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 376 GAE-AGVMVLNAG------ADVMRFAPSLVVEEADIHEGMQRFAQAVGKV 418 (420)
T ss_dssp HHH-TTEECEESS------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEEeCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 775 699999873 5689999764 59999999999999988754
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=247.04 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=205.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhh
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWR 163 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~ 163 (483)
..|+ ..|.+ +++++++++.+.+| .+++++++|+++++..++. ++++||+|+++.|+|+.+...+ +.
T Consensus 125 ~~Y~-~~g~~-~~~~l~~~la~~~g------~~~~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~- 194 (464)
T 1ibj_A 125 YDYT-RSGNP-TRDALESLLAKLDK------ADRAFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPR- 194 (464)
T ss_dssp CSBT-TTCCH-HHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGG-
T ss_pred cccc-CCCCH-HHHHHHHHHHHHhC------CCeEEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHH-
Confidence 4576 34555 78888888888766 3477888888999998875 7899999999999999887643 33
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|++++.++.+ |+++|++++. +++++|++++|+||||.+++ +++|+++|+++|+++|+||+|..
T Consensus 195 ~G~~v~~v~~~-------d~~~l~~~i~------~~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~ 258 (464)
T 1ibj_A 195 SGVVVKRVNTT-------KLDEVAAAIG------PQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMS 258 (464)
T ss_dssp GTCEEEEECTT-------SHHHHHHHCC------SSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTC
T ss_pred cCCEEEEeCCC-------CHHHHHHHhc------cCceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcc
Confidence 49999998863 7889988875 37999999999999999997 88999999999999999999964
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~ 320 (483)
... +.++ ..++++++.|+||.++. +|+|+||++++++.+.+.+..... .+.++++.|.++.+
T Consensus 259 g~~-----~~~~----------~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~ 323 (464)
T 1ibj_A 259 PVL-----SRPL----------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLR 323 (464)
T ss_dssp TTT-----CCGG----------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred ccc-----CChh----------hcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 211 1111 12567889999999864 489999999966667666655442 23467888888777
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHH----------HhhhcC-CceeecCC---ceEEEeeecCchhhccChHHHHHHH
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFT----------WGLSQV-GIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~----------~~L~~~-gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+..... ..++.........+++. +.|.++ ++++..++ .|.+++++++. . .....+.
T Consensus 324 al~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~-~-----~~~~~~~ 394 (464)
T 1ibj_A 324 GIKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS-V-----ALSKHLV 394 (464)
T ss_dssp HHTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC-H-----HHHHHHH
T ss_pred chhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC-H-----HHHHHHH
Confidence 7765321 11211111222222222 233333 45555443 24578888852 1 1122455
Q ss_pred HHHHHhcCeEeeCCC------------CCCC---------CCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGS------------SFHC---------PNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~------------~f~~---------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+.|. ..||.+++|. .+.. ..++++||+++. |++++++++|++++++
T Consensus 395 ~~L~-~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 395 ETTK-YFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI---EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHCS-SSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS---SCHHHHHHHHHHHHHS
T ss_pred HhcC-cceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHhh
Confidence 5543 4689998885 1221 125789999983 8899999999998864
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=245.79 Aligned_cols=328 Identities=14% Similarity=0.164 Sum_probs=223.5
Q ss_pred cccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCC-CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 50 QMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQD-YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 50 ~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
+|+.++|+++ ++.+.+++.+. + ....|++ ..+..+||++++++++ .++|++|+|
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~-------------~-~~~~y~~~~~~~~~l~~~la~~~~----------~~~v~~~~g 75 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRA-------------L-DSQWLSNGGPLVREFEERVAGLAG----------VRHAVATCN 75 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHH-------------H-HHTCCSSSCHHHHHHHHHHHHHHT----------SSEEEEESC
T ss_pred cccccCCCCCChHHHHHHHHHH-------------H-hcCCcccCCHHHHHHHHHHHHHhC----------CCeEEEeCC
Confidence 6788888776 34444444331 0 0124776 6678999999999986 258999999
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN 207 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~ 207 (483)
+++++..++.++. +||+|+++.|+|+.+...+... |.+++.+++++ .+|.+|++.|++++.+ ++++|++++
T Consensus 76 gt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~ 146 (424)
T 2po3_A 76 ATAGLQLLAHAAG-LTGEVIMPSMTFAATPHALRWI-GLTPVFADIDP-DTGNLDPDQVAAAVTP------RTSAVVGVH 146 (424)
T ss_dssp HHHHHHHHHHHHT-CCSEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTSSBCHHHHGGGCCT------TEEEEEEEC
T ss_pred HHHHHHHHHHHcC-CCCEEEECCCccHHHHHHHHHc-CCEEEEEecCC-CcCCcCHHHHHHhhCc------CCcEEEEEC
Confidence 9999999999985 7899999999999999888876 99999999875 3678999999988753 688888864
Q ss_pred CCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc-cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCce
Q 011570 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA-ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR 286 (483)
Q Consensus 208 P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~-~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR 286 (483)
|||.+.+ +++|+++|+++|++||+||+|. ++.+++ . ++.. ... +++.||||..+++|+|
T Consensus 147 ---~tG~~~~---l~~i~~la~~~~~~li~Dea~~~g~~~~~-~---~~~~---------~~d-i~~~S~sk~K~l~~~~ 206 (424)
T 2po3_A 147 ---LWGRPCA---ADQLRKVADEHGLRLYFDAAHALGCAVDG-R---PAGS---------LGD-AEVFSFHATKAVNAFE 206 (424)
T ss_dssp ---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT-E---ETTS---------SSS-EEEEECCTTSSSCCSS
T ss_pred ---CCCCcCC---HHHHHHHHHHcCCEEEEECccccCCeECC-e---eccc---------ccC-EEEEeCCCCCCccCCC
Confidence 8999866 8888999999999999999998 344433 2 1111 122 7889999666777899
Q ss_pred EEEEEecChHHHHHHHHhhhcCC-----C-----C-hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-C
Q 011570 287 VGIIYSYNDQVVSCARKMSSFGL-----V-----S-SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-G 354 (483)
Q Consensus 287 iG~li~~~~~l~~~~~~~~~~~~-----~-----s-~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-g 354 (483)
+||++++++.+.+.+......+. . + .+.+.+++..+... +.+++..++.++.++++.+.|.++ |
T Consensus 207 ~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~----~~~~~~~~~~~~~~~~l~~~L~~~~g 282 (424)
T 2po3_A 207 GGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSL----DAFPEVIDRNRRNHAAYREHLADLPG 282 (424)
T ss_dssp CEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCSCTT
T ss_pred CeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 99999964666666554332210 0 0 11222222222111 224455566677778888999887 8
Q ss_pred ceeec-CCce----EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--------------CCCE-----
Q 011570 355 IGCLK-SNAG----LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--------------NPGW----- 410 (483)
Q Consensus 355 i~~~~-~~~g----~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--------------~~~~----- 410 (483)
+++.. +.++ ++++++++...... ...++.+.|. ++||.+++. |... .+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~L~-~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~ 356 (424)
T 2po3_A 283 VLVADHDRHGLNNHQYVIVEIDEATTGI---HRDLVMEVLK-AEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAA 356 (424)
T ss_dssp EEECCGGGGSCCCCCCEEEEECHHHHSS---CHHHHHHHHH-HTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHT
T ss_pred ccccCCCCCCccccEEEEEEECCccchh---hHHHHHHHHH-HCCCceecc--cCCccccchhhhhcCCCCChhHHHHhc
Confidence 88765 4443 23446665310000 1225566554 679999872 2210 0122
Q ss_pred --EEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 411 --FRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 411 --iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+|+++.. .+++++++++++|++++++..+.
T Consensus 357 ~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 357 RVLSLPTGTAIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp TEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 6666433 69999999999999998776543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=240.76 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=210.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
+..+..++++++|++++ .+++++|+|+++++..++.++ +++||+|+++.|+|+.+...++.. |.+++.
T Consensus 37 ~~~~~~~l~~~la~~~~----------~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~~ 105 (393)
T 1mdo_A 37 TGPKNQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANPVM 105 (393)
T ss_dssp SSHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEE
T ss_pred CChHHHHHHHHHHHHhC----------CCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHC-CCEEEE
Confidence 34578999999999986 248999999999999999999 899999999999999999888875 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-ccCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VFTKE 249 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~~~~ 249 (483)
++++++ ++.+|++.|++++.+ ++++|+++ ||||.+.+ +++|.++|+++|++||+||+|+.. .+..
T Consensus 106 v~~~~~-~~~~d~~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~- 171 (393)
T 1mdo_A 106 VDVDRD-TLMVTPEHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYKG- 171 (393)
T ss_dssp ECBCTT-TCCBCHHHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT-
T ss_pred EeccCC-cCCCCHHHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHHHcCCeEEEECccccCCeECC-
Confidence 998753 578999999998853 68888776 48999987 888889999999999999999853 2322
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcC---------------------
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG--------------------- 308 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~--------------------- 308 (483)
. + + . . +++++.||||..+++|.|+||++++++.+.+.+......+
T Consensus 172 ~---~---~-~-----~--~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (393)
T 1mdo_A 172 R---H---I-G-----A--RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLA 237 (393)
T ss_dssp E---E---T-T-----S--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESS
T ss_pred e---e---c-C-----C--CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccc
Confidence 1 1 1 0 1 5678899994444456699999996566666655432211
Q ss_pred -----CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec-C-----CceEEEeeecCchhhcc
Q 011570 309 -----LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK-S-----NAGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 309 -----~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~-~-----~~g~f~~~~l~~~~~~~ 377 (483)
..+++...++...+.. +++..++.++.++++.+.|.+.++++.. + .+++++|++++......
T Consensus 238 ~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 310 (393)
T 1mdo_A 238 PGYKYNLPDLNAAIALAQLQK-------LDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGI 310 (393)
T ss_dssp CCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSS
T ss_pred cCccCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEeccccccc
Confidence 1233332222222221 2334444556778888889887766542 2 45568899987310000
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCC--------------CC-----CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFH--------------CP-----NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~--------------~~-----~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
...++.+.|.+ +||.+++|..+. .+ ..+++||+++. .++++++.++++|+++++..
T Consensus 311 ---~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 311 ---TRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp ---CHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ---CHHHHHHHHHh-CCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 12366777765 699999986541 00 13479999975 59999999999999887553
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=244.80 Aligned_cols=356 Identities=9% Similarity=-0.022 Sum_probs=225.9
Q ss_pred CCCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
+...+||++.+ .++++ ++.+.+++.+.. .. ....|....+..++++++++++.+..+ .+.
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~----------~~--~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 112 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQA----------KN--LAYYHAYVGHGTEASITLAKMIIDRAP----KGM 112 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHH----------HH--HSCCCCCTTCCCHHHHHHHHHHHHHSC----TTE
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHH----------Hh--ccccccccccCCHHHHHHHHHHHhhCC----CCc
Confidence 34567898877 34443 344555443310 00 011233334456777888888776543 467
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--------CCCeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCC--C-
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDS--S- 176 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~--~- 176 (483)
++|++|+|+++++..++.++.. +++.|++.+|+|+++........|. .+..++... .
T Consensus 113 ~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (460)
T 3gju_A 113 SRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRR 192 (460)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccC
Confidence 8999999999999999988863 5699999999998766544332111 233344221 0
Q ss_pred CCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 177 NDFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 177 ~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+++..+ +++|++++.+.. ..++++|++..++|++|. +++.+.+++|.++|++||+++|+||+|.++...
T Consensus 193 ~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~ 270 (460)
T 3gju_A 193 TDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL 270 (460)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred CccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc
Confidence 111233 578888886421 125666665555777777 778888999999999999999999999975444
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh---------hhcCCCChHHHHH
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM---------SSFGLVSSQTQHL 317 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~---------~~~~~~s~~~q~~ 317 (483)
+ .. ...... . .... +.||||+++ +| +|+||+++ ++.+.+.+... ...+..+++++.+
T Consensus 271 g-~~-~~~~~~-~-----~~pd---i~t~sK~l~-gG~~~lg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 337 (460)
T 3gju_A 271 G-TM-FGSDHY-G-----IKPD---LITIAKGLT-SAYAPLSGVIV-ADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAA 337 (460)
T ss_dssp S-SS-CHHHHH-T-----CCCS---EEEECGGGT-TTSSCCEEEEE-EHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHH
T ss_pred c-cc-chHhhc-C-----CCCC---eeeeehhhc-CCCCCeEEEEE-CHHHHHHHhcccccccccccCCCCCCCHHHHHH
Confidence 3 22 222222 1 1122 237899997 56 89999999 56666665421 1224568888888
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhcc-----ChHHHHHHHHHHHH
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQ-----TYEAEMALWRVIIN 391 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~-----~~~~~~~~~~~Ll~ 391 (483)
+.++|+.... ++++++.++.....++.+.+.+.+++ +....+.| .|+++++....... ......+++..+++
T Consensus 338 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 415 (460)
T 3gju_A 338 GVANLELIDE-MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDG-MLAAVEFVADKDDRVFFDASQKIGPQVATALAA 415 (460)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeee-EEEEEEEccCccccccccchHHHHHHHHHHHHH
Confidence 8877763211 22344555555555666767776664 44455554 57778776421100 00113356777775
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+||.++|+. ..+++||+++. .+++++++++++|++++++..
T Consensus 416 -~Gv~v~~~~-----~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 416 -SGVIGRAMP-----QGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp -TTEECEECS-----SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEecCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599999875 24789999754 599999999999999998653
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=252.05 Aligned_cols=310 Identities=13% Similarity=0.139 Sum_probs=225.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE--EEeCChhHHHHHHHHHhcCCC--------CeEEEeCCCCcChHHH
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI--VMSGGATGAHETVAFCLADPG--------DAFLVPTPYYPGFDRD 159 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i--~it~G~~~al~~~~~~l~~~g--------d~Vlv~~P~y~~~~~~ 159 (483)
|..+.+..++++++++++.+.+| .+.+++++ ++|+|+++++..++.++.++| |+|+++.|+|..+...
T Consensus 131 ~~~~p~~~~le~~l~~~la~~~g--~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~ 208 (514)
T 3mad_A 131 PDLWPSTAKFEAEVVAMTAHMLG--GDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA 208 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTT--GGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHcC--CCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH
Confidence 44444567888889888888877 33344788 999999999999999998776 9999999999999999
Q ss_pred HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 160 LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 160 ~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
++.. |.+++.+++++ ++.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|++||+++|+||
T Consensus 209 ~~~~-G~~v~~v~~~~--~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 209 AQYF-GIKLVRTPLDA--DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHH-TCEEEEECBCT--TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHc-CCeeEEeeeCC--CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 9886 99999999875 678999999999864 7899999999999999999 7888999999999999999
Q ss_pred ccccCccC--C--CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh---------
Q 011570 240 IYAATVFT--K--ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--------- 306 (483)
Q Consensus 240 ay~~~~~~--~--~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--------- 306 (483)
+|+++.+. . ......+... ..+..+++.|++|.++ +|.++|++++.++.+.........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~~-------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDFR-------LEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLYFS 348 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCSTT-------STTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSEEE
T ss_pred ccccccchhHHhcCCCCCccccc-------CCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcccC
Confidence 99876431 0 0100111101 2245677889999864 788999999976654432100000
Q ss_pred ---cCCCChH---HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhccCh
Q 011570 307 ---FGLVSSQ---TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 307 ---~~~~s~~---~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~ 379 (483)
.+..+.. ++.++...+. ...+++..+++.++++++.+.|++. |+++..+..+ ++|+..+.. +
T Consensus 349 ~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~-~---- 417 (514)
T 3mad_A 349 PTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL-N---- 417 (514)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS-C----
T ss_pred CccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC-C----
Confidence 0111222 2222322222 2235666777888889999999987 8888766655 777766421 1
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
..++.+.|.+ +||.+ +|..| ++++|++++. .+++++++++++|++++++.++.
T Consensus 418 --~~~l~~~L~~-~Gi~v-~g~~~----~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 418 --IYQVMEEMAG-RGWRL-NGLHR----PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp --HHHHHHHHHT-TTCBC-EEETT----TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHh-cCCEe-ccCCC----CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 2367777765 59987 55433 4679999974 36799999999999999887654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=249.75 Aligned_cols=303 Identities=14% Similarity=0.134 Sum_probs=218.6
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCC-----eEEEeCCCCcChHHHHhhh
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGD-----AFLVPTPYYPGFDRDLRWR 163 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd-----~Vlv~~P~y~~~~~~~~~~ 163 (483)
..|..++++++++++.+.+| .+. .+++|+|+++++..++.++ .++|| +|+++.|+|+.+...+...
T Consensus 102 ~~g~~~l~~~l~~~la~~~g----~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~ 176 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTG----MDA-ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA 176 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHC----CCc-eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC
Confidence 45677899999999988877 222 4778899999998755554 46887 9999999999999888875
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|++++.+++++ ++.+|+++|++++.+ ++++|++++| ||||.+. +++++|+++|+++|+++|+||+|..
T Consensus 177 -G~~vv~v~~~~--~~~~d~~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~ 244 (474)
T 1wyu_B 177 -GYQVREIPSGP--EGEVDLEALKRELGP------HVAALMLTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLN 244 (474)
T ss_dssp -TCEEEEECBCT--TSSBCHHHHHHHCST------TEEEEEECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGG
T ss_pred -CCEEEEecCCC--CCCcCHHHHHHhhCC------CceEEEEECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhh
Confidence 99999999864 578999999998853 7899999998 6899983 3489999999999999999999976
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC-C---ceEEEEEecChHHHHHHHH-h--------------
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-G---FRVGIIYSYNDQVVSCARK-M-------------- 304 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-G---lRiG~li~~~~~l~~~~~~-~-------------- 304 (483)
..++. .+...+ +.++++.|+||+|+.| | +|+||++++++ +.+.+.. .
T Consensus 245 ~~~g~----~~~~~~---------g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~-l~~~l~~~~~~~~g~~~~~~~~~ 310 (474)
T 1wyu_B 245 AIMGW----ARPGDM---------GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAH-LAPYLPVPLVERGEEGFYLDFDR 310 (474)
T ss_dssp GTTTT----CCHHHH---------TCSEEECCTTTTTCCCCTTSCCCCCCEEECGG-GGGGCCSCEEEECSSCEEEECCC
T ss_pred hhccC----CCcccC---------CCcEEEEeCccccccCCCCCCCCeEEEEEcHH-HHHhCCCCeeeccCCeeEecccC
Confidence 54321 122222 3457788999999766 4 69999999544 4333220 0
Q ss_pred ----h--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE-EeeecCchhhcc
Q 011570 305 ----S--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF-LWMDLHHLLKEQ 377 (483)
Q Consensus 305 ----~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f-~~~~l~~~~~~~ 377 (483)
. ..+..+..++.++..++...+ .+.+++..+++.++++++.+.|.+.|+++..+...+. +|++++...
T Consensus 311 ~~~~~~~~~~~~~~~~~~aa~~~l~~~g--~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--- 385 (474)
T 1wyu_B 311 PKSIGRVRSFYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGF--- 385 (474)
T ss_dssp TTCCCCSSSTTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTC---
T ss_pred cccCcccccCcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCC---
Confidence 0 001245566666666654322 3446677788889999999999888887633332221 566663211
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
...++++.|+++ ||.+ |+..|.....+++||+++. .+++++++++++|++++++
T Consensus 386 ---~~~~l~~~L~~~-Gi~~-~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 386 ---RALDLAKGLLEL-GFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ---CHHHHHHHHHHT-TCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ---CHHHHHHHHHHC-Cccc-cccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 134778888865 9985 6666643346789999985 3899999999999998765
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=248.98 Aligned_cols=359 Identities=12% Similarity=0.072 Sum_probs=217.5
Q ss_pred CCCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
....+||+..+ .+.++ ++.+.+++.+. +.....|....+..+++.++++++.+..+. -..
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~ 125 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQ-------------ATHFTHTCFMVTPYEQYVQVAELLNALTPG---DHD 125 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHH-------------HHHCSCCTTTTSCCHHHHHHHHHHHHHSSC---SSC
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHH-------------HHhccccccCcCCCHHHHHHHHHHHHhCCC---CCC
Confidence 34568899887 44443 44455544331 111223444445567777888877766431 125
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCc-------------EEEEeecC--CCCCcccC
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGV-------------QLVPVVCD--SSNDFKVT 182 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~-------------~~~~v~~~--~~~~~~~d 182 (483)
++|++|+|+++++..++..+.. .++.|++.+|+|+++........+. .+..++.+ ..+.+..+
T Consensus 126 ~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 205 (453)
T 4ffc_A 126 KRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLT 205 (453)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCC
T ss_pred cEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccc
Confidence 7999999999999999977642 4589999999998766554433111 33444433 11122233
Q ss_pred -HHHHHHHHHHHHhc-CCceeEEEEeCCCCCCc--CCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHh
Q 011570 183 -MEALEAAYEKAQES-NIRIKGVLITNPSNPLG--TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEI 258 (483)
Q Consensus 183 -~~~l~~~i~~~~~~-~~~~~~i~l~~P~NPtG--~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l 258 (483)
.+.++..++...+. +++..++++++|+||+| .+.+.+.+++|.++|++||+++|+||+|.++.+.+ . +......
T Consensus 206 ~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g-~-~~a~~~~ 283 (453)
T 4ffc_A 206 GEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-A-WFASEHE 283 (453)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS-S-SSTHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCccc-c-cchhhhc
Confidence 23333222221110 12445678888988877 44588889999999999999999999998754443 2 2222222
Q ss_pred hhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHH
Q 011570 259 IDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (483)
. .... +.||||+++ +|+|+||+++ ++.+.+.+.... ..+..++++|.++.++|+.... +++.++.+
T Consensus 284 -~-----~~pd---i~t~sK~~~-~G~~~G~~~~-~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~ 351 (453)
T 4ffc_A 284 -G-----IVPD---IVTMAKGIA-GGMPLSAVTG-RAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE-LDLPARAR 351 (453)
T ss_dssp -T-----CCCS---EEEECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred -C-----CCcc---hHhhhhhhc-CCcCeEEEEE-CHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh-hhHHHHHH
Confidence 1 1112 347999998 5999999999 566655443222 2245788898888777753211 11222222
Q ss_pred HHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchh-hccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE
Q 011570 337 KRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLL-KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVC 414 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis 414 (483)
+.....++.+.+.+.+++ +....+. |+|+|+++.... ..........++..+++ +||.+.|+..| .+++||+
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~----~~~iRi~ 425 (453)
T 4ffc_A 352 AIEASVTSRLSALAEEVDIIGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF----GNVIRLL 425 (453)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT----SCEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC----CCEEEEE
Confidence 222333333444444443 3333444 568888874310 00111223467777775 59999998654 3589999
Q ss_pred ecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 415 FAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 415 ~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++. .+++++++++++|++++++..
T Consensus 426 ~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 426 PPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 876 599999999999999998753
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=243.95 Aligned_cols=301 Identities=13% Similarity=0.090 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH---HHHhhh-cCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD---RDLRWR-TGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~---~~~~~~-~G~~~~~v~ 172 (483)
..+++...+++.+.+| +++++|++++| ++++..++.+++++||+|+++.|+|+.+. ...... .+...++++
T Consensus 75 ~~~~~~~~~~la~~~~----~~~~~v~~~sG-s~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 149 (420)
T 3gbx_A 75 DVVEQLAIDRAKELFG----ADYANVQPHSG-SQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYG 149 (420)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CCCceeEecCc-HHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEecc
Confidence 4445444455555555 46677777777 78999999999999999999999998743 111111 145666666
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+ .++.+|+++|++++++. ++++|++++|+||+ ..+ +++|.++|++||++||+||+|....+.. ..+
T Consensus 150 ~~--~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~-~~~ 216 (420)
T 3gbx_A 150 ID--ESGKIDYDEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAA-GVY 216 (420)
T ss_dssp EC--TTCSCCHHHHHHHHHHH-----CCSEEEECCTTCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHT-TSS
T ss_pred CC--ccCCcCHHHHHHHHHhc-----CCeEEEEecCccCC--ccC---HHHHHHHHHHcCCEEEEECCcchhceec-ccC
Confidence 65 45689999999999762 58999999999974 556 8899999999999999999985432222 111
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecC--hHHHHHHHHhhhc---CCCChHHHHHHHHhcCChhH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN--DQVVSCARKMSSF---GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~--~~l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~ 327 (483)
.... ....+++.|+||+++ |.+.||+++++ +.+.+.+...... +..+...+.+++..+.. .
T Consensus 217 ~~~~----------~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~--~ 282 (420)
T 3gbx_A 217 PNPV----------PHAHVVTTTTHKTLA--GPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE--A 282 (420)
T ss_dssp CCST----------TTSSEEEEESSGGGC--SCSCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHH--T
T ss_pred Cccc----------ccCCEEEeecccCCC--CCCceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH--H
Confidence 1111 123478899999984 55569999965 3566555443222 22333333333322211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC-------
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP------- 399 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p------- 399 (483)
..+++++.++++.++++++.+.|.+.|+++..+ ..++++|+.++.... .. +....+++++||.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~l~~~gi~v~~~~~~~~~ 356 (420)
T 3gbx_A 283 MEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNL-----TG-KEADAALGRANITVNKNSVPNDP 356 (420)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC-----CH-HHHHHHHHHTTEECEEECCTTCS
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCCCC-----CH-HHHHHHHHHCCcEeccccCCCCc
Confidence 122356677788888899999998889887653 456788988864211 11 3344445677999998
Q ss_pred CCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHHHhh
Q 011570 400 GSSFHCPNPGWFRVCFAN-----MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|..|+ +..+||+++. .+++++++++++|++++++..
T Consensus 357 ~~~~~---~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 357 KSPFV---TSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNIN 397 (420)
T ss_dssp SCTTT---CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cccCC---CcceEEecchhcccCCCHHHHHHHHHHHHHHHhCcc
Confidence 43333 3459999964 247999999999999987753
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=238.76 Aligned_cols=351 Identities=9% Similarity=0.001 Sum_probs=221.1
Q ss_pred CCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccc-cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIA-IFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
...+||++.+ .+.++ ++.+.+++.+.. .... .|+...+..++++++++++.+.++ .+.
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~ 111 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQM-------------EELPFYNTFFKTTHPAVVELSSLLAEVTP----AGF 111 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCTTSSSCCHHHHHHHHHHHHHSC----TTC
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 4567898877 44443 344555443310 1111 233334456778888888877654 467
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--------CCCeEEEeCCCCcChHHHHhhhc--------------CcEEEEeecCCC-
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDRDLRWRT--------------GVQLVPVVCDSS- 176 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~~--------------G~~~~~v~~~~~- 176 (483)
++|++|+|+++++..++.++.. +++.|++.+|+|+++........ +...+++|....
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 191 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKH 191 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccC
Confidence 8999999999999999998875 57999999999988765544331 122233222000
Q ss_pred CCcccC--------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 177 NDFKVT--------MEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 177 ~~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
+++ +| +++|++++.+... .+++ +++++| +|++|. +++.+++++|.++|++||+++|+||+|.++..
T Consensus 192 ~~~-~d~~~~~~~~~~~le~~i~~~~~--~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 192 GKD-MTPDEFGVVAARWLEEKILEIGA--DKVA-AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267 (459)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHHHHCG--GGEE-EEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred Ccc-cCHHHHHHHHHHHHHHHHHHcCC--CCEE-EEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 112 34 7888888864211 1344 555666 455555 55899999999999999999999999988544
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH-----HhhhcCCCChHHHHHHHHh
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-----KMSSFGLVSSQTQHLIATM 321 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~-----~~~~~~~~s~~~q~~~~~~ 321 (483)
.+ .. ...... . ....+ .+|||+++.+|+|+||+++ ++.+.+.+. .....+..+++++.++.++
T Consensus 268 ~G-~~-~~~~~~-~-----~~pdi---~t~sK~l~gg~~~lg~v~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aa 335 (459)
T 4a6r_A 268 TG-EW-FGHQHF-G-----FQPDL---FTAAKGLSSGYLPIGAVFV-GKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHAN 335 (459)
T ss_dssp TS-SS-SHHHHH-T-----CCCSE---EEECGGGGTTSSCCEEEEE-CHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHH
T ss_pred cc-cc-chHhhc-C-----CCCCe---eehhhhhcCCCCCccceee-CHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHH
Confidence 43 22 222222 1 11222 3789999844499999999 566766664 1222345788999888887
Q ss_pred cCChhHHHHHHHHHH-HHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecCchhhcc-----ChHHHHHHHHHHHHhcC
Q 011570 322 LSDDQFVEKFIAESA-KRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQ-----TYEAEMALWRVIINEVK 394 (483)
Q Consensus 322 l~~~~~~~~~~~~~~-~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~-----~~~~~~~~~~~Ll~~~g 394 (483)
|+.... +++.++.+ +.....++.+.+.|.++ .+....+.| .|+++++....... .......++..+++ +|
T Consensus 336 l~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G 412 (459)
T 4a6r_A 336 VAALRD-EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVG-MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NN 412 (459)
T ss_dssp HHHHHH-TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEET-TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TT
T ss_pred HHHHhc-chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEE-EEEEEEEecCccccccccchHHHHHHHHHHHHH-CC
Confidence 763211 12233333 33334444454555555 345555555 57777775421110 01113467777775 59
Q ss_pred eEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 395 LNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 395 V~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|.++|+. +++||++.. .+++++++++++|++++++..
T Consensus 413 v~v~~~g-------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 413 LIMRACG-------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp EECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEecCC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999862 689999755 599999999999999998764
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=231.77 Aligned_cols=282 Identities=18% Similarity=0.166 Sum_probs=196.3
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEE
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLV 169 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~ 169 (483)
.+..+|+++++++++ .+ +.|++++| ++++..++.+++++||+|+++.|+|++....+ +. .|.+++
T Consensus 52 ~~~~~l~~~la~~~~--------~~-~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~-~g~~~~ 120 (386)
T 1cs1_A 52 PTRDVVQRALAELEG--------GA-GAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKR-GCYRVL 120 (386)
T ss_dssp HHHHHHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTT-TSCEEE
T ss_pred ccHHHHHHHHHHHhC--------CC-cEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHh-cCCEEE
Confidence 356899999999986 22 66777666 89999999999999999999999998755533 44 489998
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.+ |++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+..
T Consensus 121 ~~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 121 FVDQG-------DEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EECTT-------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EeCCC-------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 88753 78999998864 7899999999999999998 8888999999999999999998753321
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~ 326 (483)
+. . .++++++.|+||.+|.+|.|+ ||++++++.+.+.+...... +..+++.+.++...+..
T Consensus 184 ----~~-~---------~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-- 247 (386)
T 1cs1_A 184 ----PL-A---------LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-- 247 (386)
T ss_dssp ----GG-G---------GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT--
T ss_pred ----cc-c---------cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH--
Confidence 11 1 145688999999999899997 99999664666655443332 33566776665555542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceee-cC----------------CceEEEeeecCchhhccChHHHHHHHHH
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVG-IGCL-KS----------------NAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~-~~----------------~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
+....+.+.++++.+.+.|+++. +... .+ ..+.++.+.++.. ...+. .
T Consensus 248 -----~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~ 313 (386)
T 1cs1_A 248 -----LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD--------EQTLR-R 313 (386)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC--------HHHHH-H
T ss_pred -----HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC--------HHHHH-H
Confidence 23334445666677777776652 2211 11 1134566666531 11333 3
Q ss_pred HHHhcCeEeeCCCCCC-------------------------CCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 389 IINEVKLNVSPGSSFH-------------------------CPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~-------------------------~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++.||.+++++ |+ ...++++||+++. ++.++.+++|.+++++.
T Consensus 314 ~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 314 FLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAA 383 (386)
T ss_dssp HHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred HHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHh
Confidence 4567899887432 11 0125799999984 45566666666666554
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-28 Score=243.83 Aligned_cols=286 Identities=11% Similarity=0.086 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCCh-hHHHHHHHHHhcCC---CCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGA-TGAHETVAFCLADP---GDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~-~~al~~~~~~l~~~---gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
.++.+++.+++.+++| .+ ++++|++|+|+ ++++..++.+++.+ ||.|+++.++|..+ ..++.. | +++.++
T Consensus 47 ~~~~~~l~~~la~~~g--~~-~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~-g-~~~~v~ 120 (360)
T 1w23_A 47 EEVHEQAQNLLRELLQ--IP-NDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLL-G-ETHIAA 120 (360)
T ss_dssp HHHHHHHHHHHHHHHT--CC-TTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTT-S-EEEEEE
T ss_pred HHHHHHHHHHHHHHhC--CC-CCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHh-C-CeEEee
Confidence 3344444444444444 22 36799999999 99999999999865 56777777777543 334554 9 999999
Q ss_pred cCCCCCcccCHHHHHH-HHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 173 CDSSNDFKVTMEALEA-AYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~-~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++.+ .+|++++++ ++. +++|+|++++|+||||.+++ ++. +++|++||+||+|..+ .. +
T Consensus 121 ~~~~~~-~~d~~~l~~~~i~------~~~k~v~~~~~~nptG~~~~--~i~------~~~~~~li~D~a~~~~--~~--~ 181 (360)
T 1w23_A 121 STKANS-YQSIPDFSEFQLN------ENDAYLHITSNNTIYGTQYQ--NFP------EINHAPLIADMSSDIL--SR--P 181 (360)
T ss_dssp ECGGGT-SCSCCCGGGCCCC------TTEEEEEEESEETTTTEECS--SCC------CCCSSCEEEECTTTTT--SS--C
T ss_pred cccccC-cCCccchHhhccC------CCCCEEEEeCCCCCcceecc--ccc------ccCCceEEEechhhcC--CC--C
Confidence 875333 378888887 663 37999999999999999987 232 3799999999999753 21 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--------------hcCCCChHHHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--------------SFGLVSSQTQHL 317 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--------------~~~~~s~~~q~~ 317 (483)
.++. .. .++++|+||.+|++| +||++++ +.+.+.+.... .++..+...+.+
T Consensus 182 -~~~~---------~~--di~~~s~sK~~~~~G--~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (360)
T 1w23_A 182 -LKVN---------QF--GMIYAGAQKNLGPSG--VTVVIVK-KDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYM 246 (360)
T ss_dssp -CCGG---------GC--SEEEEETTTTTSCTT--CEEEEEE-HHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHH
T ss_pred -cCcc---------cC--CEEEEEcccccCCCC--cEEEEEc-HHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHH
Confidence 1211 12 267899999999777 8999995 44433222111 113345555555
Q ss_pred HHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHhhhcCC-c-eee-cC--CceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 318 IATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQVG-I-GCL-KS--NAGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 318 ~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-i-~~~-~~--~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
+..++.. +.+ .+++.+++++++++++.+.|++++ + .+. .+ .+++++|++++... ...++.+.|.
T Consensus 247 ~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~ 317 (360)
T 1w23_A 247 LRNVLDW---IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE------LNQQFLAKAK 317 (360)
T ss_dssp HHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH------HHHHHHHHHH
T ss_pred HHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCCCc------cHHHHHHHHH
Confidence 5555532 122 356778888999999999998875 5 543 13 34669999987531 1235666655
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++||.+.+|..+ ++++||+++. .+++++++++++|++++++
T Consensus 318 -~~gi~~~~~~~~----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 318 -EQGFVGLNGHRS----VGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp -HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HCCeeeecCCCC----CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 569999998754 4689999985 4899999999999988754
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=243.46 Aligned_cols=283 Identities=13% Similarity=0.080 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc------CCCCeE-EEeCCCCcChHHHHhh---hc-
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA------DPGDAF-LVPTPYYPGFDRDLRW---RT- 164 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~------~~gd~V-lv~~P~y~~~~~~~~~---~~- 164 (483)
..++++.++++++ +++++|++|+|+++++..++.+++ ++||.| +++.++|+.+...+.. ..
T Consensus 73 ~~~l~~~la~~~g--------~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~ 144 (416)
T 1qz9_A 73 SERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQ 144 (416)
T ss_dssp HHHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC--------CCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhc
Confidence 4566777776654 467899999999999998888876 899974 5555678765544322 13
Q ss_pred -CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 165 -GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 165 -G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
|.+++.++. +++|++++.+ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|+.
T Consensus 145 ~g~~~~~v~~---------~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~ 206 (416)
T 1qz9_A 145 QGYTLRLVDS---------PEELPQAIDQ------DTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA 206 (416)
T ss_dssp SSCEEEEESS---------GGGHHHHCST------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCceEEEeCc---------HHHHHHHhCC------CceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccc
Confidence 888888874 5677777743 7899999999999999999 78889999999999999999973
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHh------------------
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKM------------------ 304 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~------------------ 304 (483)
+. .. .++..+ +..+++.|+||.++ +|.++ ||++++++ +.+.+...
T Consensus 207 ---g~-~~-~~~~~~---------~~d~~~~s~~K~l~-~g~~~~g~l~~~~~-~~~~l~~~~~g~~g~~~~~~~~~~~~ 270 (416)
T 1qz9_A 207 ---GA-VP-VDLHQA---------GADYAIGCTYKYLN-GGPGSQAFVWVSPQ-LCDLVPQPLSGWFGHSRQFAMEPRYE 270 (416)
T ss_dssp ---TT-SC-CCHHHH---------TCSEEEECSSSTTC-CCTTCCCEEEECTT-TTTTSCCSCCCGGGBCTTSCCCSSCC
T ss_pred ---cC-cC-CChhhc---------CCCEEEecCcccCC-CCCCCeEEEEECHH-HHhccCCCccccCccccccCCCCccC
Confidence 32 21 233222 23477889999984 77888 99999654 32222111
Q ss_pred -------hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCC----ceEEEeee
Q 011570 305 -------SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSN----AGLFLWMD 369 (483)
Q Consensus 305 -------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~----~g~f~~~~ 369 (483)
...+..+...+.++.+++.... ...+++.+++++++++++.+.|.+. |+++..+. .+.++|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~ 348 (416)
T 1qz9_A 271 PSNGIARYLCGTQPITSLAMVECGLDVFA--QTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFE 348 (416)
T ss_dssp BCSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEE
T ss_pred CCcchHHhcCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEe
Confidence 0123345555555544443210 1124566777788888899988876 78877663 24578998
Q ss_pred cCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec--cCCHHHHHHHHHHHHHHHHHhh
Q 011570 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA--NMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 370 l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++. ..++.+.|. ++||.+... .++++||+++ ..+++++++++++|++++++..
T Consensus 349 ~~~---------~~~l~~~l~-~~gi~~~~~------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 349 HPE---------GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp CTT---------HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCC---------HHHHHHHHH-hCCcEeccC------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 873 125677766 569987531 3578999997 3699999999999999988754
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=246.05 Aligned_cols=343 Identities=13% Similarity=0.133 Sum_probs=226.4
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC----cE
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD----RI 122 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~----~i 122 (483)
+.|+|..++|+.+ +.+.+++....... . .+ .+.....|+...+..++++.+.+++.+.+| ++++ +|
T Consensus 45 ~~i~L~a~e~~~~-~~V~eA~~~~l~~~-~-~~---g~p~~~~y~~~~~~~~le~~~~~~~a~~~g----~~~~~~~~~V 114 (483)
T 1rv3_A 45 VGLELIASENFAS-RAVLEALGSCLNNK-Y-SL---GYPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 114 (483)
T ss_dssp SSEECCTTCCCCC-HHHHHHHTSGGGTC-C-CC---EETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCeEEEcCCCCCC-HHHHHHHHHHHhcc-C-cc---cCCCccccCcchhHHHHHHHHHHHHHHHhC----CCcccCceEE
Confidence 4688888887654 44445443311100 0 00 001111243333456788888888888777 3443 48
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH--------HhhhcC--cEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD--------LRWRTG--VQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~--------~~~~~G--~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
++++|+ +++..++.++++|||+|++++|+|+++... +... | .+++++++++ .++.+|+++|++++.+
T Consensus 115 ~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~-G~~~~~v~~~~~~-~~~~iD~d~le~~i~~ 191 (483)
T 1rv3_A 115 QPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT-SIFFESMAYKVNP-DTGYIDYDRLEENARL 191 (483)
T ss_dssp CCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH-HHHSEEEEECBCT-TTCSBCHHHHHHHHHH
T ss_pred EECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccc-cceEEEEECcccc-CCCcCCHHHHHHHHhh
Confidence 888888 888888899999999999999998876532 2222 4 5666665553 3588999999999974
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc-CccCCCCCcchHHHhhhhccccCCCeEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA-TVFTKESSFVSIAEIIDQDIACNRNLIH 271 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~-~~~~~~~~~~s~~~l~~~~~~~~~~~vi 271 (483)
. ++|+|++ +++||+ .+++ +++|.++|+++|++||+|++|.. +.+.+ ....++ . ...+
T Consensus 192 ~-----~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~-~~~~p~----~-------~~di 249 (483)
T 1rv3_A 192 F-----HPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAG-VVPSPF----E-------HCHV 249 (483)
T ss_dssp H-----CCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSCCGG----G-------TCSE
T ss_pred c-----CCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccC-CCCCCC----C-------CCcE
Confidence 2 7899988 999998 8888 78889999999999999999863 22222 111111 1 2236
Q ss_pred EEecCccccCCCCceEEEEEecCh--------------HHHHHHHHhh-h--cCCCChHHHHHHHHhcCChhHHHHHHHH
Q 011570 272 IVYSLSKDMGFPGFRVGIIYSYND--------------QVVSCARKMS-S--FGLVSSQTQHLIATMLSDDQFVEKFIAE 334 (483)
Q Consensus 272 ~~~S~SK~~g~~GlRiG~li~~~~--------------~l~~~~~~~~-~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~ 334 (483)
++.|+||++ +|+|.||++++++ .+...+.... + .+..+.....+++.++.... ...+++
T Consensus 250 v~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~--~~~~~~ 325 (483)
T 1rv3_A 250 VTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM--TPEFKE 325 (483)
T ss_dssp EEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT--SHHHHH
T ss_pred EEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh--ChhHHH
Confidence 789999987 6889999999654 2333333221 1 12233333444443432110 122466
Q ss_pred HHHHHHHHHHHHHHhhhcCCceeecCC-ceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEee----CCCCCCCCCC
Q 011570 335 SAKRIAERHKAFTWGLSQVGIGCLKSN-AGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVS----PGSSFHCPNP 408 (483)
Q Consensus 335 ~~~~l~~~~~~l~~~L~~~gi~~~~~~-~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~----pg~~f~~~~~ 408 (483)
..+++.++++++.+.|.+.|+++..+. .++++|++++.. .+ ..++ ..+|++.||.+. ||..+. -.+
T Consensus 326 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~------~~~~-~~~L~~~gI~v~~~~~pg~~~~-~~~ 397 (483)
T 1rv3_A 326 YQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTD------GGRA-EKVLEACSIACNKNTCPGDKSA-LRP 397 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCC------HHHH-HHHHHHTTEECEEECCSSCSCT-TSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCC------HHHH-HHHHHhCCcEEecCCCCCCCcC-CCC
Confidence 677788899999999998899887653 346888888642 11 1234 345567899999 887422 245
Q ss_pred CEEEEEeccC-C----HHHHHHHHHHHHHHHHH
Q 011570 409 GWFRVCFANM-D----DRTMEIALSRITSFMLK 436 (483)
Q Consensus 409 ~~iRis~~~~-~----~e~l~~~l~~L~~~l~~ 436 (483)
+++||+++.. + ++++++++++|+++++.
T Consensus 398 ~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 398 SGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 7899999752 5 89999999999999876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-28 Score=240.09 Aligned_cols=287 Identities=12% Similarity=0.080 Sum_probs=201.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC-c-EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD-R-IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~-~-i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~v 171 (483)
..++++++.+.+.+.+| ++++ + +++|+|+++++..++.++++|||+|++..+.+... ...++.. | +++.+
T Consensus 47 ~~~~~~~~~~~la~~~g----~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~-g-~~~~v 120 (362)
T 2c0r_A 47 YEAVHNEAQARLLALLG----NPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-G-DTHVA 120 (362)
T ss_dssp HHHHHHHHHHHHHHHTT----CCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-S-CEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHh-C-CeEEE
Confidence 45567777777776665 4453 6 56789999999999999999999999887764432 3455555 9 99999
Q ss_pred ecCCC--CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 172 VCDSS--NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 172 ~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
+++.+ .++.+|.++++ +. +++++|++++|+||||.+++ ++++| +|+++|+|++|... .
T Consensus 121 ~~~~~~~~~~~~~~~~~~--i~------~~t~~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~---~- 180 (362)
T 2c0r_A 121 ASSEASNYMTLPKLQEIQ--LQ------DNAAYLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDIL---S- 180 (362)
T ss_dssp EECGGGTTCSCCCGGGCC--CC------TTEEEEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTT---S-
T ss_pred ecccccccccCCCHHHcc--cC------CCcCEEEEeCCcCccceecc--ccccc------CCCEEEEEChhhcc---C-
Confidence 88632 22334665543 32 37999999999999999754 25554 79999999999742 2
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-------------h-hhcCCCChHHH
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-------------M-SSFGLVSSQTQ 315 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-------------~-~~~~~~s~~~q 315 (483)
.+ .+ +. .. .+++.|+||.+|++| +||++++++. .+.+.. . ...++++.+.|
T Consensus 181 ~~-~~---~~------~~--d~~~~s~~K~~g~~G--~G~l~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 245 (362)
T 2c0r_A 181 RP-FD---LN------QF--GLVYAGAQKNLGPSG--VTVVIVREDL-VAESPKHLPTMLRYDTYVKNNSLYNTPPSFGI 245 (362)
T ss_dssp SC-CC---GG------GC--SEEEEETTTTTCCSS--CEEEEEEGGG-SSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHH
T ss_pred Cc-cc---hh------HC--cEEEEeccccccCcC--cEEEEEcHHH-HhhccccCchHHhHHHHhhccCcCCCchHHHH
Confidence 11 12 21 12 367789999999888 9999995443 222211 0 12245677788
Q ss_pred HHHHHhcCChhHHHH--HHHHHHHHHHHHHHHHHHhhhcCC-c-eeec---CCceEEEeeecCchhhccChHHHHHHHHH
Q 011570 316 HLIATMLSDDQFVEK--FIAESAKRIAERHKAFTWGLSQVG-I-GCLK---SNAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 316 ~~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~L~~~g-i-~~~~---~~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
.++..+++. +.+ .+++.+++++++++++.+.|.++| + ++.. ..++.++++.++...+ ..++++.
T Consensus 246 ~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 316 (362)
T 2c0r_A 246 YMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEEL------EKEFVKA 316 (362)
T ss_dssp HHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHH------HHHHHHH
T ss_pred HHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCCcch------HHHHHHH
Confidence 887777643 222 467778889999999999999887 6 6642 1234567888874221 2366776
Q ss_pred HHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 389 IINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
|. ++||.+.+|..| .+++|||++. .++++++.++++|++++++.
T Consensus 317 L~-~~gi~~~~g~~~----~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 317 SE-QEGFVGLKGHRS----VGGLRASIYNAVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp HH-HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HCCCeeccCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 65 569999988765 3579999975 48999999999999987653
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=234.77 Aligned_cols=192 Identities=21% Similarity=0.277 Sum_probs=146.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRT 164 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~ 164 (483)
+|+. .+..+|++++|++++ . .+.|++++| ++++..++. ++++||+|+++.|+|++....+ +. .
T Consensus 63 r~~~-p~~~~l~~~la~~~g--------~-~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~-~ 129 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDG--------A-KYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASE-F 129 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHT--------C-SEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGG-G
T ss_pred CCCC-chHHHHHHHHHHHhC--------C-CcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHH-c
Confidence 3443 356899999999986 1 256777766 589999998 8999999999999998755543 34 4
Q ss_pred CcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC-cEEEEcccccc
Q 011570 165 GVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN-IHLVCDEIYAA 243 (483)
Q Consensus 165 G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~-~~iI~Deay~~ 243 (483)
|++++.++.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+||+|..
T Consensus 130 G~~v~~v~~~-------d~~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~ 193 (403)
T 3cog_A 130 GLKISFVDCS-------KIKLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMS 193 (403)
T ss_dssp TCEEEEECTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred CCEEEEECCC-------CHHHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999998864 78889888753 7899999999999999998 888999999999 99999999987
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHH
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIAT 320 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~ 320 (483)
..+.. +. ..+.+++++|+||.+|.+| +|+||++++++.+.+.+..... + ...+++.+.++..
T Consensus 194 ~~~~~--~~-------------~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~ 258 (403)
T 3cog_A 194 PYFQR--PL-------------ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNR 258 (403)
T ss_dssp TTTCC--TT-------------TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_pred cccCC--cc-------------ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 54322 11 1245688999999998766 5799999966666666554333 3 2357777777777
Q ss_pred hcCC
Q 011570 321 MLSD 324 (483)
Q Consensus 321 ~l~~ 324 (483)
.+..
T Consensus 259 ~l~~ 262 (403)
T 3cog_A 259 GLKT 262 (403)
T ss_dssp HHTT
T ss_pred hhhH
Confidence 6665
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=240.54 Aligned_cols=345 Identities=11% Similarity=0.064 Sum_probs=206.7
Q ss_pred CCCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
....++|+..+. +.++ ++.+.+++.+... . .....|+. ....+|++.+++++. .+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~----------~-~~~~~~~~-~~~~~l~~~la~~~~---------~~ 111 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAE----------N-GVLYGTPT-ALEVKFAKMLKEAMP---------AL 111 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHH----------H-CSCCSSCC-HHHHHHHHHHHHHCT---------TC
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHH----------h-CcCCCCCC-HHHHHHHHHHHHhCC---------CC
Confidence 345678888765 4443 4555554443100 0 01123432 334567777776642 57
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCc--------c----cCHHH
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDF--------K----VTMEA 185 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~--------~----~d~~~ 185 (483)
++|++|+|+++++..++.++.. +++.|++.+|+|+++...+....|.....+......++ . -|+++
T Consensus 112 ~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 191 (434)
T 3l44_A 112 DKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVET 191 (434)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHH
Confidence 8999999999999999987754 77999999999987655433322322211111110000 0 17899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 186 LEAAYEKAQESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 186 l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
|++++++. +.++++ ++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+ . ......+ .
T Consensus 192 le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g-~-~~~~~~~-~--- 260 (434)
T 3l44_A 192 LKEALDKW---GHEVAA-ILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFM-Y-GGAQDLL-G--- 260 (434)
T ss_dssp HHHHHHHH---GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSS-S-SCHHHHH-T---
T ss_pred HHHHHHhC---CCCEEE-EEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-ecc-c-cHHHHHc-C---
Confidence 99998753 124554 55555 55666655 8889999999999999999999999886 333 2 2222222 1
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-----hhcCCCChHHHHHHHHhcC---ChhHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-----SSFGLVSSQTQHLIATMLS---DDQFVEKFIAES 335 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~ 335 (483)
.... +.||||.+| +|+|+||+++ ++.+.+.+... ...+..+++++.++.++++ +.++ .++.
T Consensus 261 --~~~d---i~t~sK~~~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~----~~~~ 329 (434)
T 3l44_A 261 --VTPD---LTALGKVIG-GGLPIGAYGG-KKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGL----YEKL 329 (434)
T ss_dssp --CCCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH----HHHH
T ss_pred --CCCC---eeehhhhhc-CCcCeeeEEE-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccH----HHHH
Confidence 1122 348999998 8999999988 56666554431 1124467888887766664 2222 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh-h------ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 336 AKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL-K------EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~-~------~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
++.....++.+.+.+...++....+..|.|+++.+.... . .........++..|++ +||.++|+. .
T Consensus 330 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~ 402 (434)
T 3l44_A 330 DELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPSK------Y 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSST------T
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeecC------C
Confidence 222222223333333334543333334457777764211 0 0011122356777775 599999874 2
Q ss_pred CEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 409 GWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 409 ~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+++|+++. .+++++++++++|++++++.++
T Consensus 403 ~~~rl~~~-~t~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 403 EAWFLTTE-HTKEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp CCEECCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecc-cCHHHHHHHHHHHHHHHHHHHh
Confidence 45898764 6999999999999999987654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=249.40 Aligned_cols=312 Identities=11% Similarity=0.092 Sum_probs=224.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-----CC---CeEEEeCCCCcChHHHH
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-----PG---DAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-----~g---d~Vlv~~P~y~~~~~~~ 160 (483)
.|....|..++++.+++++.+.+| .+.+++++++|+|+++++..++.++.+ +| |.|+++.|+|..+...+
T Consensus 98 ~~~~~~~~~~l~~~~~~~la~~~g--~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~ 175 (497)
T 3mc6_A 98 HPDVFPAVRKMESEVVSMVLRMFN--APSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAA 175 (497)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT--CCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHhC--CCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHH
Confidence 355555678999999999998877 333478999999999999999998865 56 89999999999999998
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
... |.+++.+++++ .++.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++
T Consensus 176 ~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~livD~a 244 (497)
T 3mc6_A 176 YYF-GMKLRHVELDP-TTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADD---IEGLGKIAQKYKLPLHVDSC 244 (497)
T ss_dssp HHS-CCEEEEECBCT-TTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCS---CTTTTTHHHHTTCCEEEETT
T ss_pred HHc-CCeEEEEecCc-ccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCC---HHHHHHHHHHhCCEEEEECc
Confidence 886 99999999875 3678999999998853 7899999999999999988 77888999999999999999
Q ss_pred cccCccC--CC---CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCC----
Q 011570 241 YAATVFT--KE---SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVS---- 311 (483)
Q Consensus 241 y~~~~~~--~~---~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s---- 311 (483)
|+.+... .. ...+.+. .. ..+..+++.|++|.++ +|.++||+++.++.+..........+..+
T Consensus 245 ~~~~~~~f~~~~~~~~~~~~~-~~------~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (497)
T 3mc6_A 245 LGSFIVSFMEKAGYKNLPLLD-FR------VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGS 316 (497)
T ss_dssp TTHHHHGGGTTTTCCSCCCCS-TT------STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCBTTCTTSCBCC
T ss_pred chhhhhhhhhhhcccCCcccc-cc------CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhcccccccCCCcCC
Confidence 9854321 10 0000111 10 1244577889999864 88899999996665443211111111000
Q ss_pred -----------hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceeec-CCceEEEeeecCchhhcc
Q 011570 312 -----------SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLK-SNAGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 312 -----------~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~-~~~g~f~~~~l~~~~~~~ 377 (483)
..++.++...+... .+++..+++.++++++.+.|.+. |+++.. +.++ ++++..+. .
T Consensus 317 ~~~~g~~~~~~~~a~~aal~~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~-~v~~~~~~-~--- 386 (497)
T 3mc6_A 317 PTLAGSRPGAIVVGCWATMVNMGEN-----GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYS-VISFSSKT-L--- 386 (497)
T ss_dssp SSSCSSCBHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSS-EEEEECTT-T---
T ss_pred cCcccCCcchhHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCee-EEEEeCCC-C---
Confidence 22344444444322 24556667778888999999984 888774 5555 55555542 1
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+..++.+.|.+ +||.+.++.. +..+|+++...+++++++++++|++++++..+.
T Consensus 387 ---~~~~l~~~L~~-~Gi~v~~~~~-----~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 387 ---NIHELSDRLSK-KGWHFNALQK-----PVALHMAFTRLSAHVVDEICDILRTTVQELKSE 440 (497)
T ss_dssp ---THHHHHHHHHT-TTCBCEECCS-----SCCEEEECCTTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred ---CHHHHHHHHHh-CCEEEecCCC-----CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 12366777764 5999887643 235899998669999999999999999887644
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=233.15 Aligned_cols=277 Identities=16% Similarity=0.155 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEeecC
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPVVCD 174 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~~~ 174 (483)
+|++.+|++++ .+ +.+++++| ++++..++.+++++||+|+++.|+|+.+...+.. ..|.+++.++.
T Consensus 2 ~l~~~la~~~g--------~~-~~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 70 (331)
T 1pff_A 2 ALEGKIAKLEH--------AE-ACAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM- 70 (331)
T ss_dssp HHHHHHHHHHT--------CS-EEEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-
T ss_pred hHHHHHHHHhC--------CC-eEEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-
Confidence 68999999986 23 55555555 8999999999999999999999999988776532 24999988875
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh-cCcEEEEccccccCccCCCCCcc
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE-KNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~-~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|++.+++++++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+||+|....+..
T Consensus 71 ------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~----- 130 (331)
T 1pff_A 71 ------AVPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN----- 130 (331)
T ss_dssp ------TSTTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-----
T ss_pred ------CCHHHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC-----
Confidence 367888887753 7899999999999999998 8889999999 999999999997543321
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCce-EEEEEecChHHHHHHHHhhhc---CCCChHHHHHHHHhcCChhHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR-VGIIYSYNDQVVSCARKMSSF---GLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR-iG~li~~~~~l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
++ . .++++++.|+||.+|.+|.| +||++++++.+.+.+...... +..+++.+.++...+...
T Consensus 131 ~~-~---------~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 196 (331)
T 1pff_A 131 PL-D---------LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTL---- 196 (331)
T ss_dssp GG-G---------GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_pred hh-h---------cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchH----
Confidence 11 1 25678899999999999999 899999543666666554433 235666666654444321
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc--------------C-CceeecC---CceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQ--------------V-GIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~--------------~-gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
....+...++.+.+.+.|++ . |+++..+ ..+.++.+.++. ..+ ...+++
T Consensus 197 ---~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~l~ 263 (331)
T 1pff_A 197 ---DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG---------LEK-AKKVLD 263 (331)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS---------HHH-HHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC---------HHH-HHHHHH
Confidence 11122222233333333322 1 2333221 123466777752 113 344566
Q ss_pred hcCeEeeCCCCCC------------------------CCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFH------------------------CPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 392 ~~gV~v~pg~~f~------------------------~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
++||.+++.+.-+ ...++++||+++. .++++++.+++.|++
T Consensus 264 ~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 264 NCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp TCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred hCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 7899876653111 0125799999986 367777777777764
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=232.70 Aligned_cols=288 Identities=15% Similarity=0.168 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEeecC
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPVVCD 174 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~~~ 174 (483)
+.++++++.+.+..| .+++++++|+++++..++.+++++||+|+++.|+|+.+...+.. ..|.+++.++.+
T Consensus 81 p~~~~l~~~la~~~g------~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~ 154 (414)
T 3ndn_A 81 PTVSVFEERLRLIEG------APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD 154 (414)
T ss_dssp HHHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT
T ss_pred hHHHHHHHHHHHHHC------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC
Confidence 344444444444433 36889999999999999999999999999999999988776643 139999999864
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
|+++|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|....+.. +
T Consensus 155 -------d~~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--~--- 213 (414)
T 3ndn_A 155 -------DLSQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ--G--- 213 (414)
T ss_dssp -------CHHHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--C---
T ss_pred -------CHHHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC--c---
Confidence 78999988853 7899999999999999988 7888999999999999999997432221 1
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH-hhhcC-CCChHHHHHHHHhcCChhHHHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK-MSSFG-LVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~-~~~~~-~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
+ . ...++++.|+||.+|.+| +|+||++++++.+.+.+.. ...++ ..++....++...+. .
T Consensus 214 ~-~---------~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~---~---- 276 (414)
T 3ndn_A 214 F-P---------LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE---T---- 276 (414)
T ss_dssp G-G---------GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---G----
T ss_pred h-h---------cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---H----
Confidence 1 1 134578899999999778 8999999955544434443 22333 234444333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-Cce-eecCC----------------ceEEEeeecCchhhccChHHHHHHHHHHHHhc
Q 011570 332 IAESAKRIAERHKAFTWGLSQV-GIG-CLKSN----------------AGLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~~----------------~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~ 393 (483)
+..+.++..++++.+.+.|++. ++. +..|. .|.++|+.++.... ........|...+. ..
T Consensus 277 l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~-~~~~~~~~~~~~l~-~~ 354 (414)
T 3ndn_A 277 LAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED-VAKQRAFEVLDKMR-LI 354 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG-GHHHHHHHHHHHCS-SS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc-ccHHHHHHHHHhCc-cc
Confidence 3344455567778888888776 443 22221 46689999974200 00112224444443 45
Q ss_pred CeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 394 KLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 394 gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
++.+..|..+.. ..++++|||++. |+.+.+++.|++++
T Consensus 355 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~---e~~~dli~dl~~al 413 (414)
T 3ndn_A 355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL---EDTDDLIADIDRAL 413 (414)
T ss_dssp EECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred eEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc---CCHHHHHHHHHHhh
Confidence 777777765421 235789999984 44566666666654
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-26 Score=233.86 Aligned_cols=308 Identities=13% Similarity=0.069 Sum_probs=200.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--------CCCeEEEeCCCCcChHH-HHhhh---
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDR-DLRWR--- 163 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~-~~~~~--- 163 (483)
..++++++++.+.+.++ .++++|++|+|+++++..++.++.. +||.|++.+|+|+++.. .+...
T Consensus 91 ~~~~~~~l~~~la~~~~----~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~ 166 (449)
T 3a8u_X 91 GHPLSFQLAEKITDLTP----GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVN 166 (449)
T ss_dssp CCHHHHHHHHHHHTTSS----TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCH
T ss_pred CCHHHHHHHHHHHHhCC----CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCCh
Confidence 34566666666665433 4678999999999999999988764 67999999999987643 33321
Q ss_pred ----------cCcEEEEeecCCCCCc-ccC--------HHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHH
Q 011570 164 ----------TGVQLVPVVCDSSNDF-KVT--------MEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLK 222 (483)
Q Consensus 164 ----------~G~~~~~v~~~~~~~~-~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~ 222 (483)
.|+..+++|.....+| .+| ++.|++++++.. ..+++ +++++| +||||. +.+.++++
T Consensus 167 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~-~vi~~p~~~~tG~~~~~~~~l~ 243 (449)
T 3a8u_X 167 GNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIA-AVFVEPLAGSAGVLVPPEGYLK 243 (449)
T ss_dssp HHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEE-EEEECSSBTTTTCBCCCTTHHH
T ss_pred hhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEE-EEEEcCccCCCCCccCCHHHHH
Confidence 0234444432111111 245 899999887421 02455 455667 478997 56799999
Q ss_pred HHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHH
Q 011570 223 DIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCA 301 (483)
Q Consensus 223 ~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~ 301 (483)
+|.++|++||++||+||+|.++.+.+ .. ..+... . ....++ ||||.++ +| +|+||++++ +.+.+.+
T Consensus 244 ~l~~l~~~~~~~li~Dev~~~~g~~g-~~-~~~~~~-~-----~~~di~---s~sK~l~-~G~~~~G~~~~~-~~~~~~l 310 (449)
T 3a8u_X 244 RNREICNQHNILLVFDEVITGFGRTG-SM-FGADSF-G-----VTPDLM---CIAKQVT-NGAIPMGAVIAS-TEIYQTF 310 (449)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTS-SS-SHHHHH-T-----CCCSEE---EECGGGG-TTSSCCEEEEEE-HHHHHHH
T ss_pred HHHHHHHHhCCEEEEeccccCccccC-cc-hhhhhc-C-----CCCCEE---EEccccc-CCCCceEEEEEC-HHHHHHh
Confidence 99999999999999999997643333 21 222222 1 112322 8999998 68 999999994 5666665
Q ss_pred HHhh-----------hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-cee--ecCCceEEEe
Q 011570 302 RKMS-----------SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGC--LKSNAGLFLW 367 (483)
Q Consensus 302 ~~~~-----------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~--~~~~~g~f~~ 367 (483)
.... ..+..+++++.++.++++.. ++ ....++++++++++.+.|.+++ +.. ..+..|+|+|
T Consensus 311 ~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~ 385 (449)
T 3a8u_X 311 MNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL---QK--ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGA 385 (449)
T ss_dssp HTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEE
T ss_pred hccCcccccccccccCCCcccHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEE
Confidence 4421 11335777777777666421 11 1234556666677777776642 221 1223457899
Q ss_pred eecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 368 MDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 368 ~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++....... ....++...|++ +||.++|+ + +++||+++. .+++++++++++|++++++.
T Consensus 386 i~~~~~~~~~~-~~~~~~~~~l~~-~Gv~v~~~------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 386 IQIAPRDGDAI-VRPFEAGMALWK-AGFYVRFG------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp EEECCBTTBSS-HHHHHHHHHHHH-HTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCccccc-ccHHHHHHHHHH-CCcEEecC------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99975321110 012257777775 59999986 1 689999753 69999999999999988653
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=238.84 Aligned_cols=348 Identities=10% Similarity=0.037 Sum_probs=209.7
Q ss_pred CCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||+..+. +.++ ++.+.+++.+.. .....|....+..++++++++++.+..+ ...+
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~ 105 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQL-------------GKIAHSTLLGMTNVPATQLAETLIDISP----KKLT 105 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHH-------------TTCSCCCCSSSEEHHHHHHHHHHHHHSC----TTEE
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHH-------------HhccCccccccCCHHHHHHHHHHHHhCC----CCCC
Confidence 35678888763 3332 344555444311 1112233344567788888888887643 3568
Q ss_pred cEEEeCChhHHHHHHHHHhcC----CC----CeEEEeCCCCcChHHHHhhhcCc------------EEEEeecCCCCCcc
Q 011570 121 RIVMSGGATGAHETVAFCLAD----PG----DAFLVPTPYYPGFDRDLRWRTGV------------QLVPVVCDSSNDFK 180 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~----~g----d~Vlv~~P~y~~~~~~~~~~~G~------------~~~~v~~~~~~~~~ 180 (483)
+|++|+|+++++..++.++.. +| |.|++.+|+|+++........|. .+..++.+ ..|.
T Consensus 106 ~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 183 (448)
T 3dod_A 106 RVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYR 183 (448)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTT
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--cccc
Confidence 999999999999999988865 44 99999999998765443332121 12233332 1222
Q ss_pred c-----------CHHHHHHHHHHHHhcCCceeEEEEeCCC-CCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 181 V-----------TMEALEAAYEKAQESNIRIKGVLITNPS-NPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 181 ~-----------d~~~l~~~i~~~~~~~~~~~~i~l~~P~-NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
. |+++|+++++.. ..++++|++..++ |++|. +.+.+.+++|.++|++||+++|+||+|.++.+.
T Consensus 184 ~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~ 260 (448)
T 3dod_A 184 SESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT 260 (448)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT
T ss_pred CCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc
Confidence 2 488899888732 1256666665556 88885 568888999999999999999999999875444
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH-------hh--hcCCCChHHHHH
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK-------MS--SFGLVSSQTQHL 317 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~-------~~--~~~~~s~~~q~~ 317 (483)
+ ..+ ..... . .... +.||||+++ +| +|+||+++ ++.+.+.+.. .. ..+..+++++.+
T Consensus 261 g-~~~-a~~~~-~-----~~~d---i~t~sK~l~-~G~~~ig~v~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa 327 (448)
T 3dod_A 261 G-KMF-ACEHE-N-----VQPD---LMAAGKGIT-GGYLPIAVTFA-TEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAV 327 (448)
T ss_dssp S-SSS-GGGGG-T-----CCCS---EEEECGGGG-TTSSCCEEEEE-EHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHH
T ss_pred c-chh-hhhhc-C-----CCCC---EEEeccccc-CCcCceEEEEE-CHHHHHHhhhccccCCcccccCCCCcCHHHHHH
Confidence 4 322 22111 1 1122 337899998 69 59999999 5666665533 11 123467888888
Q ss_pred HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchhhccC-----hHHHHHHHHHHHH
Q 011570 318 IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQT-----YEAEMALWRVIIN 391 (483)
Q Consensus 318 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~~~~~-----~~~~~~~~~~Ll~ 391 (483)
+.++|+.... +++.++.++..+..++.+.+ +..++ +....+. |.|+|+.++....... .....+++..+++
T Consensus 328 a~aal~~~~~-~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 404 (448)
T 3dod_A 328 ALENLALFES-ENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQL-GFMCGAELVRSKETKEPYPADRRIGYKVSLKMRE 404 (448)
T ss_dssp HHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEee-eEEEEEEEccCcccccccchhhHHHHHHHHHHHH
Confidence 8777753211 12233333333444444555 54443 3333333 5688888865321100 0002367777775
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+||.+.|+ .+++||+++. .+++++++++++|++++++..
T Consensus 405 -~Gv~~~~~-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 405 -LGMLTRPL-------GDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp -TTEECCEE-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEecc-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 49999886 2689997654 599999999999999998653
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=236.25 Aligned_cols=355 Identities=10% Similarity=0.037 Sum_probs=214.3
Q ss_pred CCCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
+...+||+..+ .+.++ ++.+.+++.+.. .....|....+..+++.++++++.+..+. ...
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~ 122 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQV-------------GDFTHTCFMVTPYEGYVAVCEQLNRLTPV---RGD 122 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHH-------------TTCSCCTTTTSCCHHHHHHHHHHHHHSSC---CSS
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHH-------------HhcccccCCccCCHHHHHHHHHHHHhCCc---CCC
Confidence 34567899877 44443 344555444311 11223444445677888888888766431 135
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCc-------------EEEEeecCCC--C-----
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGV-------------QLVPVVCDSS--N----- 177 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~-------------~~~~v~~~~~--~----- 177 (483)
++|++|+|+++++..++..+.. .++.|++.+++|+++........|. .+..++.+.. +
T Consensus 123 ~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 202 (451)
T 3oks_A 123 KRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGK 202 (451)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCT
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcccccccccc
Confidence 7999999999999999977653 4589999999998766554333111 3444444310 0
Q ss_pred -C---cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC--CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 178 -D---FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT--FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 178 -~---~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~--~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
. -..+++.+++.+++.. +++..++++++|.|++|- +.+.+.+++|.++|++||+++|+||+|.++.+.+ .
T Consensus 203 ~~~~~~~~~~~~~~~~l~~~~--~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g-~- 278 (451)
T 3oks_A 203 ELATDGELAAKRAITVIDKQI--GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-A- 278 (451)
T ss_dssp TTTTCHHHHHHHHHHHHHHHT--CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-S-
T ss_pred ccchhhHHHHHHHHHHHHhhc--CCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccc-c-
Confidence 0 0012444545554321 123456677788776663 4477789999999999999999999998754443 2
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
+...... . ....+ .||||++| +|+|+||+++ ++.+.+.+.... ..+..++++|.++.++|+.... .
T Consensus 279 ~~~~~~~-~-----~~pdi---~t~sK~l~-~G~~iG~v~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 346 (451)
T 3oks_A 279 MFACEHE-G-----IDPDL---IVTAKGIA-GGLPLSAVTG-RAEIMDSPHVSGLGGTYGGNPIACAAALATIETIES-E 346 (451)
T ss_dssp SSGGGGG-T-----CCCSE---EEECGGGG-TTSSCEEEEE-EHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-T
T ss_pred chhhhhc-C-----CCCCe---eeehhhhh-CCcceEEEEE-CHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHhh-h
Confidence 2222222 1 11222 28999998 5999999999 566655443222 2245788888888777753110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCceEEEeeecCchh-hccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLL-KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g~f~~~~l~~~~-~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
++.++.++.....++.+.+.+.+.+ +....+. |.|+|+++.... ..........++..+++ +||.+.|+..|
T Consensus 347 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~---- 420 (451)
T 3oks_A 347 GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY---- 420 (451)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC----
Confidence 1222222222333333444444443 3333444 468888874310 00111223467777775 59999997654
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.+++||+++. .+++++++++++|++++++
T Consensus 421 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 421 GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 3589999876 4999999999999998863
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=234.20 Aligned_cols=304 Identities=14% Similarity=0.110 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH---Hhhh-cCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD---LRWR-TGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~---~~~~-~G~~~~~v 171 (483)
..++++++.+.+.+.+| .+++.|++++| ++++..++.+++++||.|+++.|+|+.+... +... .+.+++.+
T Consensus 67 ~~~l~~~~r~~la~~~g----~~~~~i~~~sG-t~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 141 (405)
T 2vi8_A 67 VDIVEELARERAKQLFG----AEHANVQPHSG-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAY 141 (405)
T ss_dssp HHHHHHHHHHHHHHHHT----CSEEECCCSSH-HHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEE
T ss_pred HHHHHHHHHHHHHHHhC----CCceEEEecCc-HHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEec
Confidence 34555433333333333 34445556676 9999999999999999999999999887531 1122 13478888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
++++ .++.+|++.|++++.+. ++++|++ +|+|+ |...+ +++|.++|+++|+++|+||+|....+..+..
T Consensus 142 ~~~~-~~~~~d~~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~ 210 (405)
T 2vi8_A 142 GVDP-ETHVIDYDDVREKARLH-----RPKLIVA-AAAAY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLH 210 (405)
T ss_dssp CBCT-TTCSBCHHHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS
T ss_pred cccc-ccCCcCHHHHHHHHHhc-----CCeEEEE-eCCCC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcC
Confidence 7753 35789999999998752 5677766 56554 45555 7889999999999999999998432221011
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhhc---CCCChHHHHHHHHhcCChhH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSSF---GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~~---~~~s~~~q~~~~~~l~~~~~ 327 (483)
..+ + . ...++++|+||.++ .+| ||++++ +.+.+.+...... +..+.....++.+++...
T Consensus 211 ~~~---~-~-------~~di~~~s~sK~~~g~~g---G~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~-- 273 (405)
T 2vi8_A 211 PNP---V-P-------YAHFVTTTTHKTLRGPRG---GMILCQ-EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEA-- 273 (405)
T ss_dssp CCS---T-T-------TCSEEEEESSSTTCCCSC---EEEEEC-HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--
T ss_pred CCc---c-c-------cCCEEEEeccccCCCCCC---eEEEEc-HHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHH--
Confidence 111 1 1 12277899999997 566 999995 6666666554322 212333333333444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCC----
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSS---- 402 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~---- 402 (483)
...++++.+++++++++++.+.|++.|+++..+ .+++++|++++... . +..++.+.| .++||.+++|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~l-~~~gi~v~~g~~~~~~ 347 (405)
T 2vi8_A 274 LQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQ--L---TGKTAEKVL-DEVGITVNKNTIPYDP 347 (405)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGT--C---CHHHHHHHH-HHHTEECEEECCTTCS
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCC--C---CHHHHHHHH-HHcCceeccCcCcccc
Confidence 113467778888999999999999889888765 45789999987421 0 122556655 467999999863
Q ss_pred CCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHHHhh
Q 011570 403 FHCPNPGWFRVCFAN-----MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 403 f~~~~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++...++++||+++. .+++++++++++|++++++..
T Consensus 348 ~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 348 ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 332345789999984 579999999999999987654
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=238.15 Aligned_cols=301 Identities=12% Similarity=0.036 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC-------CC-CeEEEeCCCCcChHHHHhhhcC----
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD-------PG-DAFLVPTPYYPGFDRDLRWRTG---- 165 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~-------~g-d~Vlv~~P~y~~~~~~~~~~~G---- 165 (483)
+...++++.+.+.++ ...++|++|+|+++++..++.++.. +| +.|++.+|+|.++........+
T Consensus 118 ~~~~~L~e~la~~~~----~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 193 (457)
T 3tfu_A 118 EPAARLAKLLVDITP----AGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGG 193 (457)
T ss_dssp HHHHHHHHHHHHHSS----TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHhCC----CCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccc
Confidence 344444444444432 4567999999999999999988764 55 5899999999775543332211
Q ss_pred ---------cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcCCC-CHHHHHHHHHHHhhcCcE
Q 011570 166 ---------VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-PSNPLGTFL-DRETLKDIVSFINEKNIH 234 (483)
Q Consensus 166 ---------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~~~-~~~~l~~i~~~a~~~~~~ 234 (483)
..+..++.+.......|+++|++++++. ..++++|++.. ++||+|.++ +.+.+++|.++|++||++
T Consensus 194 ~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gil 270 (457)
T 3tfu_A 194 MHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVL 270 (457)
T ss_dssp --------CCCCEEECCCCSSCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCE
T ss_pred ccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1222333322221224789999998753 23677777777 799999876 778899999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--h-----h
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM--S-----S 306 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~--~-----~ 306 (483)
+|+||+|.++...+ . +.....+ . ...+++ ||||.++ .| +|+||+++ ++.+.+.+... . .
T Consensus 271 lI~DEv~~g~gr~G-~-~~a~~~~-~-----~~pdii---t~sK~l~-gG~~~lG~v~~-~~~i~~~~~~~~~~~~~~~~ 337 (457)
T 3tfu_A 271 LIFDEIATGFGRTG-A-LFAADHA-G-----VSPDIM---CVGKALT-GGYLSLAATLC-TADVAHTISAGAAGALMHGP 337 (457)
T ss_dssp EEEECTTTTTTTTS-S-SSTHHHH-T-----CCCSEE---EECGGGG-TTSSCCEEEEE-EHHHHHHHHHSSSCSCCCCC
T ss_pred EEEEcCccCCcccc-c-hhHhHhc-C-----CCceEE---EEChhhh-CCCcceEEEEE-cHHHHHHhhccCCCceeEec
Confidence 99999998854443 2 2232222 1 123333 9999987 56 79999999 56666666411 1 1
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
.+..++++++++.+.|+... + +...++++++.+++.+.|.++ ++....+.| +|++++++...+ .
T Consensus 338 t~~~n~~a~aaa~aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G-~~~~i~l~~~~~------~ 405 (457)
T 3tfu_A 338 TFMANPLACAVSVASVELLL---G--QDWRTRITELAAGLTAGLDTARALPAVTDVRVCG-AIGVIECDRPVD------L 405 (457)
T ss_dssp TTTTCHHHHHHHHHHHHHHH---T--SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECS-SCEEEEESSCCC------H
T ss_pred CCCcCHHHHHHHHHHHHHHh---h--hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCC-eEEEEEECCccc------H
Confidence 23467888887776664210 0 122333444555555555543 344444554 688888875321 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.++++.|+++ ||.++|+ .+++||+++. .+++++++++++|++++++..
T Consensus 406 ~~~~~~l~~~-Gv~v~~~-------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 406 AVATPAALDR-GVWLRPF-------RNLVYAMPPYICTPAEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHT-TEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHC-CeEEEec-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3677888765 9999873 2589999765 499999999999999987653
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-26 Score=234.77 Aligned_cols=288 Identities=13% Similarity=0.116 Sum_probs=197.8
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---------CCC-CeEEEeCCCCcChHH-HHhhhc
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---------DPG-DAFLVPTPYYPGFDR-DLRWRT 164 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---------~~g-d~Vlv~~P~y~~~~~-~~~~~~ 164 (483)
..++++.++++++ .++|++++|+++++..++.++. .+| |.|++.+|+|++... .+.. .
T Consensus 120 ~~~l~~~la~~~g----------~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~-~ 188 (439)
T 2oat_A 120 LGEYEEYITKLFN----------YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISS-S 188 (439)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTT-C
T ss_pred HHHHHHHHHHhcC----------CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhc-C
Confidence 5677777777653 4799999999999999998864 467 899999999976543 3333 2
Q ss_pred C------------cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhh
Q 011570 165 G------------VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINE 230 (483)
Q Consensus 165 G------------~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~ 230 (483)
| .+++.+|. .|+++|+++++. .++++|+ ++| +|+||. +++.+.+++|.++|++
T Consensus 189 g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~~-----~~~~~vi-~ep~~~~~G~~~~~~~~l~~l~~l~~~ 255 (439)
T 2oat_A 189 TDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQD-----PNVAAFM-VEPIQGEAGVVVPDPGYLMGVRELCTR 255 (439)
T ss_dssp CCHHHHTTSCSCCTTEEEECS-------SCHHHHHHHTTS-----TTEEEEE-ECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred CChhcccCCCCCCCCeEEeCC-------CCHHHHHHHhCC-----CCEEEEE-EECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 4 35555553 278999988841 2566555 556 577896 5689999999999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--hhc
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM--SSF 307 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~--~~~ 307 (483)
||+++|+||+|.++.+.+ .. .... ... ....+ + ||||.+| +| +|+||++++ +.+.+.+... ...
T Consensus 256 ~gillI~DEv~~g~g~~g-~~-~~~~-~~~-----~~~Di-~--t~sK~l~-~G~~~~G~v~~~-~~~~~~l~~~~~~~t 322 (439)
T 2oat_A 256 HQVLFIADEIQTGLARTG-RW-LAVD-YEN-----VRPDI-V--LLGKALS-GGLYPVSAVLCD-DDIMLTIKPGEHGST 322 (439)
T ss_dssp TTCEEEEECTTTTTTTTS-SS-SGGG-GGT-----CCCSE-E--EECGGGG-TTSSCCEEEEEC-HHHHTTSCTTSSCCS
T ss_pred cCCEEEEeccccCCccCC-cc-hhHH-HhC-----CCCcE-E--Eeccccc-CCCCCeEEEEEC-HHHHhccCCCCcccC
Confidence 999999999997643333 22 1211 111 11222 2 9999998 79 999999994 5555544321 112
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee--ecCCceEEEeeecCchhhccChHHHHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC--LKSNAGLFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~--~~~~~g~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
+..+++++.++.++++.. .+ ....++++++++++.+.|+++++++ ..+..|.|+|++++.... ....++
T Consensus 323 ~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~g~~~~v~l~~~~~----~~~~~l 393 (439)
T 2oat_A 323 YGGNPLGCRVAIAALEVL---EE--ENLAENADKLGIILRNELMKLPSDVVTAVRGKGLLNAIVIKETKD----WDAWKV 393 (439)
T ss_dssp STTCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEEETTEEEEEECCCSS----CCHHHH
T ss_pred CCcCHHHHHHHHHHHHHH---hh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeEEEEEEecCcc----HHHHHH
Confidence 346777777776666432 11 2345667778888888898775442 122345688898875210 012367
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
+..|++ +||.+.|+ +++++|++++. .+++++++++++|++++++
T Consensus 394 ~~~l~~-~Gv~v~~~------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 394 CLRLRD-NGLLAKPT------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp HHHHHH-TTEECCBS------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-CCeEEecC------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 788775 59999874 25689998865 5999999999999998753
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=231.37 Aligned_cols=322 Identities=13% Similarity=0.120 Sum_probs=219.1
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
++++++.+.+.+.. +.+.+.+.. ....|.+..+..+++++++++++ .+++++++
T Consensus 7 ~~~~l~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~l~~~la~~~~----------~~~~~~~~ 60 (374)
T 3uwc_A 7 PYSYLERQFADIEP--YLNDLREFI--------------KTADFTLGAELEKFEKRFAALHN----------APHAIGVG 60 (374)
T ss_dssp CSCCHHHHTSSCHH--HHHHHHHHH--------------HHTCCSSCHHHHHHHHHHHHHTT----------CSEEEEES
T ss_pred eeeccccCCCCchH--HHHHHHHHH--------------HcCCcccChhHHHHHHHHHHHhC----------CCcEEEeC
Confidence 46888888877665 445444310 11246666778999999999976 23889999
Q ss_pred ChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 127 GATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 127 G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
|+++++..++.++ +++||+|+++.|+|+.+...++.. |.+++.++.+ .++.+|++.+++++.+ ++++|+
T Consensus 61 ~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~-g~~~~~~~~~--~~~~~d~~~l~~~~~~------~~~~v~- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQA-GATPVLVDSE--NGYVIDPEKIEAAITD------KTKAIM- 130 (374)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC--TTSSBCGGGTGGGCCT------TEEEEC-
T ss_pred CHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEecC--CCCCcCHHHHHHhCCC------CceEEE-
Confidence 9999999999999 999999999999999999888876 9999999987 3678999999988753 677666
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCcchHHHhhhhccccCCCeEEEEecCc--cccCC
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSFVSIAEIIDQDIACNRNLIHIVYSLS--KDMGF 282 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~ 282 (483)
|+||||.+.+ +++|.++|+++|+++|+||+|.... +.. .. .. . -..+++.|+| |.+|.
T Consensus 131 --~~n~~G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~-~~------~~------~-~~d~~~~s~~~~K~l~~ 191 (374)
T 3uwc_A 131 --PVHYTGNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND-KF------VG------S-WGQFACFSLHPLKNLNV 191 (374)
T ss_dssp --CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT-EE------TT------S-SSSEEEEECSSSSSSCC
T ss_pred --EeCCcCCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC-ee------cc------c-cccEEEEeCCCCCcCCc
Confidence 9999999988 7888889999999999999998532 221 11 10 0 1245677866 99974
Q ss_pred CCceEEEEEecChHHHHHHHHhhhc--------------CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSF--------------GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~--------------~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 348 (483)
+|. .|+++++++.+.+.+...... ...+.+...+....+ . . +++..++.++..+++.+
T Consensus 192 ~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--~-~----~~~~~~~~~~~~~~l~~ 263 (374)
T 3uwc_A 192 WSD-AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM--N-Q----LETITEKRRGIAHLYDQ 263 (374)
T ss_dssp SSC-CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG--G-G----HHHHHHHHHHHHHHHHH
T ss_pred cce-eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH--H-H----HHHHHHHHHHHHHHHHH
Confidence 465 899998777777666554321 011222222222222 1 1 23344455666777888
Q ss_pred hhhcCC--ceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-----------C--------
Q 011570 349 GLSQVG--IGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-----------P-------- 406 (483)
Q Consensus 349 ~L~~~g--i~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-----------~-------- 406 (483)
.|.+.+ +.+.. +.++...|..++.... +..++.+.|. ++||.++++..... .
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L~-~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (374)
T 3uwc_A 264 SFVDLSEFIDVPVRREGVYHVFHIYVLRVK-----YRDQLFQYLK-DNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAE 337 (374)
T ss_dssp HTGGGTTTEECCCCCTTEECCCSSEEEEET-----THHHHHHHHH-HTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHH
T ss_pred HhccCCCeEEeccCCCCCceeeEEEEEEcC-----CHHHHHHHHH-HCCCccccCCCCccccChhhhhcCCccCCCccHH
Confidence 888764 65532 2333233222211000 1235666666 45999998851100 0
Q ss_pred --CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 407 --NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 --~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+.+||++.. .+++++++++++|++++++.
T Consensus 338 ~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 338 KHGEAVITLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp HHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 01579999966 59999999999999988653
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-27 Score=235.89 Aligned_cols=324 Identities=14% Similarity=0.172 Sum_probs=212.9
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCC-CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQ-DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++++++.+.+.++.... +.+.+. + ....|+ +..+..+||+++|++++ .+++++
T Consensus 22 ~~~~~l~~~~p~~~~~~~-~a~~~~-------------~-~~~~~~~~~~~~~~l~~~la~~~~----------~~~~i~ 76 (391)
T 3dr4_A 22 SDLPRISVAAPRLDGNER-DYVLEC-------------M-DTTWISSVGRFIVEFEKAFADYCG----------VKHAIA 76 (391)
T ss_dssp ------CCCCCCCCSSHH-HHHHHH-------------H-HHTCCSSCSHHHHHHHHHHHHHHT----------CSEEEE
T ss_pred CCCceeccCCCCCCHHHH-HHHHHH-------------H-HcCCccCCChHHHHHHHHHHHHhC----------CCcEEE
Confidence 467888888776653332 222220 0 012355 55678999999999986 238888
Q ss_pred eCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
++|+++++..++.++ +++||+|+++.|+|+.+...+... |.+++.+++++ .+|.+|++.|++++.+ ++++|
T Consensus 77 ~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~v 148 (391)
T 3dr4_A 77 CNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYC-GATPVLVDNDP-RTFNLDAAKLEALITP------RTKAI 148 (391)
T ss_dssp ESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBCT-TTCSBCGGGSGGGCCT------TEEEE
T ss_pred eCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHC-CCEEEEEecCc-cccCcCHHHHHHhcCC------CceEE
Confidence 999999999999999 999999999999999999988876 99999999874 3578999999988753 67777
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCCCCcchHHHhhhhccccCCCeEEEEecCc--ccc
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKESSFVSIAEIIDQDIACNRNLIHIVYSLS--KDM 280 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S--K~~ 280 (483)
+ |+||||.+.+ +++|+++|+++|++||+||+|+... +.+ . ... ... .+.+.||| |.+
T Consensus 149 ~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~-~---~~~---------~~~-di~~~S~s~~K~l 208 (391)
T 3dr4_A 149 M---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRG-K---KSG---------SLG-DCATFSFFGNAII 208 (391)
T ss_dssp C---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT-E---ETT---------SSS-SEEEEECBTTSSS
T ss_pred E---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECC-e---eec---------ccC-CEEEEECCCCCcC
Confidence 6 6789999988 7888899999999999999997532 222 1 100 011 25667877 665
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhcCCC--------------ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHH
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSFGLV--------------SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAF 346 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~~~~--------------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 346 (483)
+|.+.|+++++++.+.+.+......+.. ......++..+... . .+++..++.++..+++
T Consensus 209 --~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~-~----~~~~~~~~~~~~~~~l 281 (391)
T 3dr4_A 209 --TTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQL-E----RVDEHLAARERVVGWY 281 (391)
T ss_dssp --CCBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHH-H----THHHHHHHHHHHHHHH
T ss_pred --CcCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHH-H----HHHHHHHHHHHHHHHH
Confidence 5567899999777777666554322111 11111222222111 1 1334445556667778
Q ss_pred HHhhhcCCceeecC------Cce-EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC---CC--------C--
Q 011570 347 TWGLSQVGIGCLKS------NAG-LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF---HC--------P-- 406 (483)
Q Consensus 347 ~~~L~~~gi~~~~~------~~g-~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f---~~--------~-- 406 (483)
.+.|.+.|+.+..+ ..+ +.+++.++.... ....++.+.|.+ +||.+++|... .+ .
T Consensus 282 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~~~~~~~ 356 (391)
T 3dr4_A 282 EQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLS----TTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHLATDDLK 356 (391)
T ss_dssp HHHHGGGTTSEECCCCCTTSCCCCSSEEEEECSSCS----SCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGGCCTTCH
T ss_pred HHHhhcCCccccCcCCCCCCcceeEEEEEEECCccc----hhHHHHHHHHHH-CCCceeecCCccccChhhhhcCcCCCh
Confidence 88888777776554 122 234666654100 012366777765 59999987521 00 0
Q ss_pred -----CCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 407 -----NPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 407 -----~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
..+.+||++.. .++++++.++++|++++
T Consensus 357 ~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 357 IAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 12469999965 59999999999998653
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=239.66 Aligned_cols=340 Identities=14% Similarity=0.079 Sum_probs=208.9
Q ss_pred CCCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
....+||++.+. +.++ ++.+.+++.+... .. ....|+ .....+|++.+++++. .+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~----------~~-~~~~~~-~~~~~~l~~~la~~~~---------~~ 109 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAE----------RG-TSFGAP-TEIENKLAKLVIERVP---------SI 109 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHH----------HC-SCCSSC-CHHHHHHHHHHHHHST---------TC
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHh----------hC-cCcCCC-CHHHHHHHHHHHHhCC---------CC
Confidence 345688888775 4443 4555555543110 00 112243 3345677777777653 47
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcc------------cCHHH
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFK------------VTMEA 185 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~------------~d~~~ 185 (483)
++|++|+|+++++..++..+.. +++.|++.+|+|+++........|..+..++.+...++. -|+++
T Consensus 110 ~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 3k28_A 110 EIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLES 189 (429)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHH
T ss_pred CEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHH
Confidence 8999999999999999987754 678999999999765543322223222111111111110 17899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 186 LEAAYEKAQESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 186 l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
|++++++. ..++++ ++++| +|++|.+. +.+++++|.++|++||+++|+||+|.++ ..+ . ... .....
T Consensus 190 le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g-~-~~~-~~~~~--- 258 (429)
T 3k28_A 190 VKYAFEQF---GDDIAC-VIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA-Y-NCG-QGYYG--- 258 (429)
T ss_dssp HHHHHHHH---GGGEEE-EEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS-T-THH-HHHHT---
T ss_pred HHHHHHhC---CCCEEE-EEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC-c-chH-HHHhC---
Confidence 99988753 124554 55555 55566555 6888999999999999999999999876 333 2 122 22221
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-----hhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-----SSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKR 338 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~ 338 (483)
.... +.||||++| +|+|+||+++ ++.+.+.+... ...+..+++++.++.++++... ++..+.
T Consensus 259 --~~~d---i~t~sK~~~-~G~~iG~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~~~~~~ 325 (429)
T 3k28_A 259 --VTPD---LTCLGKVIG-GGLPVGAYGG-KAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT------PESYVE 325 (429)
T ss_dssp --CCCS---EEEECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC------HHHHHH
T ss_pred --CCCc---eehhhhhhc-CCCCeEEEEE-cHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH------HHHHHH
Confidence 1122 347999998 6999999999 56665554331 1124567888888877776432 223344
Q ss_pred HHHHHHHHHHhhhc----CCc-eeecCCceEEEeeecCchhh-------ccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 339 IAERHKAFTWGLSQ----VGI-GCLKSNAGLFLWMDLHHLLK-------EQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 339 l~~~~~~l~~~L~~----~gi-~~~~~~~g~f~~~~l~~~~~-------~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
++++++++.+.|.+ .++ ...++.| .|+++.+..... ........++++.+++ +||.++|+.
T Consensus 326 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----- 398 (429)
T 3k28_A 326 FERKAEMLEAGLRKAAEKHGIPHHINRAG-SMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPSQ----- 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEET-TEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSST-----
T ss_pred HHHHHHHHHHHHHHHHhhCCCCEEEEeec-cEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecCC-----
Confidence 45555555555544 333 2334444 577777643110 0111123467777774 599999873
Q ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 407 NPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 407 ~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++|+++. .+++++++++++|++++++.
T Consensus 399 -~~~~r~~~~-~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 399 -FEGLFLSTV-HSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp -TSCBCCCTT-CCHHHHHHHHHHHHHHHHTC
T ss_pred -CCCEEEECC-CCHHHHHHHHHHHHHHHHHH
Confidence 346888775 69999999999999998754
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=235.09 Aligned_cols=318 Identities=9% Similarity=-0.004 Sum_probs=219.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc-----EEEeCChhHHHHHHHHHhcC--------CC-----CeEEEeC
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR-----IVMSGGATGAHETVAFCLAD--------PG-----DAFLVPT 150 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~-----i~it~G~~~al~~~~~~l~~--------~g-----d~Vlv~~ 150 (483)
.|....+..++++++.+++.+.+| ++.++ +++|+|+++++..++.++.+ +| +.|+++.
T Consensus 72 ~~~~~~~~~~l~~~~~~~la~l~g----~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~ 147 (452)
T 2dgk_A 72 DKEEYPQSAAIDLRCVNMVADLWH----APAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP 147 (452)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHTT----CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS
T ss_pred ChhhChhHHHHHHHHHHHHHHHhC----CCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC
Confidence 344555778899999999988877 44444 99999999999999888754 55 5899999
Q ss_pred CCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh
Q 011570 151 PYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE 230 (483)
Q Consensus 151 P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~ 230 (483)
+|..+...+... |++++.+|+++ ++|.+|+++|+++|.+ ++++|++++|+||||.+.+ +++|.++|++
T Consensus 148 -~h~~~~~~~~~~-G~~v~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~ 215 (452)
T 2dgk_A 148 -VQICWHKFARYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEF---PQPLHDALDK 215 (452)
T ss_dssp -CCHHHHHHHHHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCC---HHHHHHHHHH
T ss_pred -CcHHHHHHHHHc-CceEEEEecCC-CCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHHHHH
Confidence 999998888876 99999999875 3688999999999864 7899999999999999988 7777888888
Q ss_pred c------CcEEEEccccccCcc--CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH-HHHH
Q 011570 231 K------NIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-VSCA 301 (483)
Q Consensus 231 ~------~~~iI~Deay~~~~~--~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l-~~~~ 301 (483)
+ |+++++|++|+.+.. .. ........ .....++..|++| ++++|+++||+++.++.+ .+.+
T Consensus 216 ~~~~~~~~~~l~vD~a~~~~~~~~~~-~~~~~~~~--------~~~~d~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~ 285 (452)
T 2dgk_A 216 FQADTGIDIDMHIDAASGGFLAPFVA-PDIVWDFR--------LPRVKSISASGHK-FGLAPLGCGWVIWRDEEALPQEL 285 (452)
T ss_dssp HHHHHCCCCCEEEECTTGGGTHHHHC-TTCCCSTT--------STTEEEEEEETTT-TTCCCSSCEEEEESSGGGSCGGG
T ss_pred HhhccCCCCcEEEEcccHHHHHHhhC-ccchhhcC--------CCCCcEEEECccc-ccCCCCCeEEEEEcCHHHHHHHh
Confidence 4 999999999987532 11 11110001 1134556778999 557999999999965432 2222
Q ss_pred HHhhhcC-----------CC---ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC----Cc
Q 011570 302 RKMSSFG-----------LV---SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS----NA 362 (483)
Q Consensus 302 ~~~~~~~-----------~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~----~~ 362 (483)
.....+. .. ..+.+.++...+. .+.+++..+++.++++++.+.|++. ++++..+ ..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 360 (452)
T 2dgk_A 286 VFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 360 (452)
T ss_dssp CEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTB
T ss_pred ccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCC
Confidence 1111111 00 2233444433332 2235666777888899999999988 5887753 23
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFH-CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~-~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
..++.++++.... ... ...++.+.|.+ .||.++.+.... ..+.+++|++++. .++++++.+++.|+++++..++.
T Consensus 361 ~~~v~f~~~~~~~-~~~-~~~~l~~~L~~-~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 361 IPAVCFKLKDGED-PGY-TLYDLSERLRL-RGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp SSEEEEEECTTCC-CSC-CHHHHHHHHHH-TTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEecCccc-ccC-CHHHHHHHHHh-cCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3466667753210 000 11367777775 598655322111 1134589999976 48899999999999998877654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-26 Score=236.01 Aligned_cols=306 Identities=16% Similarity=0.094 Sum_probs=200.6
Q ss_pred CcHHHH--HHHH-HHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH-HH--Hhhh-cCcE
Q 011570 95 GLPEFR--NAVA-KFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD-RD--LRWR-TGVQ 167 (483)
Q Consensus 95 g~~~Lr--~~ia-~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~-~~--~~~~-~G~~ 167 (483)
|...++ ++++ +++.+.+| .+. ..++++|+++++..++.+++++||+|+++.|+|..+. .. +... .+..
T Consensus 85 g~~~~~~~e~~a~~~la~~~g----~~~-~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~ 159 (447)
T 3h7f_A 85 GCEHVDVVENLARDRAKALFG----AEF-ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYE 159 (447)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT----CSE-EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSE
T ss_pred ccHHHHHHHHHHHHHHHHHcC----CCc-eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeE
Confidence 444444 5555 66666655 232 2332777889999999999999999999999987732 11 1111 1556
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc-Ccc
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA-TVF 246 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~-~~~ 246 (483)
+++++++++ ++.+|++++++++.+. ++++|++++|+||++. ++++|.++|+++|+++|+||+|.. +.+
T Consensus 160 ~~~~~~~~~-~~~~d~~~l~~~i~~~-----~~~~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~ 228 (447)
T 3h7f_A 160 NGFYGVDPA-THLIDMDAVRATALEF-----RPKVIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVA 228 (447)
T ss_dssp EEEECCCTT-TCSCCHHHHHHHHHHH-----CCSEEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHH
T ss_pred EEEcCcCcc-cCCcCHHHHHHHHHhc-----CCeEEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhc
Confidence 777776643 5789999999999653 6788999999999987 488999999999999999999743 233
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc--CCCChHHHHHHHHhcC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF--GLVSSQTQHLIATMLS 323 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~--~~~s~~~q~~~~~~l~ 323 (483)
.+ .. .+.. . ...+++.|+||++ +|+|.||++++ +.+.+.+.... .+ +......+.+++.++.
T Consensus 229 ~g-~~-~~~~---~-------~~di~~~s~sK~l--~G~~gG~i~~~-~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~ 293 (447)
T 3h7f_A 229 AG-LH-PSPV---P-------HADVVSTTVHKTL--GGGRSGLIVGK-QQYAKAINSAVFPGQQGGPLMHVIAGKAVALK 293 (447)
T ss_dssp TT-SS-CCST---T-------TCSEEEEESSGGG--CCCSCEEEEEC-GGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHH
T ss_pred CC-CC-CCCC---C-------CCcEEEecCCcCC--CCCCeEEEEEC-HHHHHHHhhhcCCcccCCccHHHHHHHHHHHH
Confidence 33 21 1211 1 1236789999987 58899999994 45555554432 22 2222232333333322
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----Cceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEe
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQV-----GIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v 397 (483)
.. .....++..+++.++++++.+.|.+. |+++.. +.+++++|+++..... ..+.+..+++++||.+
T Consensus 294 ~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~GI~v 365 (447)
T 3h7f_A 294 IA--ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPL------DGQAAEDLLHEVGITV 365 (447)
T ss_dssp HT--TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSC------CHHHHHHHHHHTTEEC
T ss_pred Hh--hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCCC------CHHHHHHHHHHCCeEE
Confidence 10 01124666777888889999999887 888764 3456788888864211 1144556677789999
Q ss_pred e----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHHHhhh
Q 011570 398 S----PGSSFHCPNPGWFRVCFAN-----MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 398 ~----pg~~f~~~~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
. |+..+.+..++++||++.. .++++++++++.|++++++..+
T Consensus 366 ~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 366 NRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSS 416 (447)
T ss_dssp BC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSGGG
T ss_pred ecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhccCc
Confidence 8 6643333345689999843 4689999999999999877643
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=224.74 Aligned_cols=281 Identities=16% Similarity=0.150 Sum_probs=197.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v 171 (483)
..+|++.+|++++ .+++++++|+++++..++.+++++||+|+++.|+|+.+...+ +.. |.+++.+
T Consensus 68 ~~~l~~~la~~~g----------~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~-g~~~~~v 136 (392)
T 3qhx_A 68 RTALEAALAAVED----------AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGW-NVEYTPV 136 (392)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGG-TCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhc-CcEEEEe
Confidence 4678888888765 247899999999999999999999999999999999877666 444 9999998
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|... +.. .+
T Consensus 137 ~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~-~~~-~~ 198 (392)
T 3qhx_A 137 ALA-------DLDAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASP-ALQ-QP 198 (392)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCT-TTC-CG
T ss_pred CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccc-ccC-Ch
Confidence 864 78999998863 7999999999999999988 888999999999999999999754 222 11
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~ 328 (483)
. . ...++++.|+||.+|.+| +|+||++++++.+.+.+..... . ...++..+.++...+...
T Consensus 199 ---~-~---------~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l--- 262 (392)
T 3qhx_A 199 ---L-S---------LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL--- 262 (392)
T ss_dssp ---G-G---------GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH---
T ss_pred ---H-H---------hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH---
Confidence 1 1 144578999999999777 8999999976666666554433 2 345666666666666542
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecCC----------------ceEEEeeecCchhhccChHHHHHHHHHHH
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKSN----------------AGLFLWMDLHHLLKEQTYEAEMALWRVII 390 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~~----------------~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll 390 (483)
..+.++..++.+.+.+.|+++ ++. +..|. .|..+++.++... .....+...+
T Consensus 263 ----~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~-----~~~~~~~~~l- 332 (392)
T 3qhx_A 263 ----VLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR-----TAAEQLCAKT- 332 (392)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH-----HHHHHHHHHC-
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH-----HHHHHHHHhC-
Confidence 233444566667777777765 332 22111 2457888887521 1122344333
Q ss_pred HhcCeEeeCCCCCCC------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 391 NEVKLNVSPGSSFHC------------------PNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+..++.+..|+.+.. ..++.||||++. ++.++.++.|.+++
T Consensus 333 ~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~~~i~~l~~al 391 (392)
T 3qhx_A 333 NIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI---EDVADLLDDLKQAL 391 (392)
T ss_dssp SSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS---SCHHHHHHHHHHHH
T ss_pred CCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc---CCHHHHHHHHHHHh
Confidence 345777777765321 135689999984 34555555555544
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=225.31 Aligned_cols=279 Identities=18% Similarity=0.178 Sum_probs=190.7
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~ 170 (483)
...++++.++++++ . + +.++++++++++..++.+++++||+|+++.|+|+.+...+ .. .|.+++.
T Consensus 66 ~~~~l~~~la~~~g--------~-~-~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~-~g~~~~~ 134 (398)
T 1gc0_A 66 TLNLLEARMASLEG--------G-E-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGE-FGVKLRH 134 (398)
T ss_dssp HHHHHHHHHHHHHT--------C-S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGG-GTCEEEE
T ss_pred HHHHHHHHHHHHhC--------C-C-cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHH-cCCEEEE
Confidence 45778888888775 1 2 5555555579999999999999999999999999887766 44 4999988
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.+ |++.+++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|....+..
T Consensus 135 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~-- 196 (398)
T 1gc0_A 135 VDMA-------DLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR-- 196 (398)
T ss_dssp ECTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC--
T ss_pred ECCC-------CHHHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 8753 78899888753 7899999999999999998 8889999999999999999998643321
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhh-h-c-CCCChHHHHHHHHhcCChh
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMS-S-F-GLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~-~-~-~~~s~~~q~~~~~~l~~~~ 326 (483)
++ . .+.++++.|+||.+|.+|.|+ ||++++++.+.+.+.... . + +..+++.+.++...+...
T Consensus 197 ---~~-~---------~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 262 (398)
T 1gc0_A 197 ---PL-E---------LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL- 262 (398)
T ss_dssp ---GG-G---------GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH-
T ss_pred ---ch-h---------hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH-
Confidence 11 1 145688899999999999998 999995444443443322 2 2 346777777666666532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce--------------eec----CCceEEEeeecCchhhccChHHHHHHHH
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQV-GIG--------------CLK----SNAGLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~--------------~~~----~~~g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
....+...++.+.+.+.|.++ ++. +.. ..++ ++.++++.. .+...
T Consensus 263 ------~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~---------~~~~~ 326 (398)
T 1gc0_A 263 ------NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGG-MIAFELKGG---------IGAGR 326 (398)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTT-EEEEEETTH---------HHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCce-EEEEEECCC---------HHHHH
Confidence 233344455556666666654 121 111 2344 555677531 12345
Q ss_pred HHHHhcCeEeeC---CCCC------------C---------CCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSP---GSSF------------H---------CPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 388 ~Ll~~~gV~v~p---g~~f------------~---------~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
.++++.||.++. |+.. . ...++++|||++. .++++++.+.++|++
T Consensus 327 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 327 RFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 566677887665 3210 0 0124799999986 355666666666654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-26 Score=229.81 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEE-eCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh-HHHHhhh-cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVM-SGGATGAHETVAFCLADPGDAFLVPTPYYPGF-DRDLRWR-TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~-~~~~~~~-~G~~~~~v~~ 173 (483)
.++|+.++++++ ++ ++++|++ |+|+++++..++.+++++| .+.+..+.|... ...+... .|.+++.+++
T Consensus 81 ~~~~~~la~~~g------~~-~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~ 152 (398)
T 2fyf_A 81 GRVRSGLAELFS------LP-DGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITS 152 (398)
T ss_dssp HHHHHHHHHHTT------CC-TTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEEC
T ss_pred HHHHHHHHHHhC------CC-CCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEec
Confidence 455555555554 22 3478999 9999999999999999887 223333333211 1122221 1778888887
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
++ ++..+.+ + ..++++|++++|+||||.+++.+++.++ +|++||+||+|..+ .. + .
T Consensus 153 ~~--g~~~~~~-----i------~~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~--~~--~-~ 208 (398)
T 2fyf_A 153 DP--GSAPEPQ-----T------DPSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAG--GL--P-V 208 (398)
T ss_dssp CT--TCCCCCC-----C------CTTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTT--TS--C-C
T ss_pred CC--CCCCCcc-----c------cCCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccC--Cc--c-c
Confidence 62 3333321 2 2378999999999999999996666554 79999999999753 21 1 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-----------------------hhcCCC
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-----------------------SSFGLV 310 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-----------------------~~~~~~ 310 (483)
++ . +..+++.|+||.+|++| ++||++++ +.+.+.++.. ..+++.
T Consensus 209 ~~----~-------~~di~~~s~sK~~~~~g-g~g~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 275 (398)
T 2fyf_A 209 DI----A-------ETDAYYFAPQKNFASDG-GLWLAIMS-PAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTP 275 (398)
T ss_dssp CG----G-------GCSEEEECTTSTTCSCS-SEEEEEEC-HHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCC
T ss_pred Cc----c-------cCcEEEEecCcccCCCC-ceEEEEEC-HHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCC
Confidence 11 1 12367889999999775 59999994 5554443221 112445
Q ss_pred ChHHHHHHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcC-Cceeec--C--CceEEEeeecCchhhccChHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQV-GIGCLK--S--NAGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~--~~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
+..++.++..++.. +.+. +++.+++++++++++.+.|+++ |+++.. + .+++++|++++...+ ..
T Consensus 276 ~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 346 (398)
T 2fyf_A 276 AIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVD------AG 346 (398)
T ss_dssp CHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSC------HH
T ss_pred CHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCC------HH
Confidence 55666666666532 2222 5677788889999999999988 888763 4 345599999874322 23
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++.+.|.++ ||.+++|. ...+++++||+++. .+++++++++++|++++++
T Consensus 347 ~l~~~L~~~-gI~v~~g~--~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 347 TVAKILRAN-GIVDTEPY--RKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHT-TCBCCSCC--TTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHC-CcEEecCc--ccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 677777765 99999873 22235799999985 5999999999999988754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=229.57 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=179.0
Q ss_pred CCcEEEeCChhHHHHHHHHHhc---------CCC-CeEEEeCCCCcChHHHHhhhcC------------cEEEEeecCCC
Q 011570 119 PDRIVMSGGATGAHETVAFCLA---------DPG-DAFLVPTPYYPGFDRDLRWRTG------------VQLVPVVCDSS 176 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~---------~~g-d~Vlv~~P~y~~~~~~~~~~~G------------~~~~~v~~~~~ 176 (483)
.++|++|+|+++++..++.++. .+| |.|++.+|+|+++........| ..++.+|.
T Consensus 122 ~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~--- 198 (433)
T 1z7d_A 122 YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY--- 198 (433)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---
T ss_pred CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---
Confidence 5799999999999999998753 467 9999999999876443222223 23444442
Q ss_pred CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 177 NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 177 ~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
.|++.|+++++. .++++|+++..+|+||.+ ++.+.+++|.++|++||+++|+||+|.++.+.+ .. ...
T Consensus 199 ----~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g-~~-~~~ 267 (433)
T 1z7d_A 199 ----DDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG-KL-LCV 267 (433)
T ss_dssp ----TCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-SS-SGG
T ss_pred ----CCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCC-cc-hhh
Confidence 278999998841 267665544336779975 688899999999999999999999998743333 21 121
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh--hhcCCCChHHHHHHHHhcCChhHHHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM--SSFGLVSSQTQHLIATMLSDDQFVEKFI 332 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~--~~~~~~s~~~q~~~~~~l~~~~~~~~~~ 332 (483)
+... ....+ .||||.+| +| +|+||+++ ++.+.+.+... ...+..+++++.++.++++... +
T Consensus 268 -~~~~-----~~~di---~t~sK~l~-~G~~~~G~v~~-~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~---~-- 331 (433)
T 1z7d_A 268 -HHYN-----VKPDV---ILLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI---N-- 331 (433)
T ss_dssp -GGGT-----CCCSE---EEECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH---H--
T ss_pred -HhcC-----CCCCE---EEECcccc-CCCCCeEEEEE-CHHHHhhhccccccccCCCCHHHHHHHHHHHHHHH---h--
Confidence 1111 11222 28999999 89 99999999 45555543321 1113467777777766664211 1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC--Cce---eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 333 AESAKRIAERHKAFTWGLSQV--GIG---CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 333 ~~~~~~l~~~~~~l~~~L~~~--gi~---~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
....++++++++++.+.|+++ +++ ..++ .|+|+|++++... . ...+++..|++ +||.+.|+ +
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~g~~~~i~~~~~~--~---~~~~~~~~l~~-~Gv~v~~~------~ 398 (433)
T 1z7d_A 332 EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLLCAIEFKNEL--V---NVLDICLKLKE-NGLITRDV------H 398 (433)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTEEEEEECTTT--C---CHHHHHHHHHH-TTEECCEE------T
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-eeeEEEEEEccCh--h---HHHHHHHHHHH-CCeEEecC------C
Confidence 123445556666666666553 332 2233 4568899887420 0 12367777775 59999985 2
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++|++++. .+++++++++++|++++++.
T Consensus 399 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 399 DKTIRLTPPLCITKEQLDECTEIIVKTVKFF 429 (433)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHHHH
Confidence 5689999875 59999999999999988764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=235.94 Aligned_cols=335 Identities=13% Similarity=0.075 Sum_probs=205.8
Q ss_pred CCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||++.+. ++++ ++.+.+++.+.. .....|+. ..++++++++++.+.++ +++
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~~---~~~~~~~la~~l~~~~~-----~~~ 109 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAM-------------EKGTSFGA---PCALENVLAEMVNDAVP-----SIE 109 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------TTCSCCSS---CCHHHHHHHHHHHHHST-----TCS
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHH-------------HhCCCcCC---CCHHHHHHHHHHHHhCC-----CCC
Confidence 45678988875 4443 455555554311 11112321 35677777777776543 578
Q ss_pred cEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------------------EEEEeecCCCCCc
Q 011570 121 RIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------------------QLVPVVCDSSNDF 179 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------------------~~~~v~~~~~~~~ 179 (483)
+|++|+|+++++..++.... .+++.|++.+|+|+++...+....|. .++.++.+
T Consensus 110 ~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 184 (427)
T 3fq8_A 110 MVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN----- 184 (427)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----
Confidence 99999999999999984321 23578999999997654332221111 12222221
Q ss_pred ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCC-HHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHh
Q 011570 180 KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD-RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEI 258 (483)
Q Consensus 180 ~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~-~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l 258 (483)
|+++|++++++. ..++++|+++.++|++|.+.+ .+.+++|.++|++||++||+||+|.++ ..+ .. .. ...
T Consensus 185 --d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g-~~-~~-~~~ 255 (427)
T 3fq8_A 185 --DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA-YG-GV-QEK 255 (427)
T ss_dssp --CHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB-TT-HH-HHH
T ss_pred --CHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC-cc-hh-hHh
Confidence 789999998752 225666666666778887665 566999999999999999999999975 333 21 12 222
Q ss_pred hhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-----hcCCCChHHHHHHHHhcC---ChhHHHH
Q 011570 259 IDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-----SFGLVSSQTQHLIATMLS---DDQFVEK 330 (483)
Q Consensus 259 ~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-----~~~~~s~~~q~~~~~~l~---~~~~~~~ 330 (483)
.. .... +.||||++| +|+|+||+++ ++.+.+.+.... ..+..+++++.++.++++ +.++ .+
T Consensus 256 ~~-----~~~d---i~t~sK~~~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~-~~ 324 (427)
T 3fq8_A 256 FG-----VTPD---LTTLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGT-YE 324 (427)
T ss_dssp TT-----CCCS---EEEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTH-HH
T ss_pred cC-----CCCC---hhhhhhhhh-CCcceEEEEE-cHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCH-HH
Confidence 11 1112 358999999 8999999998 566665544311 123457788877776663 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhc-------cChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKE-------QTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~-------~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
++.+.. ...++.+.+.+.+.++....+..|+++|++++..... .......+++..+++ +||.++|+..
T Consensus 325 ~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~~~- 399 (427)
T 3fq8_A 325 YLDQIT---KRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPSQF- 399 (427)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSSTT-
T ss_pred HHHHHH---HHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecCCC-
Confidence 222222 2223333333334455444445567889988642100 011123467777775 5999998752
Q ss_pred CCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 404 HCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 404 ~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
.++|+++. .+++++++++++|++++++
T Consensus 400 -----~r~~~~~~-~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 400 -----EAGFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp -----SCEECCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEeeCc-CCHHHHHHHHHHHHHHHHh
Confidence 24555544 5999999999999998864
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=227.07 Aligned_cols=304 Identities=13% Similarity=0.148 Sum_probs=205.6
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.|++..|..++++++.+.+.+.+| .+ ++++++++++++..++.++ +++||+|+++.|+|..+...+... |.+
T Consensus 33 ~~~~~~g~~~l~~~l~~~la~~~g----~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~ 105 (418)
T 2c81_A 33 ISGYWTGEESMERKFAKAFADFNG----VP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNV-NAL 105 (418)
T ss_dssp TTSBCCSSCCHHHHHHHHHHHHHT----CS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred ccCcccCCHHHHHHHHHHHHHHhC----CC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHc-CCE
Confidence 376666755555555555554444 22 5666777789999999999 899999999999999999988875 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-c
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-F 246 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~ 246 (483)
++.+++++ ++|.+|++.|++++++ ++++|+++ ||||...+ +++|.++|+++|++||+||+|..+. +
T Consensus 106 ~~~~~~~~-~~~~~d~~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~ 172 (418)
T 2c81_A 106 PVFVDVEA-DTYCIDPQLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQEHNLFVIEDCAQSHGSVW 172 (418)
T ss_dssp EEEECBCT-TTCSBCHHHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred EEEEecCC-CCCCcCHHHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHHHCCCEEEEECcccccCcc
Confidence 99999874 3678999999988753 68888764 58999876 8888999999999999999998764 4
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhcCC------------CC-
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL------------VS- 311 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~------------~s- 311 (483)
.. .. +..+ . .+++.|| ||.+|. | |+||++++++.+.+.+......+. ..
T Consensus 173 ~~-~~---~~~~---------~-~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (418)
T 2c81_A 173 NN-QR---AGTI---------G-DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQ 236 (418)
T ss_dssp TT-EE---TTSS---------S-SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBS
T ss_pred CC-Ee---cccc---------c-ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhh
Confidence 32 11 1111 1 2566788 999985 8 999999966666665554322110 00
Q ss_pred --------------hHHHHHHH-HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee-cCCc-eEEEe----ee
Q 011570 312 --------------SQTQHLIA-TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL-KSNA-GLFLW----MD 369 (483)
Q Consensus 312 --------------~~~q~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~-~~~~-g~f~~----~~ 369 (483)
...+.++. ..+. .+++..++.++.++++.+.|.++ |+++. ++.+ +.+.| +.
T Consensus 237 ~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~ 309 (418)
T 2c81_A 237 LVKKGDIQGSNYCLSEFQSAILLDQLQ-------ELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFR 309 (418)
T ss_dssp EEECCSSCCCBCCCCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEE
T ss_pred ccccccccCcCCCcCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEE
Confidence 11122221 1111 13344455566678888899887 88876 4555 33333 66
Q ss_pred cCchhhccChHHHHHHHHHHHHhcCeE---eeCCCCCCC---------------------------CC-------CCEEE
Q 011570 370 LHHLLKEQTYEAEMALWRVIINEVKLN---VSPGSSFHC---------------------------PN-------PGWFR 412 (483)
Q Consensus 370 l~~~~~~~~~~~~~~~~~~Ll~~~gV~---v~pg~~f~~---------------------------~~-------~~~iR 412 (483)
++..... . .+..++.+.|.+++||. +++|..... .- .+.+|
T Consensus 310 ~~~~~~~-~-~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 387 (418)
T 2c81_A 310 FDPVKFG-G-LNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIV 387 (418)
T ss_dssp ECGGGTT-T-CCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEE
T ss_pred Ecccccc-c-cCHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEE
Confidence 6531000 0 01236777777655999 888752110 00 14899
Q ss_pred EEecc-C-CHHHHHHHHHHHHHHHHHh
Q 011570 413 VCFAN-M-DDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 413 is~~~-~-~~e~l~~~l~~L~~~l~~~ 437 (483)
|++.. . ++++++.+++.|++++++.
T Consensus 388 l~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 388 IHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp EEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 99954 6 8999999999999987653
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=222.56 Aligned_cols=290 Identities=10% Similarity=0.079 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhhcCcEEE
Q 011570 93 YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWRTGVQLV 169 (483)
Q Consensus 93 ~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~ 169 (483)
.....++++++|++++ .+ ++++|+|+++++..++.++ +++||+|+++.|+|+.+...+... |++++
T Consensus 31 ~~~~~~l~~~la~~~~--------~~--~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-g~~~~ 99 (375)
T 2fnu_A 31 GKRSLLFEEALCEFLG--------VK--HALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPV 99 (375)
T ss_dssp SHHHHHHHHHHHHHHT--------CS--EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEE
T ss_pred ChHHHHHHHHHHHHhC--------CC--eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHC-CCEEE
Confidence 3457899999999986 22 9999999999999999999 899999999999999999988875 99999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.+++++++ .+|++.|++++.+ ++++|++++| ||.+.+ +++|.++|+++|++||+||+|....+..
T Consensus 100 ~~~~~~~~--~~d~~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~~- 164 (375)
T 2fnu_A 100 FAGIKNDG--NIDELALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ- 164 (375)
T ss_dssp ECCBCTTS--SBCGGGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET-
T ss_pred EeccCCCC--CCCHHHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHHHHcCCEEEEECccccCCeEC-
Confidence 99987543 7899999887753 7888888877 999998 7888889999999999999997532211
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCc--cccCCCCceEEEEEe-cChHHHHHHHHhhhcC------------------
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLS--KDMGFPGFRVGIIYS-YNDQVVSCARKMSSFG------------------ 308 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~~GlRiG~li~-~~~~l~~~~~~~~~~~------------------ 308 (483)
. .. + . ... .+++.||| |.+|. | +|++++ +++.+.+.+......+
T Consensus 165 ~--~~---~-~-----~~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T 2fnu_A 165 N--KK---V-G-----GFA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNF 229 (375)
T ss_dssp T--EE---T-T-----SSS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBC
T ss_pred C--ee---c-c-----ccC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccC
Confidence 1 11 1 1 112 36778888 99974 7 688877 4466666555433211
Q ss_pred CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC-----CceEEEeeecCchhhccChHHH
Q 011570 309 LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS-----NAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 309 ~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~-----~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
..+.+...+....+ . ++++..++++++++++.+.|+++ |+++..+ .+++++|+.++... ....
T Consensus 230 ~~~~~~~a~~~~~~---~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 298 (375)
T 2fnu_A 230 RLNEIQSALGLSQL---K----KAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKF----FTCK 298 (375)
T ss_dssp CCCHHHHHHHHHHH---T----THHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGG----GGGH
T ss_pred CCCHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccc----cchH
Confidence 12222222211111 1 24455667788889999999987 7877654 12345577776320 0013
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCC---------------------CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCP---------------------NPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~---------------------~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.++.+.|. ++||.++.+ |.+. ..+++||+++. .++++++.++++|++++++.
T Consensus 299 ~~l~~~L~-~~gi~v~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 299 KLILESLH-KRGILAQVH--YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HHHHHHHH-HTTEECBCC--CCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCCcccc--ccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 36777775 569999832 2110 12689999975 48999999999999988764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.1e-25 Score=224.10 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=194.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~v 171 (483)
..++++.+|++++ . .+.|++++|+ +++..++.+++++||+|+++.|+|+.+... ++. .|++++.+
T Consensus 116 ~~~l~~~lA~l~g--------~-~~~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~v 184 (445)
T 1qgn_A 116 TVVLEEKISALEG--------A-ESTLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPK-MGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHT--------C-SEEEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEE
T ss_pred HHHHHHHHHHHhC--------C-CcEEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHH-cCCEEEEe
Confidence 4588888888875 2 2556666665 999999999999999999999999987764 334 49999998
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCce-eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRI-KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~-~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+.+ |++.|++++++ ++ ++|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+. .
T Consensus 185 ~~~-------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~--~ 246 (445)
T 1qgn_A 185 DPA-------DVGALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ--K 246 (445)
T ss_dssp CSS-------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C
T ss_pred CCC-------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C
Confidence 753 78999999975 67 99999999999999998 788899999999999999999754221 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhh-hcCC-CChHHHHHHHHhcCChhH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMS-SFGL-VSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~-~~~~-~s~~~q~~~~~~l~~~~~ 327 (483)
+ + ..+..++++|+||.+|..| +++||++++ +.+.+.+.... .++. .+++...++...++.
T Consensus 247 ---~---~-------~~g~Div~~S~sK~~gg~gd~~~G~l~~~-~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~--- 309 (445)
T 1qgn_A 247 ---A---L-------ALGADLVLHSATKFLGGHNDVLAGCISGP-LKLVSEIRNLHHILGGALNPNAAYLIIRGMKT--- 309 (445)
T ss_dssp ---T---T-------TTTCSEEEECTTTTTTCSSSCCCEEEEEC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG---
T ss_pred ---c---c-------ccCCEEEEECCcccccccccceEEEEEEC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHH---
Confidence 1 1 1244578999999998554 479999994 55555544332 2333 344443444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-Cc-eeecC----------------CceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV-GI-GCLKS----------------NAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~-gi-~~~~~----------------~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
+..+.++..+++..+.+.|+++ ++ .+..| ..|.++++.++... .....+...+
T Consensus 310 ----l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-----~~~~~~l~~l 380 (445)
T 1qgn_A 310 ----LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-----LTTAKFVDAL 380 (445)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-----HHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-----HHHHHHHHhC
Confidence 2333344556677788888876 45 34333 13557788887411 1112333332
Q ss_pred HHhcCeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
+..++.++.|..+.. ..++.||||++ .|+++.+++.|++++++
T Consensus 381 -~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG---~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 381 -KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG---VEDFDDLKADILQALDS 444 (445)
T ss_dssp -SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC---SSCHHHHHHHHHHHHHH
T ss_pred -CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHHHhh
Confidence 123777777765421 12479999998 25789999999888764
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=229.20 Aligned_cols=350 Identities=10% Similarity=0.027 Sum_probs=224.9
Q ss_pred CCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||+..+ .+.++ ++.+.+++.+. +.....|....+..++++++++++.+.++ .+.+
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~-------------l~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~ 115 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQ-------------AMVLPYASPWYMATSPAARLAEKIATLTP----GDLN 115 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHH-------------HHHCCCCCTTTCBCHHHHHHHHHHHTTSS----TTCC
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHH-------------HHhccCcccCccCCHHHHHHHHHHHhcCC----CCcC
Confidence 4567888877 44453 45555555431 01111222224567889999999987654 4567
Q ss_pred cEEEeCChhHHHHHHHHHhcC--------CCCeEEEeCCCCcChHHHHhhhcC--------------cEEEEeecCCCCC
Q 011570 121 RIVMSGGATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDRDLRWRTG--------------VQLVPVVCDSSND 178 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~~G--------------~~~~~v~~~~~~~ 178 (483)
+|++++|+++++..++.++.. .++.|++.+|+|.++........| ...++.|....+
T Consensus 116 ~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 194 (476)
T 3i5t_A 116 RIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA- 194 (476)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-
Confidence 999999999999999988753 357999999999887655443212 223333322111
Q ss_pred cccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 179 FKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 179 ~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
+..+ +++|++.+.+.. ..++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|.++...+
T Consensus 195 ~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G- 271 (476)
T 3i5t_A 195 GNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG- 271 (476)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS-
T ss_pred CCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccc-
Confidence 2222 778888886421 125677777777888886 7899999999999999999999999999854444
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-------h--hcCCCChHHHHHHH
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-------S--SFGLVSSQTQHLIA 319 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-------~--~~~~~s~~~q~~~~ 319 (483)
. +.+...... ..+.++ +|||++| .| +|+|++++ ++.+.+.+... . ..+..++++++++.
T Consensus 272 ~-~~~~~~~~~-----v~pdi~---t~sK~l~-~G~~plg~v~~-~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~ 340 (476)
T 3i5t_A 272 E-WFASEKVFG-----VVPDII---TFAKGVT-SGYVPLGGLAI-SEAVLARISGENAKGSWFTNGYTYSNQPVACAAAL 340 (476)
T ss_dssp S-SCHHHHTTC-----CCCSEE---EECGGGG-TTSSCCEEEEE-CHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHH
T ss_pred C-ceeeecccC-----CCcchh---hhhhhhc-CCCcCeEEEEE-CHHHHHHHhcCCcccccccccCCCCcCHHHHHHHH
Confidence 2 223321211 112222 7899998 69 99999999 66776665432 1 12446788888887
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhcc-Ch----HHHHHHHHHHH
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQ-TY----EAEMALWRVII 390 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~-~~----~~~~~~~~~Ll 390 (483)
++|+... + +...+.++++.+++.+.|+++ .+....+.| .|+++++....... .+ .....++..++
T Consensus 341 aaL~~~~---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (476)
T 3i5t_A 341 ANIELME---R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVG-LVGCVQCLLDPTRADGTAEDKAFTLKIDERCF 414 (476)
T ss_dssp HHHHHHH---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEET-TEEEEEECCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceeEEEEecCccccccccchhHHHHHHHHHHH
Confidence 7775311 1 223344455555566655543 244445555 57778776421110 00 01336677777
Q ss_pred HhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 391 NEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 391 ~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+ +||.++|. + +++||+... .+++++++++++|++++++..++
T Consensus 415 ~-~Gv~v~~~------g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 415 E-LGLIVRPL------G-DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp H-TTEECEEE------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-CCCEEEec------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5 59999983 1 689999654 59999999999999999876543
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=233.98 Aligned_cols=319 Identities=16% Similarity=0.204 Sum_probs=207.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC-----C----CeEEEeCCCCcChHHH
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP-----G----DAFLVPTPYYPGFDRD 159 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~-----g----d~Vlv~~P~y~~~~~~ 159 (483)
.|+...+..+|+++++++++ .+++++|+|+++++..++.+++++ | |+|++..+.|..+...
T Consensus 69 ~y~~~~~~~~l~~~la~~~~----------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~ 138 (467)
T 2oqx_A 69 AYSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred eeccCchhHHHHHHHHHHhC----------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhh
Confidence 57777778999999999975 368999999999999999999888 8 9988875444444444
Q ss_pred HhhhcCcEEEEeec----CCC----CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhh
Q 011570 160 LRWRTGVQLVPVVC----DSS----NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINE 230 (483)
Q Consensus 160 ~~~~~G~~~~~v~~----~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~ 230 (483)
.... |..++.... +.. .++.+|+++|++++.+.. ..++++|++++|+||| |.+++.+++++|+++|++
T Consensus 139 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~ 215 (467)
T 2oqx_A 139 SQIN-GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHT-TCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred hhcc-CcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 4443 777665422 111 245689999999997521 1268999999999998 999999999999999999
Q ss_pred cCcEEEEcccccc----------CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC-CceEEEEEecCh---H
Q 011570 231 KNIHLVCDEIYAA----------TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP-GFRVGIIYSYND---Q 296 (483)
Q Consensus 231 ~~~~iI~Deay~~----------~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~-GlRiG~li~~~~---~ 296 (483)
||++||+|+++.. ..+.+ . +...+...+. ...+ +++.|+||.+|++ | ||++++++ .
T Consensus 216 ~gi~li~D~a~~~e~~~~~~~~~~~~~g-~---~~~~~~~~~~-~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~ 285 (467)
T 2oqx_A 216 YDIPVVMDSARFAENAYFIKQREAEYKD-W---TIEQITRETY-KYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFD 285 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTT-S---CHHHHHHHHG-GGCS--EEEEESSSTTCCSSC---EEEEECSGGGHH
T ss_pred cCCEEEEEchhhhhhhhhcccccccccC-c---cHHHHhhhhh-ccCC--eEEEecccccCCCCc---eEEEecChhHHH
Confidence 9999999965532 12332 2 2333220000 0123 3467999999877 5 88888555 2
Q ss_pred HHHHHHHhh--h-----cCCCChHHHHHHHHhcCChhHHHHHHH-HHHHHHHHHHHHHHHhhhcCCceeecCCceEEEee
Q 011570 297 VVSCARKMS--S-----FGLVSSQTQHLIATMLSDDQFVEKFIA-ESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWM 368 (483)
Q Consensus 297 l~~~~~~~~--~-----~~~~s~~~q~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~ 368 (483)
....++... . ++..+.....++...+ ..+++ +..+...++++++.+.|.+.|+++. +.+++++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~ 358 (467)
T 2oqx_A 286 VYTECRTLCVVQEGFPTYGGLEGGAMERLAVGL------YDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQ-QAGGHAAFV 358 (467)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHHHHHHHTTCCEE-EECSSCEEE
T ss_pred HHHHHHHhhhccCCcccccchhhhHHHHHHHhh------HhhhhHHHHHHHHHHHHHHHHHHHHCCCeee-cCCceEEEE
Confidence 223332221 1 1112222222221111 11111 2233445677888888888788877 777889999
Q ss_pred ecCc---hhhccChHHHHHHHHHHHHhcCeEeeCCCCC--CC---------CCCCEEEEEecc--CCHHHHHHHHHHHHH
Q 011570 369 DLHH---LLKEQTYEAEMALWRVIINEVKLNVSPGSSF--HC---------PNPGWFRVCFAN--MDDRTMEIALSRITS 432 (483)
Q Consensus 369 ~l~~---~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f--~~---------~~~~~iRis~~~--~~~e~l~~~l~~L~~ 432 (483)
+++. ..+...+ ....++..|+.++||.+.|+..| +. ...+++||+++. .+++++++++++|++
T Consensus 359 ~~~~~~~~~~~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~ 437 (467)
T 2oqx_A 359 DAGKLLPHIPADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437 (467)
T ss_dssp EHHHHSTTSCGGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHH
T ss_pred echhhcccCCcccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 8853 1111111 12356777756779999985432 11 013789999974 589999999999999
Q ss_pred HHHHhh
Q 011570 433 FMLKNV 438 (483)
Q Consensus 433 ~l~~~~ 438 (483)
++++..
T Consensus 438 ~l~~~~ 443 (467)
T 2oqx_A 438 VKENAA 443 (467)
T ss_dssp HHHSGG
T ss_pred HHhhhh
Confidence 987653
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=234.92 Aligned_cols=291 Identities=10% Similarity=0.072 Sum_probs=203.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCe---EEEeCCCCcChHH----HHhhhcCcEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDA---FLVPTPYYPGFDR----DLRWRTGVQLV 169 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~---Vlv~~P~y~~~~~----~~~~~~G~~~~ 169 (483)
.++++.++++++ .++++|++|+|++++++.++.+++++||. |+++.|+|++... .++.. |++++
T Consensus 114 ~~l~~~la~~~g--------~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~-G~~~~ 184 (465)
T 3e9k_A 114 ESIVGLMKDIVG--------ANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH-GLNIE 184 (465)
T ss_dssp HHHHGGGHHHHT--------CCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT-TCCHH
T ss_pred HHHHHHHHHHcC--------CCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc-CCcce
Confidence 557777777765 56889999999999999999999887765 9999999987443 44444 87752
Q ss_pred -----EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 170 -----PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 170 -----~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
.++. ++++.+|+++++++|+++ ++++++|++++||||||.+++ +++|.++|+++|++||+|++|+.
T Consensus 185 ~~~v~~~~~--~~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~- 255 (465)
T 3e9k_A 185 ESMRMIKPR--EGEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAV- 255 (465)
T ss_dssp HHEEEECCC--TTCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT-
T ss_pred eeeEEEecC--CCCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhc-
Confidence 2233 345789999999999753 237899999999999999999 78888899999999999999973
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH-------------Hhh------
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-------------KMS------ 305 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~-------------~~~------ 305 (483)
.. .+ .++... +..++++|++|.++.+..++|++++.++ +.+.+. .+.
T Consensus 256 --g~-~~-~~~~~~---------~~D~~~~s~~K~l~~gp~~~g~l~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 321 (465)
T 3e9k_A 256 --GN-VE-LYLHDW---------GVDFACWCSYKYLNAGAGGIAGAFIHEK-HAHTIKPALVGWFGHELSTRFKMDNKLQ 321 (465)
T ss_dssp --TT-SC-CCHHHH---------TCCEEEECSSSTTCCCTTCCCEEEECGG-GTTTSCCSSCCGGGBCHHHHTTCCSCCC
T ss_pred --CC-cC-Cchhhc---------CCCEEEECcccccccCCCceEEEEEcHH-HHhhcCCcccCccCCCCCcccccCCCcC
Confidence 22 11 233332 3457789999999323337899998543 322111 000
Q ss_pred ------h--cCCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhc-----------CCceeecCC----
Q 011570 306 ------S--FGLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQ-----------VGIGCLKSN---- 361 (483)
Q Consensus 306 ------~--~~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~-----------~gi~~~~~~---- 361 (483)
. .++.+.+...++.+.+.. +.+. +++.++++.++++++.+.|++ .|+++..|.
T Consensus 322 ~~~~~~~~~~gt~~~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~ 398 (465)
T 3e9k_A 322 LIPGVCGFRISNPPILLVCSLHASLEI---FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEE 398 (465)
T ss_dssp BCSSGGGGCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGG
T ss_pred cCCChHHhccCCccHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhh
Confidence 0 013344444444444432 2222 567777888888889888877 578887665
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe-cc-CCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF-AN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.|.+++++++. +.. ++.+.|. ++||.+..+ .++++|+++ .. .+++++++++++|++++++.
T Consensus 399 ~g~~~~~~~~~--~~~------~l~~~L~-~~Gi~v~~~------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 399 RGCQLTITFSV--PNK------DVFQELE-KRGVVCDKR------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp BCSCEEEEECC--TTC------CHHHHHH-TTTEECEEE------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccEEEEEecC--CHH------HHHHHHH-HCCEEEecC------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 35688888862 222 4566666 459998732 357999998 33 69999999999999988654
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=229.85 Aligned_cols=333 Identities=11% Similarity=0.047 Sum_probs=202.4
Q ss_pred CCCcccccchh--hhh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||++.+. +++ +++.+.+++.+... ....| .+..++++++++++.+.++ +++
T Consensus 56 g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~-------------~~~~~---~~~~~~~~~la~~l~~~~~-----~~~ 114 (453)
T 2cy8_A 56 GNVYLDFFGGHGALVLGHGHPRVNAAIAEALS-------------HGVQY---AASHPLEVRWAERIVAAFP-----SIR 114 (453)
T ss_dssp CCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT-------------TTCSS---CSSCHHHHHHHHHHHHHCT-----TCS
T ss_pred CCEEEECcccHhhcccCCCCHHHHHHHHHHHH-------------hCCCC---CCCCHHHHHHHHHHHhhCC-----CCC
Confidence 34678888775 333 34555555543111 11122 2357899999999987642 578
Q ss_pred cEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhhc----------CcE------EEEeecCCCCCccc
Q 011570 121 RIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWRT----------GVQ------LVPVVCDSSNDFKV 181 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~~----------G~~------~~~v~~~~~~~~~~ 181 (483)
+|++|+|+++++..++.+ +.++ +.|++.+|+|+++...+.... |.. ++.++. .
T Consensus 115 ~v~~~~gg~eA~~~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~ 186 (453)
T 2cy8_A 115 KLRFTGSGTETTLLALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------D 186 (453)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------T
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------C
Confidence 999999999999999987 6655 678888899987654332111 221 222221 3
Q ss_pred CHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh
Q 011570 182 TMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII 259 (483)
Q Consensus 182 d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~ 259 (483)
|++.|++++++. +.++++ ++++| +||||.++ +.+++++|.++|++||+++|+||+|.++ +.+ .. .....+
T Consensus 187 d~~~le~~l~~~---~~~~~~-vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g-~~-~~~~~~- 258 (453)
T 2cy8_A 187 DIEGMREVFANH---GSDIAA-FIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG-NH-GMQALL- 258 (453)
T ss_dssp CHHHHHHHHHHH---GGGEEE-EEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTC-TT-HHHHHH-
T ss_pred CHHHHHHHHHhc---CCCEEE-EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccC-ch-hhhHHh-
Confidence 899999998752 125555 55666 57799765 7999999999999999999999999875 333 21 222112
Q ss_pred hhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-------hhhcCCCChHHHHHHHHhcCC-hhHHHHH
Q 011570 260 DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-------MSSFGLVSSQTQHLIATMLSD-DQFVEKF 331 (483)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-------~~~~~~~s~~~q~~~~~~l~~-~~~~~~~ 331 (483)
. .... +.||||.++ +|+|+||++++ +.+.+.+.. ....+..+++++.++.++++. .
T Consensus 259 ~-----~~~d---i~s~sK~l~-~G~~~G~v~~~-~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------ 322 (453)
T 2cy8_A 259 D-----VQPD---LTCLAKASA-GGLPGGILGGR-EDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------ 322 (453)
T ss_dssp T-----CCCS---EEEEEGGGG-TTSSCEEEEEC-HHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------
T ss_pred C-----CCCc---EEEEChhhh-CCcceEEEech-HHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------
Confidence 1 1122 238999998 69999999994 555554322 111234677888777666543 1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCc-----h--hhc------cChHHHHHHHHHHHHhcC
Q 011570 332 IAESAKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHH-----L--LKE------QTYEAEMALWRVIINEVK 394 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~-----~--~~~------~~~~~~~~~~~~Ll~~~g 394 (483)
.+...++++++++++.+.|++ .++....+..|.|+|++++. . ... .......+++..|++ +|
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~G 401 (453)
T 2cy8_A 323 EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EG 401 (453)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHH-CC
Confidence 011223344444555544443 35433233345688999874 1 000 011123467788875 59
Q ss_pred eEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhhc
Q 011570 395 LNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 395 V~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
|.+.|+ +.+|+++. .+++++++++++|++++++..+.
T Consensus 402 v~v~~~--------~~~~l~~~-~t~~~i~~~l~~l~~~l~~~~~~ 438 (453)
T 2cy8_A 402 VDIGGR--------GSVFLSAQ-HEREHVEHLVTTFDRVLDRLADE 438 (453)
T ss_dssp EECBTT--------TEEECCTT-CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEeCC--------CCEEeecc-CCHHHHHHHHHHHHHHHHHHHhC
Confidence 999653 24777654 69999999999999999876543
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=221.62 Aligned_cols=279 Identities=16% Similarity=0.191 Sum_probs=191.1
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~ 170 (483)
...+|++.+|++++ . +++++++++++++..++.+++++||+|+++.|+|+++...+ +.. |.+++.
T Consensus 60 ~~~~l~~~la~~~g--------~--~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~-g~~~~~ 128 (389)
T 3acz_A 60 TVEQFEEMVCSIEG--------A--AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRF-GIEVDL 128 (389)
T ss_dssp HHHHHHHHHHHHHT--------C--SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHT-TCEEEE
T ss_pred HHHHHHHHHHHHhC--------C--CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHc-CCEEEE
Confidence 35689999999875 2 26666777789999999999999999999999999876653 444 999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++. .|++.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. .
T Consensus 129 v~~-------~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~--~ 190 (389)
T 3acz_A 129 IDT-------SDVEKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL--K 190 (389)
T ss_dssp ECT-------TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC--C
T ss_pred ECC-------CCHHHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc--C
Confidence 885 378899888753 7899999999999999998 888899999999999999999865332 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhH
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~ 327 (483)
+ + ..+.++++.|+||.+|.+|.|+ ||++++++.+.+.+..... + ...++..+.++...+....
T Consensus 191 ~---~----------~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~- 256 (389)
T 3acz_A 191 P---L----------ELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP- 256 (389)
T ss_dssp G---G----------GTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH-
T ss_pred c---c----------ccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH-
Confidence 1 1 1245688999999999999998 9999965356555544332 3 3345566665555565421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC---------------CceeecC---CceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV---------------GIGCLKS---NAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~---------------gi~~~~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
.+.+...++...+.+.|+++ ++.+..+ ..|.++.+.++. . +....+
T Consensus 257 ------~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~--------~~~~~~ 320 (389)
T 3acz_A 257 ------IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--F--------EAAKKL 320 (389)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--H--------HHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--H--------HHHHHH
Confidence 12223334444455555443 1111111 123466677753 1 223455
Q ss_pred HHhcCeEeeC---C------CCCCC---------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSP---G------SSFHC---------------PNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 390 l~~~gV~v~p---g------~~f~~---------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
+++.||.+++ | ..+.. ..++++|||++. ++.++.++.|.++++
T Consensus 321 l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 321 MEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp HTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred HHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 6677888776 3 22211 125799999984 356777777777664
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=220.63 Aligned_cols=284 Identities=17% Similarity=0.157 Sum_probs=193.3
Q ss_pred cCCCC--CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---h
Q 011570 89 IFQDY--HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---R 163 (483)
Q Consensus 89 ~Y~~~--~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~ 163 (483)
.|+.. ....++++.++++++ .+++++|+|+++++..++.+++++||+|+++.|+|......+.. .
T Consensus 49 ~y~~~~~~~~~~l~~~la~~~g----------~~~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 49 VYARQKDPTAKALEERLKALEG----------ALEAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp SBTTTCCHHHHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred CcCCCCChHHHHHHHHHHHHhC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 45543 346788888888875 24899999999999999999999999999999999876665422 1
Q ss_pred cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc
Q 011570 164 TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA 243 (483)
Q Consensus 164 ~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~ 243 (483)
.|.+++.++. |+++|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+||+|..
T Consensus 119 ~g~~~~~~~~--------~~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~ 181 (412)
T 2cb1_A 119 MGVTVRYVDP--------EPEAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGA 181 (412)
T ss_dssp TTCEEEEECS--------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGT
T ss_pred cCCEEEEECC--------CHHHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcc
Confidence 4899988874 37888888753 7899999999999999998 88899999999999999999986
Q ss_pred CccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecC-h--------------------------H
Q 011570 244 TVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYN-D--------------------------Q 296 (483)
Q Consensus 244 ~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~-~--------------------------~ 296 (483)
..+.. . +. ..+.++++.|+||.++.+|.|+|++++.+ . .
T Consensus 182 ~~~~~-~---~~----------~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 247 (412)
T 2cb1_A 182 AGALC-R---PL----------AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARC 247 (412)
T ss_dssp TTTSC-C---GG----------GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGH
T ss_pred ccccC-C---cc----------ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHH
Confidence 41211 1 11 12466889999999988999999988755 2 2
Q ss_pred HHHHHHHhh--hcC-CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee-cC-----------
Q 011570 297 VVSCARKMS--SFG-LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL-KS----------- 360 (483)
Q Consensus 297 l~~~~~~~~--~~~-~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~-~~----------- 360 (483)
+.+.++... .++ ..++....++...+.. +....++..++.+++.+.|.+. ++... .|
T Consensus 248 ~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~ 320 (412)
T 2cb1_A 248 FPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNA 320 (412)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHH
T ss_pred HHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHH
Confidence 333333322 122 1233333332222321 2233334456677888888876 77633 22
Q ss_pred -----CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCC---------CCCC---------------CCCCEE
Q 011570 361 -----NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGS---------SFHC---------------PNPGWF 411 (483)
Q Consensus 361 -----~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~---------~f~~---------------~~~~~i 411 (483)
..+.++.+.+ . +. +....++++.||.+ .++ .+.. -.++.+
T Consensus 321 ~~~~~~~~~iv~~~~-~--~~-------~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 389 (412)
T 2cb1_A 321 RKYLASGGPILTLDL-G--DL-------ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLV 389 (412)
T ss_dssp HHHCSSSCSEEEEEC-S--SH-------HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEE
T ss_pred HHhCCCCceEEEEEe-C--CH-------HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeE
Confidence 2344666777 3 11 22344566779998 774 2210 015789
Q ss_pred EEEecc-CCHHHHHHHHHHHH
Q 011570 412 RVCFAN-MDDRTMEIALSRIT 431 (483)
Q Consensus 412 Ris~~~-~~~e~l~~~l~~L~ 431 (483)
|+|++. .++++++.++++|+
T Consensus 390 R~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 390 RVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp EEECCSSCHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHHh
Confidence 999986 36667777777665
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-25 Score=226.75 Aligned_cols=328 Identities=13% Similarity=0.091 Sum_probs=205.8
Q ss_pred CCCcccccchh--hhh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||++.+. +++ +++.+.+++.+.. .....|+ +..++++++++.+.+.++ .++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~-------------~~~~~~~---~~~~~~~~l~~~l~~~~~-----~~~ 109 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETL-------------ERGLTFG---APSPLEVALAKKVKRAYP-----FVD 109 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHH-------------HTCSCCS---SCCHHHHHHHHHHHHHCT-----TCC
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHH-------------HhCCCCC---CCCHHHHHHHHHHHHhCC-----CCC
Confidence 45578998775 444 3455555554311 0111121 235566666666665432 578
Q ss_pred cEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhhh-------------cCc------EEEEeecCCCCC
Q 011570 121 RIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRWR-------------TGV------QLVPVVCDSSND 178 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~~-------------~G~------~~~~v~~~~~~~ 178 (483)
+|++|+|+++++..++.+ +.+ ++.|++.+|+|+++...+... .|+ +++.++.
T Consensus 110 ~v~~~~~g~ea~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 183 (424)
T 2e7u_A 110 LVRFVNSGTEATMSALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY----- 183 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----
Confidence 999999999999999886 554 578999999998755432111 122 2444442
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCC-CcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNPSNP-LGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NP-tG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
.|++.|++++++. +.+++ +++++|+|| ||.++ +.+++++|.++ ++||+++|+||+|.++ ..+ .. ...
T Consensus 184 --~d~~~le~~l~~~---~~~~~-~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g-~~--~~~ 252 (424)
T 2e7u_A 184 --NDPEGLREVLKRR---GEEIA-AIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLA-FG--GAT 252 (424)
T ss_dssp --TCHHHHHHHHHHH---GGGEE-EEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSS-TT--HHH
T ss_pred --CCHHHHHHHHHhC---CCCEE-EEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccc-hh--HHH
Confidence 3789999988742 12444 566778665 89765 79999999999 9999999999999975 333 21 122
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-----hcCCCChHHHHHHHHhcCChhHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-----SFGLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
+... ....+ .||||++| +|+|+||+++ ++.+.+.+.... ..+..+++++.++.++++.. ++
T Consensus 253 ~~~~-----~~~di---~s~sK~l~-~G~~~G~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~---~~- 318 (424)
T 2e7u_A 253 ELLG-----LKPDL---VTLGKILG-GGLPAAAYAG-RREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELL---EE- 318 (424)
T ss_dssp HHHT-----CCCSE---EEECGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHH---HH-
T ss_pred HHhC-----CCcch---hhhhhhhh-CCcceEEEEE-cHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHH---Hh-
Confidence 2211 11222 39999999 6999999999 456655543311 12346778887777666421 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCcee-ecCCceEEEeeecCchh-h------ccChHHHHHHHHHHHHhcCeEeeC
Q 011570 332 IAESAKRIAERHKAFTWGLSQ----VGIGC-LKSNAGLFLWMDLHHLL-K------EQTYEAEMALWRVIINEVKLNVSP 399 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~----~gi~~-~~~~~g~f~~~~l~~~~-~------~~~~~~~~~~~~~Ll~~~gV~v~p 399 (483)
.++..++++++++++.+.|++ .++.. .++. |.|+|++++... . ........+++..|+ ++||.+.|
T Consensus 319 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~ 396 (424)
T 2e7u_A 319 NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPP 396 (424)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEec
Confidence 123344555555666666654 35533 3444 468999987410 0 000112346777777 57999998
Q ss_pred CCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 400 GSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 400 g~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
|.. ..+|+++. .+++++++++++|+++
T Consensus 397 ~~~------~~~~~~~~-~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 397 SNF------EAAFLSVA-HREEDVEKTLEALRKA 423 (424)
T ss_dssp SSS------SCEECCTT-CCHHHHHHHHHHHHHH
T ss_pred cCC------CceEeecc-CCHHHHHHHHHHHHHh
Confidence 752 24777754 6999999999999875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.7e-25 Score=226.89 Aligned_cols=348 Identities=10% Similarity=0.027 Sum_probs=215.6
Q ss_pred CCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccc-cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 45 PNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIA-IFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 45 ~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
...+||+..+ .+.++ ++.+.+++.+.. .... .|....+..+++.++++.+.+..+ .+.
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~-------------~~~~~~~~~~~~~~~~~~~lae~l~~~~~----~~~ 116 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQM-------------RELPYYNTFFKTTHVPAIALAQKLAELAP----GDL 116 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHH-------------HHCSCCCSSSSEECHHHHHHHHHHHHHSC----TTE
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHH-------------HhccccccccccCCHHHHHHHHHHHHhCC----CCC
Confidence 4567898877 45554 355555544310 0111 222223345666667777666543 456
Q ss_pred CcEEEeCChhHHHHHHHHHhcC--------CCCeEEEeCCCCcChHHHHhhhcCc-----------EEEEeecCC--C-C
Q 011570 120 DRIVMSGGATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDRDLRWRTGV-----------QLVPVVCDS--S-N 177 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~~G~-----------~~~~v~~~~--~-~ 177 (483)
++|++++|+++++..++.++.. +++.|++.+|+|.++........|. .+..++.+. . +
T Consensus 117 ~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~ 196 (472)
T 3hmu_A 117 NHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEG 196 (472)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHC
T ss_pred CEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCC
Confidence 7999999999999999988864 4689999999998876554443221 233444221 0 1
Q ss_pred CcccC--------HHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 178 DFKVT--------MEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 178 ~~~~d--------~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
++ .| ++.|++.+.+... .++++|++..++|++|.+. +.+.+++|.++|++||+++|+||+|.++...+
T Consensus 197 ~~-~~~~~~~~~~~~~le~~i~~~~~--~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G 273 (472)
T 3hmu_A 197 GD-MDPEEFGLARARELEEAILELGE--NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG 273 (472)
T ss_dssp TT-CCHHHHHHHHHHHHHHHHHHHCG--GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTS
T ss_pred cc-cCHHHHHHHHHHHHHHHHHhcCC--CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccC
Confidence 11 23 7788888864211 2455555555567777755 88899999999999999999999998854443
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh--h--hcCCCChHHHHHHHHhcCC
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--S--SFGLVSSQTQHLIATMLSD 324 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~--~--~~~~~s~~~q~~~~~~l~~ 324 (483)
. +...... . ....++ +|||++|.+|+|+||+++ ++.+.+.+... . ..+..++++++++.++|+.
T Consensus 274 -~-~~a~~~~-~-----v~pdi~---t~sK~l~gg~~plG~v~~-~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~ 341 (472)
T 3hmu_A 274 -N-WFGTQTM-G-----IRPHIM---TIAKGLSSGYAPIGGSIV-CDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRI 341 (472)
T ss_dssp -S-SCHHHHH-T-----CCCSEE---EECGGGTTTSSCCEEEEE-EHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred -c-cchhHHh-C-----CCCcee---eechhhhcCCcceEEEEE-CHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHH
Confidence 2 2232222 1 122332 789999855599999999 56666665211 1 1234678888888777752
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHhhhc---C-CceeecCCceEEEeeecCchhhcc-C-----hHHHHHHHHHHHHhc
Q 011570 325 DQFVEKFIAESAKRIA-ERHKAFTWGLSQ---V-GIGCLKSNAGLFLWMDLHHLLKEQ-T-----YEAEMALWRVIINEV 393 (483)
Q Consensus 325 ~~~~~~~~~~~~~~l~-~~~~~l~~~L~~---~-gi~~~~~~~g~f~~~~l~~~~~~~-~-----~~~~~~~~~~Ll~~~ 393 (483)
... +...+.++ ++.+++.+.|++ . .+....+.| .|+++++....... . ......++..+++ +
T Consensus 342 ~~~-----~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 414 (472)
T 3hmu_A 342 LEE-----ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVG-MMASIALTPNKASRAKFASEPGTIGYICRERCFA-N 414 (472)
T ss_dssp HHH-----TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEET-TEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-T
T ss_pred HHH-----hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC-ceEEEEEecCccccccccchhHHHHHHHHHHHHH-C
Confidence 110 12233334 444444444443 3 344455555 47777775321110 0 1113467777775 5
Q ss_pred CeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 394 KLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 394 gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
||.++|+. +++||+... .+++++++++++|++++++..
T Consensus 415 Gv~v~~~g-------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 415 NLIMRHVG-------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp TBCCEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecC-------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999862 689999654 599999999999999987754
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=223.56 Aligned_cols=282 Identities=15% Similarity=0.093 Sum_probs=187.8
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH----HhhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD----LRWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~----~~~~~G~~~~~ 170 (483)
+..++|+++|++++ .+ ++++++++++++..++. ++++||+|+++.|+|+..... ++. .|.+++.
T Consensus 56 ~~~~lr~~la~~~g--------~~--~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~-~G~~v~~ 123 (393)
T 1n8p_A 56 NRENLERAVAALEN--------AQ--YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANA-HGVETSF 123 (393)
T ss_dssp HHHHHHHHHHHHTT--------CS--EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTT-TCSCCEE
T ss_pred hHHHHHHHHHHHhC--------CC--cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEE
Confidence 46799999999976 12 55555666999999999 999999999999999865543 334 3889888
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc----CcEEEEccccccCcc
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK----NIHLVCDEIYAATVF 246 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~----~~~iI~Deay~~~~~ 246 (483)
++.+ | ++++++++ +++++|++++||||||.+++ +++|+++|+++ |+++|+||+|..+.+
T Consensus 124 v~~~-------d-~~l~~~i~------~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 124 TNDL-------L-NDLPQLIK------ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp ESSH-------H-HHHHHHSC------SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred eCCC-------h-HHHHHhcc------cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8753 6 77877774 37899999999999999998 88888899999 999999999986543
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLS 323 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~ 323 (483)
.. ...+ +.++++.|+||.+|.+|+|+ ||+++.++.+.+.+..... + ...++..+.++...+.
T Consensus 187 ~~------~~~~---------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 251 (393)
T 1n8p_A 187 SN------PLNF---------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK 251 (393)
T ss_dssp CC------GGGG---------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred CC------HHHc---------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence 21 1111 45688999999999999999 9999855666665544332 2 2345555554444444
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC--ce-eecC---------------C--c-eEEEeeecCchhhccChHHH
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVG--IG-CLKS---------------N--A-GLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g--i~-~~~~---------------~--~-g~f~~~~l~~~~~~~~~~~~ 382 (483)
. +....+...+++..+.+.|.+.+ +. +..| . . +..+++.++... .+.
T Consensus 252 ~-------~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-----~~~ 319 (393)
T 1n8p_A 252 T-------LHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGA-----EAA 319 (393)
T ss_dssp T-------HHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCH-----HHH
T ss_pred h-------HHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcH-----HHH
Confidence 3 23334445566666777776653 32 2111 1 1 457888887410 112
Q ss_pred HHHHHHHHHhcCeEeeCCC----------CCC-----------CCCCCEEEEEeccC-CHHHHHHHHHHHHHH
Q 011570 383 MALWRVIINEVKLNVSPGS----------SFH-----------CPNPGWFRVCFANM-DDRTMEIALSRITSF 433 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~----------~f~-----------~~~~~~iRis~~~~-~~e~l~~~l~~L~~~ 433 (483)
..+...+ +..++.+..|+ .+. ...++.||||++.. ++++++.+.++|+++
T Consensus 320 ~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 320 SKFASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQA 391 (393)
T ss_dssp HHHHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhhC-CcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 2333332 22345554442 221 01247899999873 556667766666543
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=217.23 Aligned_cols=302 Identities=13% Similarity=0.119 Sum_probs=205.3
Q ss_pred CCCCCC--cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 90 FQDYHG--LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 90 Y~~~~g--~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
|.+..| ..++|+++|++++ .++|++|+|+++++..++.++ +++||+|+++.|+|+.+...+... |+
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~----------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~-g~ 94 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KA 94 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TC
T ss_pred CccCCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHc-CC
Confidence 555557 8899999999986 268999999999999999999 999999999999999999988875 99
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc-cCc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA-ATV 245 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~-~~~ 245 (483)
+++.++++ .+|.+|++.|++++.+. ..++++|++++ |||...+ +++|.++|+++|++||+||+|. +..
T Consensus 95 ~~~~v~~~--~~~~~d~~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~ 163 (394)
T 1o69_A 95 KPVFIDCD--ETYNIDVDLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEICKENDIVLIEDAAEALGSF 163 (394)
T ss_dssp EEEEECBC--TTSSBCHHHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCE
T ss_pred EEEEEEeC--CCCCcCHHHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHHHHcCCEEEEECcCcccce
Confidence 99999987 36789999999998741 11578898885 8998766 8888888999999999999998 443
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCC----------------
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL---------------- 309 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~---------------- 309 (483)
+.+ ....+ + .+ +.+.||||..+++|.|+||++++++.+.+.+......+.
T Consensus 164 ~~~-~~~~~---~--------~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 229 (394)
T 1o69_A 164 YKN-KALGT---F--------GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYR 229 (394)
T ss_dssp ETT-EETTS---S--------SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCB
T ss_pred eCC-ccccc---c--------cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccC
Confidence 433 21111 1 12 345566544455678999999965676666655433221
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceE-EEeeecCchhh---------
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGL-FLWMDLHHLLK--------- 375 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~-f~~~~l~~~~~--------- 375 (483)
.+.....++...+ ++ +++..++++++++++.+.|.+. +++.++. +++ ++++.++....
T Consensus 230 ~~~~~aa~~l~~l---~~----l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 301 (394)
T 1o69_A 230 LSNVLGAIGVAQM---EV----LEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDI 301 (394)
T ss_dssp CCHHHHHHHHHHH---TT----HHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEE
T ss_pred cCHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccc
Confidence 1112211111112 22 3445667788888999999887 6665542 333 36677763100
Q ss_pred -----ccC-hHHHHHHHHHHHHhcCeEeeCCCCCCC-----CC----C---------CEEEEEecc-CCHHHHHHHHHHH
Q 011570 376 -----EQT-YEAEMALWRVIINEVKLNVSPGSSFHC-----PN----P---------GWFRVCFAN-MDDRTMEIALSRI 430 (483)
Q Consensus 376 -----~~~-~~~~~~~~~~Ll~~~gV~v~pg~~f~~-----~~----~---------~~iRis~~~-~~~e~l~~~l~~L 430 (483)
+.. -....++.+.|. ++||.+++|..+.. .. . ..+|+.... .++++++.++++|
T Consensus 302 ~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l 380 (394)
T 1o69_A 302 NISQKNITLHPKISKLIEDLK-NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLI 380 (394)
T ss_dssp ECCCCCCCCCHHHHHHHHHHH-HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHH-HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHH
Confidence 000 012336677665 56999999853210 00 0 234444433 6999999999999
Q ss_pred HHHHHH
Q 011570 431 TSFMLK 436 (483)
Q Consensus 431 ~~~l~~ 436 (483)
+++++.
T Consensus 381 ~~~~~~ 386 (394)
T 1o69_A 381 LKSIKA 386 (394)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 887643
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=224.72 Aligned_cols=333 Identities=17% Similarity=0.108 Sum_probs=206.5
Q ss_pred CCCcccccchh--hhh--cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAE--NLL--CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~--n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
...+||++.+. +.+ +++.+.+++.+... . .....| ..++++++++.+.+..+ .++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~----------~-~~~~~~-----~~~~~~~l~~~la~~~~-----~~~ 113 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALA----------R-GWLYGA-----PGEAEVLLAEKILGYVK-----RGG 113 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH----------T-CSCCSS-----CCHHHHHHHHHHHHHHC-----TTC
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHH----------h-CCCCCC-----CCHHHHHHHHHHHHhCC-----CCC
Confidence 45678998876 344 34555555543110 0 001122 24455555555554432 468
Q ss_pred cEEEeCChhHHHHHHHHH---hcCCCCeEEEeCCCCcChHHHHhh-------------hcCc------EEEEeecCCCCC
Q 011570 121 RIVMSGGATGAHETVAFC---LADPGDAFLVPTPYYPGFDRDLRW-------------RTGV------QLVPVVCDSSND 178 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~---l~~~gd~Vlv~~P~y~~~~~~~~~-------------~~G~------~~~~v~~~~~~~ 178 (483)
+|++|+|+++++..++.+ +. +++.|++.+|+|+++...+.. ..|+ +++.++.
T Consensus 114 ~v~~~~sgseA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~----- 187 (434)
T 2epj_A 114 MIRFVNSGTEATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY----- 187 (434)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-----
T ss_pred EEEEeCCHHHHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-----
Confidence 999999999999999987 44 457888889999875432210 0132 2444442
Q ss_pred cccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 179 FKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 179 ~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
.|++.|++++++. +.++++ ++++| +||||.++ +.+.+++|.++|++||+++|+||+|.++ ..+ .. .. .
T Consensus 188 --~d~~~le~~l~~~---~~~~~~-vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g-~~-~~-~ 257 (434)
T 2epj_A 188 --NDVEALERVFAEY---GDRIAG-VIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLG-LE-GA-Q 257 (434)
T ss_dssp --TCHHHHHHHHHHH---GGGEEE-EEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSS-TT-HH-H
T ss_pred --CCHHHHHHHHHhC---CCCEEE-EEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCC-cc-hh-h
Confidence 2789999998752 125555 55556 57899876 7999999999999999999999999975 333 21 12 2
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-----hcCCCChHHHHHHHHhcCChhHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-----SFGLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-----~~~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
+... .... +.||||.+| +|+|+||+++ ++.+.+.+.... ..+..+++++.++.++++.. ++
T Consensus 258 ~~~~-----~~~d---i~s~sK~l~-~G~~~G~v~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~---~~- 323 (434)
T 2epj_A 258 GYFN-----IEGD---IIVLGKIIG-GGFPVGAVAG-SREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKAL---EE- 323 (434)
T ss_dssp HHHT-----CCCS---EEEEEGGGG-TTSSCEEEEE-CHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH---HH-
T ss_pred HHhC-----CCCC---eeeecchhc-CCcceeeeee-cHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHH---Hh-
Confidence 2211 1122 249999999 5999999999 456655443311 11346777877776666421 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCch-hh------ccChHHHHHHHHHHHHhcCeEeeCC
Q 011570 332 IAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHL-LK------EQTYEAEMALWRVIINEVKLNVSPG 400 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~-~~------~~~~~~~~~~~~~Ll~~~gV~v~pg 400 (483)
.+..++++++++++.+.|+++ ++....+..|.|+|++++.. .. ........+++..|++ +||.+.||
T Consensus 324 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 401 (434)
T 2epj_A 324 -EPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLR-RGVFIAPS 401 (434)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHH-CCeEEecc
Confidence 223444555556666666543 55432233456889988641 00 0001123467777774 69999987
Q ss_pred CCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 401 SSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
.. .++|+++. .+++++++++++|++++++.
T Consensus 402 ~~------~~~~~~~~-~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 402 NL------EAVFTGLP-HQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp TT------SCEECCTT-CSHHHHHHHHHHHHHHHHHH
T ss_pred CC------CcEEEecc-CCHHHHHHHHHHHHHHHHHH
Confidence 42 24777754 69999999999999998764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=222.11 Aligned_cols=296 Identities=13% Similarity=0.190 Sum_probs=200.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.|.+..+..++|+++|++++ .+++++++|+++++..++.++ +++||+|+++.|+|..+...+... |.+
T Consensus 31 ~~~~~~~~~~l~~~la~~~~----------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~-g~~ 99 (373)
T 3frk_A 31 WFILGDEDKKFEQEFADYCN----------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYT-GAK 99 (373)
T ss_dssp CCSSSHHHHHHHHHHHHHHT----------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHH-SCE
T ss_pred CccCCchHHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCE
Confidence 35555678999999999986 248999999999999999999 999999999999999999988876 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-c
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-F 246 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~ 246 (483)
++.++.+++ ++.+|++++++++.+ ++++|+ |+||||.+.+ +++|.++|+++|+++|+|++|+... +
T Consensus 100 ~~~~~~~~~-~~~~d~~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~ 166 (373)
T 3frk_A 100 PIFVEPDIR-TYNIDPSLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLY 166 (373)
T ss_dssp EEEECEETT-TTEECGGGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEE
T ss_pred EEEEecccc-ccCcCHHHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEE
Confidence 999998743 578999999988753 778777 7889999988 7788888999999999999997532 2
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCc--cccCCCCceEEEEEecChHHHHHHHHhhhcCC--------------C
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLS--KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--------------V 310 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S--K~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~--------------~ 310 (483)
.. .. +. . -..+++.||| |.+|..| +.|+++++++.+.+.+......+. .
T Consensus 167 ~~-~~------~~------~-~~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 231 (373)
T 3frk_A 167 KG-MK------VG------S-LGDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRL 231 (373)
T ss_dssp TT-EE------TT------S-SSSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCC
T ss_pred CC-Ee------cc------c-cccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCC
Confidence 22 11 10 0 1236677877 8886325 478999877777666655443211 2
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec-CCceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
+.+...+....+. .+++..++.++..+++.+.|.+.++.+.. +.++...|..++-... +..++.+.|
T Consensus 232 ~~~~aa~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~L 299 (373)
T 3frk_A 232 DELQAGFLRVKLK-------YLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE-----KRDELQKYL 299 (373)
T ss_dssp CHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES-----SHHHHHHHH
T ss_pred CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC-----CHHHHHHHH
Confidence 3332222222121 12344455566677788888877644332 2222222221111000 123566666
Q ss_pred HHhcCeEeeCCCCCCC-----------C-C---------CCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHC-----------P-N---------PGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~-----------~-~---------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.+ +||.++++..... . . .+.+||++.. .++++++.+++.|+++..+
T Consensus 300 ~~-~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~ 367 (373)
T 3frk_A 300 NN-NGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE 367 (373)
T ss_dssp HH-TTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred HH-CCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence 64 5999987641110 0 0 1579999976 6999999999999876544
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=226.85 Aligned_cols=324 Identities=15% Similarity=0.145 Sum_probs=219.8
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCc-----CCCcEEEeCChhHHHHHHHHHhcCC---------CC--------e-
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITF-----DPDRIVMSGGATGAHETVAFCLADP---------GD--------A- 145 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~-----~~~~i~it~G~~~al~~~~~~l~~~---------gd--------~- 145 (483)
.|....+..++++++++++.+.+|..... ...++++|+|+++++..++.++.++ || .
T Consensus 104 ~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~ 183 (486)
T 1js3_A 104 SWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKL 183 (486)
T ss_dssp SGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHE
T ss_pred ccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCE
Confidence 35444557899999999999888732100 1357899999999999888775321 43 3
Q ss_pred -EEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHH
Q 011570 146 -FLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDI 224 (483)
Q Consensus 146 -Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i 224 (483)
|+++.++|..+...++.. |++++.+|++ .++.+|+++|+++|.+..+.+..+.+|++++|+||||.+-+ +++|
T Consensus 184 ~v~~s~~~h~s~~~~~~~~-G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~---l~~I 257 (486)
T 1js3_A 184 VAYASDQAHSSVERAGLIG-GVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEV 257 (486)
T ss_dssp EEEEETTCCHHHHHHHHHH-TCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCCcHHHHHHHHhC-CCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC---HHHH
Confidence 888999999999988886 9999999986 36789999999999875444444568999999999999866 8899
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchH-HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH-HHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSI-AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-VSCAR 302 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~-~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l-~~~~~ 302 (483)
+++|++||+++++|++|+...+.. +.+... ..+ . ..+ .+..+++|.++.| +++||+++.++.. .+.+.
T Consensus 258 ~~la~~~~~~lhvD~a~g~~~~~~-~~~~~~~~g~-~-----~ad--si~~~~hK~~~~p-~~~G~l~~~~~~~l~~~~~ 327 (486)
T 1js3_A 258 GPICHEEDIWLHVDAAYAGSAFIC-PEFRHLLNGV-E-----FAD--SFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFK 327 (486)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGS-TTTGGGGTTG-G-----GCS--EEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC
T ss_pred HHHHHHcCCEEEEehhhHHHHHHC-HHHHHHhcCc-c-----ccC--eeEEchhhhcCCC-cceEEEEEeCHHHHHHHhc
Confidence 999999999999999998754433 222221 111 1 112 3456899999855 8999999976643 32221
Q ss_pred Hhhhc--------------------C--CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec
Q 011570 303 KMSSF--------------------G--LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK 359 (483)
Q Consensus 303 ~~~~~--------------------~--~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~ 359 (483)
....+ . ....+.+.++...+. .+.+++..+++.++++++.+.|.+. |+++..
T Consensus 328 ~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~ 402 (486)
T 1js3_A 328 LDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA 402 (486)
T ss_dssp ------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS
T ss_pred CCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC
Confidence 00000 0 012344444444432 2235666677788889999999887 888764
Q ss_pred -CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHH
Q 011570 360 -SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 360 -~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~ 436 (483)
+..+++. ++++.. + ....++.+.|.++ |+.+..+..+. +.+++|++++. .+++++++++++|++++++
T Consensus 403 ~~~~~~v~-f~~~~~-~----~~~~~l~~~L~~~-g~~~~~~~~~~--~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 403 EVTLGLVC-FRLKGS-D----GLNEALLERINSA-RKIHLVPCRLR--GQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CCCSSEEE-EEESSC-H----HHHHHHHHHHHHH-TSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEE-EEecCh-H----HHHHHHHHHHHhc-CCEEEEEEEEC--CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5665444 455421 0 1123677777766 65433322232 35689999854 4889999999999999988
Q ss_pred hhhccC
Q 011570 437 NVEAKV 442 (483)
Q Consensus 437 ~~~~~~ 442 (483)
..++..
T Consensus 474 ~~~~~~ 479 (486)
T 1js3_A 474 LLAAEE 479 (486)
T ss_dssp HHC---
T ss_pred HHhhhc
Confidence 765543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=224.93 Aligned_cols=322 Identities=11% Similarity=0.093 Sum_probs=222.8
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--------CC-----C-eEEEeCCCCcC
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--------PG-----D-AFLVPTPYYPG 155 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--------~g-----d-~Vlv~~P~y~~ 155 (483)
|....+..++++++.+++.+.+| .+.+++++++|+|+++++..++.++.. +| + .|+++.++|+.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g--~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s 201 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVG--WSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYS 201 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHT--CCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTH
T ss_pred hhhChHHHHHHHHHHHHHHHHhC--CCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHH
Confidence 44444556788888888888877 222278999999999999999988753 56 6 79999999999
Q ss_pred hHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcC
Q 011570 156 FDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 156 ~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~ 232 (483)
+...+... |. +++.+|.++ ++.+|+++|+++|.+...++.++++|++++|+||||.+.+ +++|+++|+++|
T Consensus 202 ~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~g 275 (504)
T 2okj_A 202 IKKAGAAL-GFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKYN 275 (504)
T ss_dssp HHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHcC
Confidence 98888775 66 899999864 5789999999999876555657899999999999999987 888899999999
Q ss_pred cEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHH-HHHhhhcC---
Q 011570 233 IHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC-ARKMSSFG--- 308 (483)
Q Consensus 233 ~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~-~~~~~~~~--- 308 (483)
+++++|++|+...+.. +.+.....-.. ...+++.|++|.++.| .++|++++.++.+... +.....+.
T Consensus 276 ~~lhvD~a~~~~~~~~-~~~~~~~~g~~-------~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~~~~~l~~~ 346 (504)
T 2okj_A 276 LWLHVDAAWGGGLLMS-RKHRHKLNGIE-------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMCAGYLFQP 346 (504)
T ss_dssp CEEEEEETTGGGGGGC-TTTGGGGTTGG-------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCSSSCCS
T ss_pred CEEEEehhhhhHHHhC-HhhHhhcCCcc-------cCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcCCCccccCC
Confidence 9999999998765543 22212111011 2235677999998854 7899999966544332 21111111
Q ss_pred C-------------------CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec---CCceEE
Q 011570 309 L-------------------VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK---SNAGLF 365 (483)
Q Consensus 309 ~-------------------~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~---~~~g~f 365 (483)
. ..++.+.++..++.. +.+++..++..++++++.+.|++. |+++.. |..+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v 421 (504)
T 2okj_A 347 DKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT-----VGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNV 421 (504)
T ss_dssp CCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCE
T ss_pred cccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEE
Confidence 0 124445455444432 234566677788889999999987 888774 677777
Q ss_pred EeeecCchhhc----cCh-----HHHHHHHHHHHHhcCe-EeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHH
Q 011570 366 LWMDLHHLLKE----QTY-----EAEMALWRVIINEVKL-NVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSF 433 (483)
Q Consensus 366 ~~~~l~~~~~~----~~~-----~~~~~~~~~Ll~~~gV-~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~ 433 (483)
++...+..... ... .....+.+.|.++ |+ .+.++. +. ...+++|+++++ +++++++.++++|+++
T Consensus 422 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~-~~-~~~~~lRis~~~~~~t~edi~~~~~~l~~~ 498 (504)
T 2okj_A 422 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQP-QG-DKANFFRMVISNPAATQSDIDFLIEEIERL 498 (504)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEE-ET-TEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEeCccccccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeE-EC-CceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 66544432100 000 0123567777765 75 444332 32 123589999973 5899999999999887
Q ss_pred HHH
Q 011570 434 MLK 436 (483)
Q Consensus 434 l~~ 436 (483)
.++
T Consensus 499 ~~~ 501 (504)
T 2okj_A 499 GQD 501 (504)
T ss_dssp HTC
T ss_pred HHH
Confidence 654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=216.37 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=201.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.|.+..+..++++++|++++ .+++++++|+++++..++.++ +++||+|+++.|+|..+...+... |.+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~----------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~-G~~ 98 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVG----------AKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALL-GAK 98 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCE
T ss_pred CccCChHHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHc-CCE
Confidence 35455568899999999986 238999999999999999999 899999999999999999988876 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC-cc
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT-VF 246 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~-~~ 246 (483)
++.++++++ ++.+|++.+++++++ ++++|+ |+||||...+ +++|.++|+++|++||+|++|+.. .+
T Consensus 99 ~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~~~~~~li~D~a~~~g~~~ 165 (367)
T 3nyt_A 99 PVYVDIDPR-TYNLDPQLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIASKYGIPVIEDAAQSFGASY 165 (367)
T ss_dssp EEEECBCTT-TCSBCGGGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCCBEEECTTTTTCEE
T ss_pred EEEEecCCc-cCCcCHHHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHHHcCCEEEEECccccCCeE
Confidence 999998753 478999999998853 778776 8899998887 788888899999999999999742 22
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhc--------------CCC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--------------GLV 310 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--------------~~~ 310 (483)
.+ ... . ... .+++.|| +|.+|.+|. .|+++++++.+.+.+...... ...
T Consensus 166 ~~-~~~---~---------~~~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~ 230 (367)
T 3nyt_A 166 KG-KRS---C---------NLS-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRL 230 (367)
T ss_dssp TT-EET---T---------SSS-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCC
T ss_pred CC-eec---c---------CCC-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCc
Confidence 22 111 0 112 4677887 899985577 899999777777776654332 224
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-Cce----EEEeeecCchhhccChHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAG----LFLWMDLHHLLKEQTYEAEMAL 385 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g----~f~~~~l~~~~~~~~~~~~~~~ 385 (483)
+.+...++...+.. +++..++.++..+++.+.|.+.++.+... .++ +++++.++. ...+
T Consensus 231 ~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l 294 (367)
T 3nyt_A 231 DTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMDN---------RESV 294 (367)
T ss_dssp CHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECSS---------HHHH
T ss_pred cHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeCC---------HHHH
Confidence 44444444333322 22333444555667777787776544322 221 123333331 2256
Q ss_pred HHHHHHhcCeEeeCCCC--------CC-CCC---------CCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSS--------FH-CPN---------PGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~--------f~-~~~---------~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
.+.|. ++||.++++.. |. ... ...+||++.. .++++++.+++.|++.
T Consensus 295 ~~~L~-~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 295 QASLK-AAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHH-HHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHH-HCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 66665 45999887642 10 000 2369999965 6999999999998764
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=225.75 Aligned_cols=316 Identities=12% Similarity=0.028 Sum_probs=217.9
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE---EeCChhHHHHHHHHHhcCC--------CC-----eEEEeCCCCcC
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV---MSGGATGAHETVAFCLADP--------GD-----AFLVPTPYYPG 155 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~---it~G~~~al~~~~~~l~~~--------gd-----~Vlv~~P~y~~ 155 (483)
.+.+..++++.+.+++.+.+| .+.+++++. +|+|+++++..++.++..+ |+ .|+++.++|..
T Consensus 89 ~~p~~~~le~~~~~~la~l~g--~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s 166 (502)
T 3hbx_A 89 EYPVTTELQNRCVNMIAHLFN--APLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVC 166 (502)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT--CCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHH
T ss_pred cChhHHHHHHHHHHHHHHHhC--CCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHH
Confidence 334567888888888888877 332355554 4999999999998887655 76 89999999999
Q ss_pred hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc----
Q 011570 156 FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK---- 231 (483)
Q Consensus 156 ~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~---- 231 (483)
+...++.. |++++.+++++ ++|.+|+++|++++.+ ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 167 ~~~~~~~~-G~~~~~v~~~~-~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~ 235 (502)
T 3hbx_A 167 WEKFARYF-EVELKEVKLSE-GYYVMDPQQAVDMVDE------NTICVAAILGSTLNGEFED---VKLLNDLLVEKNKET 235 (502)
T ss_dssp HHHHHHHT-TCEEEEECCBT-TBCSCCHHHHHHHCCT------TEEEEEEEBSCTTTCCBCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CceeEEEecCC-CcCcCCHHHHHHHHhh------CCEEEEEecCCCCCCcccC---HHHHHHHHHHhhhcc
Confidence 99988876 99999999865 3588999999999864 7889999999999999988 77777888888
Q ss_pred --CcEEEEccccccCcc--CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHH-HHHHHhhh
Q 011570 232 --NIHLVCDEIYAATVF--TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV-SCARKMSS 306 (483)
Q Consensus 232 --~~~iI~Deay~~~~~--~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~-~~~~~~~~ 306 (483)
|+++++|++|+++.. .. ........ .....++..|.+|.++ ++.++||++..++... ..+.....
T Consensus 236 ~~~~~l~VD~A~~~~~~p~~~-~~~~~~~~--------~~~~D~v~~s~hK~l~-~p~g~G~~~~~~~~~l~~~~~~~~~ 305 (502)
T 3hbx_A 236 GWDTPIHVDAASGGFIAPFLY-PELEWDFR--------LPLVKSINVSGHKYGL-VYAGIGWVIWRNKEDLPEELIFHIN 305 (502)
T ss_dssp CCCCCEEEECTTGGGTHHHHC-TTCCCSTT--------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEC
T ss_pred CCCCeEEEECCccchhhhhhC-cccccccC--------CCCceEEEECcccccC-CCCCeEEEEEeCHHHhhHHhccCcc
Confidence 999999999986431 11 11111000 1244566778999764 7788999988654432 21110011
Q ss_pred c-----------CCC---ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecC-CceEEEeeec
Q 011570 307 F-----------GLV---SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKS-NAGLFLWMDL 370 (483)
Q Consensus 307 ~-----------~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~-~~g~f~~~~l 370 (483)
+ +.. ...++.++...+... .+.+..++..++++++.+.|.+++ +++..+ ....++.+++
T Consensus 306 yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~-----g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~ 380 (502)
T 3hbx_A 306 YLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHE-----GYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSL 380 (502)
T ss_dssp SSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEE
T ss_pred cccCCCCCccccCCchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEe
Confidence 1 000 122333333333222 235556667778889999999985 888765 3445777887
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC-CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC-PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~-~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
+.... . ...++.+.|. +.||.+........ .+..++||+++. .++++++.+++.|+++++..++.
T Consensus 381 ~~~~~---~-~~~~l~~~L~-~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 381 KDSSC---H-TEFEISDMLR-RYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDEL 447 (502)
T ss_dssp SSCSS---C-CHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCc---C-CHHHHHHHHH-hCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 64211 1 1225666666 56998754432221 234689999976 59999999999999999887655
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-25 Score=222.78 Aligned_cols=280 Identities=18% Similarity=0.170 Sum_probs=186.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH----HHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR----DLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~----~~~~~~G~~~~~v 171 (483)
..+|++.+|++++ .+..++++++++++..++.+++++||+|+++.|+|..+.. .+... |++++.+
T Consensus 84 ~~~le~~lA~l~g----------~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~-G~~~~~v 152 (430)
T 3ri6_A 84 VEDLEQRLKNLTG----------ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSF-GIEVRFV 152 (430)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHC----------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHc-CCEEEEe
Confidence 5677778887765 2335666666799999999999999999999999988877 44554 9999998
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+..
T Consensus 153 ~~~-------d~~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~--- 213 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE--- 213 (430)
T ss_dssp CTT-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC---
T ss_pred CCC-------CHHHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 864 78999988853 7999999999999999998 7788999999999999999997533211
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEe--cChHH------------------HHHHHH--hhhcCC
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYS--YNDQV------------------VSCARK--MSSFGL 309 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~--~~~~l------------------~~~~~~--~~~~~~ 309 (483)
+ .. .+.++++.|+||.+|.+|..+|.+++ .+..+ ...... ....+.
T Consensus 214 --~-~~---------~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~ 281 (430)
T 3ri6_A 214 --A-KR---------LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGP 281 (430)
T ss_dssp --G-GG---------GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred --h-HH---------cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCC
Confidence 1 11 13457899999999867665554444 22111 111111 122232
Q ss_pred -CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecCC----------------ceEEEeeec
Q 011570 310 -VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKSN----------------AGLFLWMDL 370 (483)
Q Consensus 310 -~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~~----------------~g~f~~~~l 370 (483)
.++.....+ +.. .+.+..+.++..++...+.+.|++. +++ +..|. ||+.+|+++
T Consensus 282 ~~~~~~a~l~---l~~----l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l 354 (430)
T 3ri6_A 282 SLSPHNAYLQ---SLG----LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL 354 (430)
T ss_dssp CCCHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred CCCHHHHHHH---Hhh----hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence 333222221 111 1223444556677888888999877 554 44443 565899999
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHH
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSR 429 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~ 429 (483)
+.. .+...|...+. ..++.+.+|..+.. ..+++||||++. |+.+.+++.
T Consensus 355 ~~~------~~~~~~~~~l~-~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~---E~~~dl~~d 424 (430)
T 3ri6_A 355 ESK------EASYRFMDALK-LIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI---EEIEDLKED 424 (430)
T ss_dssp SSH------HHHHHHHHHCS-SSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS---SCHHHHHHH
T ss_pred CCH------HHHHHHHHhCC-cceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc---CCHHHHHHH
Confidence 732 12224444332 34666777776541 135789999984 445566666
Q ss_pred HHHHH
Q 011570 430 ITSFM 434 (483)
Q Consensus 430 L~~~l 434 (483)
|++++
T Consensus 425 l~~al 429 (430)
T 3ri6_A 425 ILQAL 429 (430)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-24 Score=220.25 Aligned_cols=342 Identities=11% Similarity=0.054 Sum_probs=197.7
Q ss_pred CCCCcccccchh--hhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAE--NLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~--n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
+...++|+..+. +.++ ++.+.+++.+.... . ....|+ .+...++++.+.+..+ .+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~----------~-~~~~~~-----~~~~~~la~~l~~~~~-----~~ 109 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER----------G-LSFGAP-----TEMEVKMAQLVTDLVP-----TM 109 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT----------C-SCCSSC-----CHHHHHHHHHHHHHST-----TC
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHh----------C-cccCCC-----CHHHHHHHHHHHhhCC-----CC
Confidence 345678888775 3332 45555555431110 0 011232 2344444444443322 47
Q ss_pred CcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEE--EEeecCCCC------C---c-ccCHHH
Q 011570 120 DRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQL--VPVVCDSSN------D---F-KVTMEA 185 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~--~~v~~~~~~------~---~-~~d~~~ 185 (483)
++|++|+|+++++..++.... .+++.|++.+++|+++........|... ...+....- . + ..|++.
T Consensus 110 ~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 189 (429)
T 4e77_A 110 DMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLAS 189 (429)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHH
Confidence 899999999999999987543 3567899999999876542221111111 111110000 0 0 017899
Q ss_pred HHHHHHHHHhcCCceeEEEEeCCCCCCcCCC--CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhcc
Q 011570 186 LEAAYEKAQESNIRIKGVLITNPSNPLGTFL--DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDI 263 (483)
Q Consensus 186 l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~--~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~ 263 (483)
|++++++. +.++ ++++++|+||+|.++ +.+.+++|.++|++||+++|+||+|.++ ..+ .. .....+ .
T Consensus 190 le~~l~~~---~~~~-~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g-~~-~~~~~~-~--- 258 (429)
T 4e77_A 190 VRQAFEQY---PQEV-ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVA-LA-GAQDYY-H--- 258 (429)
T ss_dssp HHHHHHHS---TTTE-EEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTB-TT-CHHHHT-T---
T ss_pred HHHHHHhc---CCCE-EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccC-cc-hHHHhc-C---
Confidence 99988752 1244 456678876665443 3556999999999999999999999975 333 22 222222 1
Q ss_pred ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-----hhcCCCChHHHHHHHHhcC---ChhHHHHHHHHH
Q 011570 264 ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-----SSFGLVSSQTQHLIATMLS---DDQFVEKFIAES 335 (483)
Q Consensus 264 ~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-----~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~ 335 (483)
.... +.||||.+| +|+|+||+++ ++.+.+.+... ...+..+++++.++.++++ +.++ .++.
T Consensus 259 --~~pd---i~t~sK~~~-~G~~~G~~~~-~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~----~~~~ 327 (429)
T 4e77_A 259 --VIPD---LTCLGKIIG-GGMPVGAFGG-RREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV----YETL 327 (429)
T ss_dssp --CCCS---EEEEEGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH----HHHH
T ss_pred --CCCC---eeeeccccc-CCCCeEEEEE-CHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH----HHHH
Confidence 1122 249999999 8999999999 56665554331 1223477888887766664 3332 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhcc--------ChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 336 AKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQ--------TYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~--------~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
++.....++.+.+.+.+.++....+..|+|+|++++...... ......+++..|+++ ||.++|+..
T Consensus 328 ~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~~~----- 401 (429)
T 4e77_A 328 TELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPSAF----- 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSSTT-----
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeecCC-----
Confidence 222222233344444445655455556679999987531000 011224677777754 999998742
Q ss_pred CCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 408 PGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 408 ~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
..+|+++. .+++++++++++|++++++
T Consensus 402 -~~~~~~~~-~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 402 -EAGFMSLA-HSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp -SCEECCTT-CCHHHHHHHHHHHHHHHTT
T ss_pred -CCEEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 34677654 6999999999999998753
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=230.59 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=189.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
+.....++++.+|+ ++ .+ +++++|+|+++++..++.+++++||+|+++.|+|..+...+... |++++.+
T Consensus 55 ~~~~~~~~~~~la~-~g--------~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~-G~~~~~v 123 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HS--------DY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDIS-QQEGHFI 123 (446)
T ss_dssp CSSHHHHHHHHHCS-CT--------TE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHH-TCCEEEC
T ss_pred cchHHHHHHHHHHh-cC--------CC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHc-CCeEEEE
Confidence 33446788888887 65 23 68999999999999999999999999999999999999988876 9999999
Q ss_pred ec--CCCCC--cccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccccc-Ccc
Q 011570 172 VC--DSSND--FKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAA-TVF 246 (483)
Q Consensus 172 ~~--~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~-~~~ 246 (483)
+. +++.+ +.+|++.| +. +++++|++++ .|+||.+++ +++|+++|+++|+++|+||+|+. +.|
T Consensus 124 ~~~~~~~~~~~~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNLSRL---NN------DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EEEECTTTSSEEEEEC----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred eCeeccccCcCCCCCHHHH---cC------CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 87 43211 56788877 22 3789999999 455999999 78899999999999999999986 224
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHH-HHHHH-hhhc--CCCChHHHHHHHHhc
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV-SCARK-MSSF--GLVSSQTQHLIATML 322 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~-~~~~~-~~~~--~~~s~~~q~~~~~~l 322 (483)
.+ . ..+...+ +..+++.|+||+++ ++.++||++++++.+. ..+.. ...+ +..+.....++..++
T Consensus 191 ~~-~-~~~~~~~---------g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~ 258 (446)
T 2x3l_A 191 QG-F-PDSTLNY---------QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAA 258 (446)
T ss_dssp TT-S-CCCGGGG---------TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred CC-C-CCChHHc---------CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 43 2 2333322 22378899999653 3345799999655332 12221 1111 223333222222222
Q ss_pred CChhHHHHHH-HHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee-CC
Q 011570 323 SDDQFVEKFI-AESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS-PG 400 (483)
Q Consensus 323 ~~~~~~~~~~-~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~-pg 400 (483)
.+++... ++..++..+..+++.+. |+++..+..+.++|++++. .+ ..++.+.|.++ ||.+. +|
T Consensus 259 ---~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~~~~~~~~~l~i~~~~-~~------~~~l~~~L~~~-GI~v~~~g 323 (446)
T 2x3l_A 259 ---QFYKTYDSTLFFAKRAQLIECLENK----GFEMLQVDDPLKLLIKYEG-FT------GHDIQNWFMNA-HIYLELAD 323 (446)
T ss_dssp ---HHHHHCCCHHHHHHHHHHHHHHHHH----TCEEEECSSTTEEEEECTT-SC------HHHHHHHHHHT-TEEESEEC
T ss_pred ---HHHHHhCHHHHHHHHHHHHHHHHHc----CCEECcCCCCeEEEEEeCC-cC------HHHHHHHHHHC-CCEEEecC
Confidence 1111110 11233333444444443 7877766555689998872 11 23667777765 99987 44
Q ss_pred CCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 401 SSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 401 ~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++|++++. .+++++ +++++|+++++..
T Consensus 324 -------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 -------DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -------SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -------CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 2579999975 488889 9999999987654
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=222.57 Aligned_cols=294 Identities=14% Similarity=0.071 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc---C----------C-CCeEEEeCCCCcChHHHHhh
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA---D----------P-GDAFLVPTPYYPGFDRDLRW 162 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~---~----------~-gd~Vlv~~P~y~~~~~~~~~ 162 (483)
.++++.++++++ ...+++|++|+|+++++..++.++. . + ||.|++.+|+|+++......
T Consensus 104 ~~la~~la~~~~-------~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~ 176 (449)
T 2cjg_A 104 ARFVETFARVLG-------DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLS 176 (449)
T ss_dssp HHHHHHHHHHHC-------CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGG
T ss_pred HHHHHHHHHhcC-------CCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhh
Confidence 445555555543 1357899999999999999987543 2 2 89999999999876543222
Q ss_pred hcC--------c-----EEEEeecCCCCCc--------ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCc-CCCCHHH
Q 011570 163 RTG--------V-----QLVPVVCDSSNDF--------KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLG-TFLDRET 220 (483)
Q Consensus 163 ~~G--------~-----~~~~v~~~~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG-~~~~~~~ 220 (483)
..| . +++.+|.++.+.. ..+++.|++++++. +.++++|+++.++|||| .+++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~ 253 (449)
T 2cjg_A 177 LTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEF 253 (449)
T ss_dssp TCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHH
T ss_pred hcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHH
Confidence 112 1 4556665431011 24566788887642 23676655443378999 5899999
Q ss_pred HHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHH
Q 011570 221 LKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSC 300 (483)
Q Consensus 221 l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~ 300 (483)
+++|.++|++||+++|+||+|.++.+.+ . +.+...+ . ....+ .||||.+ |+||++++ +.+.+.
T Consensus 254 l~~l~~l~~~~g~lli~DEv~~g~g~~g-~-~~~~~~~-~-----~~~di---~t~sK~l-----~iG~~~~~-~~~~~~ 316 (449)
T 2cjg_A 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-T-AWAYQQL-D-----VAPDI---VAFGKKT-----QVCGVMAG-RRVDEV 316 (449)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTTTS-S-SSTHHHH-T-----CCCSE---EEECGGG-----SSEEEEEC-GGGGGS
T ss_pred HHHHHHHHHHCCcEEEEeccccCCCccC-c-ceeeccc-C-----CCceE---EEecCcc-----cEEEEEEC-HHHhhh
Confidence 9999999999999999999999764544 2 2232222 1 11222 2789987 79999995 455443
Q ss_pred -----HHH--hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----C-ceeecCCceEEEe
Q 011570 301 -----ARK--MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-----G-IGCLKSNAGLFLW 367 (483)
Q Consensus 301 -----~~~--~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g-i~~~~~~~g~f~~ 367 (483)
... ....+..+++++.++.++++.. .+ +...++++++++++.+.|+++ + +....+.| .|++
T Consensus 317 l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g-~~~~ 390 (449)
T 2cjg_A 317 ADNVFAVPSRLNSTWGGNLTDMVRARRILEVI---EA--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRG-LMCA 390 (449)
T ss_dssp TTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH---HH--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEET-TEEE
T ss_pred hhhcccCCcccccCCCCCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeecc-EEEE
Confidence 111 1112346788888887777521 11 223445566666666666543 2 44455555 4677
Q ss_pred eecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 368 MDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 368 ~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++++... ...+++..|++ +||.+.|+. .+++||+++. .+++++++++++|++++++
T Consensus 391 ~~~~~~~------~~~~~~~~l~~-~Gv~v~~~g------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 391 FSLPTTA------DRDELIRQLWQ-RAVIVLPAG------ADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EECSSHH------HHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECChH------HHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 8887521 13368888885 699999862 4789998765 5999999999999998865
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=216.22 Aligned_cols=325 Identities=10% Similarity=0.093 Sum_probs=223.9
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcC--------------CCCeEEEeCCCC
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--------------PGDAFLVPTPYY 153 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~--------------~gd~Vlv~~P~y 153 (483)
..|....+..++++++++|+.+.+| .+.+++.+++|+|+++++..++.++.+ +++.|+++.++|
T Consensus 125 ~~~~~~p~~~~le~~~~~~l~~~~g--~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H 202 (511)
T 3vp6_A 125 FTYEIAPVFVLMEQITLKKMREIVG--WSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSH 202 (511)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHHHHT--CCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSC
T ss_pred CCcccCchHHHHHHHHHHHHHHHhC--CCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCch
Confidence 3566666788999999999999988 333467999999999999988877654 577999999999
Q ss_pred cChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh
Q 011570 154 PGFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE 230 (483)
Q Consensus 154 ~~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~ 230 (483)
..+...++.. |. +++.++.++ ++.+|+++|+++|.+...++..+++|++++|+||||.+-+ +++|+++|++
T Consensus 203 ~s~~~~~~~~-g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~---l~~I~~ia~~ 276 (511)
T 3vp6_A 203 YSIKKAGAAL-GFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEK 276 (511)
T ss_dssp THHHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC---HHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc---HHHHHHHHHH
Confidence 9999988876 87 899999874 5789999999999876666666899999999999999966 8899999999
Q ss_pred cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-hhhcC-
Q 011570 231 KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-MSSFG- 308 (483)
Q Consensus 231 ~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~~~~~- 308 (483)
||+++++|++|+...+.. +.+.....-.. ...+++.+++|.++.| ..+|+++..++.+...... ...+.
T Consensus 277 ~~~~lhvD~a~~~~~~~~-~~~~~~~~g~~-------~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~~~~yl~ 347 (511)
T 3vp6_A 277 YNLWLHVDAAWGGGLLMS-RKHRHKLNGIE-------RANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQMHASYLF 347 (511)
T ss_dssp HTCEEEEEETTGGGGGGC-TTTGGGGTTGG-------GCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCCCCTTTC
T ss_pred cCCEEEEEccchhhHhhC-hhhhhhccCCc-------cCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhccCCcccc
Confidence 999999999998765433 22221111011 2235567999998744 6789888866654433211 11110
Q ss_pred ---------------------CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec---CCce
Q 011570 309 ---------------------LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK---SNAG 363 (483)
Q Consensus 309 ---------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~---~~~g 363 (483)
....+...++..++. .+.+++..++..++.+++.+.|++. |+++.. |..+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g-----~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 348 QQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 422 (511)
T ss_dssp CSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSS
T ss_pred CcccccccccCccCCCCCCCCchHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence 011222333333331 3346777778888889999999887 888865 5666
Q ss_pred EEEeeecCchhhcc--C------h-HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQ--T------Y-EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITS 432 (483)
Q Consensus 364 ~f~~~~l~~~~~~~--~------~-~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~ 432 (483)
.+.|.-.|...+.. . . ....++.+.|.++ |+.+.. ..+...+.+++|+++++ .++++++.++++|++
T Consensus 423 ~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 423 NVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMES-GTTMVG-YQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp CEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHH-TSCEEE-EEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEE-EEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 54443334332110 0 0 0123577777766 654332 11221223579999943 589999999999987
Q ss_pred HHHH
Q 011570 433 FMLK 436 (483)
Q Consensus 433 ~l~~ 436 (483)
+-+.
T Consensus 501 ~~~~ 504 (511)
T 3vp6_A 501 LGQD 504 (511)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 6544
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=216.19 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=202.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChh-HHHHHHHHHhcC--CCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGAT-GAHETVAFCLAD--PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~-~al~~~~~~l~~--~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
..++.+++.+++.+.+| ++++ +++|+|++ .++..++.++.. +|+.|+++.+.|+.+...++.. |++++.++
T Consensus 131 ~~~~~~~~~~~la~~~g----~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~-G~~~~~v~ 204 (456)
T 2z67_A 131 MYALTNKILESFFKQLG----LNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVE 204 (456)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcC----CCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHc-CCCceEEE
Confidence 45566666666666655 3445 99999999 455545555433 6788999999999998888875 99999988
Q ss_pred cCC-CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 173 CDS-SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 173 ~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.. +.++.+|+++|+++|++... ..++.+|++++||||||.+.+ +++|.++|+++|+++++|++|+...++. .
T Consensus 205 ~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~-~- 278 (456)
T 2z67_A 205 TVLDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY-L- 278 (456)
T ss_dssp CEEETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH-H-
T ss_pred EeccCCCCCcCHHHHHHHHHHHhh-CCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh-h-
Confidence 632 34678999999999932111 126778889999999999988 7888888999999999999997643211 0
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCC--hHHHHHHHHhcCChhHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVS--SQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s--~~~q~~~~~~l~~~~~~~ 329 (483)
........ . ...+++.|++|.++ +++++||+++.++.+.+.+......+... .+++.++...+. .
T Consensus 279 -~~~~~~~~-----~-~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~ 345 (456)
T 2z67_A 279 -EKLKKAFK-----Y-RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----S 345 (456)
T ss_dssp -HHHHHHHT-----S-CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----H
T ss_pred -HHHHHhhC-----C-CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----H
Confidence 01111111 1 22356789999764 67899999996565555442211111111 223333333332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeec--CchhhccChHHHHHHHHHHHHhcCe---Eee--
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDL--HHLLKEQTYEAEMALWRVIINEVKL---NVS-- 398 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l--~~~~~~~~~~~~~~~~~~Ll~~~gV---~v~-- 398 (483)
..+++..+++.++++++.+.|.+. |+.+.++. .++++++ +.. ..++...|.++ || .+.
T Consensus 346 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~--~~v~~~~~~~~~--------~~~l~~~L~~~-gi~~~rv~~~ 414 (456)
T 2z67_A 346 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE--SPIASCISVNSD--------PVEIAAKLYNL-RVTGPRGIKK 414 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC--CSSEEEEECSSC--------HHHHHHHHHHT-TEESCEEECT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC--CeEEEEEecccH--------HHHHHHHHHHc-CCCcceEEee
Confidence 335666778888889999999887 87777776 3566666 321 12566777654 64 443
Q ss_pred ----CCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 399 ----PGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 399 ----pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+|..|.....+++|++++. .+++++++++++|++++
T Consensus 415 ~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 415 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp TCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred cCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2444433335799999984 69999999999998754
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=204.39 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChH--HHHhhhcC--cEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD--RDLRWRTG--VQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~--~~~~~~~G--~~~~~v~ 172 (483)
.++.+++++.+.+.+| .+ +.|++|+|+++++..++.. +.+||+|++..++|.++. ..++.. | .+++.++
T Consensus 34 ~~~~~~~~~~l~~~~~----~~-~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~-g~~~~~~~~~ 106 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYN----AE-AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKG-KFAKSSTVLT 106 (379)
T ss_dssp HHHHHHHHHHHHHHHT----CS-EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHH-CCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC----CC-CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHh-CCCCceEEEe
Confidence 3555555666555554 23 6899999999999998865 479999999999987643 233333 5 4777777
Q ss_pred cCCCC------Cc-ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc
Q 011570 173 CDSSN------DF-KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV 245 (483)
Q Consensus 173 ~~~~~------~~-~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~ 245 (483)
.+..+ .| .+|++++++++++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|+++. .
T Consensus 107 ~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g- 179 (379)
T 3ke3_A 107 AERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-G- 179 (379)
T ss_dssp CEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-T-
T ss_pred ccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-C-
Confidence 64311 12 48999999999642 68899999999999999999999999999999999999999985 2
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--h-----------------
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--S----------------- 306 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~----------------- 306 (483)
. .+ ..+..+ +..+++.|++|.++ .+..+|+++++ +.+.+.+.... .
T Consensus 180 --~-~~-~~~~~~---------~~d~~~~s~~K~l~-~~~g~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
T 3ke3_A 180 --C-VW-LDMKEL---------GIDVLISAPQKGWS-STPCAGLVMLS-AAAIKKVESTESNCFSLDLKQWLTIMRAYEN 244 (379)
T ss_dssp --T-CC-CCHHHH---------TCSEEEECTTTTTC-SCCCEEEEEEC-HHHHHHHHTCCCSCSTTCHHHHHHHHHHHHT
T ss_pred --C-cc-cccccc---------CCCEEEecchhhcC-CCCceEEEEEC-HHHHHhhhcCCCCceeecHHHHHHHHHhhhc
Confidence 2 22 233322 33467889999986 44458999994 55544443210 0
Q ss_pred ----c-CCCChHHHHHHHHhcCChhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhcc
Q 011570 307 ----F-GLVSSQTQHLIATMLSDDQFVEKF-IAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 307 ----~-~~~s~~~q~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~ 377 (483)
+ ++.+...+.++.+++.. +.+. +++..++++++++++.+.|.++|+++..+. .+....+..+..
T Consensus 245 g~~~~~~t~~~~~~~a~~aal~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~~---- 317 (379)
T 3ke3_A 245 GGHAYHATMPTDSLRQFRDAILE---AKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTERD---- 317 (379)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSCH----
T ss_pred cCCCCCCCCCHHHHHHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCCc----
Confidence 1 13455555555555432 2222 466677788888999999999898876543 222233333321
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCC---CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHC---PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~---~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+..+... +.++||.+.+|..+.. ...+.+||++.. .+++++++++++|++++++..
T Consensus 318 ----~~~~~~~-L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 318 ----DMHKGSA-FAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp ----HHHSSHH-HHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHH-HHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 1122333 4567999999986543 225789999965 588999999999999987764
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=219.37 Aligned_cols=315 Identities=10% Similarity=0.123 Sum_probs=214.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEEEeCChhHHHHHHHHHh----c---------CC------CC-eEEE
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIVMSGGATGAHETVAFCL----A---------DP------GD-AFLV 148 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l----~---------~~------gd-~Vlv 148 (483)
|....+..++++++.+++.+.+| +++ +++++|+|+++++..++.++ + .+ |+ .|++
T Consensus 132 ~~~~~~~~~le~~~~~~la~~~g----~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~ 207 (497)
T 2qma_A 132 WDQASSATYVEQKVVNWLCDKYD----LSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC 207 (497)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTT----CCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE
T ss_pred hhhChHHHHHHHHHHHHHHHHhC----CCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE
Confidence 44444567888888888888776 334 78999999999999988773 3 12 46 7999
Q ss_pred eCCCCcChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHH
Q 011570 149 PTPYYPGFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIV 225 (483)
Q Consensus 149 ~~P~y~~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~ 225 (483)
+.++|..+...+... |. +++.+|+++ ++.+|+++|+++|++...++.++.+|++++|+||||.+.+ +++|+
T Consensus 208 s~~~h~s~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~---l~~I~ 281 (497)
T 2qma_A 208 SKKSHFTVQKSASWM-GLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD---LDFIA 281 (497)
T ss_dssp ETTSCTHHHHHHHHT-TSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHH
T ss_pred CCCchHHHHHHHHHc-CCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC---HHHHH
Confidence 999999888888765 65 789999864 5789999999999864443333558899999999999887 88889
Q ss_pred HHHhhcCcEEEEccccccCccCCCCCcch-HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh
Q 011570 226 SFINEKNIHLVCDEIYAATVFTKESSFVS-IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM 304 (483)
Q Consensus 226 ~~a~~~~~~iI~Deay~~~~~~~~~~~~s-~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~ 304 (483)
++|+++|+++++|++|+...+.. . +.. +..+ . ...+++.|++|.++.| .++|++++.++...+.+...
T Consensus 282 ~l~~~~~~~l~vD~a~~~~~~~~-~-~~~~~~gi-~-------~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~~ 350 (497)
T 2qma_A 282 DMAVKHDMWMHVDGAYGGALILS-S-HKSRLKGV-E-------RAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLHH 350 (497)
T ss_dssp HHHHHHTCEEEEEETTGGGGGGS-T-TGGGGTTG-G-------GCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-
T ss_pred HHHHHcCCEEEEehhhhHHHHhC-c-chHhhcCc-c-------cCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcCC
Confidence 99999999999999998765433 2 211 1111 1 2235677999998755 79999998665432221100
Q ss_pred hhcC-C-----C-------------ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee-cCCce
Q 011570 305 SSFG-L-----V-------------SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL-KSNAG 363 (483)
Q Consensus 305 ~~~~-~-----~-------------s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~-~~~~g 363 (483)
..+. . . ..+.+.++...+.. +.+++..+++.++++++.+.|++. ++++. ++.++
T Consensus 351 ~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~ 425 (497)
T 2qma_A 351 ADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP-----KALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLS 425 (497)
T ss_dssp -------------------CCSCCCTHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSS
T ss_pred chhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCce
Confidence 0110 0 0 12223333344432 224556667778889999999887 88875 45555
Q ss_pred EEEeeecCchhhccChH-HHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec-c-CCHHHHHHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYE-AEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA-N-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~-~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~-~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++++++..... ... ...++.+.+.+ .|+.+.++..+. +.+++|++++ . .+++++++++++|++++++
T Consensus 426 -~v~f~~~~~~~--~~~~l~~~l~~~l~~-~G~~~~~~~~~~--g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 426 -TVLFRATHETA--DLDELNKALRLEALT-RGIAVLGETIVD--GKTALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp -EEEEEECCSSS--CHHHHHHHHHHHHHH-HTSCBCEEEEET--TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEcCCcc--CHHHHHHHHHHHHHh-CCCEEEEeeEEC--CEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 66677753210 111 12245566665 498877654442 3468999984 3 5999999999999988765
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=207.44 Aligned_cols=282 Identities=17% Similarity=0.153 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh----cCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR----TGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~----~G~~~~~v 171 (483)
..+|++.+|++.+ .+++++++++++++.. +..++++||+|+++.|+|+.....+... .|.+++.+
T Consensus 69 ~~~l~~~la~l~g----------~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 137 (400)
T 3nmy_A 69 RFAYERCVAALEG----------GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137 (400)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEE
Confidence 3566777776654 2367777777999998 5678899999999999998655543321 39999988
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.+ |++.+++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|....+.. +
T Consensus 138 ~~~-------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~--~ 199 (400)
T 3nmy_A 138 DLT-------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR--P 199 (400)
T ss_dssp CTT-------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--G
T ss_pred CCC-------CHHHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC--h
Confidence 854 78999988853 7899999999999999998 8889999999999999999997532221 1
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEE--EEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGI--IYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~--li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~ 327 (483)
+ ..+.++++.|+||.+|.+|.++|. +++.++.+.+.+...... ...++....++...++.
T Consensus 200 ------~-------~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~--- 263 (400)
T 3nmy_A 200 ------L-------SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT--- 263 (400)
T ss_dssp ------G-------GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT---
T ss_pred ------h-------hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH---
Confidence 1 114457899999999878877755 555566666665544332 23455555555554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecC----------------CceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKS----------------NAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~----------------~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
+..+.++..++...+.+.|++. .+. +..| ..|.+++++++... .....|...+
T Consensus 264 ----l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-----~~~~~~~~~l 334 (400)
T 3nmy_A 264 ----LPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-----DAAKRFCEKT 334 (400)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-----HHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-----HHHHHHHHcC
Confidence 2334455567777888888876 343 2222 23568889987421 1112333332
Q ss_pred HHhcCeEeeCCCCCCC---------------------CCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 390 INEVKLNVSPGSSFHC---------------------PNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~---------------------~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
. -.++.+..|..+.. -.++.+|||++. |+.+.+++.|+++++
T Consensus 335 ~-~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl---e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 335 E-LFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI---EDLGDLRGDLERALV 397 (400)
T ss_dssp S-SSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHC
T ss_pred C-cceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc---CCHHHHHHHHHHHHh
Confidence 1 23444444443210 135689999984 345556667777665
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-22 Score=213.06 Aligned_cols=320 Identities=13% Similarity=0.128 Sum_probs=214.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------C-CCC------eEEEeCCCCc
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------D-PGD------AFLVPTPYYP 154 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~-~gd------~Vlv~~P~y~ 154 (483)
.|....+..++.+.+.+++.+.+| .+++++++|+|+++++..++.++. + +|| .|+++.++|+
T Consensus 139 ~~~~s~~~~~le~~~~~~la~l~g----~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~ 214 (515)
T 2jis_A 139 TYEIAPVFVLMEEEVLRKLRALVG----WSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHY 214 (515)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHHHT----CSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCT
T ss_pred chhhchHHHHHHHHHHHHHHHHhC----CCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccH
Confidence 344444556778887888877776 457899999999999988887763 2 576 8999999999
Q ss_pred ChHHHHhhhcCc---EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc
Q 011570 155 GFDRDLRWRTGV---QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK 231 (483)
Q Consensus 155 ~~~~~~~~~~G~---~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~ 231 (483)
.+...++.. |. +++.+|.++ ++.+|+++|+++|.+...++.++++|++++|+||||.+.+ +++|.++|+++
T Consensus 215 s~~~~~~~~-g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~---l~~I~~la~~~ 288 (515)
T 2jis_A 215 SIQKGAAFL-GLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP---LEAIADVCQRH 288 (515)
T ss_dssp HHHHHHHHT-TSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC---HHHHHHHHHHc
Confidence 998888875 77 899999864 5789999999999876555557899999999999999988 88889999999
Q ss_pred CcEEEEccccccCccCCCCCcch-HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh-HHHHH-HHHhhhcC
Q 011570 232 NIHLVCDEIYAATVFTKESSFVS-IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND-QVVSC-ARKMSSFG 308 (483)
Q Consensus 232 ~~~iI~Deay~~~~~~~~~~~~s-~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~-~l~~~-~~~~~~~~ 308 (483)
|+++++|++|+...+.. +.+.. +..+ ....+++.|++|.++ .+.++|++++.++ .+.+. ......+.
T Consensus 289 g~~l~vD~a~~~~~~~~-~~~~~~~~g~--------~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~~~~~~~~~yl 358 (515)
T 2jis_A 289 GLWLHVDAAWGGSVLLS-QTHRHLLDGI--------QRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLKRCHGSQASYL 358 (515)
T ss_dssp TCEEEEEETTGGGGGGC-TTTGGGGTTG--------GGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHHHHHCC-----
T ss_pred CCeEEEehhhhhHHHhC-hhhHhhcCCC--------ccCCEEEECcccccC-CCCCeeEEEEeChHHHHHHHhcCCchhc
Confidence 99999999998765543 32221 1111 123467789999987 4467999999765 34332 11000000
Q ss_pred ------------------C----CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec-CCceE
Q 011570 309 ------------------L----VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK-SNAGL 364 (483)
Q Consensus 309 ------------------~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~-~~~g~ 364 (483)
. ...+.+.++...+.. ..+++..++..++++++.+.|++. |+++.. +..+.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~-----~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~ 433 (515)
T 2jis_A 359 FQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGD-----QGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN 433 (515)
T ss_dssp ----CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSE
T ss_pred cCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeE
Confidence 0 012333334334322 224566677788889999999887 888764 44455
Q ss_pred EEeeecCchhhc----cChHHH-----HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec-c-CCHHHHHHHHHHHHHH
Q 011570 365 FLWMDLHHLLKE----QTYEAE-----MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA-N-MDDRTMEIALSRITSF 433 (483)
Q Consensus 365 f~~~~l~~~~~~----~~~~~~-----~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~-~-~~~e~l~~~l~~L~~~ 433 (483)
+.+...|..... ..+... ..+.+.+.++ |+........ ....+++|++++ . .++++++.++++|+++
T Consensus 434 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~-G~~~~~~~~~-~~~~~~lRis~~~~~~t~edid~~~~~l~~~ 511 (515)
T 2jis_A 434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKE-GSMMIGYQPH-GTRGNFFRVVVANSALTCADMDFLLNELERL 511 (515)
T ss_dssp EEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHH-TSCEEEEEEE-TTEEEEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhc-CCEEEEEEEE-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 554334432111 111111 1245556654 7543211100 112458999994 4 5999999999999887
Q ss_pred HH
Q 011570 434 ML 435 (483)
Q Consensus 434 l~ 435 (483)
++
T Consensus 512 ~~ 513 (515)
T 2jis_A 512 GQ 513 (515)
T ss_dssp HT
T ss_pred Hh
Confidence 64
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=208.62 Aligned_cols=282 Identities=13% Similarity=0.062 Sum_probs=183.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v 171 (483)
..++++.+|++++ .+++++++|+++++..++.+++++||+|+++.|.|.+....+ +. .|++++.+
T Consensus 84 ~~~le~~lA~l~g----------~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~-~G~~v~~v 152 (415)
T 2fq6_A 84 HFSLQQAMCELEG----------GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSK-LGVTTSWF 152 (415)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGG-GTCEEEEE
T ss_pred HHHHHHHHHHHhC----------CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCcEEEEE
Confidence 4678888888875 246777889999999999999999999999999998877654 33 39999888
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh--cCcEEEEccccccCccCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~--~~~~iI~Deay~~~~~~~~ 249 (483)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+...+ .
T Consensus 153 ~~~-------d~~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~- 214 (415)
T 2fq6_A 153 DPL-------IGADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-F- 214 (415)
T ss_dssp CTT-------CGGGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-S-
T ss_pred CCC-------CHHHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-C-
Confidence 753 67888888753 7899999999999999998 7888999999 9999999999975422 2
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCce-EEEEEecChHHHHHHHHhhh-cCC-CChHHHHHHHHhcCChh
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR-VGIIYSYNDQVVSCARKMSS-FGL-VSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR-iG~li~~~~~l~~~~~~~~~-~~~-~s~~~q~~~~~~l~~~~ 326 (483)
. ++ .+ +.++++.|+||.+|.+|.+ +||++++++ +.+.+..... ++. .++....++...+
T Consensus 215 ~---p~-~~---------g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~~~~~G~~~~~~~a~~~~~~l---- 276 (415)
T 2fq6_A 215 K---AL-DF---------GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVDADTAYITSRGL---- 276 (415)
T ss_dssp C---GG-GG---------TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCCHHHHHHHHHHH----
T ss_pred C---cc-cc---------CCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhhh----
Confidence 1 11 11 3458899999999988765 689998654 4444433322 332 3333232222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC-Cce-eecC----------------CceEEEeeecCchhhccChHHHHHHHHH
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQV-GIG-CLKS----------------NAGLFLWMDLHHLLKEQTYEAEMALWRV 388 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~-~~~~----------------~~g~f~~~~l~~~~~~~~~~~~~~~~~~ 388 (483)
+.+..+.++..++...+.+.|.+. ++. +..| ..+..+++.++.... ..+...+...
T Consensus 277 ---~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~---~~~~~~~l~~ 350 (415)
T 2fq6_A 277 ---RTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLN---NEELANYLDN 350 (415)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCC---HHHHHHHHTT
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCC---HHHHHHHHHh
Confidence 123444455566677777777765 332 2111 134577888874200 0111233332
Q ss_pred HHHhcCeEeeCCCCCC-------------------CCCCCEEEEEeccC-CHHHHHHHHHHHH
Q 011570 389 IINEVKLNVSPGSSFH-------------------CPNPGWFRVCFANM-DDRTMEIALSRIT 431 (483)
Q Consensus 389 Ll~~~gV~v~pg~~f~-------------------~~~~~~iRis~~~~-~~e~l~~~l~~L~ 431 (483)
+ +..++.++.|+.+. ...++.||||++.. ++++++.+.++|+
T Consensus 351 l-~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~ 412 (415)
T 2fq6_A 351 F-SLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA 412 (415)
T ss_dssp C-SSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred C-CcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 2 22345555552211 01246899999863 4555666555554
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=209.17 Aligned_cols=302 Identities=14% Similarity=0.103 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCc---EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH--------HHhhhcC
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDR---IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR--------DLRWRTG 165 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~---i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--------~~~~~~G 165 (483)
.+|++...+++.+.+| .+++. .++++++++++..++.++++|||+|+++.+.|.++.. .+... |
T Consensus 99 ~~lE~~a~~~~a~l~g----~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~-g 173 (490)
T 2a7v_A 99 DEIELLCQRRALEAFD----LDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT-S 173 (490)
T ss_dssp THHHHHHHHHHHHHTT----CCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------
T ss_pred HHHHHHHHHHHHHHcC----CCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHc-C
Confidence 4677555555555555 34442 3455678999999999999999999999999865431 12222 5
Q ss_pred cE--EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc-
Q 011570 166 VQ--LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA- 242 (483)
Q Consensus 166 ~~--~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~- 242 (483)
.. ++++++++ .++.+|++++++++... ++|+|++++|+||+ ..+ +++|.++|+++|+++++|+++.
T Consensus 174 ~~~~~~~~~vd~-~~~~iD~d~le~~l~~~-----~~klIi~~~s~~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~ 242 (490)
T 2a7v_A 174 IFFESMPYKLNP-KTGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp -------CCBCT-TTCSBCHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGH
T ss_pred CeEEEEeccccc-ccCCcCHHHHHHHHhhc-----CCcEEEEcCCCCCC--ccc---HHHHHHHHHHcCCEEEEcccccc
Confidence 44 44444443 35789999999998753 67889888999985 445 8889999999999999999974
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh--------------HHHHHHHHhhhc-
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND--------------QVVSCARKMSSF- 307 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~--------------~l~~~~~~~~~~- 307 (483)
++++.+ ....++ . ...+++.|+||++ .|.|.|+++++++ .+.+.++.....
T Consensus 243 glv~~g-~~~~~~-~----------~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g 308 (490)
T 2a7v_A 243 GLVAAK-VIPSPF-K----------HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS 308 (490)
T ss_dssp HHHHTT-SSCCGG-G----------TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTT
T ss_pred ccccCC-cCCCCC-C----------CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhccc
Confidence 222332 211121 1 1236788999987 4677899999654 244555443222
Q ss_pred --CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-CceEEEeeecCch-hhccChHHHH
Q 011570 308 --GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHL-LKEQTYEAEM 383 (483)
Q Consensus 308 --~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~-~~~~~~~~~~ 383 (483)
+..+.....+++.++.. ......++..+++.++++++.+.|.+.|+++..+ ..+.++|++++.. .. .
T Consensus 309 ~qggp~~~~iaAla~Al~~--~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t~t~lv~vdl~~~g~~------~- 379 (490)
T 2a7v_A 309 LQGGPHNHAIAAVAVALKQ--ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD------G- 379 (490)
T ss_dssp TCCSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCC------H-
T ss_pred CCCCchHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCCCCeEEEEEeCCCCCC------H-
Confidence 22233333333333321 1112235667778889999999999999988653 3457899998642 11 1
Q ss_pred HHHHHHHHhcCeEeeCCCCCCC---CCCCEEEEEecc-----CCHHHHHHHHHHHHHHHHHh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHC---PNPGWFRVCFAN-----MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~---~~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~ 437 (483)
..+..+|++.||.+..+..++. ..++.+||+... .++++++++++.|.+++...
T Consensus 380 ~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 380 ARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp HHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 2244556678999986654442 234679997732 47899999999999988754
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=209.07 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=221.5
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCc-----CCCcEEEeCChhHHHHHHHHHhcC-------------------CCC
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITF-----DPDRIVMSGGATGAHETVAFCLAD-------------------PGD 144 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~-----~~~~i~it~G~~~al~~~~~~l~~-------------------~gd 144 (483)
.|...++..++++++++|+.+.+|.+... .....++|+|+++++..++.+..+ +++
T Consensus 104 ~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 183 (475)
T 3k40_A 104 TWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKL 183 (475)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHE
T ss_pred CccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCe
Confidence 46666678899999999999988721100 013689999999998888766521 346
Q ss_pred eEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHH
Q 011570 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDI 224 (483)
Q Consensus 145 ~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i 224 (483)
.|+++.++|..+...+... |++++.+|+++ ++ +|+++|+++|++...++..+.+|+++.++|+||.+-+ +++|
T Consensus 184 ~vi~s~~~H~s~~~~~~~~-g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~I 256 (475)
T 3k40_A 184 VGYCSDQAHSSVERAGLLG-GVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDEC 256 (475)
T ss_dssp EEEEETTSCHHHHHHHHHH-TCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHH
T ss_pred EEEECCCchHHHHHHHHHc-CCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHHH
Confidence 8999999999999988876 99999999864 46 9999999999876555555788999999999999977 8889
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH-HHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV-VSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l-~~~~~~ 303 (483)
+++|++||+++++|++|+...+.. +.+.....-.. ....+..+++|.++ ....+|+++..++.. .+.+..
T Consensus 257 ~~la~~~~~~lhvD~A~~~~~~~~-~~~~~~~~gi~-------~~Ds~~~~~hK~l~-~p~g~g~l~~~~~~~l~~~~~~ 327 (475)
T 3k40_A 257 GPVGNKHNLWIHVDAAYAGSAFIC-PEYRHLMKGIE-------SADSFNFNPHKWML-VNFDCSAMWLKDPSWVVNAFNV 327 (475)
T ss_dssp HHHHHHTTCEEEEECTTGGGGGGS-GGGGGGGTTGG-------GCSEEEECHHHHSS-CCSSCEEEEESSGGGC------
T ss_pred HHHHHHhCCeEEEeHHhHHHHHhC-HhhHHHhcCcc-------cCCEEEECchhccC-CCCceEEEEEeCHHHHHHHhcC
Confidence 999999999999999998653322 22111111111 12345679999886 445678888865533 222211
Q ss_pred hhhcC----------------CC----ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCc
Q 011570 304 MSSFG----------------LV----SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNA 362 (483)
Q Consensus 304 ~~~~~----------------~~----s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~ 362 (483)
...+. .. ..+.+.++...+. .+.+++..++..++++++.+.|++. |+++..+..
T Consensus 328 ~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~ 402 (475)
T 3k40_A 328 DPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 402 (475)
T ss_dssp ---------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCB
T ss_pred CccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 11110 00 1222333333332 2235666777888889999999987 898876555
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhh
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
...++++++... ....++.++|.++.++.+.|+..+ +..++|+++++ +++++++.++++|+++.++...
T Consensus 403 ~~iv~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~---g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 403 MGLVCFRLKGSN-----ERNEALLKRINGRGHIHLVPAKIK---DVYFLRMAICSRFTQSEDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp TTEEEEEESSCH-----HHHHHHHHHHHHHTSCBCEEEEET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeCCch-----HHHHHHHHHHHhCCcEEEEeeEEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 557777775311 123477888887755566655433 35689999875 4889999999999999877643
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=207.17 Aligned_cols=322 Identities=13% Similarity=0.059 Sum_probs=225.0
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCc------CCCcEEEeCChhHHHHHHHHHhcC-------------------C
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITF------DPDRIVMSGGATGAHETVAFCLAD-------------------P 142 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~------~~~~i~it~G~~~al~~~~~~l~~-------------------~ 142 (483)
..|...++..++++.+++|+.+.+|.+... .....++|+|+++++..++.+..+ +
T Consensus 108 ~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~ 187 (481)
T 4e1o_A 108 FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNA 187 (481)
T ss_dssp SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHT
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccC
Confidence 356666778999999999999998832110 013679999999999888876532 5
Q ss_pred CCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHH
Q 011570 143 GDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLK 222 (483)
Q Consensus 143 gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~ 222 (483)
++.|+++.++|..+...+... |.+++.+|.++ ++.+|+++|+++|++....+..+.+|+++.++|+||.+-+ ++
T Consensus 188 ~~~v~~s~~~H~s~~~~~~~~-g~~~~~v~~~~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~---l~ 261 (481)
T 4e1o_A 188 RLVAYASDQAHSSVEKAGLIS-LVKMKFLPVDD--NFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC---LS 261 (481)
T ss_dssp TEEEEEETTSCHHHHHHHHHH-TCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HH
T ss_pred CeEEEEcCcchHHHHHHHHhC-CCceEEEEcCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---HH
Confidence 679999999999999988875 99999999863 6789999999999876555555788899999999999877 88
Q ss_pred HHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH-HH
Q 011570 223 DIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS-CA 301 (483)
Q Consensus 223 ~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~-~~ 301 (483)
+|+++|++||+++++|++|+...+.. +.+.....-.+ ....+..+++|.++.| .-+|+++..++.... .+
T Consensus 262 ~I~~la~~~~~~lhvDaA~g~~~~~~-~~~~~~~~gi~-------~aDsi~~~~hK~l~~p-~g~g~l~~~~~~~l~~~~ 332 (481)
T 4e1o_A 262 ELGPICAREGLWLHIDAAYAGTAFLC-PEFRGFLKGIE-------YADSFTFNPSKWMMVH-FDCTGFWVKDKYKLQQTF 332 (481)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGGGGS-GGGGGGGTTGG-------GCSEEEECHHHHSSCC-SSCEEEEESBHHHHHTTT
T ss_pred HHHHHHHHcCCeEEeehhhHHHHHhC-hhhHHHhcCcc-------cCCEEEEChHHhcCCC-CceEEEEEeCHHHHHHHh
Confidence 89999999999999999998754333 22222111111 1134556999998754 457777775554322 11
Q ss_pred HHhhhcC--------------------CCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC
Q 011570 302 RKMSSFG--------------------LVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS 360 (483)
Q Consensus 302 ~~~~~~~--------------------~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~ 360 (483)
.....+. ....+.+.++...+. .+.+++..++..++++++.+.|++. |+++..+
T Consensus 333 ~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~ 407 (481)
T 4e1o_A 333 SVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK 407 (481)
T ss_dssp CCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC
T ss_pred cCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 1001110 002333444444432 2235666777888889999999987 8988765
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHh
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~ 437 (483)
....+++++++... ....++.++|.++..+.+.|+.. .+..++|+++++ +++++++.++++|+++.++.
T Consensus 408 ~~~~~v~f~~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~---~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 408 RHLGLVVFRLKGPN-----SLTENVLKEIAKAGRLFLIPATI---QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp CCSSEEEEEESSCH-----HHHHHHHHHHHHHCSSBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceeEEEEEeCCch-----HHHHHHHHHHHhCCeEEEEeeEE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55567888875421 12347788888764455555432 234689999865 37899999999999988764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=200.04 Aligned_cols=294 Identities=15% Similarity=0.193 Sum_probs=192.5
Q ss_pred CcHHHHHHH-HHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 95 GLPEFRNAV-AKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 95 g~~~Lr~~i-a~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
...+|++++ |++++ ..+++++++|+++++..++.++ ++|||+|+++.|+|..+...+... |++++.++
T Consensus 37 ~~~~l~~~~~a~~~g---------~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~-G~~~~~v~ 106 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQ---------NRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWC-GLEPYFID 106 (377)
T ss_dssp HHHHHHHHHHHHTST---------TCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHhC---------CCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHc-CCEEEEEe
Confidence 368999999 99875 2567899999999999999998 899999999999999999988876 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+++ ++|.+|++++++++... +.++|+|+ |+||||.+.+ +++|.++|+ +|++||+|++|+...... .
T Consensus 107 ~~~-~~~~~d~~~l~~~i~~~---~~~tk~v~---~~~~~G~~~~---~~~i~~la~-~~~~vi~D~a~a~g~~~~-~-- 172 (377)
T 3ju7_A 107 ISI-DDWYMDKTVLWDKIEEL---KEEVAIVV---PYATFGSWMN---LEEYEELEK-KGVPVVVDAAPGFGLMNG-G-- 172 (377)
T ss_dssp BCT-TTCSBCHHHHHHHHHHH---GGGEEEEC---CBCGGGBCCC---CHHHHHHHH-TTCCBEEECTTCTTCEET-T--
T ss_pred cCC-ccCCcCHHHHHHHHhcC---CCCceEEE---EECCCCCccC---HHHHHHHHh-cCCEEEEECCCccCCeEC-C--
Confidence 874 46899999999998431 01288776 7889999988 777888888 999999999997432111 1
Q ss_pred chHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhcC--------------CCChHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG--------------LVSSQTQH 316 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~--------------~~s~~~q~ 316 (483)
..+... -.+ +.+.|| +|.++ +| +.|+++++++.+.+.++.+...+ .++.+...
T Consensus 173 ~~~g~~-------~~d--~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa 241 (377)
T 3ju7_A 173 MHYGQD-------FSG--MIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAA 241 (377)
T ss_dssp EETTTT-------CSS--EEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHH
T ss_pred EeccCC-------CCc--EEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHH
Confidence 111000 012 334454 69997 45 68899987888877776654421 13334333
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ceeecCCc--e--EEEeeecCchhhccChHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG---IGCLKSNA--G--LFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---i~~~~~~~--g--~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
++...+.. +....++.++.++++.+.|.+++ +.+.+..+ . .|+.+.++... ...++.+.|
T Consensus 242 ~~~~~l~~-------l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L 308 (377)
T 3ju7_A 242 IGIATMKK-------WDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV------RNKQVIEDL 308 (377)
T ss_dssp HHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS------CHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh------hHHHHHHHH
Confidence 33333322 23333344555566666676653 33332221 1 13344454311 122556655
Q ss_pred HHhcCeEeeCCCC--CCCC--------C---------CCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 390 INEVKLNVSPGSS--FHCP--------N---------PGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 390 l~~~gV~v~pg~~--f~~~--------~---------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
. ++||.++.+.. +... . .+.+||.+.. .++++++.+++.|++++.+.
T Consensus 309 ~-~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 309 K-KQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp H-TTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred H-HCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 5 56999887641 1100 0 1359999965 69999999999998877653
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=197.52 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v 171 (483)
..++++.+|++++. .+.|+ ++++++++..++.+++++||+|+++.|+|+.+...+ +. .|++++.+
T Consensus 60 ~~~l~~~la~~~g~---------~~~v~-~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~-~g~~~~~~ 128 (421)
T 2ctz_A 60 VDVLEKRLAALEGG---------KAALA-TASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKR-LGIEVRFT 128 (421)
T ss_dssp HHHHHHHHHHHHTC---------SEEEE-ESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHH-TTCEEEEC
T ss_pred HHHHHHHHHHHhCC---------CceEE-ecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHH-cCCEEEEE
Confidence 47899999998761 23454 455599999999999999999999999999877765 44 49999888
Q ss_pred -ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc-ccCccCCC
Q 011570 172 -VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY-AATVFTKE 249 (483)
Q Consensus 172 -~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay-~~~~~~~~ 249 (483)
+.+ |++++++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++| +.. +..
T Consensus 129 ~~~~-------d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~~~- 190 (421)
T 2ctz_A 129 SREE-------RPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-YLL- 190 (421)
T ss_dssp CTTC-------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-TSC-
T ss_pred CCCC-------CHHHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-ccC-
Confidence 643 78999988863 7899999999999999999 888999999999999999999 532 322
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEec
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSY 293 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~ 293 (483)
.. + .. ...+++.|+||.+|.+|.|+|++++.
T Consensus 191 ~~---~-~~---------~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 191 RP---L-AW---------GAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp CG---G-GG---------TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred Cc---c-cc---------CCeEEEECCcccccCCCCcEEEEEEe
Confidence 21 1 11 34578899999999899999988884
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=207.77 Aligned_cols=287 Identities=15% Similarity=0.150 Sum_probs=183.7
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH-hcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC-LADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~-l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~ 170 (483)
|..++.+++.+.+.+.+| .+++++++++|++.++..+..+ ..++||+|+++.|+|+.+...++. ..|++++.
T Consensus 105 g~~~~~~~~~~~la~~~g----~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~ 180 (438)
T 1wyu_A 105 GVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLT 180 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHhC----CCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEE
Confidence 444555555555555555 4677899999999443333333 357899999999999988766543 14999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcc---ccccCccC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDE---IYAATVFT 247 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~De---ay~~~~~~ 247 (483)
++.+ ++.+|+++ +. +++++|++++| ||||.+.+ +++|+++|+++|+++|+|- +|+. +.
T Consensus 181 v~~~---~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~--~~ 241 (438)
T 1wyu_A 181 LPLE---GGRTPLPE----VG------EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGV--LK 241 (438)
T ss_dssp ECCB---TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGT--BC
T ss_pred EcCc---CCccCHHH----hC------CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccC--cC
Confidence 9872 34677766 32 37899999999 99999997 8888999999999999552 2321 11
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCcccc----CCCCceEEEEEecChHHHHHHH---------------------
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM----GFPGFRVGIIYSYNDQVVSCAR--------------------- 302 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~----g~~GlRiG~li~~~~~l~~~~~--------------------- 302 (483)
....+ +..+++.| ||.| ++.|.++||++++++ +.+.+.
T Consensus 242 ------~~~~~---------g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~l~ 304 (438)
T 1wyu_A 242 ------PPGAY---------GADIAVGD-GQSLGLPMGFGGPHFGFLATKKA-FVRQLPGRLVSETVDVEGRRGFILTLQ 304 (438)
T ss_dssp ------CHHHH---------TCSEEEEE-CTTTTCCCGGGCSCCEEEEECGG-GGGGCCSCCEEEEEBTTSCEEEEECCG
T ss_pred ------CCccC---------CCCEEEEC-CcccCCCccCCCCCeeEEEEcHH-HHHhCCCceeccccccCCCcceeeecc
Confidence 11122 22244555 5654 356779999999543 332221
Q ss_pred -------HhhhcCCC---ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEEeeecC
Q 011570 303 -------KMSSFGLV---SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLH 371 (483)
Q Consensus 303 -------~~~~~~~~---s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~ 371 (483)
......++ +......++..+.... .+.+++..+++.++++++.+.|+++ |+++..+. .+|.++.+.
T Consensus 305 ~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~--~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~ 381 (438)
T 1wyu_A 305 AREQYIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALA 381 (438)
T ss_dssp GGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEE
T ss_pred ccccccchhcccCCccchHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEe
Confidence 00111112 1122111111121111 2235667778888999999999998 99887654 334333332
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEe--eCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNV--SPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v--~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
... ...++.+.|.+ +||.+ .++..|. ++++||+++. .+++++++++++|++++
T Consensus 382 ~~~------~~~~~~~~L~~-~gi~v~~~~~~~~~---~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 382 LPK------DPEAVRRALAE-RGFHGATPVPREYG---ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp CSS------CHHHHHHHHHH-TTCCCCEECCTTSC---SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred CCC------CHHHHHHHHHH-CCceeccccccccC---CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 111 12377888875 59998 7777664 6799999975 58999999999998764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=202.72 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=179.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE---eCChhHHHHHHHHHhcCCCCeEEEeC-CCCcChHHHH---
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM---SGGATGAHETVAFCLADPGDAFLVPT-PYYPGFDRDL--- 160 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~~~~~~--- 160 (483)
..|++. |..+|++.+|++++ .+..++ ++|+++++..++.++++|||+|++++ |.|+.+...+
T Consensus 68 y~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~ 136 (427)
T 3i16_A 68 YGYGDI-GRDSLDAVYARVFN----------TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGIT 136 (427)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCS
T ss_pred CCCCHH-HHHHHHHHHHHHhC----------CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhcc
Confidence 346554 57888888888876 223344 78889999999999999999999999 9999887443
Q ss_pred --------hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCcCCCCHHHHHHHHHHH
Q 011570 161 --------RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN----PSNPLGTFLDRETLKDIVSFI 228 (483)
Q Consensus 161 --------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~----P~NPtG~~~~~~~l~~i~~~a 228 (483)
+.. |++++.++++++ +.+|++++++++++ .+++|+|++++ |+||||.+ .++++|+++|
T Consensus 137 ~~~~~~~l~~~-G~~~~~v~~~~~--g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i---~dl~~i~~la 206 (427)
T 3i16_A 137 ENSNMGSLKEF-GINYKQVDLKED--GKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLI---EDIKSIVDCV 206 (427)
T ss_dssp CCCSSCCTGGG-TCEEEECCCCTT--SSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCH---HHHHHHHHHH
T ss_pred ccchHHHHHHc-CCEEEEecCccC--CCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccH---HHHHHHHHHH
Confidence 443 999999998653 47899999999872 12799999999 99999876 5699999999
Q ss_pred hh--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhh
Q 011570 229 NE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 229 ~~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~ 305 (483)
++ +|+++|+|++|+.+.+.. .+ . .+ +..++++|+||.+|.+| .+.||+++ ++.+.+.+....
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~-~p-~---~~---------gaDiv~~S~sK~lgg~g~~~gG~i~~-~~~li~~l~~~~ 271 (427)
T 3i16_A 207 KNIRKDIICFVDNCYGEFMDTK-EP-T---DV---------GADLIAGSLIKNIGGGIAPTGGYLAG-TKDCIEKTSYRL 271 (427)
T ss_dssp HHHCTTSEEEEECTTTTTSSSS-CG-G---GG---------TCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCccccccC-Cc-c---cc---------CCeEEEecCcccCCCCCCceEEEEEE-CHHHHHHHHHhc
Confidence 99 999999999998764333 21 1 11 34588999999998555 66799999 566666655422
Q ss_pred h-c--CC-CCh-HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce----EEEeeecCchhhc
Q 011570 306 S-F--GL-VSS-QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG----LFLWMDLHHLLKE 376 (483)
Q Consensus 306 ~-~--~~-~s~-~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g----~f~~~~l~~~~~~ 376 (483)
. . +. +++ +. ++..+++.. .....+.++..+++.++.+.|+++|+++++.... ..+.+.+...
T Consensus 272 ~~~~~g~~~~~~~~--~a~~~l~gl----~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~~i~~i~l~~~--- 342 (427)
T 3i16_A 272 TVPGIGGECGSTFG--VVRSMYQGL----FLAPHISMEALKGAILCSRIMELAGFEVMPKYDEKRSDIIQSIKFNDK--- 342 (427)
T ss_dssp SCTTTGGGCCCCTT--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCEEEECSSH---
T ss_pred ccCccCccCCccHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCccEEEEEEECCH---
Confidence 1 1 11 111 11 011111111 1235566777888899999999999888654322 2555666531
Q ss_pred cChHHHHHHHHHHHHh
Q 011570 377 QTYEAEMALWRVIINE 392 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~ 392 (483)
+....|++.|...
T Consensus 343 ---~~~~~f~~~l~~~ 355 (427)
T 3i16_A 343 ---DKLIEFCKGIQTG 355 (427)
T ss_dssp ---HHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHhhc
Confidence 2344677776654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=190.78 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=191.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-------cCCCCeEEEeCCCCcChHHHHhh
Q 011570 90 FQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-------ADPGDAFLVPTPYYPGFDRDLRW 162 (483)
Q Consensus 90 Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-------~~~gd~Vlv~~P~y~~~~~~~~~ 162 (483)
|.+..+..++++++|++++ . +++++++++++++..++.++ +++||+|+++.|+|..+...+..
T Consensus 30 ~~~~~~~~~l~~~la~~~~--------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~ 99 (390)
T 3b8x_A 30 FTMGEYVKQYETQFAKTFG--------S--KYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ 99 (390)
T ss_dssp CSSCHHHHHHHHHHHHHHT--------C--SEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHC--------C--CcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH
Confidence 4445578999999999986 1 25677777778999999998 88999999999999999998887
Q ss_pred hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 163 RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 163 ~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
. |.+++.++++++ +|.+|++.|++++.+ ++++|+++| ++|...+ +++|.++|+++|+++|+|++|+
T Consensus 100 ~-g~~~~~~~~~~~-~~~~d~~~l~~~i~~------~~~~v~~~~---~~g~~~~---~~~i~~l~~~~~~~li~D~a~~ 165 (390)
T 3b8x_A 100 Y-GLRVKFVDIDIN-TLNIDIESLKEAVTD------STKAILTVN---LLGNPNN---FDEINKIIGGRDIILLEDNCES 165 (390)
T ss_dssp T-TCEEEEECBCTT-TCSBCHHHHHHHCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHTTSCCEEEEECTTC
T ss_pred c-CCEEEEEecCcc-ccCcCHHHHHHHhCc------CCeEEEEEC---CccChhh---HHHHHHHHHHcCCEEEEECcCc
Confidence 5 999999998754 478999999998853 789998885 4555555 8889999999999999999998
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEe--cCccccCCCCceEEEEEecChHHHHHHHHhhhcC------------
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVY--SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG------------ 308 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~--S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~------------ 308 (483)
...... .. .+. ...++... ..+|.++ +| +.|+++++++.+.+.++.....+
T Consensus 166 ~g~~~~-~~-----~~g-------~~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~ 230 (390)
T 3b8x_A 166 MGATFN-NK-----CAG-------TFGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVT 230 (390)
T ss_dssp TTCEET-TE-----ETT-------SSSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTT
T ss_pred ccCEEC-Cc-----ccc-------cccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHHHHHhcCCCcccccccccc
Confidence 421111 10 010 01112211 2345553 33 34999996656655544322111
Q ss_pred -----------------C----CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC--CceE
Q 011570 309 -----------------L----VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS--NAGL 364 (483)
Q Consensus 309 -----------------~----~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~--~~g~ 364 (483)
. ++.+...++...+ +++++..++.++.++++.+.|.++ |+++..+ ..++
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 303 (390)
T 3b8x_A 231 GVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSW 303 (390)
T ss_dssp EECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCC
T ss_pred ccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCccc
Confidence 0 2333333222222 224556667778888899999887 7776543 2333
Q ss_pred -EEeeecCchhhccChHHHHHHHHHHHHhcCeEeeC---CCCCCC-C--C-----------------CCEEEEEecc-CC
Q 011570 365 -FLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSP---GSSFHC-P--N-----------------PGWFRVCFAN-MD 419 (483)
Q Consensus 365 -f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~p---g~~f~~-~--~-----------------~~~iRis~~~-~~ 419 (483)
.+++.++.... . ...++.+.|. ++||.+++ |+.+.. + . .+.+||++.. .+
T Consensus 304 ~~~~i~~~~~~~-~---~~~~l~~~L~-~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t 378 (390)
T 3b8x_A 304 FGFSFIIKKDSG-V---IRKQLVENLN-SAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIEL 378 (390)
T ss_dssp CEEEEEECTTSC-C---CHHHHHHHHH-HTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCC
T ss_pred EEEEEEecCcCc-c---cHHHHHHHHH-HCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCC
Confidence 35556652100 0 1235666665 56999886 332211 0 0 1359999976 59
Q ss_pred HHHHHHHHHHH
Q 011570 420 DRTMEIALSRI 430 (483)
Q Consensus 420 ~e~l~~~l~~L 430 (483)
+++++.+++.|
T Consensus 379 ~~di~~i~~~l 389 (390)
T 3b8x_A 379 FDEIDYLREVL 389 (390)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998876
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-22 Score=199.36 Aligned_cols=254 Identities=16% Similarity=0.116 Sum_probs=178.7
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE---eCChhHHHHHHHHHhcCCCCeEEEeC-CCCcChHHHH---
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM---SGGATGAHETVAFCLADPGDAFLVPT-PYYPGFDRDL--- 160 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~~~~~~--- 160 (483)
..|++. |..+|++.+|++++ .+..++ ++|+++++..++.++++|||+|+++. |.|..+...+
T Consensus 54 ~~y~~~-~~~~Le~~lA~l~g----------~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~ 122 (409)
T 3jzl_A 54 YGYDDE-GRDTLERVYATVFK----------TEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIR 122 (409)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSS
T ss_pred CCCChh-HHHHHHHHHHHHhC----------CCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcc
Confidence 456654 57888998888876 234444 88899999999999999999999998 9999887543
Q ss_pred -------hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCcCCCCHHHHHHHHHHHh
Q 011570 161 -------RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN----PSNPLGTFLDRETLKDIVSFIN 229 (483)
Q Consensus 161 -------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~----P~NPtG~~~~~~~l~~i~~~a~ 229 (483)
+.. |++++.+++++ ++.+|++++++++++ ++++|++++ |+||||.+. ++++|+++|+
T Consensus 123 g~~~~~l~~~-G~~~~~v~~~~--~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~---~l~~I~~la~ 190 (409)
T 3jzl_A 123 KQGQGSLKDF-HIGYSSVPLLE--NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIE---KIKEMIVFVK 190 (409)
T ss_dssp SSSSSCTGGG-TCEEEECCCCT--TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHH---HHHHHHHHHH
T ss_pred cchhhHHHHc-CCEEEEeCCCC--CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccc---cHHHHHHHHH
Confidence 444 99999999865 468999999998863 789999999 999998774 5899999999
Q ss_pred h--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhh-
Q 011570 230 E--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMS- 305 (483)
Q Consensus 230 ~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~- 305 (483)
+ +|+++|+|++|+.+.+.. .+ .. .+.+++++|+||.+|.+| .+.||+++ ++.+.+.+....
T Consensus 191 ~~~~~~~livD~a~~~~~~~~-~p-~~------------~g~Div~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~ 255 (409)
T 3jzl_A 191 NINPEVIVFVDNCYGEFVEYQ-EP-PE------------VGADIIAGSLIKNPGGGLAKTGGYIAG-KEALVDLCGYRLT 255 (409)
T ss_dssp HHCTTCEEEEECTTCTTTSSC-CS-GG------------GTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHS
T ss_pred hhCCCCEEEEeCCcccccccC-Cc-cc------------cCCeEEEECccccCCccCCceEEEEEe-CHHHHHHHHHHhc
Confidence 9 999999999998764333 21 11 134588999999998555 44699999 566666655422
Q ss_pred h--cC--CCChHH-HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc----eEEEeeecCchhhc
Q 011570 306 S--FG--LVSSQT-QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA----GLFLWMDLHHLLKE 376 (483)
Q Consensus 306 ~--~~--~~s~~~-q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~----g~f~~~~l~~~~~~ 376 (483)
. .+ ....+. ..++...+ .....++++..+++.++.+.|+++|+++++... ...+.+.+.+.
T Consensus 256 ~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~v~p~~~~~~~~~i~~i~l~~~--- 325 (409)
T 3jzl_A 256 TPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNK--- 325 (409)
T ss_dssp CTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSCCEEECSCH---
T ss_pred cccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCccEEEEEEeCCH---
Confidence 1 10 111111 12222211 123455666788889999999999988865422 22455566531
Q ss_pred cChHHHHHHHHHHHHh
Q 011570 377 QTYEAEMALWRVIINE 392 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~ 392 (483)
+....|++.|...
T Consensus 326 ---~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 326 ---EKMVAFAQAIQAA 338 (409)
T ss_dssp ---HHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHhc
Confidence 2344677777654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=199.07 Aligned_cols=254 Identities=17% Similarity=0.131 Sum_probs=177.3
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE---eCChhHHHHHHHHHhcCCCCeEEEeC-CCCcChHHH----
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM---SGGATGAHETVAFCLADPGDAFLVPT-PYYPGFDRD---- 159 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i---t~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~~~~~---- 159 (483)
..|+++ |..+|++.+|++++ .+..++ ++|+++++..++.++++|||+|++++ |.|..+...
T Consensus 69 y~Y~~~-g~~~Le~~lA~l~g----------~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~ 137 (427)
T 3hvy_A 69 YGYNDI-GRDSLDRVYANIFN----------TESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMD 137 (427)
T ss_dssp TCTTCH-HHHHHHHHHHHHHT----------CSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCC
T ss_pred CCCCch-hHHHHHHHHHHHhC----------CCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccc
Confidence 456655 67888888888876 234455 78889999999999999999999999 999887633
Q ss_pred -------HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC----CCCCCcCCCCHHHHHHHHHHH
Q 011570 160 -------LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN----PSNPLGTFLDRETLKDIVSFI 228 (483)
Q Consensus 160 -------~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~----P~NPtG~~~~~~~l~~i~~~a 228 (483)
++.. |++++.++. + ++.+|++++++++++ .+++|+|++++ |+||||.+ .++++|+++|
T Consensus 138 ~~~~~~~l~~~-G~~~~~v~~-~--~~~~d~e~l~~~i~~----~~~tklV~i~~s~gyp~nptg~v---~dl~~i~~ia 206 (427)
T 3hvy_A 138 DSKKVGSLREY-GVKYKMVDL-K--DGKVDINTVKEELKK----DDSIKLIHIQRSTGYGWRKSLRI---AEIAEIIKSI 206 (427)
T ss_dssp TTCCSCCTGGG-TCEEEECCC-B--TTBCCHHHHHHHHHH----CTTEEEEEEESSCCSSSSCCCCH---HHHHHHHHHH
T ss_pred cchhhhHHHHc-CCEEEEecC-C--CCCcCHHHHHHHhhC----CCCCEEEEEECCCCCCCCccccH---HHHHHHHHHH
Confidence 3444 999999987 2 467999999999973 13799999999 99999876 5599999999
Q ss_pred hh--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhh
Q 011570 229 NE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 229 ~~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~ 305 (483)
++ +|+++|+|++|+.+.+.. .+ . . .+..++++|+||.+|.+| .+.||+++ ++.+.+.+....
T Consensus 207 ~~~~~g~~livD~a~~~~~~~~-~p-~---~---------~gaDiv~~S~sK~lgg~g~~~GG~i~~-~~~li~~l~~~~ 271 (427)
T 3hvy_A 207 REVNENVIVFVDNCYGEFVEEK-EP-T---D---------VGADIIAGSLIKNIGGGIATTGGYIAG-KEEYVTQATFRV 271 (427)
T ss_dssp HHHCSSSEEEEECTTCTTTSSS-CG-G---G---------GTCSEEEEETTSGGGTTTCCSCEEEEE-CHHHHHHHHHHH
T ss_pred HHhCCCCEEEEECCccccccCC-CC-c---c---------cCCeEEEECCcccccccccceEEEEEE-CHHHHHHHHHHh
Confidence 99 899999999998764333 21 1 1 134588999999998544 45689998 566666665432
Q ss_pred h-cCC---CCh-HH-HHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCce----EEEeeecCchhh
Q 011570 306 S-FGL---VSS-QT-QHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAG----LFLWMDLHHLLK 375 (483)
Q Consensus 306 ~-~~~---~s~-~~-q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g----~f~~~~l~~~~~ 375 (483)
. .+. .++ +. ..++..-+ .....+.++..++..++.+.|+++|+++++.... ..+.+.+...
T Consensus 272 ~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~g~~V~p~~~~~~~~li~~~~l~~~-- 342 (427)
T 3hvy_A 272 TVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELAGFDVLPKYNDKRTDIIQAIKFNDE-- 342 (427)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCEEESCTTSCCSSSEEEEECSSH--
T ss_pred hcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhCCCeecCCCCCCCceEEEEEeCCCH--
Confidence 1 110 111 22 11221111 1234556677888889999999999888654322 2566666531
Q ss_pred ccChHHHHHHHHHHHH
Q 011570 376 EQTYEAEMALWRVIIN 391 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~ 391 (483)
+....|++.|..
T Consensus 343 ----~~~~~f~~~l~~ 354 (427)
T 3hvy_A 343 ----KKLIDFIKGIQT 354 (427)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhcc
Confidence 223466666654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=211.57 Aligned_cols=309 Identities=12% Similarity=0.043 Sum_probs=195.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-HhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-LRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-~~~~~G~~~~~v~~~ 174 (483)
..++++.+|++++ . ...+++++|+++++..++.+++++||.|+++.|+|.++... +... |++++.++.+
T Consensus 175 i~e~e~~lA~~~g--------a-e~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~-Ga~~v~v~~~ 244 (730)
T 1c4k_A 175 AVAAEKHAARVYN--------A-DKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMA-GGRPVYLQTN 244 (730)
T ss_dssp HHHHHHHHHHHTT--------C-SEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTT-CCEEEEECEE
T ss_pred HHHHHHHHHHHHC--------C-CcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHC-CCEEEEEeCC
Confidence 5789999999876 2 24588999999999999999999999999999999988887 6664 9999988765
Q ss_pred CCCCcc----cCHHHH-----HHHHHHH-Hh--cCCce-eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEcccc
Q 011570 175 SSNDFK----VTMEAL-----EAAYEKA-QE--SNIRI-KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIY 241 (483)
Q Consensus 175 ~~~~~~----~d~~~l-----~~~i~~~-~~--~~~~~-~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay 241 (483)
.+ +|. +|++.| ++++++. .. ...++ ++|++++| ||||.+.+ +++|+++|+++|+++|+||+|
T Consensus 245 ~~-~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh 319 (730)
T 1c4k_A 245 RN-PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAW 319 (730)
T ss_dssp EC-TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTT
T ss_pred cc-ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEccc
Confidence 32 333 688888 7766531 00 01112 89999999 58999988 889999999999999999999
Q ss_pred ccC-ccCCCCCcc--hHHHhhhhccccCCCeEEEEecCccccCCCCceE-EEEEecChHH--------HHHHHHh-hhc-
Q 011570 242 AAT-VFTKESSFV--SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRV-GIIYSYNDQV--------VSCARKM-SSF- 307 (483)
Q Consensus 242 ~~~-~~~~~~~~~--s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRi-G~li~~~~~l--------~~~~~~~-~~~- 307 (483)
+.. .|.. ... +...... . ..+.++++++.|+||++ +|++. |+++.+++.+ ...+... ..+
T Consensus 320 ~~~~~f~~--~~~g~~~l~~~~-~-g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~ 393 (730)
T 1c4k_A 320 VGYEQFIP--MMRNSSPLLIDD-L-GPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFM 393 (730)
T ss_dssp CCGGGSSG--GGGGGCTTSCCC-C-CTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHS
T ss_pred ccccccCc--ccCCcCcccccc-c-CCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhC
Confidence 743 2332 111 1111100 0 00235789999999986 56665 4665543322 1122221 111
Q ss_pred -CCCChHHHHHHH---HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCceeecCC--------------------
Q 011570 308 -GLVSSQTQHLIA---TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ--VGIGCLKSN-------------------- 361 (483)
Q Consensus 308 -~~~s~~~q~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~--~gi~~~~~~-------------------- 361 (483)
+..+.....++. .++... ...+..+++.++.+.+++.|.+ .|+++..+.
T Consensus 394 stsp~~~~iaal~aA~~~l~~~-----~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~ 468 (730)
T 1c4k_A 394 STSPFYPMYAALDVNAAMQEGE-----AGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNID 468 (730)
T ss_dssp CSSCCHHHHHHHHHHHHHHSHH-----HHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGG
T ss_pred CCCCcHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccch
Confidence 223333333222 222221 1233345566666777788877 377665432
Q ss_pred -----------------ce-EE-----EeeecCch--h----hccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEE
Q 011570 362 -----------------AG-LF-----LWMDLHHL--L----KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFR 412 (483)
Q Consensus 362 -----------------~g-~f-----~~~~l~~~--~----~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iR 412 (483)
.+ ++ +.+.+|.. . ..... ....+.+.|.+ +||.+... +.+.+|
T Consensus 469 ~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~-~~~~l~~~L~e-~GI~v~~~------~~~~ir 540 (730)
T 1c4k_A 469 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGV-PATIVANYLRD-HGIIPEKS------DLNSIL 540 (730)
T ss_dssp GGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCC-CHHHHHHHHHH-TTCCCSEE------CSSEEE
T ss_pred hhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCC-CHHHHHHHHHH-CCcEEEEC------CCCeEE
Confidence 11 22 45555420 0 00011 12356666665 59987643 245799
Q ss_pred EEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 413 VCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 413 is~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
++++. .++++++.++++|+++.+...
T Consensus 541 ~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 541 FLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99865 589999999999999887663
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=201.63 Aligned_cols=345 Identities=12% Similarity=0.109 Sum_probs=211.2
Q ss_pred CCCCcccccchhhh--hc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC
Q 011570 44 NPNGVIQMGLAENL--LC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP 119 (483)
Q Consensus 44 ~~~~~i~l~~~~n~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~ 119 (483)
....+||+..+... ++ ++.+.+++.+.... .. ......|+. ....+|++++++.+.+..+ ...
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~-----~~---~~~~~~~~~-~~~~~l~~~la~~l~~~~~----~~~ 127 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV-----ST---FINRPALGI-LPPENFVEKLRESLLSVAP----KGM 127 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGH-----HH---HHCCCCTTT-SCBTTHHHHHHHTGGGGCC----TTC
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhh-----cc---ccccccccc-ccHHHHHHHHHHHHHHhCC----CCc
Confidence 34568899877543 22 45566655541100 00 001112432 2357899999997776533 357
Q ss_pred CcEEEeCChhHHHHHHHHHhc--------C-----------------CC---CeEEEeCCCCcChHHHHhhhcCcE----
Q 011570 120 DRIVMSGGATGAHETVAFCLA--------D-----------------PG---DAFLVPTPYYPGFDRDLRWRTGVQ---- 167 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~--------~-----------------~g---d~Vlv~~P~y~~~~~~~~~~~G~~---- 167 (483)
++|++++|+++|+..++.++. . || +.|++.+++|+++........|..
T Consensus 128 ~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~ 207 (472)
T 1ohv_A 128 SQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHK 207 (472)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHH
T ss_pred CEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccc
Confidence 899999999999999998763 1 46 899999999987665443322321
Q ss_pred ---------EEEeecC--C-CCC--c-----ccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHH
Q 011570 168 ---------LVPVVCD--S-SND--F-----KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSF 227 (483)
Q Consensus 168 ---------~~~v~~~--~-~~~--~-----~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~ 227 (483)
.+++|.. . ... + ..|++.|+++|++....+.++++|++...+|+||. +.+.+.+++|.++
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l 287 (472)
T 1ohv_A 208 IDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDI 287 (472)
T ss_dssp TTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHH
T ss_pred cCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHH
Confidence 1223210 0 000 1 12688898888754222226777777666888997 5689999999999
Q ss_pred HhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc
Q 011570 228 INEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF 307 (483)
Q Consensus 228 a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~ 307 (483)
|++||+++|+||+|.++.+.+ .+.+...+.- ..... +.||||.+ ++| ||++ ++.+.. ......+
T Consensus 288 ~~~~g~lli~DEv~~g~g~~g--~~~~~~~~gv-----~~~~D--i~t~sK~~-l~G---G~~~--~~~~~~-~~~~~~~ 351 (472)
T 1ohv_A 288 SRKHGCAFLVDEVQTGGGSTG--KFWAHEHWGL-----DDPAD--VMTFSKKM-MTG---GFFH--KEEFRP-NAPYRIF 351 (472)
T ss_dssp HHHTTCEEEEECTTTTTTTTS--SSSGGGGGCC-----SSCCS--EEEECGGG-SSE---EEEE--CGGGSC-SSSSSSC
T ss_pred HHHhCCEEEEeCcccCCCCCC--CchhccccCC-----CCCCC--EEEEcccc-ccC---CccC--chhhcc-ccccccc
Confidence 999999999999998643332 2223222210 10011 34899995 455 7776 343321 1111111
Q ss_pred --CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-----C-ceeecCCceEEEeeecCchhhccCh
Q 011570 308 --GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-----G-IGCLKSNAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 308 --~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----g-i~~~~~~~g~f~~~~l~~~~~~~~~ 379 (483)
...+++++.++.++|+.. .+ ....++++++++++.+.|.++ + +....+.| .|++++++..
T Consensus 352 ~T~~~~~~~~aaa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g-~~~~~~~~~~------ 419 (472)
T 1ohv_A 352 NTWLGDPSKNLLLAEVINII---KR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRG-TFCSFDTPDE------ 419 (472)
T ss_dssp CSSSSCHHHHHHHHHHHHHH---HH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEET-TEEEEECSSH------
T ss_pred CccCccHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCc-eEEEEEeCCh------
Confidence 235777887776666421 11 123345555556666666543 1 33344554 5777787642
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.....++..|++ +||.+.|+. .+++||+++. .+++++++++++|++++++
T Consensus 420 ~~~~~~~~~l~~-~Gv~~~~~g------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 420 SIRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHHHHHHHHHH-TTEECEEET------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH-CCeEEecCC------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 123478888885 699998852 4689998875 5999999999999998864
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-21 Score=194.64 Aligned_cols=253 Identities=17% Similarity=0.137 Sum_probs=170.7
Q ss_pred HHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeC-CCCcChHHHHh----------hhcCcEE
Q 011570 100 RNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPT-PYYPGFDRDLR----------WRTGVQL 168 (483)
Q Consensus 100 r~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~-P~y~~~~~~~~----------~~~G~~~ 168 (483)
++++.+++.+.+| .+....+++++ ++++++..++.++++|||+|+++. |+|..+...+. .. |+++
T Consensus 67 ~~~l~~~la~~~g--~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~-G~~~ 142 (431)
T 3ht4_A 67 RDTLEKVYADVFG--AEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY-NIGY 142 (431)
T ss_dssp HHHHHHHHHHHTT--CSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG-TCEE
T ss_pred HHHHHHHHHHHhC--CCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHc-CCEE
Confidence 4455555544444 21122234455 568999999999999999999998 99999886553 33 9999
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEe-CCCCCCcCCCCHHHHHHHHHHHhh--cCcEEEEccccccCc
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLIT-NPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATV 245 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~-~P~NPtG~~~~~~~l~~i~~~a~~--~~~~iI~Deay~~~~ 245 (483)
+.++.++ ++.+|+++|++++++ ++++|+++ +||||+|.+.+.+++++|+++|++ +|+++|+||+|+.+.
T Consensus 143 ~~v~~~~--~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 143 NAVPLTE--GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp EECCBCT--TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred EEeCCCC--CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 9999875 468999999998863 78999999 599999999999999999999999 999999999999865
Q ss_pred cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhhhc---CC-CCh-HH-HHHH
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMSSF---GL-VSS-QT-QHLI 318 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~~~---~~-~s~-~~-q~~~ 318 (483)
+.. .+ . . ....++++|+||.+|. .+...||+++ ++.+.+.+...... +. .++ +. ..++
T Consensus 215 ~~~-~~-~---~---------~g~Di~~~S~sK~lgg~~~~~GG~v~~-~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~ 279 (431)
T 3ht4_A 215 EEQ-EP-C---H---------VGADLMAGSLIKNPGGGIVKTGGYIVG-KEQYVEACAYRLTSPGIGAEAGASLYSLQEM 279 (431)
T ss_dssp SSC-CG-G---G---------TTCSEEEEETTSGGGTTTCSSCEEEEE-CHHHHHHHHHHHSCTTTTTSCSCCCSCSHHH
T ss_pred cCC-Cc-c---c---------cCCeEEEcCccccCCCCCCCceEEEEe-cHHHHHHHHHHhccCCcccccCccHHHHHHH
Confidence 443 21 1 1 1334789999999652 1133399999 56666655442211 10 111 11 1111
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHHHHHHHHHHHh
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAEMALWRVIINE 392 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~ 392 (483)
...+ .....+.++..++..++.+.|+++|+++.+.. .+..+.+.++.. ....++++.|.+.
T Consensus 280 ~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g~~v~p~~~~~~~~li~~i~l~~~------~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 280 YQGF-------FLAPHVAGQALKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDK------DRMIAFCQAIQYA 344 (431)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCCEESCTTSCCSSSCCEEECCCH------HHHHHHHHHHHHT
T ss_pred HhHh-------hhHHHHHHHHHHHHHHHHHHHHhCcCEecCCCCCCCccEEEEEEeCCH------HHHHHHHHHHHhc
Confidence 1111 11344556677788889999998888775432 223555666532 2234677777654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=205.15 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=133.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..++++.++++++ ..+.+++++|+++++..++.++++|||.|+++.|+|.++...+... |++++.++.+.
T Consensus 207 v~~~ee~la~l~G---------~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~-G~~~v~v~~~~ 276 (755)
T 2vyc_A 207 FGESEKYAARVFG---------ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLT-GAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHH-CCEEEEECCCB
T ss_pred HHHHHHHHHHHhC---------CCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHc-CCEEEEEeCCC
Confidence 4677777887776 2356889999999999999999999999999999999988888876 99999998764
Q ss_pred CCCcc----c-----CHHHHHHHHHHH----HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 176 SNDFK----V-----TMEALEAAYEKA----QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 176 ~~~~~----~-----d~~~l~~~i~~~----~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
+ +|. + |++.|++++++. .+++.++++++++|| ||||.+.+ +++|+++|+++|++|++||+|+
T Consensus 277 ~-~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~ 351 (755)
T 2vyc_A 277 N-RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWY 351 (755)
T ss_dssp C-TTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTC
T ss_pred C-ccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCc
Confidence 3 333 4 999999999752 112334569999999 79999988 8889999999999999999997
Q ss_pred cCc-cCCCC-CcchHHHhhhhccccCCCeEEEEecCccccCCCCce-EEEEEecCh
Q 011570 243 ATV-FTKES-SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFR-VGIIYSYND 295 (483)
Q Consensus 243 ~~~-~~~~~-~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlR-iG~li~~~~ 295 (483)
... +.... +..++ ... ..+...++++++.|+||++ +|++ .|+++.+++
T Consensus 352 ~~~~~~~~~~~~~~~--~g~-~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~ 402 (755)
T 2vyc_A 352 GYARFNPIYADHYAM--RGE-PGDHNGPTVFATHSTHKLL--NALSQASYIHVREG 402 (755)
T ss_dssp TTGGGCGGGTTSSSS--CSC-CCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECC
T ss_pred hhcccCcccCCcchh--cCC-cCCccCCCeEEEECccccc--cCcCCeeeeeecCc
Confidence 532 32100 11111 110 0001236788999999985 5666 567766443
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-23 Score=213.46 Aligned_cols=335 Identities=11% Similarity=0.052 Sum_probs=205.6
Q ss_pred CCCCCcccccchhhh--hc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcC
Q 011570 43 KNPNGVIQMGLAENL--LC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFD 118 (483)
Q Consensus 43 ~~~~~~i~l~~~~n~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~ 118 (483)
.....+||+..+... ++ .+.+.+++.+.... .....|+. ....+|.+.|++++. .
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~-----------~~~~~~~~-~~~~~Lae~L~~~~p---------~ 155 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV-----------GLNLSTQT-ENEALFAEAVCDRFP---------S 155 (465)
Confidence 344567888877653 22 34444444332111 01123432 234667777776652 3
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhh---hcCc--EEEEeecCCCCCcccCHHHHHHHHH
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRW---RTGV--QLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~---~~G~--~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
.+.+++++++++++..++..+. ..++.|++.+++|.++...... ..|+ .++.++. -|++.|+++++
T Consensus 156 ~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~ 228 (465)
T 2yky_A 156 IDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLK 228 (465)
Confidence 5789999999999999987752 3458999999999775543220 0133 2333332 27888998886
Q ss_pred HHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeE
Q 011570 192 KAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~v 270 (483)
+. +.++++|++...+|+||.++ +.+.+++|.++|++||+++|+||+|. +. .+ . ....... +..
T Consensus 229 ~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r-~g-~-~~a~~~~---------gv~ 292 (465)
T 2yky_A 229 RH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SR-LS-G-GGAQEML---------GIS 292 (465)
Confidence 42 13677776654466699655 68889999999999999999999998 52 22 1 1111111 111
Q ss_pred EEEecCccccCCCCceEEEEEecChHHHHHHHH-------hhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-------MSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 271 i~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
.-+.||||.+| +|+|+||++++ +.+.+.+.. ....+..+++++.++.+.|+.-. + ....+++.++.
T Consensus 293 pDi~t~sK~lg-~G~piG~v~~~-~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~---~--~~~~~~~~~~~ 365 (465)
T 2yky_A 293 ADLTTLGKYIG-GGMSFGAFGGR-RDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY---T--RQAASDLSASG 365 (465)
Confidence 22448999999 59999999995 555555433 11123467778877766665311 0 12233444444
Q ss_pred HHHHHhhhcC----CceeecCCceEEEeeecCc-hhhc------cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEE
Q 011570 344 KAFTWGLSQV----GIGCLKSNAGLFLWMDLHH-LLKE------QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFR 412 (483)
Q Consensus 344 ~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~-~~~~------~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iR 412 (483)
+++.+.|+++ ++....+..|.++|+.++. .... ........++..+++ +||++.|+. |. .
T Consensus 366 ~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~~-~~------~- 436 (465)
T 2yky_A 366 DRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPRG-MY------A- 436 (465)
Confidence 5555555443 4433445567789998864 1100 000113367778885 599999876 32 1
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 413 VCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 413 is~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+++. .+++++++++++|++++++.+
T Consensus 437 ~s~~-~t~edid~~l~~l~~~l~~~~ 461 (465)
T 2yky_A 437 LSLE-IADAGRDAFAEALADFIGEQR 461 (465)
Confidence 6654 589999999999999987653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=187.28 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=127.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
..++++.+|++++ ....+++++|++.++..++.++++|||.|+++.|+|.++...+... |++++.++.+.
T Consensus 197 i~eaE~~lA~~fG---------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~ls-Ga~pv~v~~~~ 266 (715)
T 3n75_A 197 HKEAEQYIARVFN---------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMS-DVTPIYFRPTR 266 (715)
T ss_dssp HHHHHHHHHHHHT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHS-CCEEEEECCCB
T ss_pred HHHHHHHHHHHhC---------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHc-CCEEEEEeccc
Confidence 6789999999987 2356788899999999999999999999999999999999988875 99999998764
Q ss_pred CCCccc---------CHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-
Q 011570 176 SNDFKV---------TMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV- 245 (483)
Q Consensus 176 ~~~~~~---------d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~- 245 (483)
+ .|.+ |++.+++++++... .+.++++++++| ||+|.+++ +++|+++|+++ .+++||+|+...
T Consensus 267 ~-~~gi~~~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~--~livDEAH~~~~~ 338 (715)
T 3n75_A 267 N-AYGILGGIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK--SIHFDSAWVPYTN 338 (715)
T ss_dssp C-TTCCBCCCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS--EEEEECTTCTTGG
T ss_pred c-ccccccCcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCC---HHHHHHHhCcC--cEEEccccccccc
Confidence 3 4554 89999999976311 012348999999 99999999 66777777665 379999998653
Q ss_pred cCCCCCcchHHHhhhhccccCCCeE-EEEecCccccCCCCc-eEEEEEecCh
Q 011570 246 FTKESSFVSIAEIIDQDIACNRNLI-HIVYSLSKDMGFPGF-RVGIIYSYND 295 (483)
Q Consensus 246 ~~~~~~~~s~~~l~~~~~~~~~~~v-i~~~S~SK~~g~~Gl-RiG~li~~~~ 295 (483)
|.. .+.....+... ...+.+ +++.|+||+++ |+ ..|+++++++
T Consensus 339 f~~--~~~~~~al~~g---~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~ 383 (715)
T 3n75_A 339 FSP--IYEGKCGMSGG---RVEGKVIYETQSTHKLLA--AFSQASMIHVKGD 383 (715)
T ss_dssp GSG--GGTTSSTTSSS---CCTTCEEEEEECHHHHSS--CCTTCEEEEEESC
T ss_pred cCC--ccccccccccC---cCCCEEEEEEeccccccc--CCCCeeEEEeCch
Confidence 332 11111111100 012443 66899999974 44 3578888554
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-17 Score=161.31 Aligned_cols=289 Identities=13% Similarity=0.128 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCC-CcEEE-eCChhHHHHHHHHHhcCC--CCeEEEeCCCCcCh--HHHHhhhcCcEEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDP-DRIVM-SGGATGAHETVAFCLADP--GDAFLVPTPYYPGF--DRDLRWRTGVQLV 169 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~i-t~G~~~al~~~~~~l~~~--gd~Vlv~~P~y~~~--~~~~~~~~G~~~~ 169 (483)
+.+.|+.++++++ +++ ++|++ |.|+|+++++++..++.+ ||+|++..-++.+. ...++.. |..++
T Consensus 60 ~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~-G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLA--------VPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKF-GTINI 130 (377)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTT-SEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHh-CCceE
Confidence 3566777777776 333 57888 579999999999998865 89988776654332 2233443 87777
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++ ++..+++.++.++. +++++|.+++-.|.||.+.+. +|+++|+++++|.+.+ +..
T Consensus 131 ~~~~~~--~~~~~~~~~~~~i~------~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~q~---~g~- 190 (377)
T 3e77_A 131 VHPKLG--SYTKIPDPSTWNLN------PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMSSN---FLS- 190 (377)
T ss_dssp CSCCCS--SSCSCCCGGGCCCC------TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECTTT---TTS-
T ss_pred EeccCC--CcCCCCChHHhccC------CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcccc---cCC-
Confidence 777654 33456666654443 478999999888999999994 3678899999999987 333
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH----------H---HHHHHhhhcCCCChHHHH
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV----------V---SCARKMSSFGLVSSQTQH 316 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l----------~---~~~~~~~~~~~~s~~~q~ 316 (483)
.+ .++.. .+ ++..|..|.+|.+| +|+++..++.+ . ...+....+++.+.....
T Consensus 191 ~~-id~~~---------~~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~ 256 (377)
T 3e77_A 191 KP-VDVSK---------FG--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIY 256 (377)
T ss_dssp SC-CCGGG---------CS--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHH
T ss_pred CC-Cchhh---------cC--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHH
Confidence 22 33222 23 35678899999888 67777744321 0 001111123444544444
Q ss_pred HHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcC-Cceeec----CCceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQV-GIGCLK----SNAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~-gi~~~~----~~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
++.++++ ++.+. ++...++.++..+++.+.|.++ |+.+.+ ..++..+.+.++.......+ +..+...+
T Consensus 257 ~l~~al~---~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~--~~~~l~~l 331 (377)
T 3e77_A 257 VMGLVLE---WIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL--EKRFLDKA 331 (377)
T ss_dssp HHHHHHH---HHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTCCHHH--HHHHHHHH
T ss_pred HHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCCchhH--HHHHHHHH
Confidence 5544443 22222 5666777788889999999987 776432 12334566666642110111 12455555
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
. ++||.+++|... .+.+|+|+.. .++++++.+++.|++++++.
T Consensus 332 ~-~~Gi~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 375 (377)
T 3e77_A 332 L-ELNMLSLKGHRS----VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH 375 (377)
T ss_dssp H-HTTEESCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred H-HCCcEEeCCCCc----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence 5 569999988632 3569999976 59999999999999988764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=160.15 Aligned_cols=287 Identities=10% Similarity=0.052 Sum_probs=184.6
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcC-CCcEEE-eCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFD-PDRIVM-SGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~ 170 (483)
-+.+.|+.++++++ ++ +++|++ |.|+|+++++++..++.+||+|++..-++.+ +...++.. | ++..
T Consensus 73 ~~~~ar~~la~ll~--------~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~~~~~a~~~-G-~v~~ 142 (386)
T 3qm2_A 73 VAEEAEQDFRDLLN--------IPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAASAIKEAKKY-C-APQI 142 (386)
T ss_dssp CCHHHHHHHHHHHT--------CCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTT-S-EEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHHh-C-CeEE
Confidence 46889999999987 33 357888 6999999999999999999998765544332 22233443 8 8888
Q ss_pred eecC-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCC
Q 011570 171 VVCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTK 248 (483)
Q Consensus 171 v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~ 248 (483)
++.+ .+.++.++++.++.++. +++++|.+++-.|.||.+ .+ +++|. +|+++++|-+.+ ++.
T Consensus 143 v~~~~~~~G~~~~~~~~~~~l~------~~t~lV~~~h~et~tG~~i~p---i~~i~-----~g~~~~vDa~qs---~g~ 205 (386)
T 3qm2_A 143 IDAKITVDGKRAVKPMREWQLS------DNAAYLHYCPNETIDGIAIDE---TPDFG-----PEVVVTADFSST---ILS 205 (386)
T ss_dssp EECEEEETTEEEECCGGGCCCC------TTCSCEEECSEETTTTEECCC---CCCCC-----TTCCEEEECTTT---TTS
T ss_pred EecCcccCCCCCCchHHHhhcC------CCCcEEEEECCcCCcCEecCc---hhhhc-----CCCEEEEEcccc---cCC
Confidence 8876 11233367777766654 378999999888999996 66 44442 799999999986 332
Q ss_pred CCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHH-------------HHHHHhhhcCCCChHHH
Q 011570 249 ESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV-------------SCARKMSSFGLVSSQTQ 315 (483)
Q Consensus 249 ~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~-------------~~~~~~~~~~~~s~~~q 315 (483)
.+ .++.. .+ +.+.|..|.+|.+| +|+++..++.+. ........+++.+.+..
T Consensus 206 -~p-idv~~---------~~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i 270 (386)
T 3qm2_A 206 -AP-LDVSR---------YG--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAW 270 (386)
T ss_dssp -SC-CCGGG---------CS--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHH
T ss_pred -CC-CCccc---------cC--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHH
Confidence 22 33322 23 34578999999777 788888543210 01111111233343444
Q ss_pred HHHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCCc-eee-cC--CceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 316 HLIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVGI-GCL-KS--NAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 316 ~~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~gi-~~~-~~--~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
.++.++++ ++.+. ++...++.++.++++.+.|.++|+ ... .+ .....+.+.++.. ... ..+...
T Consensus 271 ~~l~~Al~---~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~----~~~--~~~~~~- 340 (386)
T 3qm2_A 271 YLSGLVFK---WLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADN----TLD--KVFLEE- 340 (386)
T ss_dssp HHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSG----GGH--HHHHHH-
T ss_pred HHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCc----ccc--HHHHHH-
Confidence 44444442 23332 566677788888999999988875 221 11 2223566666631 111 245555
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++||.+++|... .+.+|+|+.. .++++++.+++.|+++.++.
T Consensus 341 L~~~gI~~~~g~~~----~~~iRiS~~~~~t~edId~l~~~l~~~~~~~ 385 (386)
T 3qm2_A 341 SFAAGLHALKGHRV----VGGMRASIYNAMPIEGVKALTDFMIDFERRH 385 (386)
T ss_dssp HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEeCCCCC----cCeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45679999888643 2349999976 58999999999999987663
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=150.55 Aligned_cols=282 Identities=12% Similarity=0.155 Sum_probs=180.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEE-eCChhHHHHHHHHHhcCCCCeEEEeCC-CCcC-hHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVM-SGGATGAHETVAFCLADPGDAFLVPTP-YYPG-FDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~i-t~G~~~al~~~~~~l~~~gd~Vlv~~P-~y~~-~~~~~~~~~G~~~~~v 171 (483)
+.+.|+.++++++ ++ +++|++ |+|+|+++++++..++ +||++++..- .|.. +...++.. |+++..+
T Consensus 52 ~~~~r~~la~ll~--------~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~-G~~v~~~ 121 (361)
T 3m5u_A 52 HFGAQEKAKKLYE--------LNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQIL-GVNVKTV 121 (361)
T ss_dssp HHHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHT-TCCEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHc-CCceEEE
Confidence 4566777787776 33 457887 9999999999999988 8886633222 2221 22334444 8999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+.++.+.+.++++. + |+ +++++|.+++..|.||.+.+. +++ +|+++++|.+.+ +.. .+
T Consensus 122 ~~~~~g~~~~~~~~-~--l~------~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~q~---~g~-~~ 179 (361)
T 3m5u_A 122 ASSEESNFDHIPRV-E--FS------DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDASSD---FFS-RK 179 (361)
T ss_dssp EECTTTTSCSCCCC-C--CC------TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECGGG---TTS-SC
T ss_pred ecccCcCCCcCChh-h--cC------CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcccc---cCC-CC
Confidence 98875544345554 3 43 378999999888999998772 233 499999999986 332 22
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH---------------hhhcCCCChHHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK---------------MSSFGLVSSQTQH 316 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~---------------~~~~~~~s~~~q~ 316 (483)
.++. +-.+++.|..|.+|.+| +|+++..++ +.+.+.. ...+++.+.....
T Consensus 180 -id~~-----------~~d~~~~s~~K~~gp~G--~g~l~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~ 244 (361)
T 3m5u_A 180 -VDFS-----------NIALFYGGVQKNAGISG--LSCIFIRKD-MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY 244 (361)
T ss_dssp -CCCT-----------TEEEEEEETTTTSSCTT--CEEEEEEHH-HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred -CCcc-----------cCCEEEEechhccCCCc--cEEEEEcHH-HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHH
Confidence 2211 12366789999999778 788888543 3322211 1112334444444
Q ss_pred HHHHhcCChhHHHHH--HHHHHHHHHHHHHHHHHhhhcCC-c-eeec-C--CceEEEeeecCchhhccChHHHHHHHHHH
Q 011570 317 LIATMLSDDQFVEKF--IAESAKRIAERHKAFTWGLSQVG-I-GCLK-S--NAGLFLWMDLHHLLKEQTYEAEMALWRVI 389 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-i-~~~~-~--~~g~f~~~~l~~~~~~~~~~~~~~~~~~L 389 (483)
++.++++ ++.+. ++...++.++..+++.+.|.+++ + .... + .....+.+.++.. .... .++...
T Consensus 245 ~l~~al~---~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~--~~~~~~- 315 (361)
T 3m5u_A 245 MFNLEMD---WLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE--PLFVKE- 315 (361)
T ss_dssp HHHHHHH---HHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH--HHHHHH-
T ss_pred HHHHHHH---HHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh--HHHHHH-
Confidence 4444432 22222 45666777888889999998885 5 4432 1 1223555666631 0111 245544
Q ss_pred HHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 390 INEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 390 l~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++||.+++|... .+.+|+|+.. .++++++.+++.|+++.++.
T Consensus 316 L~~~gI~~~~g~~~----~g~iRiS~~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 316 AEEAGMIGLKGHRI----LGGIRASIYNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp HHHTTEECCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEecCCCc----cCeEEEEccCCCCHHHHHHHHHHHHHHHHhc
Confidence 45679999888642 2459999976 59999999999999988764
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-14 Score=141.65 Aligned_cols=319 Identities=15% Similarity=0.152 Sum_probs=190.6
Q ss_pred HHHHHHH-HHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC----CCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 98 EFRNAVA-KFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP----GDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 98 ~Lr~~ia-~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~----gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
.|.+.++ +|+.. .| ++ +....++++|+|.++..++.+.+++ ||.|+++..+|.+...++... |++++.++
T Consensus 116 ~ltn~l~ld~L~~-~G--~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~-Gl~Pv~V~ 190 (501)
T 3hl2_A 116 KITNSLVLDIIKL-AG--VH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA-GFEPVVIE 190 (501)
T ss_dssp HHHHHHHHHHHHH-TT--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHH-cC--CC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc-CCeEEEEe
Confidence 4444444 44543 35 32 3456999999997777777676664 499999999999999998886 99999887
Q ss_pred cC-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeC-CCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCc-cCCC
Q 011570 173 CD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITN-PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATV-FTKE 249 (483)
Q Consensus 173 ~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~-P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~-~~~~ 249 (483)
.. ++..+.+|++.++++|+++ +.+..++++++ |.|-.|.+-+ +++|+++|++||+++++|+||+... +..
T Consensus 191 p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~gIpllVDeAhGah~~~~~- 263 (501)
T 3hl2_A 191 NVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDR---LEELAVICANYDIPHIVNNAYGVQSSKCM- 263 (501)
T ss_dssp EEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTCTTCHHHH-
T ss_pred eeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCccccc---HHHHHHHHHHcCCeEEEeCcchhhhhhhh-
Confidence 62 1225789999999999875 22334444444 4554445555 9999999999999999999997542 111
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHH
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
.-+.+..++ . .-.+++.|..|.+-++ +..|.+...++.+.+.+....+-...++++....+.++.-+ .
T Consensus 264 ~lp~sA~~~-------G-rAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~S~Spsldl~~tLL~lG---r 331 (501)
T 3hl2_A 264 HLIQQGARV-------G-RIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLG---S 331 (501)
T ss_dssp HHHHHHHHH-------S-CCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCBCSHHHHHHHHHHHHHH---H
T ss_pred hhHHHHHhc-------C-CCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---H
Confidence 000112222 1 1345778999997433 33345556566555554332221223444443444443321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC----Cceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe---E-eeCC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV----GIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL---N-VSPG 400 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV---~-v~pg 400 (483)
+.+++..++..+..+++.+.|+++ |-++.. +.....+-+.+....... ...-..+-..|..+ +| . |.+|
T Consensus 332 ~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~-~~~~t~~gs~Lf~r-~vsG~Rvv~~~ 409 (501)
T 3hl2_A 332 NGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHR-DKAVTQLGSMLFTR-QVSGARVVPLG 409 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTT-SCHHHHHHHHHHHT-TCCSCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccccc-cccHHHHHHHHHhc-CCCcceeecCC
Confidence 223444445555556666666553 545543 334455666665431111 11222445555543 44 3 4556
Q ss_pred C----------CCCCCC----CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhccC
Q 011570 401 S----------SFHCPN----PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAKV 442 (483)
Q Consensus 401 ~----------~f~~~~----~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~~ 442 (483)
. .|+.-. ..|+=++.+- +++++++.++++|.+.+.+.+++.-
T Consensus 410 ~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~ 466 (501)
T 3hl2_A 410 SMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERS 466 (501)
T ss_dssp CCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred CceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5 454321 2366666543 6999999999999999998876543
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-14 Score=140.05 Aligned_cols=305 Identities=14% Similarity=0.130 Sum_probs=185.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCC----cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH-----hhh--c
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPD----RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL-----RWR--T 164 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~----~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~-----~~~--~ 164 (483)
..++.....+...+.+| ++.. ||-..+|+ +|+..++.+|++|||+|+..+..++++...- ... .
T Consensus 98 vD~iE~la~~rak~lF~----a~~A~w~VNVQP~SGs-~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~s 172 (490)
T 3ou5_A 98 VDEIELLCQRRALEAFD----LDPAQWGVNVQPYSGS-PANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 172 (490)
T ss_dssp HHHHHHHHHHHHHHHTT----CCTTTEEEECCCSSHH-HHHHHHHHHHCC-CCCEECBC---------------------
T ss_pred HHHHHHHHHHHHHHHhC----CCccccCCCCCcCCHH-HHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccc
Confidence 34555555566667776 4544 56666654 6777888999999999999988776654321 110 1
Q ss_pred C--cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccc
Q 011570 165 G--VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYA 242 (483)
Q Consensus 165 G--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~ 242 (483)
| .+.++++++.+ +..+|.+.+++..+++ ++|+|+..--.+|- .++ .+++.++|.+.|.++++|-+|.
T Consensus 173 g~~~~~~~Y~vd~~-t~~IDyd~~~~~A~~~-----kPklIi~G~SaY~r--~id---~~~~reIAd~vGA~Lm~DmAHi 241 (490)
T 3ou5_A 173 SIFFESMPYKLNPK-TGLIDYNQLALTARLF-----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHI 241 (490)
T ss_dssp -------CBCEETT-TTEECHHHHHHHHHHH-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred cccccccccccCCC-CCcccHHHHHHHHhhc-----CCCeEEECCccCcc--ccC---HHHHHHHHhhcccEEEechhhh
Confidence 2 24555666543 4679999999998875 88987766444442 345 6677777778999999999995
Q ss_pred cCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecCh--------------HHHHHHHHhhhcC
Q 011570 243 ATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYND--------------QVVSCARKMSSFG 308 (483)
Q Consensus 243 ~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~--------------~l~~~~~~~~~~~ 308 (483)
...... ..+++.... ..|+..|.+|++ +|-|-|.|++.++ ++.+.+.....++
T Consensus 242 aGLVA~-g~~psP~~~----------ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg 308 (490)
T 3ou5_A 242 SGLVAA-KVIPSPFKH----------ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPS 308 (490)
T ss_dssp HHHHHT-TSSCCGGGT----------CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTT
T ss_pred hhhhcc-cccCCcccc----------ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCcc
Confidence 443333 333343322 236788999997 8999999998542 3455555443332
Q ss_pred CC-ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC-CceEEEeeecCch-hhccChHHHHHH
Q 011570 309 LV-SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHL-LKEQTYEAEMAL 385 (483)
Q Consensus 309 ~~-s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~-~~~~~~~~~~~~ 385 (483)
.. ++..-.+++.++.-.+.+....+...+++.++.+.|.+.|.+.|+++... ..+-.+++++... +. ...
T Consensus 309 ~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGgTdnHlvLvDl~~~g~t-------G~~ 381 (490)
T 3ou5_A 309 LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD-------GAR 381 (490)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCC-------HHH
T ss_pred ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCceEEEEeccccCCC-------HHH
Confidence 22 22222222222211111222345566777889999999999999988742 2234667888542 12 144
Q ss_pred HHHHHHhcCeEee----CCCCCCCCCCCEEEEEecc-----CCHHHHHHHHHHHHHHHHHh
Q 011570 386 WRVIINEVKLNVS----PGSSFHCPNPGWFRVCFAN-----MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 386 ~~~Ll~~~gV~v~----pg~~f~~~~~~~iRis~~~-----~~~e~l~~~l~~L~~~l~~~ 437 (483)
++.+|++.||.+. |+.. .+-.++.|||+... ..++++++..+-|.+++...
T Consensus 382 ae~~Le~agItvNkN~iP~D~-sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~~ 441 (490)
T 3ou5_A 382 AERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp HHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcEECCCCCCCCC-CCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence 6677889999885 4431 11124569999843 47789999999998888643
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=145.34 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=173.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhh-----cCcEE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWR-----TGVQL 168 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~-----~G~~~ 168 (483)
..+|.+.|++.+. ..+.|++++++++++..++.... ...++|+...-+|.+........ .....
T Consensus 129 ~~~lae~l~~~~p---------~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~ 199 (454)
T 4ao9_A 129 EGRLARLICERFP---------QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDF 199 (454)
T ss_dssp HHHHHHHHHHHST---------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEE
T ss_pred HHHHHHHHHHhCC---------CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCc
Confidence 3556565655542 46899999999999999887653 12367888888887643221110 01233
Q ss_pred EEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 169 VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 169 ~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
..+|. -|++.+++.+++. +.++.+|++.......|.+. +.+.+++|.++|++||+++|.||+..+ ..
T Consensus 200 ~~~p~-------nd~~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~ 267 (454)
T 4ao9_A 200 LVLPY-------NDAQTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RL 267 (454)
T ss_dssp EEECT-------TCHHHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GG
T ss_pred ccCCC-------chHHHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CC
Confidence 33332 2788999888763 33566666543355567654 677899999999999999999999964 33
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh-hhc-----CCCChHHHHHHHHh
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM-SSF-----GLVSSQTQHLIATM 321 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~-~~~-----~~~s~~~q~~~~~~ 321 (483)
+ .. .. ..... . .+| ++ +++|.+| .|+.+|.+++ .+++.+.+... ..+ +..++++.+++.+.
T Consensus 268 G-~~-~a-~e~~g-v---~PD--i~--t~gK~lg-gG~Piga~~~-~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~ 334 (454)
T 4ao9_A 268 A-PH-GL-ANKLG-I---RSD--LT--TLGKYIG-GGMSFGAFGG-RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAG 334 (454)
T ss_dssp S-TT-CH-HHHHT-C---CCS--EE--EEEGGGG-TTSSCEEEEE-CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHH
T ss_pred c-cc-cc-hhccC-C---CCc--EE--EeccccC-CCCcceeeee-HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHH
Confidence 3 22 12 22211 0 223 22 7899998 8999999998 56666654321 111 22456666555444
Q ss_pred ---cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch-----hh--ccChHHHHHHHHHHHH
Q 011570 322 ---LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL-----LK--EQTYEAEMALWRVIIN 391 (483)
Q Consensus 322 ---l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~-----~~--~~~~~~~~~~~~~Ll~ 391 (483)
+.+++. .+.+.++-++++++ |.+.+.+.++......-|.++.+.+... .. .........++..+++
T Consensus 335 L~~l~~~~~-~~~~~~~g~~l~~~---L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 335 LTKLFTPEA-AGALAERGEALRAR---LNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHTSCHHH-HHHHHHHHHHHHHH---HHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHhccCh-hHHHHHHHHHHHHH---HHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH
Confidence 344432 22233333333322 2222233344333223344555555321 00 0111122356667775
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhhh
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
+||++.|. +++.++.. +|++++++++++|++++.+...
T Consensus 411 -~Gv~~~p~--------~~~~~s~~-~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 411 -EDIYSSPR--------GFVVLSLP-LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp -TTEECCTT--------CEEECCTT-CCHHHHHHHHHHHHHHHHHSGG
T ss_pred -CCEEEcCC--------CCEEEeCC-CCHHHHHHHHHHHHHHHHhccc
Confidence 59998764 23555554 6999999999999999987653
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=132.72 Aligned_cols=300 Identities=13% Similarity=0.075 Sum_probs=170.1
Q ss_pred CCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC-------------cEEEEeecCC----CCCc
Q 011570 119 PDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG-------------VQLVPVVCDS----SNDF 179 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G-------------~~~~~v~~~~----~~~~ 179 (483)
.+.+++++++++|+..++.... .....|+....+|.+.........+ ..+..+|... ....
T Consensus 125 ~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~ 204 (456)
T 4atq_A 125 AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPE 204 (456)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTT
T ss_pred CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCc
Confidence 4579999999999999986531 2346889999888775432221111 1234444321 1111
Q ss_pred ccCHHHHHHHHHHHHh--cCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHH
Q 011570 180 KVTMEALEAAYEKAQE--SNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIA 256 (483)
Q Consensus 180 ~~d~~~l~~~i~~~~~--~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~ 256 (483)
..+.+.++..+..... .+.++.+|++..-..-.|.+ .+.+.+++|.++|++||+++|.||+..++.-.+ .+....
T Consensus 205 ~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG--~~~a~e 282 (456)
T 4atq_A 205 ITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG--EWFAVD 282 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSSGGG
T ss_pred ccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCcc--cccccc
Confidence 1234445444443222 12356666655435555654 567789999999999999999999998753333 223322
Q ss_pred HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCC---hhHHHHH
Q 011570 257 EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSD---DQFVEKF 331 (483)
Q Consensus 257 ~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~~~~~~ 331 (483)
.+.- .+| |+ +++|.+| .|+.+|.+++ .+++.+.+.... ..+..++++.+++.+.|+- ++. .+.
T Consensus 283 ~~gv-----~PD--iv--t~gK~lg-gg~P~~av~~-~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~~~~l-~~~ 350 (456)
T 4atq_A 283 HEGV-----VPD--II--TMAKGIA-GGLPLSAITG-RADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDL-NGR 350 (456)
T ss_dssp GTTC-----CCS--EE--EECGGGG-TTSSCEEEEE-EHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHHTTH-HHH
T ss_pred ccCC-----CCc--hh--hhhhccc-CcCCceeeEe-cHHHHhcccccCCCCCCCCChHHHHhhHHHHHHHhhccH-HHH
Confidence 2211 223 33 6789998 9999999998 455554432211 1133567776666655532 221 222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceee--cCCceEEEeeecCchhh-ccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCL--KSNAGLFLWMDLHHLLK-EQTYEAEMALWRVIINEVKLNVSPGSSFHCPNP 408 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~--~~~~g~f~~~~l~~~~~-~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~ 408 (483)
.++.-+.+.++.+.+.+.+...+.++. ...-|+++-+++..... .........+...+++ +||++.++.. ..
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~----~~ 425 (456)
T 4atq_A 351 ARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGT----YG 425 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECT----TS
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCC----CC
Confidence 333333333333333332221111111 12235677777743211 1111223356777775 5999886532 23
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 409 GWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 409 ~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.|||.... ++++++++++++|.++++..
T Consensus 426 ~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 426 NVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 579999876 59999999999999998753
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-12 Score=127.54 Aligned_cols=309 Identities=14% Similarity=0.162 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCC-CeEEEeCCCCcChHHHHhhhcCc--
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPG-DAFLVPTPYYPGFDRDLRWRTGV-- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~g-d~Vlv~~P~y~~~~~~~~~~~G~-- 166 (483)
.+....+|+.+.+..+ .+.+.|++++++++|+..++.... .++ .+|+....+|.+.........|.
T Consensus 110 ~~~~~~lAe~L~~~~p----~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~ 185 (473)
T 4e3q_A 110 SDQTVMLSEKLVEVSP----FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPY 185 (473)
T ss_dssp EHHHHHHHHHHHHHSS----CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGG
T ss_pred CHHHHHHHHHHHhhCC----CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccc
Confidence 3455566666665432 345789999999999999987642 233 57888888887643322211111
Q ss_pred ---------EEEEeecCC------CCCc-----ccCHHHHHHHHHHHHhcCC-ceeEEEEeCCCCCCcCC-CCHHHHHHH
Q 011570 167 ---------QLVPVVCDS------SNDF-----KVTMEALEAAYEKAQESNI-RIKGVLITNPSNPLGTF-LDRETLKDI 224 (483)
Q Consensus 167 ---------~~~~v~~~~------~~~~-----~~d~~~l~~~i~~~~~~~~-~~~~i~l~~P~NPtG~~-~~~~~l~~i 224 (483)
..+.++.+. .+.. ....+++++.+.. ++. ++.+|++.....-.|.+ .+.+.+++|
T Consensus 186 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~~~~~iAavi~EPiqg~gG~~~p~~~fl~~l 262 (473)
T 4e3q_A 186 NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQR---EGADTIAGFFAEPVMGAGGVIPPAKGYFQAI 262 (473)
T ss_dssp GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHH---HCGGGEEEEEECSSBSTTTSBCCCTTHHHHH
T ss_pred ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHh---hCCCceEEEEeCCccCCCCceeCCHHHHHHH
Confidence 122222211 0000 0012344555543 222 45444444335556765 466789999
Q ss_pred HHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHH
Q 011570 225 VSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 225 ~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~ 303 (483)
.++|++||+++|.||+..++...+ .+.....+.- .+| ++ +++|.++ .| +.+|.+++ .+++.+.+..
T Consensus 263 r~lc~~~gilLI~DEV~tGfGRtG--~~fa~e~~gv-----~PD--i~--t~~K~l~-gG~~Pl~av~~-~~~i~~~~~~ 329 (473)
T 4e3q_A 263 LPILRKYDIPVISDEVICGFGRTG--NTWGCVTYDF-----TPD--AI--ISSKNLT-AGFFPMGAVIL-GPELSKRLET 329 (473)
T ss_dssp HHHHHHTTCCEEEECTTTSSSTTS--SSCHHHHTTC-----CCS--EE--EECGGGG-TTSSCCEEEEE-CHHHHHHHHH
T ss_pred HHHhcccceEEeccCccccCCccc--chhHHHhcCC-----CCC--hH--Hhccccc-CCCCCcccccc-cHHHHHHhcc
Confidence 999999999999999998843333 2233322211 223 22 6789998 66 99999999 5666665533
Q ss_pred h----hhc-----CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhc---C-CceeecCCceEEEeeec
Q 011570 304 M----SSF-----GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQ---V-GIGCLKSNAGLFLWMDL 370 (483)
Q Consensus 304 ~----~~~-----~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~---~-gi~~~~~~~g~f~~~~l 370 (483)
. ..+ +..++++.+++.+.|+--. + +...++.++.-+++.+.|++ . .+.-.... |+++-+++
T Consensus 330 ~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~--~---~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~-Gl~~giel 403 (473)
T 4e3q_A 330 AIEAIEEFPHGFTASGHPVGCAIALKAIDVVM--N---EGLAENVRRLAPRFEERLKHIAERPNIGEYRGI-GFMWALEA 403 (473)
T ss_dssp HHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHH--H---SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE-TTEEEEEE
T ss_pred ccccccccccCCCCCCCcchhhhhhhhhhhhc--c---ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeec-ceEEEEEE
Confidence 1 111 2346666666555543211 0 11112223333334444433 2 33222223 45666766
Q ss_pred Cchhhc-----cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 371 HHLLKE-----QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 371 ~~~~~~-----~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
...... ........+...++ ++||+++|.. +.+||+... ++++++++++++|.+++++...
T Consensus 404 v~~~~~~~~~~~~~~~~~~~~~~~~-~~Gll~~~~g-------~~i~l~PPL~it~~eid~~~~~l~~al~~v~a 470 (473)
T 4e3q_A 404 VKDKASKTPFDGNLSVSERIANTCT-DLGLICRPLG-------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470 (473)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHH-HTTEECEEET-------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCccccccccccHHHHHHHHHHHH-HCCcEEEecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 322111 01112335666666 4599998642 469998765 5999999999999999987643
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-11 Score=120.11 Aligned_cols=320 Identities=15% Similarity=0.121 Sum_probs=180.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCC----CCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADP----GDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~----gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
...+.+.+..++-+..| ++ +....++++|+|.+...++.+.+++ ++.|+++..+|.++..++... |+..+.+
T Consensus 96 ~~~~e~~~~~~~~~~lG--lp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~-Gl~p~~v 171 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAG--VH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVI 171 (450)
T ss_dssp HHHHHHHHHHHHHHHHT--CT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHHhCC--CC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc-CCeeEEE
Confidence 44677788888877777 22 3345788999985555444444443 899999999999999999886 9998888
Q ss_pred ecC-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 172 VCD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 172 ~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
+.. .+..+.+|++.|+++|++... +.+++++++| .+.+|.+-+ +++|+++|++||+++++|+||+.. +..
T Consensus 172 ~~~~~~~~~~id~~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~-~~~- 243 (450)
T 3bc8_A 172 ENVLEGDELRTDLKAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQ-SSK- 243 (450)
T ss_dssp CCEEETTEEECCHHHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTT-CHH-
T ss_pred EeeecCccCCcCHHHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchh-hhh-
Confidence 652 123678999999999987521 2456666777 455677777 999999999999999999999753 111
Q ss_pred CCcchHH-HhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHH
Q 011570 250 SSFVSIA-EIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 250 ~~~~s~~-~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~ 328 (483)
...+. +... ...-..++.|.+|++. .-.-.|++...++...+...........++++......++..+
T Consensus 244 --~~~l~~~a~~-----~~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G--- 312 (450)
T 3bc8_A 244 --CMHLIQQGAR-----VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG--- 312 (450)
T ss_dssp --HHHHHHHHHH-----HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH---
T ss_pred --hHhHHHHHhc-----ccCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH---
Confidence 11111 1110 0122346679999975 4444677776555544443322111123455544443333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc----CCceeecCCc-eEEEeeecCchhhccChHHHHHHHHHHHHh--cCeEeeC--
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQ----VGIGCLKSNA-GLFLWMDLHHLLKEQTYEAEMALWRVIINE--VKLNVSP-- 399 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~~~~-g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~--~gV~v~p-- 399 (483)
.+.+.+..+...+..+++.+.+++ .|+.+..... +.-..+.++....... .+...+.-.+... .|..+.+
T Consensus 313 ~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~D~tkl~i~~~~~g~sG~~v~~~~ 391 (450)
T 3bc8_A 313 CSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLFTRQVSGARAVPLG 391 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHHHTTCCSCEEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeeccccccccc-CCCceeEEEecCCCCccceeeecc
Confidence 112233323333444444444433 3555543221 1111222332111111 1122333333322 1333321
Q ss_pred ------CC---CCCC----CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhh
Q 011570 400 ------GS---SFHC----PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVE 439 (483)
Q Consensus 400 ------g~---~f~~----~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~ 439 (483)
|. .|+. ....++=+.++. .++++++.++++|++++++.++
T Consensus 392 ~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 392 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 445 (450)
T ss_dssp CEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 11 1111 123455555543 5999999999999998776644
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9e-13 Score=143.95 Aligned_cols=231 Identities=10% Similarity=0.072 Sum_probs=132.4
Q ss_pred HHHHHHHHHHH--hcCCceeEEEEeCC-CCCCcCCC-CHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh
Q 011570 184 EALEAAYEKAQ--ESNIRIKGVLITNP-SNPLGTFL-DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII 259 (483)
Q Consensus 184 ~~l~~~i~~~~--~~~~~~~~i~l~~P-~NPtG~~~-~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~ 259 (483)
+.|++.|++.. ....++.+|++..- ++..|.++ +.+.+++|.++|++||+++|+||++.++...+ ..+ ....+.
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG-~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLG-VET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTS-BSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCC-Cch-hhHhcC
Confidence 45666554311 11235666665543 68888765 78889999999999999999999998854444 332 322221
Q ss_pred hhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-------h-hcCCCChHHHHHHHHhcC---ChhH
Q 011570 260 DQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-------S-SFGLVSSQTQHLIATMLS---DDQF 327 (483)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-------~-~~~~~s~~~q~~~~~~l~---~~~~ 327 (483)
- .++ + -++||.+| .| +++|++++ ++.+.+.+... . ..+..++++++++.+.|+ +++.
T Consensus 655 v-----~PD-i---itlsK~L~-gG~~Plgav~~-~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l 723 (831)
T 4a0g_A 655 C-----KPD-I---ACFAKLLT-GGMVPLAVTLA-TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET 723 (831)
T ss_dssp S-----CCS-E---EEECGGGG-TTSSCCEEEEE-CHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT
T ss_pred C-----CCc-E---EEEecccc-cCccCcEEEEE-CHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH
Confidence 1 223 2 27999998 67 89999999 56666654321 1 113356677766655543 2221
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhcC-CceeecCCceEEEeeecCchhhcc--ChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 328 VEKFIAESAKRIAER-HKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQ--TYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~-~~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~--~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
.+.+.+..+.+++. .+.+.+.+.+. .+...... |+++.+++....... .......+...+++ +||.++|+
T Consensus 724 -~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~--- 797 (831)
T 4a0g_A 724 -NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVI-GTLFALELKADASNSGYASLYAKSLLIMLRE-DGIFTRPL--- 797 (831)
T ss_dssp -CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEE-TTEEEEEEC---------CHHHHHHHHHHHH-TTEECCCB---
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeec-ccEEEEEEecCccccccchHHHHHHHHHHHH-CCcEEEec---
Confidence 11111111111110 11233444444 33333333 467777775321000 01123466777764 69999875
Q ss_pred CCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 404 HCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 404 ~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+.+||+... ++++++++++++|.+++++.
T Consensus 798 ----g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 ----GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ----TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2589999654 59999999999999988654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=82.99 E-value=8.2 Score=35.70 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=61.9
Q ss_pred CcEEEeCChhHHHH-HHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCC
Q 011570 120 DRIVMSGGATGAHE-TVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNI 198 (483)
Q Consensus 120 ~~i~it~G~~~al~-~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~ 198 (483)
.-++||.| +.+|- .+...|.+.|-.|++..-.-......++.. |.+...+..|- -|.+++++.+++..++-.
T Consensus 30 KvalVTGa-s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 30 KIAVITGA-TSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-GGGAVGIQADS-----ANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp CEEEEESC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CEEEEeCc-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCCeEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 34555554 44554 444678889988887765544445555665 77777777653 367777777766555434
Q ss_pred ceeEEEEeCC-CCCCcCC--CCHHHHHHHHHHH
Q 011570 199 RIKGVLITNP-SNPLGTF--LDRETLKDIVSFI 228 (483)
Q Consensus 199 ~~~~i~l~~P-~NPtG~~--~~~~~l~~i~~~a 228 (483)
++.. +++|. .++.+.+ ++.++++++.+.-
T Consensus 103 ~iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~vN 134 (273)
T 4fgs_A 103 RIDV-LFVNAGGGSMLPLGEVTEEQYDDTFDRN 134 (273)
T ss_dssp CEEE-EEECCCCCCCCCTTSCCHHHHHHHHHHH
T ss_pred CCCE-EEECCCCCCCCChhhccHHHHHHHHHHH
Confidence 6764 45554 3333332 4778888887753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 483 | ||||
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-111 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-108 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 3e-53 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 6e-53 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 8e-50 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 7e-35 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 4e-30 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 3e-27 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 5e-27 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 9e-26 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 1e-24 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-24 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 1e-23 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 9e-23 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 2e-22 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-21 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 3e-21 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 3e-20 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-16 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 2e-15 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 4e-14 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 1e-13 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 6e-13 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 1e-10 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 1e-05 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 1e-04 |
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 334 bits (857), Expect = e-111
Identities = 236/428 (55%), Positives = 320/428 (74%), Gaps = 5/428 (1%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
+LS+ A N HG+DS YF GW+ +E +PYH N NG+IQMGLAEN LC +L+E WL N
Sbjct: 1 MLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKN 60
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
P+A+ G + F +A+FQDYHGLP F+ A+ FM ++RGN++TFDP+ +V++ GAT
Sbjct: 61 PEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATS 120
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A+ET FCLADPG+A L+PTPYYPGFDRDL+WRTGV++VP+ C SSN F++T ALE AY
Sbjct: 121 ANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAY 180
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
++A++ N+R+KGVL+TNPSNPLGT + R L ++SF+ +K IHL+ DEIY+ T F+
Sbjct: 181 QEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP- 239
Query: 251 SFVSIAEIIDQ----DIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS 306
SF+S+ E++ + + +H+VYSLSKD+G PGFRVG IYS +D VV+ A KMSS
Sbjct: 240 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSS 299
Query: 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFL 366
FGLVSSQTQHL++ MLSD + + +IAE+ KR+ +R K GL + GI CL NAGLF
Sbjct: 300 FGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFC 359
Query: 367 WMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIA 426
W+D+ HLL+ T+EAEM LW+ I+ EV LN+SPGSS HC PGWFRVCFAN+ +RT+++A
Sbjct: 360 WVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLA 419
Query: 427 LSRITSFM 434
+ R+ +F+
Sbjct: 420 MQRLKAFV 427
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 326 bits (835), Expect = e-108
Identities = 291/425 (68%), Positives = 358/425 (84%), Gaps = 2/425 (0%)
Query: 11 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
+LSK+A HGE+SPYFDGWKA++SDP+HP KNPNGVIQMGLAEN LC +L+EDW+ N
Sbjct: 1 ILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRN 60
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG 130
PK SICS EG+ FK IA FQDYHGLPEFR A+AKFM K RG R+ FDP+R+VM+GGATG
Sbjct: 61 PKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATG 119
Query: 131 AHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAY 190
A+ET+ FCLADPGDAFLVP+PYYP F+RDLRWRTGVQL+P+ C+SSN+FK+T +A++ AY
Sbjct: 120 ANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAY 179
Query: 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250
E AQ+SNI++KG+++TNPSNPLGT LD++TLK ++SF N+ NIHLVCDEIYAATVF
Sbjct: 180 ENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQ 239
Query: 251 SFVSIAEIIDQDIA-CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL 309
+ +Q++ CN++L+HIVYSLSKDMG PGFRVGIIYS+ND VV+CARKMSSFGL
Sbjct: 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGL 299
Query: 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMD 369
VS+QTQ+ +A MLSD++FV+ F+ ESA R+ +RHK FT GL VGI CLK+NAGLF WMD
Sbjct: 300 VSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMD 359
Query: 370 LHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSR 429
L LL+E T+++EM+LWRVIIN+VKLNVSPGSSF C PGWFRVCFANMDD T++IAL+R
Sbjct: 360 LRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANMDDGTVDIALAR 419
Query: 430 ITSFM 434
I F+
Sbjct: 420 IRRFV 424
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 181 bits (461), Expect = 3e-53
Identities = 65/352 (18%), Positives = 138/352 (39%), Gaps = 27/352 (7%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
+G + G P R A+A+ + R N + + D I+++ G + + + +PGD
Sbjct: 58 QGKTRYGPAAGEPRLREAIAQKLQ--RDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGD 115
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
++P P++ + ++ G V + FKV+ E + A + K ++
Sbjct: 116 EVIIPAPFWVSYPEMVKLAEGT-PVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
PSNP G + ++ I E + ++ DEIY + ++ +SI
Sbjct: 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIY-EKILYDDAQHLSIGAASP---- 223
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLS 323
+ +K G+RVG + V + + S V + Q+
Sbjct: 224 EAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYE 283
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382
+ Q + E AER + L+ + G+ C K + +++ + T +
Sbjct: 284 NSQ---DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAK-----TGRSS 335
Query: 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+ ++++ ++ PG++F R+ +A D T++ + R+ F+
Sbjct: 336 LDFCSELLDQHQVATVPGAAFGA--DDCIRLSYATDLD-TIKRGMERLEKFL 384
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 181 bits (459), Expect = 6e-53
Identities = 68/350 (19%), Positives = 140/350 (40%), Gaps = 20/350 (5%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
KG+ + GL E R A+A+ + K + I++ GA A G+
Sbjct: 53 KGLTHYGPNIGLLELREAIAEKLKK-QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGE 111
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
L+PTP + + + G + V V ++F++ ++ L+ + + ++
Sbjct: 112 EVLIPTPAFVSYAPAVIL-AGGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 164
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
I +P NP G L ++ L++I F+ E ++ ++ DE+Y ++ SIA +
Sbjct: 165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA-RHYSIASLDG---- 219
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD 324
V SK G+R+G + + + + + A
Sbjct: 220 -MFERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK 278
Query: 325 DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMA 384
D+ K + E K R K L+++G+ +K +++ + T
Sbjct: 279 DERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKGAFYIFPRIRD-----TGLTSKK 333
Query: 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+++ E ++ V PGS+F G+ R+ +A ++ +E A+ R+ +
Sbjct: 334 FSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEK-LEEAMDRMERVL 382
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 172 bits (437), Expect = 8e-50
Identities = 72/351 (20%), Positives = 141/351 (40%), Gaps = 28/351 (7%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
+G + G+PE R A+A+ + ++ P+ +++ G + A + + DPGD
Sbjct: 59 QGKTKYAPPAGIPELREALAEKFRREN--GLSVTPEETIVTVGGSQALFNLFQAILDPGD 116
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
+V +PY+ + +R+ GV +V V F E + A R K ++
Sbjct: 117 EVIVLSPYWVSYPEMVRFAGGV-VVEVETLPEEGFVPDPERVRRAITP------RTKALV 169
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
+ +P+NP G +E L+ + E + +LV DEIY ++ E S + +
Sbjct: 170 VNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSPGRVAPEH-- 225
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-KMSSFGLVSSQTQHLIATMLS 323
V +K G+R+G + + + A S + Q L+
Sbjct: 226 -----TLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALT 280
Query: 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEM 383
+ + F+ + + R GL+ +G+ ++ + ++ MD + ++ AE
Sbjct: 281 NQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPSGAFYVLMDTSPIAPDEVRAAER 340
Query: 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
L E + V PG+ F G R+ +A ++ + AL R +
Sbjct: 341 LL------EAGVAVVPGTDFAA--FGHVRLSYATSEEN-LRKALERFARVL 382
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 132 bits (332), Expect = 7e-35
Identities = 77/357 (21%), Positives = 147/357 (41%), Gaps = 32/357 (8%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
+G + D GLPE R A+ + + N + PD + ++ T A + + L DPGD
Sbjct: 61 EGHNYYGDSEGLPELRKAIVEREKRK--NGVDITPDDVRVTAAVTEALQLIFGALLDPGD 118
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
LVP P YP + L G + V D++ ++ + ++ R K +
Sbjct: 119 EILVPGPSYPPY-TGLVKFYGGKPVEYRTIEEEDWQPDID------DIRKKITDRTKAIA 171
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
+ NP+NP G D++TL++I++ E I ++ DEIY + E +
Sbjct: 172 VINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGS-------LT 224
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYN-----DQVVSCARKMSSFGL-VSSQTQHLI 318
+ +I ++ LSK G+R+G +Y + +V +++ L ++ Q
Sbjct: 225 KDVPVI-VMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAA 283
Query: 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAGLFLWMDLHHLLKEQ 377
L+ ++ E K++ ER L+++ I K +++ + +
Sbjct: 284 IAGLTGPM---DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKI----EVG 336
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
++ + +++ + GS F G FR F + +E A+ R FM
Sbjct: 337 PWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEI-LEEAMDRFEKFM 392
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 119 bits (299), Expect = 4e-30
Identities = 63/460 (13%), Positives = 123/460 (26%), Gaps = 102/460 (22%)
Query: 19 NGHGE---DSPYFDGWKAFESD-----PYHPTKNPNGVIQMGLAENLLCHELVEDWLMNN 70
+ HG D +G E + P K + + L +E++ +
Sbjct: 21 SEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLF----LEEYWKQH 76
Query: 71 PKASICSAEGLNEFKGIAIFQDYHGL---PEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127
+AS + ++ F + E + + V GN IV G
Sbjct: 77 KEASAVLVSP---WHRMSYFFNPVSNFISFELEKTIKELHEVV-GNAAA-KDRYIVFGVG 131
Query: 128 ATGAHETVAFCLAD--------PGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDF 179
T + L+ P + P+YP F + +
Sbjct: 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVF---------REQTKYFDKKGYVW 182
Query: 180 KVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDE 239
SN ++T+P+NP G + C
Sbjct: 183 AGNAANYVNV------SNPEQYIEMVTSPNNPEGLL--------------RHAVIKGCKS 222
Query: 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS 299
IY + + I D+DI +++++SK G G R G ++ V +
Sbjct: 223 IYDMVYY--WPHYTPIKYKADEDI--------LLFTMSKFTGHSGSRFGWALIKDESVYN 272
Query: 300 CARKMSSFG--LVSSQTQHLIATMLSDDQF--------VEKFIAESAKRIAERHKAFTWG 349
+ +TQ +L + + K++ ER T
Sbjct: 273 NLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITAL 332
Query: 350 LSQVGIGCL---------------KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVK 394
L Q + + + W+ + Y+ +
Sbjct: 333 LDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQ--------TFQNGR 384
Query: 395 LNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+N G F + + R+ D + + + +
Sbjct: 385 INTQNGVGFEA-SSRYVRLSLIKTQD-DFDQLMYYLKDMV 422
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 110 bits (275), Expect = 3e-27
Identities = 77/350 (22%), Positives = 143/350 (40%), Gaps = 32/350 (9%)
Query: 85 KGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGD 144
KG + D G+ E R +AK +G+ I+ D + A L DPGD
Sbjct: 56 KGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGA--KQALFNAFMALLDPGD 113
Query: 145 AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204
+V +P + G + V S +F+ ++E +E + K VL
Sbjct: 114 EVIVFSPVWV-SYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG------KTKAVL 166
Query: 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIA 264
I +P+NP G RE L+ +V ++N +++ DE+Y + V+T E + + D++
Sbjct: 167 INSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSIL-------DVS 219
Query: 265 CNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD 324
+ I + SK G+RVG + S + ++ S + +
Sbjct: 220 EGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTT-----SCINTVAQYAA 274
Query: 325 DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMA 384
+ +E + + ER L ++G+ ++ +L+ + ++
Sbjct: 275 LKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRG--------DDVK 326
Query: 385 LWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
++ E K+ + PGS+F PG+ R+ FA +R + AL RI F+
Sbjct: 327 FCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIER-LTEALDRIEDFL 373
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 110 bits (275), Expect = 5e-27
Identities = 57/358 (15%), Positives = 104/358 (29%), Gaps = 50/358 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-------ADPGDAFL 147
GL EFR ++ + V S G TGA A L +
Sbjct: 75 GLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVY 134
Query: 148 VPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITN 207
V +P + + + + + ++ + E A E +I + L
Sbjct: 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFV---LHAC 191
Query: 208 PSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNR 267
NP GT E K I S + + + D Y +
Sbjct: 192 AHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDA----WAIRYFVSEG 247
Query: 268 NLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--------QHLIA 319
+ S SK+ G RVG + + S R +S + T ++A
Sbjct: 248 FELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVA 307
Query: 320 TMLSDDQFVEKF---IAESAKRIAERHKAFTWGLSQVGIGC----LKSNAGLFLWMDLHH 372
LSD + ++ + A RI L + + G+F + L
Sbjct: 308 RTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL-- 365
Query: 373 LLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ + +IN+ + + P R+ + + ++ + I
Sbjct: 366 -------NPKQVEY--LINQKHIYLLPSG----------RINMCGLTTKNLDYVATSI 404
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 9e-26
Identities = 56/364 (15%), Positives = 118/364 (32%), Gaps = 28/364 (7%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G P +A F G++ G I ++++ G GA T L D GD ++ P
Sbjct: 62 KTFGYPPLTKILASFFGELLGQEIDPL-RNVLVTVGGYGALFTAFQALVDEGDEVIIIEP 120
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI---KGVLITNP 208
++ ++ G + + + + + + K +++ P
Sbjct: 121 FFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVLNTP 180
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
+NPLG RE L+ + S + ++ + DE+Y V+ +SIA +
Sbjct: 181 NNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH-QHISIASLPG-----MWE 234
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSD---- 324
+ S K G++VG + + + + +
Sbjct: 235 RTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQL 294
Query: 325 -DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTY---- 379
+ + + + + L VG+ L FL D+ ++
Sbjct: 295 LFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGA 354
Query: 380 ---EAEMALWRVIINEVKLNVSPGSSFHCPN-----PGWFRVCFANMDDRTMEIALSRIT 431
+ + +I L P S F+ + R CF D+ T++ ++
Sbjct: 355 VDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLR 413
Query: 432 SFML 435
+ +
Sbjct: 414 KWKV 417
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 103 bits (256), Expect = 1e-24
Identities = 58/355 (16%), Positives = 123/355 (34%), Gaps = 28/355 (7%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G R A+A++M K I I+ G+ A + + +PGD +V P
Sbjct: 69 TTKGFTPLRLALARWMEKRYD--IPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAP 126
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
Y + ++ + + + D +E K + + V
Sbjct: 127 TYLAAIQAFKYYD-PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPA- 184
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G + + K ++ NE + +V D Y+ ++ E +
Sbjct: 185 -GVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEP--------TPPIKHFDDYGRV 235
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
I + PGFR+G + ++ + S L ++ IA ++ ++++
Sbjct: 236 IYLGTFSKILAPGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEH 295
Query: 332 IAESAKRIAERHKAFTWGLSQV---GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
I + + R A L + G+ K G+F+ + L + + ++ + R
Sbjct: 296 IPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLP-----EGIDTKLMMERA 350
Query: 389 IINEVKLNVSPGSSF--HCPNPGWFRVCFANMDDRTMEIALSRITSFM---LKNV 438
+ + PG +F H R+ F + + T+ + R+ + +K V
Sbjct: 351 V--AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKRV 403
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 102 bits (254), Expect = 3e-24
Identities = 54/353 (15%), Positives = 104/353 (29%), Gaps = 47/353 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPY 152
GL +R+A+A + + + + G +GA + A L P V P
Sbjct: 71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPT 130
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
+ G ++ V L A + +I + L NP
Sbjct: 131 WENHVAIFAG-AGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVL---LHPCCHNPT 186
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G L + ++ + + + D Y E +I I + +
Sbjct: 187 GADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA-----LV 241
Query: 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--------SFGLVSSQTQHLIATMLSD 324
S SK G RVG + + + R + ++ + ++A +L+D
Sbjct: 242 SNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND 301
Query: 325 DQFVEKFIAESA---KRIAERHKAFTWGLSQVGIG----CLKSNAGLFLWMDLHHLLKEQ 377
+ ++AE RI + LS L + G+F + L
Sbjct: 302 EALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGL------- 354
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
A + E + + R+C A ++ ++
Sbjct: 355 --SAAQVDR--LREEFGVYLIASG----------RMCVAGLNTANVQRVAKAF 393
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 100 bits (248), Expect = 1e-23
Identities = 63/353 (17%), Positives = 102/353 (28%), Gaps = 47/353 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAF--LVPTPY 152
G+PEF + + I R + G TGA A LA V P
Sbjct: 70 GIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPS 129
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
+P G+++ + + + +AL + +AQ + NP
Sbjct: 130 WPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINSLNEAQ---AGDVVLFHGCCHNPT 185
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G E + + EK + D Y E + + +
Sbjct: 186 GIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM-----HKELIV 240
Query: 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGL--------VSSQTQHLIATMLSD 324
S SK+ G RVG + R S + ++AT+LS+
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 325 DQF---VEKFIAESAKRIAERHKAFTWGLSQVGIGC----LKSNAGLFLWMDLHHLLKEQ 377
D E+ + + +RI + F L + G + G+F + L KEQ
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---KEQ 357
Query: 378 TYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ E + RV A M M I
Sbjct: 358 VLR--------LREEFGVYAVASG----------RVNVAGMTPDNMAPLCEAI 392
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 97.9 bits (242), Expect = 9e-23
Identities = 59/360 (16%), Positives = 123/360 (34%), Gaps = 25/360 (6%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G P A++K ++ I ++++ GA A D GD ++ P
Sbjct: 64 RGFGHPRLVQALSKLYSQLVDRTINPM-TEVLVTVGAYEALYATIQGHVDEGDEVIIIEP 122
Query: 152 YYPGFDRDLRWRTGVQL-VPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSN 210
++ ++ ++ G+ +P+ + + + + + E N + K ++I P N
Sbjct: 123 FFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHN 182
Query: 211 PLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLI 270
PLG +DR L+ + + + N+ V DE+Y VF +
Sbjct: 183 PLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICT------LPGMWERT 236
Query: 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-----KMSSFGLVSSQTQHLIATMLSDD 325
+ S K G+++G Y + + + + T L
Sbjct: 237 ITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRL 296
Query: 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL------LKEQTY 379
+ E + + + + L++VG+ G F+ D L +E
Sbjct: 297 KSPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDA 356
Query: 380 EAEMALWRVIINEVKLNVSPGSSFHCPNP-----GWFRVCFANMDDRTMEIALSRITSFM 434
+ + + V L P S+F+ + R CF D+ ++ A + +
Sbjct: 357 RKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDEN-LQKAAEILRKWK 415
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 96.6 bits (239), Expect = 2e-22
Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 47/357 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLAD--PGDAFLVPTPY 152
GLP + AK + + + + D V S TGA A + P + P
Sbjct: 74 GLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPT 133
Query: 153 YPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL 212
+ + G++ ++ + + A +KA E +I + L + NP
Sbjct: 134 WANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV---LHSCAHNPT 189
Query: 213 GTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272
G E IV I KN + D Y + + A + + + + +
Sbjct: 190 GLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATG-DLDKDAYAVRLGVEKLSTVSPVFV 248
Query: 273 VYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM------------SSFGLVSSQTQHLIAT 320
S +K+ G G RVG + + S + ++A
Sbjct: 249 CQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAK 308
Query: 321 MLSDDQFV---EKFIAESAKRIAERHKAFTWGLSQVGIG----CLKSNAGLFLWMDLHHL 373
+L + K + + RI + A L ++G + + G+F + L
Sbjct: 309 LLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-- 366
Query: 374 LKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ + + + R A ++ +E I
Sbjct: 367 -PQMVKR--------LEETHAVYLVASG----------RASIAGLNQGNVEYVAKAI 404
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 94.0 bits (232), Expect = 1e-21
Identities = 65/345 (18%), Positives = 118/345 (34%), Gaps = 37/345 (10%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
GLP R A+A+ +P+ +V++ GAT A + L PGD +V P
Sbjct: 59 PPAGLPALREALAEEF--------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
++ + D + + + F++ + ALE A R + +L+ P NP
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP------RTRALLLNTPMNP 164
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G L+ I ++ L+ DE+Y + + +
Sbjct: 165 TGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE---------RPRRLREFAPERTF 215
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
V S K + G+RVG I + + A + E F
Sbjct: 216 TVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGF 275
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
+ R GL +G+ FL +L + ++
Sbjct: 276 YEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFLMAELPGWDAFR-----------LVE 324
Query: 392 EVKLNVSPGSSFHCPNP--GWFRVCFANMDDRTMEIALSRITSFM 434
E ++ + P S+F+ +P FR F ++ + +AL R+ +
Sbjct: 325 EARVALIPASAFYLEDPPKDLFRFAFCKTEEE-LHLALERLGRVV 368
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 93.5 bits (231), Expect = 3e-21
Identities = 48/354 (13%), Positives = 88/354 (24%), Gaps = 47/354 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPGDAFLVPTP 151
GL +F A A+ V TG+ A L +P P
Sbjct: 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
+ + G+QL + K E + +L NP
Sbjct: 132 SWGNH-TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPE---KSIILLHACAHNP 187
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G +E K++ S + ++N+ D Y + +
Sbjct: 188 TGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQS 247
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM--------SSFGLVSSQTQHLIATMLS 323
+K+MG G R G R + + + +L+
Sbjct: 248 ----YAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN 303
Query: 324 DDQF---VEKFIAESAKRIAERHKAFTWGLSQVGIGC----LKSNAGLFLWMDLHHLLKE 376
+ + A RI L + G + G+F + L
Sbjct: 304 TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL------ 357
Query: 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
+ E + E + ++ R+ A + + I
Sbjct: 358 ---KPEQVER--LTKEFSIYMTKDG----------RISVAGVASSNVGYLAHAI 396
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 90.3 bits (222), Expect = 3e-20
Identities = 80/411 (19%), Positives = 153/411 (37%), Gaps = 29/411 (7%)
Query: 36 SDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHG 95
SD P+ +P +I++ + + L D + A I + + + + G
Sbjct: 20 SDNAKPSPSPKPIIKLSVGDPTL------DKNLLTSAAQIKKLKEAIDSQECNGYFPTVG 73
Query: 96 LPEFRNAVAKFMGKVRG----NRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
PE R AVA + + T D +V+ G + + D GD LVP P
Sbjct: 74 SPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQP 133
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
+P + G+ + C ND++ ++ + + + K +++TNPSNP
Sbjct: 134 GFP-HYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK------DDKTKLLIVTNPSNP 186
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G+ R+ ++DIV E + L DEIYA VF + +
Sbjct: 187 CGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFT---SVADFETTVPRV 243
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR-----KMSSFGLVSSQTQHLIATMLSDDQ 326
I+ +K++ PG+R+G + + + ++ +
Sbjct: 244 ILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNT 303
Query: 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
E AK + +G+ ++L + L K + + ++ +
Sbjct: 304 PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFF 362
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437
++ E + V PG+ FH PG+ R+ + E A+ RI +F ++
Sbjct: 363 EKLLEEENVQVLPGTIFHA--PGFTRLTTTRPVEVYRE-AVERIKAFCQRH 410
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 78.9 bits (193), Expect = 2e-16
Identities = 53/351 (15%), Positives = 105/351 (29%), Gaps = 46/351 (13%)
Query: 95 GLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYP 154
G PEF+ A+ + + G + + G +A+P V P +P
Sbjct: 70 GEPEFQKAMGELI-LGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWP 128
Query: 155 GFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT 214
+ + G+ + + V E ++A A+ +L NP G
Sbjct: 129 NHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAAK---KGDMVLLHGCCHNPTGA 184
Query: 215 FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274
L + +I S + + + D Y E + IA + I
Sbjct: 185 NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-----EDAAGTRLIASRIPEVLIAA 239
Query: 275 SLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQT--------QHLIATMLSDDQ 326
S SK+ G R G + + + + ++ QT +++T+L+ +
Sbjct: 240 SCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPE 299
Query: 327 F---VEKFIAESAKRIAERHKAFTWGLSQVGIGC----LKSNAGLFLWMDLHHLLKEQTY 379
+ + + L + + + G+F +
Sbjct: 300 LRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA--------- 350
Query: 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRI 430
E I E + + S R+ A ++D T+ I I
Sbjct: 351 TPEQVKR--IKEEFGIYMVGDS----------RINIAGLNDNTIPILARAI 389
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 56/346 (16%), Positives = 121/346 (34%), Gaps = 26/346 (7%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G+ E R A A + + + + P+ ++++ G + A +A+PGD LV P
Sbjct: 62 HSAGIWELREAFASYYKRRQR--VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
+Y ++ + + N R KG++++NP NP
Sbjct: 120 FYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNL--------ESFINERTKGIVLSNPCNP 171
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G ++ ++ +V + L+ DE+Y+ VF ++ + +
Sbjct: 172 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG---------EFASALSIESDKVV 222
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
++ S+SK G RVG + + N++++S A K++ ++ I ++ + F
Sbjct: 223 VIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGR-LAPPLLEQIGSVGLLNLDDSFF 281
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
K + ++ +L E+ A L ++
Sbjct: 282 DFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVEDAEEF--ARWMLTDFNMD 339
Query: 392 EVKLNVSPGSSFHC---PNPGWFRVCFANMDDRTMEIALSRITSFM 434
V+P F+ R+ D + A+ + +
Sbjct: 340 GETTMVAPLRGFYLTPGLGKKEIRIACVLEKDL-LSRAIDVLMEGL 384
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 71.7 bits (174), Expect = 4e-14
Identities = 60/357 (16%), Positives = 121/357 (33%), Gaps = 24/357 (6%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G P + + K + ++ G D D ++ + G+ A + + D ++ P
Sbjct: 78 TTEGDPVLKQQILKLLERMYGITG-LDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDP 136
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
Y G R +V + D D V L + + ++ V ++N NP
Sbjct: 137 AYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYV-VSNFHNP 195
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
G E K +V + ++ +V D+ Y A + E +D
Sbjct: 196 AGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--------TVDPIFKIGGPERV 247
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
++ + + PG R+G++ + + + S L S H +A + + +
Sbjct: 248 VLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQ 307
Query: 332 IAESAKRIAERHKAFTWGLSQV-----GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
+ + + + L + G+ +KS GLF+W+ L
Sbjct: 308 LKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAK-- 365
Query: 387 RVIINEVKLNVSPGSSFHCPN--PGWFRVCFANMDDRTMEIALSRITSFMLKNVEAK 441
K+ PG F + R+ F D + + R+ +L+ + K
Sbjct: 366 -----RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKEK 417
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 45/341 (13%), Positives = 96/341 (28%), Gaps = 24/341 (7%)
Query: 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTP 151
G+ R A+A+ ++ G D D + A ++
Sbjct: 61 PMTGVQALREAIAQKTERLYG--YQPDADSDITVTAGATEALYAAITALVRNGDEVICFD 118
Query: 152 YYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
+V + F+V + + R + V++ P NP
Sbjct: 119 PSYDSYAP-AIALSGGIVKRMALQPPHFRVDWQEFA------ALLSERTRLVILNTPHNP 171
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
T + + I I ++ DE+Y F+++ +A ++ A +
Sbjct: 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFG 231
Query: 272 IVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKF 331
G++VG + + + L + +
Sbjct: 232 KT------YHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALAD--MLRAEPEH 283
Query: 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391
++ L++ + L FL +D + ++ + +
Sbjct: 284 YLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVD----YSAVSTLDDVEFCQWLTQ 339
Query: 392 EVKLNVSPGSSFHCPNPG--WFRVCFANMDDRTMEIALSRI 430
E + P S F R+CFA + T+ A R+
Sbjct: 340 EHGVAAIPLSVFCADPFPHKLIRLCFAK-KESTLLAAAERL 379
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 67.9 bits (164), Expect = 6e-13
Identities = 52/348 (14%), Positives = 108/348 (31%), Gaps = 20/348 (5%)
Query: 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLV 148
+ E++ V K+M D I+ + G A PGD ++
Sbjct: 61 VLGYTGPTEEYKKTVKKWMKDRHQWD--IQTDWIINTAGVVPAVFNAVREFTKPGDGVII 118
Query: 149 PTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP 208
TP Y F ++ + + + + + + + LE + + K +L +P
Sbjct: 119 ITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-----DKNNKALLFCSP 173
Query: 209 SNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRN 268
NP+G ++ L+ I + + ++ L DEI+ + + +
Sbjct: 174 HNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT-----VFQSIDEQLAD 228
Query: 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328
+ SK G + I N + K T +
Sbjct: 229 KTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC 288
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVG--IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALW 386
K++ K I + + I W+D L + A+
Sbjct: 289 GKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALKMD-----HKAME 343
Query: 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
+I++ ++ G F G+ R+ A ++ +L R+ +
Sbjct: 344 EFMIHKAQIFFDEGYIFGDGGIGFERINLAAPSS-VIQESLERLNKAL 390
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 34/341 (9%), Positives = 78/341 (22%), Gaps = 24/341 (7%)
Query: 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF 156
EF A+A + D +V V+ + + + P +
Sbjct: 38 DEFLAAIAHWFSTQHY--TAIDSQTVVYGPSVIYM---VSELIRQWSETGEGVVIHTPAY 92
Query: 157 DRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFL 216
D + G Q + + + +I +
Sbjct: 93 DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTC 152
Query: 217 DRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276
D + + + + + + R ++ S
Sbjct: 153 DELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPW----------SNVARGDWALLTSG 202
Query: 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSS---QTQHLIATMLSDDQFVEKFIA 333
SK P N S
Sbjct: 203 SKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDAL 262
Query: 334 ESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEV 393
+ + A + + + W+DL L + AL + +I +
Sbjct: 263 RIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-----NIDDNALQKALIEQE 317
Query: 394 KLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434
K+ + PG ++ G+ R+ +E ++ + + +
Sbjct: 318 KVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAI 357
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (105), Expect = 1e-05
Identities = 51/354 (14%), Positives = 96/354 (27%), Gaps = 49/354 (13%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVA----FCLADPGDAFLVPTPYY 153
RN +A +G DP IV + GAT + G + +
Sbjct: 52 IARNQIADLVGA--------DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEH 103
Query: 154 PGFDRDLRW--RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNP 211
R R G ++ + + + ++ LEAA V I + +N
Sbjct: 104 KAVLDTCRQLEREGFEVTYLAPQRNGI--IDLKELEAAMRD------DTILVSIMHVNNE 155
Query: 212 LGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIH 271
+G D I + I D + ID +
Sbjct: 156 IGVVQDIA---AIGEMCRARGIIYHVDATQSVGKLP-----------IDL---SQLKVDL 198
Query: 272 IVYSLSKDMGFPGFRVGII---YSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFV 328
+ +S K G G + + + H I M +
Sbjct: 199 MSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIA 258
Query: 329 EKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRV 388
++ +A +R+ G+ + L + L+ E+ + +
Sbjct: 259 KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD 318
Query: 389 IINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNVEAKV 442
+ VS GS+ + V A + + + R S E ++
Sbjct: 319 LA------VSSGSACTSASLEPSYVLRALGLNDELAHSSIRF-SLGRFTTEEEI 365
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 39/336 (11%), Positives = 103/336 (30%), Gaps = 43/336 (12%)
Query: 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFD 157
A++ G P+++++S GA E + +PG ++ P G
Sbjct: 60 AVIENYAQYAG--------VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMY 111
Query: 158 RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLD 217
GV+ V + + + +K V + +P+NP G ++
Sbjct: 112 SVSAETIGVECRTVPTLDNWQLDLQG---------ISDKLDGVKVVYVCSPNNPTGQLIN 162
Query: 218 RETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277
+ + ++ K I + + + ++ + I+ +LS
Sbjct: 163 PQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWL-----------AEYPHLAILRTLS 211
Query: 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAK 337
K G R G + + + + ++ + L + + Q + A+
Sbjct: 212 KAFALAGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALS--PQGIVAMRERVAQ 269
Query: 338 RIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNV 397
IAER + + + ++ +A A+++ + ++ +
Sbjct: 270 IIAEREYLIAALKEIPCVEQVFDSETNYILARF---------KASSAVFKSLWDQGIILR 320
Query: 398 SPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433
R+ ++ + + + +
Sbjct: 321 DQNKQPSLSG--CLRITVGTREE--SQRVIDALRAE 352
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 483 | |||
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.95 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.91 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.91 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.91 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.91 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.88 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.86 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.85 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.84 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.84 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.83 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.81 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.78 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.77 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.77 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.76 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.74 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.74 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.74 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.73 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.72 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.71 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.71 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.71 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.69 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.69 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.68 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.68 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.67 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.66 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.66 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.66 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.66 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.65 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.65 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.64 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.64 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.64 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.63 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.61 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.61 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.57 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.54 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.53 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.52 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.49 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.49 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.48 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.4 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.38 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.35 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.19 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.03 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.88 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.86 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.71 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.32 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 80.3 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.17 |
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=4.5e-67 Score=534.81 Aligned_cols=424 Identities=70% Similarity=1.243 Sum_probs=371.9
Q ss_pred hhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCC
Q 011570 12 LSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQ 91 (483)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 91 (483)
+++++.+..+|+.+|||.+|..+..++|++..||.|+|+|+++||.++.+.+.+++.+.+...... +.........+|+
T Consensus 2 ~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~ 80 (428)
T d1iaya_ 2 LSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANFQ 80 (428)
T ss_dssp CCTTGGGC-----CCTTHHHHHHHHSBCCSSSSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC-----CHHHHHHCC
T ss_pred cccccccCCCCCCChhhHhHHHhccCCCCCcCCCCceEEeecccCccchHHHHHHHHhCCchhhhH-hHhhhCHHhccCc
Confidence 578899999999999999999999999999999999999999999999999999998876543321 2233334567899
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
++.|.++||++||+|+++++|..+++++++|++|+|+++++..++.++++|||.|+++.|+|+.+...+....|++++++
T Consensus 81 ~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 160 (428)
T d1iaya_ 81 DYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPI 160 (428)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEe
Confidence 99999999999999999998877778999999999999999999999999999999999999999888775558999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+++..++|.+|++.++.++......+.++++++++|||||||.+++.+++++|+++|++||++||+||+|.++.|++ ..
T Consensus 161 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~-~~ 239 (428)
T d1iaya_ 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT-PQ 239 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS-SC
T ss_pred ecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCc-cc
Confidence 99988899999999999888777777889999999999999999999999999999999999999999999998987 77
Q ss_pred cchHHHhhhhcc--ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHH
Q 011570 252 FVSIAEIIDQDI--ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 252 ~~s~~~l~~~~~--~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
+.++.++..... ....+++++++||||.|+++|+|+||++++++.+.+.+.....+..++.+.|.++++.+....+++
T Consensus 240 ~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~~ 319 (428)
T d1iaya_ 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTCHHHHH
T ss_pred ccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhhhcccc
Confidence 778777643211 113578999999999999999999999998888888888777777788899999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPG 409 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~ 409 (483)
+++++.++.++++++.+.+.|+..|+++.+|+||+|+|++++.........++.++++.|++++||.+.||+.|+..+++
T Consensus 320 ~~~~~~~~~l~~r~~~~~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g 399 (428)
T d1iaya_ 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPG 399 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSS
T ss_pred ccccccccccchhHHHHHHHHHhCCCEEecCCcceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCC
Confidence 89999999999999999999999999999999999999999987666666677789999999999999999999988899
Q ss_pred EEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 410 WFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 410 ~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
|+||+|+..++++++++++||++++...
T Consensus 400 ~~Ris~a~~~~~~l~~al~Rl~~~l~~~ 427 (428)
T d1iaya_ 400 WFRVCFANMDDGTVDIALARIRRFVGVE 427 (428)
T ss_dssp EEEEECSSSCHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999998668889999999999998654
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=4.6e-67 Score=535.23 Aligned_cols=425 Identities=56% Similarity=1.041 Sum_probs=370.2
Q ss_pred hhhhhhcCCCCCCCccchhhhhhhcCCCCCCCCCCCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCC
Q 011570 12 LSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQ 91 (483)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~ 91 (483)
+++|+.-..+|..+|||.+|..+..++|++..||.|+|+|+++||.++.+.+++++.+.+........+......+..|+
T Consensus 2 ~~~~~~~~~~~~~s~y~~g~~~~~~~~~~~~~np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~ 81 (431)
T d1m7ya_ 2 LSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQ 81 (431)
T ss_dssp CCSTTC-------CHHHHHHHHHHHSBCCSSSCTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCC
T ss_pred cchhhcccCCccCCchhhhhhhhhcCCCCCcCCCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCc
Confidence 46777777899999999999999999999999999999999999999999999999886654333322222234566899
Q ss_pred CCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEe
Q 011570 92 DYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPV 171 (483)
Q Consensus 92 ~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v 171 (483)
++.|.++||++||+|+++++|..+++++++|++|+|+++++..++.++++|||.|+++.|+|+.+...+....|++++++
T Consensus 82 ~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v 161 (431)
T d1m7ya_ 82 DYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPI 161 (431)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccc
Confidence 99999999999999999998877788999999999999999999999999999999999999999988876558999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
+++++++|.+|++.+++++.+....+.++++++++|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ..
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~-~~ 240 (431)
T d1m7ya_ 162 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS-PS 240 (431)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-SC
T ss_pred cccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCC-CC
Confidence 99988899999999999999888888889999999999999999999999999999999999999999999999987 77
Q ss_pred cchHHHhhhhcc----ccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhH
Q 011570 252 FVSIAEIIDQDI----ACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQF 327 (483)
Q Consensus 252 ~~s~~~l~~~~~----~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~ 327 (483)
+.++.++..... ....+++++++||||.||++|+|+||++++++.+.........+..++++.|.++++++.+..+
T Consensus 241 ~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~ 320 (431)
T d1m7ya_ 241 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKL 320 (431)
T ss_dssp CCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhccchh
Confidence 788877654211 0113589999999999999999999999987777777767777777888899888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 328 VEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
.++++.+.+..++++++.+.+.|++.|+++.+|+||+|+|++++.........++.+++++|++++||.+.||+.|+..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~L~~~gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~ 400 (431)
T d1m7ya_ 321 TKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE 400 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcCCcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCCC
Confidence 78889999999999999999999999999999999999999999877777777778899999999999999999999888
Q ss_pred CCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 408 PGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 408 ~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
++|+||+|+..++++++++++||++++++.
T Consensus 401 ~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 401 PGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp TTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 899999998668889999999999999874
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.8e-57 Score=455.49 Aligned_cols=359 Identities=21% Similarity=0.355 Sum_probs=303.3
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.++++++ ++.+.+++.+... ....+|++..|.++||++||+|+...++. ....+++|++
T Consensus 25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~------------~~~~~Y~~~~G~~~lr~aia~~~~~~~~~-~~~~~~~i~~ 91 (388)
T d1gdea_ 25 KDVISLGIGEPDFDTPQHIKEYAKEALD------------KGLTHYGPNIGLLELREAIAEKLKKQNGI-EADPKTEIMV 91 (388)
T ss_dssp TTCEECCCCSCCSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHCC-CCCTTTSEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCccCCCCCcCCHHHHHHHHHHHHhhccc-cCCChheeee
Confidence 46899999998876 4566665543110 12467999999999999999999876652 2346678999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.++++|||.|++++|+|+.|...++.. |.+++.+|++++++|.+|+++|++.+.+ ++++++
T Consensus 92 t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~ 164 (388)
T d1gdea_ 92 LLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILA-GGKPVEVPTYEEDEFRLNVDELKKYVTD------KTRALI 164 (388)
T ss_dssp ESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHH-TCEEEEEECCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred ccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHc-CCEEEEeecccccCCCCCHHHHHHhCcc------CCeEEE
Confidence 999999999999999999999999999999999999886 9999999998888999999999988753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.+++++|+++|++|+++||+||+|.++.+.+ ..+.++.++.. ..+++|+++||||.||+||
T Consensus 165 ~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~S~SK~~~~~G 238 (388)
T d1gdea_ 165 INSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDD-ARHYSIASLDG-----MFERTITVNGFSKTFAMTG 238 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----CGGGEEEEEESTTTTTCGG
T ss_pred ECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhcc-CCCCChhhccC-----CCCeEEEEeCChhhccCcc
Confidence 99999999999999999999999999999999999999987776 56667666643 3578999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
+|+||++++ +.+...+..... ....+.+.|.+++.++.++.+ .+++...++.+++++..+.+.|...++.+..|+|
T Consensus 239 lR~G~ii~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~g 316 (388)
T d1gdea_ 239 WRLGFVAAP-SWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEMGLPTVKPKG 316 (388)
T ss_dssp GCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCB
T ss_pred ccEEEEEee-ccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhccccccCCCc
Confidence 999999995 444444333322 245678889999999988765 5667888888999999999999999999999999
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|+|+|++++.... +..++++.+++++||.+.||+.|+..+++|+||+++ .+++++++++++|++++++.+
T Consensus 317 g~fl~~~l~~~~~-----~~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~-~~~e~l~~al~rL~~~l~e~k 386 (388)
T d1gdea_ 317 AFYIFPRIRDTGL-----TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA-TAYEKLEEAMDRMERVLKERK 386 (388)
T ss_dssp TTEECCBCGGGTC-----CHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHHHHhcC
Confidence 9999999975211 134788899999999999999998777899999998 588999999999999998764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.6e-56 Score=450.82 Aligned_cols=354 Identities=18% Similarity=0.350 Sum_probs=299.3
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|+|+.+++.++ ++.+.+++.+... ....+|+++.|.++||+++|+|+.+.+| +.+++++|++
T Consensus 30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~g--~~~~~~~i~i 95 (388)
T d1j32a_ 30 IDVCSFSAGEPDFNTPKHIVEAAKAALE------------QGKTRYGPAAGEPRLREAIAQKLQRDNG--LCYGADNILV 95 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGGGEEE
T ss_pred CCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHHHHHhcc--cCCCCceEEE
Confidence 47899999998876 4556665543110 1346799999999999999999999888 5688999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
|+|+++++..++.++++|||.|++++|+|+.|...++.. |.+++.++.+.+++|.+|+++|++++.+ ++++++
T Consensus 96 t~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~~~l~~~~~~------~~~~~~ 168 (388)
T d1j32a_ 96 TNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLA-EGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLV 168 (388)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHT-TCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEEE
Confidence 999999999999999999999999999999999988876 9999999998888899999999998753 789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.+++++|+++|+++|++||+||+|.++.|+. ..+.++...... ..+++|+++||||.|++||
T Consensus 169 ~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~-~~~~s~~~~~~~----~~~~~i~~~S~SK~~~~~G 243 (388)
T d1j32a_ 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD-AQHLSIGAASPE----AYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSCHH----HHHTEEEEEESTTTTTCTT
T ss_pred ECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccC-CCCCCHHHhCcc----cccceeEecCChhhhhcch
Confidence 99999999999999999999999999999999999999988887 666666554321 2368999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCC
Q 011570 285 FRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSN 361 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~ 361 (483)
+|+||++++ +.+.+.+.+... ...++.+.|.++..++... ++++++.++.++++++.+.+.|.+. |+.+.+|+
T Consensus 244 lRvG~~~~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~ 319 (388)
T d1j32a_ 244 WRVGFLAGP-VPLVKAATKIQGHSTSNVCTFAQYGAIAAYENS---QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPD 319 (388)
T ss_dssp TCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSC---SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCC
T ss_pred hHeEEEEEC-HHHHHHHHHhhhhccccccHHHHHHHhhcccch---HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCC
Confidence 999999994 555555444332 3457788888887777553 3457888899999999999999988 89999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||+|+|++++.... ++.+++.+|++++||.+.||+.|+ .++|+||+|+ .++++++++++||+++++..
T Consensus 320 gg~~l~~~l~~~~~-----~~~~~~~~ll~~~gV~v~pG~~F~--~~~~~Rls~~-~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 320 GAFYMFPSIAKTGR-----SSLDFCSELLDQHQVATVPGAAFG--ADDCIRLSYA-TDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp BTTEECCBCGGGTC-----CHHHHHHHHHHHHCEECEEGGGGT--CTTBEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEe-CCHHHHHHHHHHHHHHHHHh
Confidence 99999999986322 234788999999999999999997 4689999998 58999999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.9e-56 Score=444.21 Aligned_cols=350 Identities=21% Similarity=0.376 Sum_probs=292.1
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|++++++++ ++.+.+++.+... ....+|+++.|.++||+++++|+.+.++ +.+++++|+
T Consensus 30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~lR~~ia~~~~~~~~--~~~~~~~i~ 95 (382)
T d1b5pa_ 30 GVDLVALTAGEPDFDTPEHVKEAARRALA------------QGKTKYAPPAGIPELREALAEKFRRENG--LSVTPEETI 95 (382)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHTTC--CCCCGGGEE
T ss_pred CCCeEECCCCCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCCCCHHHHHHHHhhhhhhcc--cccccccce
Confidence 457899999998876 4566665543110 1346899999999999999999998877 568999999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|+.|...++.. |.+++.++++++++|.+|++.+++++.+ +++++
T Consensus 96 it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i 168 (382)
T d1b5pa_ 96 VTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFA-GGVVVEVETLPEEGFVPDPERVRRAITP------RTKAL 168 (382)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHTTCCT------TEEEE
T ss_pred ecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHh-cCeEEEEecccccccCCCHHHHHHhCCC------CCeEE
Confidence 9999999999999999999999999999999999988886 9999999998888899999999987753 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
++||||||||.+++.+++++|+++|++||++||+||+|.++.|++ ..+.+ ... ..+++|+++||||.|++|
T Consensus 169 ~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~-~~~-------~~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 169 VVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSP-GRV-------APEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCG-GGT-------CTTTEEEEEESTTTTTCG
T ss_pred EECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCC-CCCCH-HHc-------CCCCEEEEecchhhccCc
Confidence 999999999999999999999999999999999999999998876 44333 223 347899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... ....+.+.|.++..++......+.+....++.++++++.+.+.+...|+++..|+
T Consensus 240 GlR~G~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~p~ 318 (382)
T d1b5pa_ 240 GWRIGYACGP-KEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS 318 (382)
T ss_dssp GGCCEEEECC-HHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCCCS
T ss_pred HhheEEEEEC-HHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhcCCeEecCC
Confidence 9999999994 555554443332 2446778888888877776666788888899999999999999998899999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
||+|+|++++.... ++..+.+.++ ++||.+.||+.|+. ++++||+++ .++|+++++++||++++
T Consensus 319 gg~~~~~~~~~~~~-----~~~~~~~~l~-e~gV~v~PG~~F~~--~~~iRis~~-~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 319 GAFYVLMDTSPIAP-----DEVRAAERLL-EAGVAVVPGTDFAA--FGHVRLSYA-TSEENLRKALERFARVL 382 (382)
T ss_dssp BTTEEEEECTTTCS-----SHHHHHHHHH-HTTEECEESGGGTC--TTEEEEECC-SCHHHHHHHHHHGGGGC
T ss_pred ceEEEeEeCCCCCC-----CHHHHHHHHH-HCCEEEEeCcccCC--CCeEEEEEc-CCHHHHHHHHHHHHHhC
Confidence 99999999965321 1234555555 66999999999974 679999998 58899999999998753
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.5e-54 Score=435.71 Aligned_cols=355 Identities=22% Similarity=0.370 Sum_probs=293.8
Q ss_pred CCCcccccchhh---hhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 45 PNGVIQMGLAEN---LLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
..++|+|+++++ +++ ++.+.+++.+... ....+|+++.|.++||++||+++.+.+| +.++++
T Consensus 29 G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~ 94 (395)
T d1xi9a_ 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK------------EGHNYYGDSEGLPELRKAIVEREKRKNG--VDITPD 94 (395)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHC--CCCCGG
T ss_pred CCCeEECCCCCCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCCCCHHHHHHHHHhhhhccc--cccccc
Confidence 356899999875 333 4556665544110 1245799999999999999999999888 667899
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++.+++.+++++||.|++++|+|+.|...+... |++++.+++..+++|.+|++.+++.+.+ ++
T Consensus 95 ~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~ 167 (395)
T d1xi9a_ 95 DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFY-GGKPVEYRTIEEEDWQPDIDDIRKKITD------RT 167 (395)
T ss_dssp GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEEEEGGGTSEECHHHHHHHCCT------TE
T ss_pred ccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhc-CCEEEEEeccccccccchHHHHHHhhcc------cc
Confidence 9999999999999999999999999999999999999998886 9999999988888899999999988753 78
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|+. .. .+...+. ..+++|+++||||+|
T Consensus 168 ~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~-~~~~~~~------~~~~vi~~~S~SK~~ 239 (395)
T d1xi9a_ 168 KAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG-EH-ISPGSLT------KDVPVIVMNGLSKVY 239 (395)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS-CC-CCHHHHC------SSSCEEEEEESTTTT
T ss_pred cEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccc-cc-cchhhcC------CCCCEEEEeCcchhc
Confidence 999999999999999999999999999999999999999999987765 33 4444443 357899999999999
Q ss_pred CCCCceEEEEEecC-hH----HHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011570 281 GFPGFRVGIIYSYN-DQ----VVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG 354 (483)
Q Consensus 281 g~~GlRiG~li~~~-~~----l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g 354 (483)
++||+|+||+++.. .. +.+....... ...++.++|.++..++.+. .+|+++.++.++++++.+.+.|.+.+
T Consensus 240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~L~~~~ 316 (395)
T d1xi9a_ 240 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTGP---MDYLKEYMKKLKERRDYIYKRLNEIP 316 (395)
T ss_dssp CCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999987643 22 2222222222 2457788998888777643 24578888899999999999999884
Q ss_pred -ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 355 -IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 355 -i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+.+..|+||+|+|++++.... .++.+++.++++++||.+.||+.|+..+++|+||+++ .+++++++++++|+++
T Consensus 317 ~~~~~~p~gg~~~~~~l~~~~~----~~~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~~-~~~e~l~eal~rl~~~ 391 (395)
T d1xi9a_ 317 GISTTKPQGAFYIFPKIEVGPW----KNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL-PPIEILEEAMDRFEKF 391 (395)
T ss_dssp TEECCCCCBSSEECCEECSCSC----SSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-SCHHHHHHHHHHHHHH
T ss_pred CceecCCCeeEEEeEECCCCCC----CCHHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEec-CCHHHHHHHHHHHHHH
Confidence 688899999999999975321 1244788999999999999999998777889999997 5899999999999999
Q ss_pred HHH
Q 011570 434 MLK 436 (483)
Q Consensus 434 l~~ 436 (483)
+++
T Consensus 392 l~e 394 (395)
T d1xi9a_ 392 MKE 394 (395)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.9e-53 Score=431.79 Aligned_cols=372 Identities=20% Similarity=0.325 Sum_probs=293.5
Q ss_pred CCCCCCCCCcccccchhhhhcH-----HHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCC
Q 011570 39 YHPTKNPNGVIQMGLAENLLCH-----ELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGN 113 (483)
Q Consensus 39 ~~~~~~~~~~i~l~~~~n~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~ 113 (483)
+.+..++.++|+|++++|.+++ +.+.+.+.+.. .....++|++..|.++||++||+|+.+.++.
T Consensus 23 ~~~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~ 91 (412)
T d1bw0a_ 23 AKPSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAI-----------DSQECNGYFPTVGSPEAREAVATWWRNSFVH 91 (412)
T ss_dssp CCCCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHH-----------HTTCSSSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHh-----------hCCCCCCCCCCcCCHHHHHHHHHHHHHhcCc
Confidence 4566777899999999876532 23333332210 0124568999999999999999999987642
Q ss_pred ----CCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHH
Q 011570 114 ----RITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189 (483)
Q Consensus 114 ----~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 189 (483)
+..+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++.. |++++.++++++++|.++++.+++.
T Consensus 92 ~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-G~~~~~v~~~~~~~~~~~~~~l~~~ 170 (412)
T d1bw0a_ 92 KEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAY-GIGMHFYNCRPENDWEADLDEIRRL 170 (412)
T ss_dssp STTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHT-TCEEEEEEEEGGGTTEECHHHHHHH
T ss_pred ccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhcc-CccccccccccccccchhhHHHHhh
Confidence 24578999999999999999999999999999999999999999998886 9999999999888999999999887
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe
Q 011570 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269 (483)
Q Consensus 190 i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 269 (483)
+. .++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++ ....+........ ....+
T Consensus 171 ~~------~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~-~~~~~~~~~~~~~--~~~~~ 241 (412)
T d1bw0a_ 171 KD------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG-KDPNATFTSVADF--ETTVP 241 (412)
T ss_dssp CC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS-SCTTCCCCCTTSS--CCSCC
T ss_pred hh------ccccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCC-CCCcccccccccc--ccccc
Confidence 64 378999999999999999999999999999999999999999999998876 3322222111100 02356
Q ss_pred EEEEecCccccCCCCceEEEEEecCh-----HHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q 011570 270 IHIVYSLSKDMGFPGFRVGIIYSYND-----QVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERH 343 (483)
Q Consensus 270 vi~~~S~SK~~g~~GlRiG~li~~~~-----~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 343 (483)
+++++||||.++++|+|+||++++++ .+......... ....+++.|.+++..+.+.. ++++.+.++.+++++
T Consensus 242 ~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r 319 (412)
T d1bw0a_ 242 RVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTP--QEHLDQIVAKIEESA 319 (412)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHH
T ss_pred cccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhccccccccc--ccccccccchhHHHH
Confidence 88899999999999999999998643 22222222222 23355566655555443322 456888899999999
Q ss_pred HHHHHhhhcC-CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHH
Q 011570 344 KAFTWGLSQV-GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRT 422 (483)
Q Consensus 344 ~~l~~~L~~~-gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~ 422 (483)
+.+.+.|.+. |+.+..|+||+|+|++++.... .....+.+++++|++++||.+.||+.|+ .++|+|||++ .++++
T Consensus 320 ~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v~PG~~Fg--~~g~iRis~~-~~~e~ 395 (412)
T d1bw0a_ 320 MYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY-RDIKTDVEFFEKLLEEENVQVLPGTIFH--APGFTRLTTT-RPVEV 395 (412)
T ss_dssp HHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB-SSCCSHHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECC-SCHHH
T ss_pred HHHHHHHHHhcCceecCCCCceEEEEeCChhhc-CCCCCHHHHHHHHHHhCCEEEEeccccC--CCCeEEEEEc-CCHHH
Confidence 9999999876 9999999999999999874221 1223456899999999999999999997 4689999997 58999
Q ss_pred HHHHHHHHHHHHHHh
Q 011570 423 MEIALSRITSFMLKN 437 (483)
Q Consensus 423 l~~~l~~L~~~l~~~ 437 (483)
++++++||++++++.
T Consensus 396 l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 396 YREAVERIKAFCQRH 410 (412)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999876
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.2e-53 Score=430.84 Aligned_cols=363 Identities=18% Similarity=0.270 Sum_probs=294.5
Q ss_pred Ccccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEEE
Q 011570 47 GVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIVM 124 (483)
Q Consensus 47 ~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~i 124 (483)
++|||+.+++.++ ++.+.+++.+..... -...++|++..|.++||++||+|+.+.+| .++++ ++|++
T Consensus 27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~---------~~~~~~Y~~~~G~~~lReaiA~~~~~~~g--~~~~p~~~I~i 95 (418)
T d2r5ea1 27 KPLNLGQGFPDYHAPKYALNALAAAANSP---------DPLANQYTRGFGHPRLVQALSKLYSQLVD--RTINPMTEVLV 95 (418)
T ss_dssp CCEECSSSCCSSCCCHHHHHHHHHHHTCS---------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--SCCCTTTSEEE
T ss_pred CCEEccCCCCCCCCCHHHHHHHHHHHhCC---------CccCcCCCCCCCCHHHHHHHHHHHHHHhC--CCCCccceEEE
Confidence 5699999988765 455666654421110 01345799999999999999999999888 55675 79999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCC--------CcccCHHHHHHHHHHHHhc
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSN--------DFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~--------~~~~d~~~l~~~i~~~~~~ 196 (483)
|+|+++++..+++++++|||.|++++|+|+.|...+... |.+++.++++.++ .|..+.+.+.....
T Consensus 96 t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 169 (418)
T d2r5ea1 96 TVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAA-GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN----- 169 (418)
T ss_dssp ESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-----
T ss_pred cCCCchhhhhhhhhccccccceeccccccchhhHHHHHc-CCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-----
Confidence 999999999999999999999999999999999999886 9999999986532 36678888776653
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
.++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.+.+ ....++..+.. ..+++++++|+
T Consensus 170 -~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~-~~~~s~~~~~~-----~~~~~i~~~S~ 242 (418)
T d2r5ea1 170 -EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP-FEHIRICTLPG-----MWERTITIGSA 242 (418)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----TGGGEEEEEEH
T ss_pred -ccccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCC-Ccccccccccc-----ccceeeeeecC
Confidence 488999999999999999999999999999999999999999999988776 55566666543 45789999999
Q ss_pred ccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChh----HHHHHHHHHHHHHHHHHHHHHHhh
Q 011570 277 SKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQ----FVEKFIAESAKRIAERHKAFTWGL 350 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~l~~~L 350 (483)
||.+++||+|+||++++ +.+.+.+.+... ...++++.|.+++.++.... ..++|+++.++.++.+++.+.+.|
T Consensus 243 SK~~~~pGlRiG~~~~~-~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L 321 (418)
T d2r5ea1 243 GKTFSLTGWKIGWAYGP-EALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFL 321 (418)
T ss_dssp HHHTTCGGGCCEEEESC-HHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCCccccccccc-chhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhH
Confidence 99999999999999995 555555444332 34577888887776654321 124567888899999999999999
Q ss_pred hcCCceeecCCceEEEeeecCchhhc------cChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----CCCEEEEEeccCC
Q 011570 351 SQVGIGCLKSNAGLFLWMDLHHLLKE------QTYEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCFANMD 419 (483)
Q Consensus 351 ~~~gi~~~~~~~g~f~~~~l~~~~~~------~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----~~~~iRis~~~~~ 419 (483)
++.|+++..|+||||+|++++..... ....++.+|++.|++++||.+.||+.|+.. +++|||||++ .+
T Consensus 322 ~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~-~~ 400 (418)
T d2r5ea1 322 AEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF-KK 400 (418)
T ss_dssp HHTTCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECC-SC
T ss_pred hhcCCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEec-CC
Confidence 99999999999999999999753211 112346689999999999999999999764 2479999997 58
Q ss_pred HHHHHHHHHHHHHHHH
Q 011570 420 DRTMEIALSRITSFML 435 (483)
Q Consensus 420 ~e~l~~~l~~L~~~l~ 435 (483)
+|++++++++|++++.
T Consensus 401 ~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 401 DENLQKAAEILRKWKG 416 (418)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 8999999999999864
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=3.1e-53 Score=427.62 Aligned_cols=359 Identities=16% Similarity=0.203 Sum_probs=287.1
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+++++.++ ++.+.+++.+... ....+|++ |.++||++||+|+.+.+| +++++++|+
T Consensus 30 g~~vi~l~~g~pdf~~p~~v~~al~~~~~------------~~~~~Y~~--g~~~Lr~aia~~~~~~~g--~~~~~~~I~ 93 (394)
T d1c7na_ 30 GNEVVPLSVADMEFKNPPELIEGLKKYLD------------ETVLGYTG--PTEEYKKTVKKWMKDRHQ--WDIQTDWII 93 (394)
T ss_dssp CTTCCCCCSSSCSSCCCHHHHHHHHHHHH------------HCCCSSBC--CCHHHHHHHHHHHHHHHC--CCCCGGGEE
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHHh------------CCCcCCCC--CCHHHHHHHHHHHHHhcC--CCCCCcceE
Confidence 457899999998886 5666666654110 12356754 689999999999999888 668899999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC-CCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD-SSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+|+|+++++..++.++++|||.|+++.|.|..+...+... |.+.+.++.. .++.|.+|.+.++..+.. +++++
T Consensus 94 vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~~~-----~~~~~ 167 (394)
T d1c7na_ 94 NTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQ-ERKIIECELLEKDGYYTIDFQKLEKLSKD-----KNNKA 167 (394)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTT-TCEEEECCCEEETTEEECCHHHHHHHHTC-----TTEEE
T ss_pred eeccchhhhhhhhccccccccccccccCcccchhhHHhhh-hhcccccccccccccccchhhhhhhhhcc-----ccceE
Confidence 9999999999999999999999999999999999988876 9999888864 345677898888877642 47999
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
+++||||||||.+++.+++++|+++|++++++||+||+|.++.|++ ..+.+....... ..++++++.|+||.||+
T Consensus 168 i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~----~~~~~i~~~s~SK~~~~ 242 (394)
T d1c7na_ 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPG-YEHTVFQSIDEQ----LADKTITFTAPSKTFNI 242 (394)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTT-CCCCCGGGSCHH----HHTTEEEEECSHHHHTC
T ss_pred EEecccccccceeccHHHhhhhhccccccceeEeccccccccccCC-ccccchhhhhcc----cccceeecccccccccc
Confidence 9999999999999999999999999999999999999999998876 444443332221 23788999999999999
Q ss_pred CCceEEEEEecChHHHHHHHHhhhcC-CCC-hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceee
Q 011570 283 PGFRVGIIYSYNDQVVSCARKMSSFG-LVS-SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCL 358 (483)
Q Consensus 283 ~GlRiG~li~~~~~l~~~~~~~~~~~-~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~ 358 (483)
+|+|+||+++++..+.+.+.+..... ..+ ...+.+++.... .. ..++.++.++.++++++.+.+.++.. ++.+.
T Consensus 243 ~G~R~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (394)
T d1c7na_ 243 AGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICY-KE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAP 320 (394)
T ss_dssp GGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHH-HH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCC
T ss_pred cccccccccccChhhhhhhhhhhhhccccccccccchhhhhhh-cc-hhhhhcccccccchhhhhhhhhhhccccceeec
Confidence 99999999998888877766655432 222 232323222221 11 24567777888888888888888764 67888
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.|+||+|+|++++.... +..++++.|++++||.+.||+.|+..+++|+|||++ .++++++++++||++++++.+
T Consensus 321 ~p~g~~~~~~~~~~~~~-----~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~~-~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 321 LIEGTYLQWIDFRALKM-----DHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLA-APSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp CCSBSSEEEEECGGGCC-----CHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceeEEEEECCCCCC-----CHHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEEe-CCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999985311 234789999999999999999998777899999998 588999999999999998864
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.9e-52 Score=414.64 Aligned_cols=345 Identities=26% Similarity=0.414 Sum_probs=285.5
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
..++|+|+.+++.++ ++.+.+.+.+... ....+|+++.|.++||+++++++...++ .++++++|+
T Consensus 27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~------------~~~~~Y~~~~G~~~lR~aia~~~~~~~~--~~~~~~~i~ 92 (375)
T d1o4sa_ 27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQ------------KGEVKYTDPRGIYELREGIAKRIGERYK--KDISPDQVV 92 (375)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCTTCCHHHHHHHHHHHHHHHT--CCCCGGGEE
T ss_pred CCCeEECCCcCCCCCCCHHHHHHHHHHHh------------cCCcCCCCCcCCHHHHHHHHhhhhhccc--ccccccccc
Confidence 457899999998875 4555555543111 1345799999999999999999998887 668899999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+|+++||.|++++|+|+.|...+... |...+.++.++++++.+|.+.++.... .+++++
T Consensus 93 ~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 165 (375)
T d1o4sa_ 93 VTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILA-GGTVNVVETFMSKNFQPSLEEVEGLLV------GKTKAV 165 (375)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCGGGTTCCCHHHHHHTCC------TTEEEE
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcc-ccccccccccccccccchhHHHHHhhc------cCccEE
Confidence 9999999999999999999999999999999999988876 999999999888899999998877654 478999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++|+++||+||+|.++.+.. .. .+...... ..+++|+++||||.||+|
T Consensus 166 ~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~~-~~~~~~~~-----~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 166 LINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EF-TSILDVSE-----GFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CC-CCHHHHCS-----SSTTEEEEEESTTTTTCG
T ss_pred EEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccc-cc-cccccccC-----CCCCEEEEeechhhccCC
Confidence 999999999999999999999999999999999999999887665 33 34444433 568999999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+........ .......+......+... ....++.++++++.+.+.|.+.|+++.+|+
T Consensus 239 G~R~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~l~~~g~~~~~p~ 311 (375)
T d1o4sa_ 239 GWRVGYLISS-EKVATAVSKIQSHTTSCINTVAQYAALKALEVD------NSYMVQTFKERKNFVVERLKKMGVKFVEPE 311 (375)
T ss_dssp GGCCEEEECC-HHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred cccccccccc-ccchhhhhhhhccccccccccchhhhhhhcccc------hhhhHHHHHHHHHHHHHHHHhcCceEecCC
Confidence 9999999995 4444444333222 335566666666665543 234456788889999999999999999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFML 435 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~ 435 (483)
||+|+|++++.. +.+++.++++++||.++||+.|+ .++|+||+++ .+++++++++++|+++++
T Consensus 312 gg~f~~~~~~~~--------~~~~~~~ll~~~gV~v~pG~~F~--~~g~iRis~~-~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 312 GAFYLFFKVRGD--------DVKFCERLLEEKKVALVPGSAFL--KPGFVRLSFA-TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp BSSEEEEECSSC--------HHHHHHHHHHHHCEECEEGGGGT--CTTEEEEECC-SCHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEECCCC--------HHHHHHHHHHhCCEEEEEccccC--CCCeEEEEEc-CCHHHHHHHHHHHHHHhc
Confidence 999999999852 34788899988999999999997 4679999998 589999999999999885
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-52 Score=424.20 Aligned_cols=362 Identities=19% Similarity=0.333 Sum_probs=295.8
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCC-CcEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDP-DRIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~-~~i~ 123 (483)
.++|+|+++++.++ ++.+.+++.+.... -...++|++..|.++||++||+++++.+| .++++ ++|+
T Consensus 25 ~dvI~l~~G~p~~~~p~~v~~a~~~al~~----------~~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~ 92 (418)
T d1w7la_ 25 HDVVNLGQGFPDFPPPDFAVEAFQHAVSG----------DFMLNQYTKTFGYPPLTKILASFFGELLG--QEIDPLRNVL 92 (418)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTSS----------CGGGGSCCCTTCCHHHHHHHHHHHHHHHT--CCCCHHHHEE
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHhC----------CCcccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCccccee
Confidence 47899999998776 56666666542111 12345799999999999999999998887 45665 6899
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC----------CCCcccCHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS----------SNDFKVTMEALEAAYEKA 193 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~----------~~~~~~d~~~l~~~i~~~ 193 (483)
+|+|+++++..++++++++||.|++++|+|+.|...+... |.+++.++... +.+|.+|.+++.....
T Consensus 93 it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 169 (418)
T d1w7la_ 93 VTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMA-GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-- 169 (418)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC--
T ss_pred eccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHc-CCEeeccccccccccccccccccCcccchhhhhcccc--
Confidence 9999999999999999999999999999999999998886 99999888643 2356777777665543
Q ss_pred HhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 194 QESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|++ ..+.++.++.. ..++++++
T Consensus 170 ----~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~-~~~~~~~~~~~-----~~~~~i~~ 239 (418)
T d1w7la_ 170 ----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG-HQHISIASLPG-----MWERTLTI 239 (418)
T ss_dssp ----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT-CCCCCGGGSTT-----TGGGEEEE
T ss_pred ----ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCC-CCCCCHHHccc-----ccccccee
Confidence 478999999999999999999999999999999999999999999998887 66677766643 45789999
Q ss_pred ecCccccCCCCceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhH----HHHHHHHHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQF----VEKFIAESAKRIAERHKAFT 347 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~l~ 347 (483)
.|+||.+++||+|+||++++ +.+...+.+... ...+++++|.+++.++.+... ..+++...++.++++++.+.
T Consensus 240 ~S~SK~~~~pG~RvG~~v~~-~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~ 318 (418)
T d1w7la_ 240 GSAGKTFSATGWKVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMI 318 (418)
T ss_dssp EEHHHHTTCGGGCCEEEECC-HHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred cccCccccCCCCcccccccc-hhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Confidence 99999999999999999994 556555555443 245788999888877765332 13567788889999999999
Q ss_pred HhhhcCCceeecCCceEEEeeecCchhhc-------cChHHHHHHHHHHHHhcCeEeeCCCCCCCC-----CCCEEEEEe
Q 011570 348 WGLSQVGIGCLKSNAGLFLWMDLHHLLKE-------QTYEAEMALWRVIINEVKLNVSPGSSFHCP-----NPGWFRVCF 415 (483)
Q Consensus 348 ~~L~~~gi~~~~~~~g~f~~~~l~~~~~~-------~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-----~~~~iRis~ 415 (483)
+.|++.|+++.+|+||+|+|++++..... .....+.+++.+|++++||.|.||+.|+.. .++|||||+
T Consensus 319 ~~L~~~g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~ 398 (418)
T d1w7la_ 319 RSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCF 398 (418)
T ss_dssp HHHHTTTCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEEC
T ss_pred hhhhhcCCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEE
Confidence 99999999999999999999999754321 111235689999999999999999999742 467999999
Q ss_pred ccCCHHHHHHHHHHHHHHH
Q 011570 416 ANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 416 ~~~~~e~l~~~l~~L~~~l 434 (483)
+ .+++++++++++|+++.
T Consensus 399 ~-~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 399 V-KDEATLQAMDEKLRKWK 416 (418)
T ss_dssp C-CCHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHh
Confidence 7 58899999999998864
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-51 Score=409.62 Aligned_cols=353 Identities=14% Similarity=0.224 Sum_probs=282.6
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
+|+|+++++.++ ++.+.+++.+... ....+|++..| +++|++|++++.+++| .++++++|++|+
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~------------~~~~~Y~~~~g-~~lr~~ia~~~~~~~g--~~~~~~~i~it~ 65 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLM------------HGVFGYSRWKN-DEFLAAIAHWFSTQHY--TAIDSQTVVYGP 65 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHT------------TCCCCCCCSCC-HHHHHHHHHHHHHHSC--CCCCGGGEEEES
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHh------------CCCCCCCCCCC-HHHHHHHHHHHHHHhC--CCCCcceEEEeC
Confidence 478888888887 4667776654211 12357998888 7899999999999887 668899999999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC-CCCcccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS-SNDFKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
|+++++..++.++++|||+|++++|+|+.|...++.. |.++++++.+. +++|.+|++.+++.+.+ +++++|++
T Consensus 66 G~~~~l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l 139 (361)
T d1d2fa_ 66 SVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGN-QRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLL 139 (361)
T ss_dssp CHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHT-TCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEE
T ss_pred CHHHHHHHHhhhccccccccccccccccchhHHHHhh-cceEEeecccccccccccccccchhhccc-----CCceeEEe
Confidence 9999999999999999999999999999999988876 99999998753 45678999999998854 48999999
Q ss_pred eCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCc
Q 011570 206 TNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGF 285 (483)
Q Consensus 206 ~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~Gl 285 (483)
+|||||||.+++.+++++|+++|+++|++||+||+|.++.|++ ....++... ..++++++.|+||.++++|+
T Consensus 140 ~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~-~~~~~~~~~-------~~~~~v~~~s~SK~~~~~g~ 211 (361)
T d1d2fa_ 140 CSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGE-QPHIPWSNV-------ARGDWALLTSGSKSFNIPAL 211 (361)
T ss_dssp ESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSS-SCCCCGGGT-------CCSSEEEEECSHHHHTCGGG
T ss_pred cccccccccccchhhhhhhhhhhhhhheeeeeccccccccccc-ccccccccc-------cccccccccccccccccccc
Confidence 9999999999999999999999999999999999999988876 544555444 34789999999999999999
Q ss_pred eEEEEEecChHHHHH-HHHhhhcCCCC---hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--Cceeec
Q 011570 286 RVGIIYSYNDQVVSC-ARKMSSFGLVS---SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV--GIGCLK 359 (483)
Q Consensus 286 RiG~li~~~~~l~~~-~~~~~~~~~~s---~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--gi~~~~ 359 (483)
|+||++.++...... ..........+ ...+.+....+. ...++.++.+..++++++.+.+.+.+. ++.+.+
T Consensus 212 R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 288 (361)
T d1d2fa_ 212 TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ---QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI 288 (361)
T ss_dssp CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cceeeecchhHHHHHHhhhcccccccccchhhhHHHHHHHhh---ccchhhhcccccchhhHHHHHHHhhhhcccccccc
Confidence 999998866544333 33333332222 223332222222 224456777788888888887776654 778889
Q ss_pred CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Q 011570 360 SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 360 ~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~~ 438 (483)
|+||+|+|++++... .+..+++.+|++++||.|.||+.|+..+++|+|||++ .+++++++++++|++++++.+
T Consensus 289 p~gg~~~~~~l~~~~-----~~~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~~-~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 289 PQSTYLAWLDLRPLN-----IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAG-CPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp CSBCSEEEEECGGGC-----CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred cCceeEEEEEccCCC-----CCHHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEEc-CCHHHHHHHHHHHHHHHHhcC
Confidence 999999999986321 1234889999999999999999998777889999997 588999999999999998764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-50 Score=406.59 Aligned_cols=350 Identities=19% Similarity=0.291 Sum_probs=288.9
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC-cEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD-RIV 123 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~-~i~ 123 (483)
.++|||+.+.+.++ ++.+.+++.+... ...++|++..|.++||++||+|+++.+| +.++++ +|+
T Consensus 26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~------------~~~~~Y~~~~G~~~LReaia~~~~~~~g--~~~~~~~~I~ 91 (382)
T d1u08a_ 26 HQAINLSQGFPDFDGPRYLQERLAHHVA------------QGANQYAPMTGVQALREAIAQKTERLYG--YQPDADSDIT 91 (382)
T ss_dssp TTCEECCCSSCSSCCCHHHHHHHHHHHH------------TTCCSCCCTTCCHHHHHHHHHHHHHHHS--CCCCTTTTEE
T ss_pred CCCEEccCCCCCCCCCHHHHHHHHHHHh------------cCCCCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCCceEE
Confidence 47799999998775 4566666554110 2346899999999999999999999888 556776 599
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++.+++++++++||.|++++|+|+.+...+... |..++.+++++ .++.+|++++++.+.+ +++++
T Consensus 92 vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~-~~~~~d~~~l~~~~~~------~~~~i 163 (382)
T d1u08a_ 92 VTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALS-GGIVKRMALQP-PHFRVDWQEFAALLSE------RTRLV 163 (382)
T ss_dssp EESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECCT-TTCCCCHHHHHHHCCT------TEEEE
T ss_pred eccchHHHHHHHHhhcccccceEEEecccccchhhhhhhc-cccceeccccc-ccccCCHHHHhhhhcc------CccEE
Confidence 9999999999999999999999999999999999988886 99888888764 5678899999887653 89999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|.+++++++.||+|..+.+.. ....+...... ..+++|++.|+||.+++|
T Consensus 164 ~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~-~~~~~~~~~~~-----~~~~~i~~~s~SK~~~~p 237 (382)
T d1u08a_ 164 ILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQ-QGHASVLAHPQ-----LRERAVAVSSFGKTYHMT 237 (382)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCS-SCCCCGGGSHH-----HHTTEEEEEEHHHHTTCG
T ss_pred EECCCCcccccccccccchhhhhhhccccceeeeecchhhccccc-ccccccccccc-----ccCcEEEEeeccccccCC
Confidence 999999999999999999999999999999999999998876665 33333332222 347899999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh--cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS--FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~--~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~ 361 (483)
|+|+||++++ +.+.+.+..... ...++.+.|.+++.++.++ .+++.+.++.++++++.+.+.+...|+.+.+|+
T Consensus 238 G~RiG~~v~~-~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~p~ 313 (382)
T d1u08a_ 238 GWKVGYCVAP-APISAEIRKVHQYLTFSVNTPAQLALADMLRAE---PEHYLALPDFYRQKRDILVNALNESRLEILPCE 313 (382)
T ss_dssp GGCCEEEECC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHC---THHHHTHHHHHHHHHHHHHHHTTSSSCEECCCC
T ss_pred cccchhhhcc-chhHHHHHhhhcccccccccccccccccccccc---hHHHHHHHHHHHhhhhhhhhhhccCCcEEecCC
Confidence 9999999994 555554444332 3558889999998888754 245788889999999999999998899999999
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITS 432 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~ 432 (483)
||+|+|++++..... ++.+|+++|++++||.+.||+.|+.+ +.+|+|||++ .++|+++++++||++
T Consensus 314 gg~~~~~~~~~~~~~----d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~-~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 314 GTYFLLVDYSAVSTL----DDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA-KKESTLLAAAERLRQ 381 (382)
T ss_dssp BSSEEEEECTTTCCS----CHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC-SCHHHHHHHHHHHTT
T ss_pred ceEEEEEecCCCCCC----CHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEe-CCHHHHHHHHHHHhC
Confidence 999999999863221 24478999999999999999999754 3579999998 588999999999975
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-49 Score=405.08 Aligned_cols=365 Identities=18% Similarity=0.272 Sum_probs=288.9
Q ss_pred CCCcccccchhhh---hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC-cCCC
Q 011570 45 PNGVIQMGLAENL---LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT-FDPD 120 (483)
Q Consensus 45 ~~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~-~~~~ 120 (483)
..++|+|+.+.+. +|.+.+.+++.+.... ......+|+++.|.++||++||+|+.+.+| +. ++++
T Consensus 37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~ 105 (420)
T d1vp4a_ 37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEK---------EYHYTLQYSTTEGDPVLKQQILKLLERMYG--ITGLDED 105 (420)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHH---------SHHHHTSCCCTTCCHHHHHHHHHHHHHHHC--CCSCCGG
T ss_pred CCCcEecCCcCCCCccCCHHHHHHHHHHHHhh---------CCccccCCCCCcCCHHHHHHHHHHHHHHhC--CCCCCHH
Confidence 3578999998753 2444455544331000 012346899999999999999999999887 43 6899
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcC---
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESN--- 197 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~--- 197 (483)
+|++|+|+++++.+++.++++|||.|++++|+|+.|...++.. |++++.+|.++.+ +|++.++..+.+.....
T Consensus 106 ~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~-g~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~ 181 (420)
T d1vp4a_ 106 NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQY-LANFVVVPLEDDG---MDLNVLERKLSEFDKNGKIK 181 (420)
T ss_dssp GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-TCEEEEEEEETTE---ECHHHHHHHHHHHHHTTCGG
T ss_pred HeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHH-hhhcccccccccc---cccchhhhhhhhhHHHhhcc
Confidence 9999999999999999999999999999999999999988886 9999999987654 78888888776543322
Q ss_pred CceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCc
Q 011570 198 IRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLS 277 (483)
Q Consensus 198 ~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~S 277 (483)
....+++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|.+ ....+..... ..+++++++|+|
T Consensus 182 ~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~-~~~~~~~~~~------~~~~~i~~~s~s 254 (420)
T d1vp4a_ 182 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG-ETVDPIFKIG------GPERVVLLNTFS 254 (420)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSS-CCCCCHHHHH------CTTTEEEEEEST
T ss_pred ccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccC-cccccccccc------cccceeEEeccc
Confidence 234455678999999999999999999999999999999999999998877 5445555443 457899999999
Q ss_pred cccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC--
Q 011570 278 KDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-- 353 (483)
Q Consensus 278 K~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-- 353 (483)
|.++ +|+|+||+++ ++.+++.+.+.... ..++.+.|.+++.++.+..+ .+++++.++.++++++.+.+.|.+.
T Consensus 255 k~~~-~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~ 331 (420)
T d1vp4a_ 255 KVLA-PGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIELYRRKRTVMLNALEEYFS 331 (420)
T ss_dssp TTTC-GGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cccc-cccccccccc-cchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHHHhhhhcccchhhhhhhhc
Confidence 9885 9999999999 45555555443322 44678888888888876554 5567777788888888888777653
Q ss_pred ---CceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC--CCEEEEEeccCCHHHHHHHHH
Q 011570 354 ---GIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN--PGWFRVCFANMDDRTMEIALS 428 (483)
Q Consensus 354 ---gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~--~~~iRis~~~~~~e~l~~~l~ 428 (483)
|+++.+|+||+|+|++++...+.. ++++.| +++||.|.||+.|+..+ .+|+||||+..++++++++++
T Consensus 332 ~~~g~~~~~p~gg~f~~~~~~~~~d~~------~~~~~l-~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~ 404 (420)
T d1vp4a_ 332 DIPGVKWVKSEGGLFIWLTLPEGFDTW------EMFEYA-KRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIK 404 (420)
T ss_dssp TSTTCEECCCSBSSEEEEECCTTCCTT------TTHHHH-HHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHH
T ss_pred cCCCcEEecCCceEEEEEECCCCCCHH------HHHHHH-HHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHH
Confidence 789999999999999998755443 344444 46799999999998643 579999998668899999999
Q ss_pred HHHHHHHHhhhcc
Q 011570 429 RITSFMLKNVEAK 441 (483)
Q Consensus 429 ~L~~~l~~~~~~~ 441 (483)
+|++++++.+++|
T Consensus 405 rL~~~l~~~~~~~ 417 (420)
T d1vp4a_ 405 RLREVVLEYGKEK 417 (420)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHhh
Confidence 9999999998774
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=3.1e-49 Score=399.46 Aligned_cols=363 Identities=16% Similarity=0.253 Sum_probs=286.4
Q ss_pred CCcccccchhhh---hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcE
Q 011570 46 NGVIQMGLAENL---LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRI 122 (483)
Q Consensus 46 ~~~i~l~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i 122 (483)
.++|+|+.+.+. +|.+.+.+++.+.... ...+..+|+++.|+++||++||+|+++.+| .++++++|
T Consensus 29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~---------~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g--~~~~~~~I 97 (403)
T d1wsta1 29 SDVISLAGGLPAPETFPVETIKKIAVEVLEE---------HADKALQYGTTKGFTPLRLALARWMEKRYD--IPMSKVEI 97 (403)
T ss_dssp SSCEECCCCCCCGGGSCHHHHHHHHHHHHHH---------SHHHHHSCCCSSCCHHHHHHHHHHHHHHHC--CCCTTCEE
T ss_pred CCcEECCCCCCCccccCHHHHHHHHHHHHHh---------CcccccCCCCCcCCHHHHHHHHHHHHHHhC--CCCChHHe
Confidence 368999988543 2444555554431100 012456899999999999999999998888 56889999
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc-CCcee
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES-NIRIK 201 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~-~~~~~ 201 (483)
++|+|+++++..++.+++++||.|++++|+|+.|...+... |.+++.++.++.+ .+...+.......... .....
T Consensus 98 ~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~-g~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 173 (403)
T d1wsta1 98 MTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYY-DPEFISIPLDDKG---MRVDLLEEKLEELRKQGKRVKI 173 (403)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTT-CCEEEEEEEETTE---ECHHHHHHHHHHHHHTTCCCCE
T ss_pred eecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhc-cccceeEeecccC---Cccccccccchhhhhccccccc
Confidence 99999999999999999999999999999999999999876 9999999987655 3344444333322222 23455
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ .+..++.... ..+++++++||||.++
T Consensus 174 ~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~-~~~~~~~~~~------~~~~~i~~~S~SK~~~ 246 (403)
T d1wsta1 174 VYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSG-EPTPPIKHFD------DYGRVIYLGTFSKILA 246 (403)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCCGGGGC------SSSCEEEEEESTTTTC
T ss_pred cccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCC-CCCCcccccC------CCCcEEEEccccceec
Confidence 67888999999999999999999999999999999999999998887 5555555442 4589999999999996
Q ss_pred CCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC---Cce
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV---GIG 356 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~---gi~ 356 (483)
+|+|+||++++ +.+.+.+.... .....+...|.+.+.++.... .++++++.++.+.++++.+.+.|.+. |+.
T Consensus 247 -~G~RiG~~i~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 323 (403)
T d1wsta1 247 -PGFRIGWVAAH-PHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIPKIIEFYKPRRDAMLEALEEYMPEGVE 323 (403)
T ss_dssp -GGGCCEEEEEC-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred -Ccccccccccc-hHHHHHHHHHHhhhccccccchhhhHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhhccCCeE
Confidence 99999999995 55554443322 224577788888877776654 37778888999999999999999874 788
Q ss_pred eecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 357 CLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 357 ~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
+..|.||+|+|++++...+.. .+++.|+ ++||.|.||+.|+.. .++++||+++..+++++++++++|++++
T Consensus 324 ~~~p~gg~~~~~~~~~~~~~~------~~~~~l~-~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l 396 (403)
T d1wsta1 324 WTKPEGGMFVRVTLPEGIDTK------LMMERAV-AKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETI 396 (403)
T ss_dssp ECCCSBSSEEEEECCTTCCTT------TTHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred EeCCCceeEEEEECCCCCCHH------HHHHHHH-HCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 899999999999999765443 4455555 569999999988754 4579999998678999999999999999
Q ss_pred HHhhhc
Q 011570 435 LKNVEA 440 (483)
Q Consensus 435 ~~~~~~ 440 (483)
++..++
T Consensus 397 ~~~~k~ 402 (403)
T d1wsta1 397 KEEMKR 402 (403)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 977553
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-49 Score=399.04 Aligned_cols=350 Identities=20% Similarity=0.326 Sum_probs=286.5
Q ss_pred CCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEE
Q 011570 45 PNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIV 123 (483)
Q Consensus 45 ~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~ 123 (483)
+.++|+|+.++|.++ ++.+.+++.+.. .+.++|++..|.++||+++|+|+.+.+| +.+++++|+
T Consensus 27 g~~vi~l~~G~p~~~~p~~~~~al~~~~-------------~~~~~Y~~~~G~~~LR~aia~~~~~~~g--~~~~~~~I~ 91 (389)
T d2gb3a1 27 GVRIHHLNIGQPDLKTPEVFFERIYENK-------------PEVVYYSHSAGIWELREAFASYYKRRQR--VDVKPENVL 91 (389)
T ss_dssp TCEEEECSSCCCCSCCCTHHHHHHHHTC-------------CSSCCCCCTTCCHHHHHHHHHHHHHTSC--CCCCGGGEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHhcC-------------CCCCCCCCCcCCHHHHHHHHHHHHHhcC--CCcccceEE
Confidence 457899999998875 455666665421 2457899999999999999999998877 668999999
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
+|+|+++++..++.+++++||.|++++|+|+.+...+... |+.++.++.++++. ..+.+.+...+ .++++++
T Consensus 92 it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~ 163 (389)
T d2gb3a1 92 VTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIA-GVKLIPVTRRMEEG-FAIPQNLESFI------NERTKGI 163 (389)
T ss_dssp EESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHH-TCEEEEEECCGGGT-SCCCTTGGGGC------CTTEEEE
T ss_pred ecccccccccccccccccCCCeEEEeCCCCcccccccccc-Cccccccccccccc-cchhhhhhhhc------ccCccEE
Confidence 9999999999999999999999999999999999998886 99999999876543 33334444333 3478999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++++++||+||+|.++.+.+ .. .+.... ..++++++.|+||.+++|
T Consensus 164 ~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~-~~-~~~~~~-------~~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 164 VLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EF-ASALSI-------ESDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CC-CCGGGS-------CCTTEEEEEESTTTTTCG
T ss_pred EeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccc-cc-cccccc-------ccccccccccccccccCc
Confidence 999999999999999999999999999999999999999987775 33 333322 357889999999999999
Q ss_pred CceEEEEEecChHHHHHHHHhhh-cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-eeecCC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS-FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGI-GCLKSN 361 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~-~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi-~~~~~~ 361 (483)
|+|+||++++++.+......... ....+.+.|.++..++... ++++++.++.++++++.+.+.|.++|+ .+..|.
T Consensus 235 GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 311 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLD---DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 311 (389)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS
T ss_pred ccceeeeeccchhHHHHHhhhhhcccccccccccccccccccc---chhcccccccccccchhhhhhhhhhccccccCCC
Confidence 99999999987777766554443 3446667777777777654 346788888999999999999999965 567889
Q ss_pred ceEEEeeecCchhhccChHHHHHHHHHHHHh-----cCeEeeCCCCCCCC---CCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 362 AGLFLWMDLHHLLKEQTYEAEMALWRVIINE-----VKLNVSPGSSFHCP---NPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 362 ~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v~pg~~f~~~---~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+|+|+++|.. +..++++.|+++ .||.+.||+.|+.. +++|+||+++ .+++++++++++|+++
T Consensus 312 ~g~~~~~~lp~~-------~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~-~~~~~l~~a~~~L~~~ 383 (389)
T d2gb3a1 312 GAFYITAELPVE-------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEG 383 (389)
T ss_dssp BSSEEEEECSSS-------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCC-------CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEc-CCHHHHHHHHHHHHHH
Confidence 999999999752 134788888876 47899999988753 3579999997 6899999999999999
Q ss_pred HHHh
Q 011570 434 MLKN 437 (483)
Q Consensus 434 l~~~ 437 (483)
+++.
T Consensus 384 lk~f 387 (389)
T d2gb3a1 384 LKMF 387 (389)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=6.8e-49 Score=392.18 Aligned_cols=339 Identities=22% Similarity=0.332 Sum_probs=279.0
Q ss_pred CCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEE
Q 011570 46 NGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVM 124 (483)
Q Consensus 46 ~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~i 124 (483)
.++|||+.+.+.++ ++.+.+++.+. +...++|+++.|.++||++||++++ +++++|++
T Consensus 25 ~~~I~ls~g~p~~~~p~~i~~al~~~-------------l~~~~~Y~~~~G~~elr~aiA~~~~--------~~~~~Iii 83 (368)
T d1v2da_ 25 LGAVNLGQGFPSNPPPPFLLEAVRRA-------------LGRQDQYAPPAGLPALREALAEEFA--------VEPESVVV 83 (368)
T ss_dssp HTCEECCCCSCSSCCCHHHHHHHHHH-------------TTTSCSCCCTTCCHHHHHHHHHHHT--------SCGGGEEE
T ss_pred CCCEEecCCCCCCCCCHHHHHHHHHH-------------hhcccCCCCCcCCHHHHHHHHhhcc--------cCCcceee
Confidence 36799999987665 46666666542 1234689999999999999999986 68999999
Q ss_pred eCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC-CCCcccCHHHHHHHHHHHHhcCCceeEE
Q 011570 125 SGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS-SNDFKVTMEALEAAYEKAQESNIRIKGV 203 (483)
Q Consensus 125 t~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~i 203 (483)
|+|+++++..++.+++.+||.|+++.|+|+.+...+... |.+++.++++. .+++.+|++.+++++.+ +++++
T Consensus 84 t~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i 156 (368)
T d1v2da_ 84 TSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLA-GAKARLVRLDLTPEGFRLDLSALEKALTP------RTRAL 156 (368)
T ss_dssp ESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHT-TCEEEEEECEEETTEEECCHHHHHTTCCT------TEEEE
T ss_pred ccchHHHHHHHhhccccccccccccCCcchhhhhHHHhc-CCccceeccccccccccCCHHHHHHhhcc------CceEE
Confidence 999999999999999999999999999999999988886 99998888753 34688999999988764 78999
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+++|||||||.+++.+++++|+++|++||++||+||+|..+.+.. .. ...... ..++++++.|+||.++++
T Consensus 157 ~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~-~~-~~~~~~-------~~~~~~~~~~~sk~~~~~ 227 (368)
T d1v2da_ 157 LLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE-RP-RRLREF-------APERTFTVGSAGKRLEAT 227 (368)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CC-CCHHHH-------CTTTEEEEEEHHHHTTCG
T ss_pred EEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccc-cc-cccccc-------cccccceeeccccccccc
Confidence 999999999999999999999999999999999999998765544 32 232222 347788899999999999
Q ss_pred CceEEEEEecChHHHHHHHHhh-hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc
Q 011570 284 GFRVGIIYSYNDQVVSCARKMS-SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA 362 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~ 362 (483)
|+|+||++++++.+........ ....++++.|.+++.++....+ .+++++.++.++++++++.+.|+++|+++..|+|
T Consensus 228 G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~p~g 306 (368)
T d1v2da_ 228 GYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEG 306 (368)
T ss_dssp GGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHTTCCEECCSB
T ss_pred ccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhcCcEEecCCc
Confidence 9999999996554443332222 2345788899888888876544 5678888899999999999999999999999999
Q ss_pred eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC--CCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 363 GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP--NPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 363 g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~--~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
|+|+|++++.. + ..++++++||.++||+.|+.. .++++|||++ .++|++++++++|++++
T Consensus 307 ~~~~~~~l~~~-~----------~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~-~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 307 TYFLMAELPGW-D----------AFRLVEEARVALIPASAFYLEDPPKDLFRFAFC-KTEEELHLALERLGRVV 368 (368)
T ss_dssp SSEEEEECTTC-C----------HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECC-SCHHHHHHHHHHHHHHC
T ss_pred eeEEEEeCCcc-H----------HHHHHHhCCEEEEechhhCCCCCCCCEEEEEec-CCHHHHHHHHHHHHHhC
Confidence 99999999842 1 123577889999999998754 4679999997 58899999999999864
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.5e-47 Score=378.88 Aligned_cols=335 Identities=18% Similarity=0.280 Sum_probs=270.2
Q ss_pred CCCCCcccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCc
Q 011570 43 KNPNGVIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDR 121 (483)
Q Consensus 43 ~~~~~~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~ 121 (483)
.+|.++|||+.|+|+++ ++.+.+++.+. ...+..||+. |..+||++||++++ +++++
T Consensus 19 ~~p~~~idls~~~np~~~p~~~~~a~~~~-------------~~~~~~Yp~~-~~~~Lr~aia~~~~--------v~~~~ 76 (355)
T d1lc5a_ 19 ISPDQLLDFSANINPLGMPVSVKRALIDN-------------LDCIERYPDA-DYFHLHQALARHHQ--------VPASW 76 (355)
T ss_dssp SCGGGSEECSSCCCTTCCCHHHHHHHHHT-------------GGGGGSCCCT-TCHHHHHHHHHHHT--------SCGGG
T ss_pred CChhheEEccCCCCCCCCCHHHHHHHHHH-------------HHHhccCCCC-ChHHHHHHHHHHhC--------CCHHH
Confidence 45678999999999986 45566666542 1245679765 56999999999986 68899
Q ss_pred EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 122 IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 122 i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
|++|+|+++++..++..+ .|+.+++..|+|+.|....... +.+++.++++.+++|.++.+ +++++ .++++
T Consensus 77 I~~~~g~~~~~~~~~~~~--~~~~~~v~~p~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~~~------~~~~~ 146 (355)
T d1lc5a_ 77 ILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQS-GCEIRRWSLREADGWQLTDA-ILEAL------TPDLD 146 (355)
T ss_dssp EEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHHHHHT-TCEEEEEECCGGGTTCCCTT-HHHHC------CTTCC
T ss_pred EEecccHHHHHHHHHhhh--ccccccccCCccceeccccccc-cccceeeeeeccCCccceee-eeecc------ccccc
Confidence 999999999999988776 3455667789998888877775 99999999987777887743 44443 34899
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
+|+++|||||||.+++.+++++|+++|++|++++|+||+|.++.+.. ..... ... ..+++++++||||.||
T Consensus 147 ~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~-~~~~~---~~~-----~~~~~i~~~S~SK~~~ 217 (355)
T d1lc5a_ 147 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE-TGFIP---ALK-----DNPHIWVLRSLTKFYA 217 (355)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTC-CCSGG---GCT-----TCTTEEEEEESTTTTT
T ss_pred eeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeec-ccccc---ccc-----ccccceeecccccccc
Confidence 99999999999999999999999999999999999999999866554 32222 222 4578999999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS 360 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~ 360 (483)
++|+|+||++++++.+.+.++.....+.++.++|.++..++.+..+ ..+.++.++++++++.+.|.++ |+++. |
T Consensus 218 l~GlR~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p 292 (355)
T d1lc5a_ 218 IPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAW----QQATWHWLREEGARFYQALCQLPLLTVY-P 292 (355)
T ss_dssp CTTTCCEEEECCCHHHHHHHHHHSCTTCSCHHHHHHHHHGGGCHHH----HHHHHHHHHHHHHHHHHHHHTSTTEEEC-C
T ss_pred cccccccceeccchhhhHHHHhhcCCccccccccccccccccccch----hHHHHHHHHHHHHHHHHHHhhcCCcEEC-C
Confidence 9999999999977777777776666677899999999999988654 5666778889999999999988 67765 4
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l 434 (483)
.+|+|+|++++.. . .++++.|+ ++||.|+||+.|+...++|+||+++ +++++++++++|++++
T Consensus 293 ~~~~f~~~~~~~~--~------~~~~~~L~-~~gv~vr~~~~f~~~~~~~iRis~~--~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 293 GRANYLLLRCERE--D------IDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVL 355 (355)
T ss_dssp CSSSEEEEEESCT--T------CCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEECCCC--H------HHHHHHHH-HCCcEEEeCccCCCCCCCEEEEEeC--CHHHHHHHHHHHHHhC
Confidence 5668999999751 1 25666676 5699999999998767889999998 7899999999998864
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-45 Score=366.90 Aligned_cols=322 Identities=16% Similarity=0.278 Sum_probs=256.8
Q ss_pred CCcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEe
Q 011570 46 NGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMS 125 (483)
Q Consensus 46 ~~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it 125 (483)
.+.|.|+.|||+++++. + ... ..+++||++. ..+||+++|++++ +++++|++|
T Consensus 27 ~~~i~L~~ne~p~~~~~------~------~~~------~~l~rYPd~~-~~~Lr~~ia~~~g--------v~pe~I~it 79 (354)
T d1fg7a_ 27 NGDVWLNANEYPTAVEF------Q------LTQ------QTLNRYPECQ-PKAVIENYAQYAG--------VKPEQVLVS 79 (354)
T ss_dssp TCSEECSSCCCSSCCCC------C------CCC------CCTTSCCCSS-CHHHHHHHHHHHT--------SCGGGEEEE
T ss_pred CCCEEeeCCCCCCCCCH------H------HHH------HHHhcCCCCc-HHHHHHHHHHHhC--------CChHHeeec
Confidence 45689999999876321 0 000 2356898775 5899999999986 689999999
Q ss_pred CChhHHHHHHHHHhcCCCC-eEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEE
Q 011570 126 GGATGAHETVAFCLADPGD-AFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVL 204 (483)
Q Consensus 126 ~G~~~al~~~~~~l~~~gd-~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~ 204 (483)
+|++++|..+++++++||| .|+++.|+|..|...++.. |.+++.++.++ +|.+|++.++..+ .++++|+
T Consensus 80 ~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~-g~~v~~~~~~~--~~~~d~~~l~~~~-------~~~~~v~ 149 (354)
T d1fg7a_ 80 RGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETI-GVECRTVPTLD--NWQLDLQGISDKL-------DGVKVVY 149 (354)
T ss_dssp SHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHH-TCEEEECCCCT--TSCCCHHHHHTSC-------TTEEEEE
T ss_pred cCchHHHHHHHHHhhccccccccccccccccchhhhhcc-Cceeecccccc--ccccchhhhhhcc-------cccceee
Confidence 9999999999999999998 5888999999999988886 99999988764 7899999988765 2789999
Q ss_pred EeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 205 ITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 205 l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
++|||||||.+++.++++.+.+.++ ++.++|+||+|.++.+.. .. .. ... ..+++++++||||.||++|
T Consensus 150 ~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~-~~-~~---~~~-----~~~~~iv~~S~SK~~~laG 218 (354)
T d1fg7a_ 150 VCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQA-SL-AG---WLA-----EYPHLAILRTLSKAFALAG 218 (354)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGG-CS-GG---GTT-----TCTTEEEEEESSSTTCCGG
T ss_pred ccCCCccceeEeeeccccccccccc-ccccccccccchhhcccc-cc-ch---hhc-----ccccceEEeCCccccCCCc
Confidence 9999999999999999999988876 466788888887754332 11 11 222 4688999999999999999
Q ss_pred ceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecCCce
Q 011570 285 FRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKSNAG 363 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~~~g 363 (483)
+|+||+++ ++++++.+.+....+.+++++|.+++.++.+..+ .+.....+.+.++++.+.+.|.+++ +....|.++
T Consensus 219 lRiGy~i~-~~~~i~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~ 295 (354)
T d1fg7a_ 219 LRCGFTLA-NEEVINLLMKVIAPYPLSTPVADIAAQALSPQGI--VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSET 295 (354)
T ss_dssp GCCEEEEE-CHHHHHHHHHHSCSSCSCHHHHHHHHHHTSHHHH--HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSS
T ss_pred cccccccc-cchhhhhhhhhcCccchhhHHHHHHHHHHhhhcc--ccccccchhhhhHHHHHHHHHHhCCCcceeCCCCc
Confidence 99999999 5666677777777777889988888877766543 3345556677888899999999885 555667778
Q ss_pred EEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHH
Q 011570 364 LFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRIT 431 (483)
Q Consensus 364 ~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~ 431 (483)
+|+|+++++ ..++++.|++ +||+|++|..|.. .++|+|||++ ++++++.++++|+
T Consensus 296 ~f~~~~~~~---------~~~~~~~L~~-~gIlvr~~~~~~~-~~~~lRisig--t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 296 NYILARFKA---------SSAVFKSLWD-QGIILRDQNKQPS-LSGCLRITVG--TREESQRVIDALR 350 (354)
T ss_dssp SEEEEEETT---------HHHHHHHHHH-TTEECEECTTSTT-CTTEEEEECC--CHHHHHHHHHHHH
T ss_pred eEEEEeCCC---------HHHHHHHHHH-CCcEEecCCCCCC-CCCEEEEEeC--CHHHHHHHHHHHh
Confidence 899999874 2257777764 5999999988753 4689999998 7888888888875
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=4.7e-46 Score=375.73 Aligned_cols=345 Identities=15% Similarity=0.146 Sum_probs=272.5
Q ss_pred Ccccccchh----hh--hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAE----NL--LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~----n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+.|||+++. +. ..++.++++...... -...+.|++..|.++||+++++++.+.++ ..++++
T Consensus 29 ~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~-----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~ 95 (401)
T d7aata_ 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAA-----------KKMDKEYLPIAGLADFTRASAELALGENS--EAFKSG 95 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CcEEccCCCCcCCCCCCCCCHHHHHHHHHHhh-----------CCCCCCCCCCCCCHHHHHHHHHHHhccCC--cccCcC
Confidence 458999983 22 234666665543111 01234799999999999999999987765 446778
Q ss_pred cEEEeCChh-----HHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 121 RIVMSGGAT-----GAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 121 ~i~it~G~~-----~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
+|+++.|+. +++..++.++++|||.|++++|+|+.|...++.. |++++++|+.++++|.++++.+++.+...
T Consensus 96 ~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 172 (401)
T d7aata_ 96 RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDA-GLQLQAYRYYDPKTCSLDFTGAMEDISKI-- 172 (401)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHHHTTS--
T ss_pred ceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHc-CCeEEEEeccccccccccHHHHHHHHhcC--
Confidence 887765543 5778888899999999999999999999999986 99999999988888999999988877532
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH--HHhhhhccccCCCeEEEE
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI--AEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~--~~l~~~~~~~~~~~vi~~ 273 (483)
.++++++++++||||||.+++.+++++|+++|++|+++||+||+|.++.|++ ....+. ..... ..++++++
T Consensus 173 -~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~-----~~~~~~~~ 245 (401)
T d7aata_ 173 -PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD-INRDAWALRHFIE-----QGIDVVLS 245 (401)
T ss_dssp -CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC-HHHHTHHHHHHHH-----TTCCCEEE
T ss_pred -CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCC-cccchhhhhhhhh-----hhccccee
Confidence 3478899999999999999999999999999999999999999999988875 322222 12222 45778889
Q ss_pred ecCccccCCCCceEEEEEecChHHHHHHH--------HhhhcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHH
Q 011570 274 YSLSKDMGFPGFRVGIIYSYNDQVVSCAR--------KMSSFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAER 342 (483)
Q Consensus 274 ~S~SK~~g~~GlRiG~li~~~~~l~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~ 342 (483)
.|+||.++++|+|+||++++...+....+ ....+...+.+.|.+++.++.+..+. .++++..+++++++
T Consensus 246 ~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T d7aata_ 246 QSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISM 325 (401)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996554332211 11233557788999999999886543 45567788899999
Q ss_pred HHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccC
Q 011570 343 HKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANM 418 (483)
Q Consensus 343 ~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~ 418 (483)
|+.+.+.|++++ +.+.++++|||+|+.++. +++++|++++||.+.|| +||++++.
T Consensus 326 r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~gV~~~pg----------~Ris~a~~ 384 (401)
T d7aata_ 326 RTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKP-----------EQVERLTKEFSIYMTKD----------GRISVAGV 384 (401)
T ss_dssp HHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTT----------CEEEGGGC
T ss_pred HHHHHHHHHHhCCCCCcceECCCCeEEEecCCCH-----------HHHHHHHHhCCEEECCC----------cEEEeccC
Confidence 999999999885 456789999999987752 56788999999999987 39999878
Q ss_pred CHHHHHHHHHHHHHHHH
Q 011570 419 DDRTMEIALSRITSFML 435 (483)
Q Consensus 419 ~~e~l~~~l~~L~~~l~ 435 (483)
++++++.+.++|.++++
T Consensus 385 ~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 385 ASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp CTTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhC
Confidence 88999999999988753
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-43 Score=348.47 Aligned_cols=317 Identities=15% Similarity=0.171 Sum_probs=246.5
Q ss_pred CCCCCcccccchhhhhc-HHHHHH-HHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 43 KNPNGVIQMGLAENLLC-HELVED-WLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 43 ~~~~~~i~l~~~~n~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
....++|+|++|||+++ ++.+.+ ....... .....| +..|.++||++||+|++.. + ++++
T Consensus 16 ~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~------------~~~~~y-p~~g~~~Lr~aia~~~~~~-~----v~~d 77 (334)
T d2f8ja1 16 TEKRDKTYLALNENPFPFPEDLVDEVFRRLNS------------DALRIY-YDSPDEELIEKILSYLDTD-F----LSKN 77 (334)
T ss_dssp CCCCCSEECSSCCCSSCCCHHHHHHHHHHCCT------------TGGGSC-CCSSCHHHHHHHHHHHTCS-S----CCGG
T ss_pred ccCCCceEEECCCCCCCCCHHHHHHHHHHhhc------------chhcCC-CCCCcHHHHHHHHHHhccc-C----CCcc
Confidence 34568999999999987 344444 3333221 123445 4568999999999999753 2 6899
Q ss_pred cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCce
Q 011570 121 RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRI 200 (483)
Q Consensus 121 ~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 200 (483)
+|++|+|+++++++++. +||+|++++|+|+.|...++.. |++++++|++++..+ +.. ...++
T Consensus 78 ~I~it~G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~-g~~~v~v~~~~~~~~--~~~-----------~~~~~ 139 (334)
T d2f8ja1 78 NVSVGNGADEIIYVMML----MFDRSVFFPPTYSCYRIFAKAV-GAKFLEVPLTKDLRI--PEV-----------NVGEG 139 (334)
T ss_dssp GEEEEEHHHHHHHHHHH----HSSEEEECSSCCHHHHHHHHHH-TCCEEECCCCTTSCC--CCC-----------CCCTT
T ss_pred eEEecCcchhHHHHHhh----hccccccccccccccccchhcc-CCccccccccccccc--ccc-----------ccccc
Confidence 99999999999988765 4699999999999999999886 999999999865422 110 11367
Q ss_pred eEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCcccc
Q 011570 201 KGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDM 280 (483)
Q Consensus 201 ~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~ 280 (483)
++++++|||||||.+++.+++.++ .++++++|+||+|.++.+.. . ..... ..+++++++||||++
T Consensus 140 ~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~~~-~---~~~~~-------~~~~~i~~~S~SK~~ 204 (334)
T d2f8ja1 140 DVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHGES-Y---VDFLK-------KYENLAVIRTFSKAF 204 (334)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTCCC-C---GGGGG-------TCSSEEEEEESTTTS
T ss_pred eEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhcccc-c---ccccc-------cCceEEEEecCcccc
Confidence 899999999999999998776554 45789999999997643322 1 11111 458999999999999
Q ss_pred CCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 281 GFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 281 g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
+++|+|+||+++ ++.+...+......+.++.++|.++.+++.+.+ ++++.++.++++++++.+.|+++|+++.++
T Consensus 205 ~~~G~R~G~~~~-~~~~i~~l~~~~~~~~~s~~~~~~a~~~l~~~~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~ 279 (334)
T d2f8ja1 205 SLAAQRVGYVVA-SEKFIDAYNRVRLPFNVSYVSQMFAKVALDHRE----IFEERTKFIVEERERMKSALREMGYRITDS 279 (334)
T ss_dssp SCTTTCEEEEEE-CHHHHHHHHHHSCTTCSCHHHHHHHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTCEECCC
T ss_pred chhhhhhhhccc-chHHHHHHHHhhcccccchhhhhhccccccccc----chhhHHHHHHHHHHHHHHHHHHCCCeECCC
Confidence 999999999999 677777777777777789999999888887654 466777888999999999999999999988
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSF 433 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~ 433 (483)
+|+ |+|+.++.. +..++++.|++ +||.|+++ ++|+|||++ +.+++++++++|+++
T Consensus 280 ~g~-f~~~~~~~~-------~~~~~~~~L~~-~GI~vr~~-------~~~vRis~g--~~ee~~~l~~~l~~f 334 (334)
T d2f8ja1 280 RGN-FVFVFMEKE-------EKERLLEHLRT-KNVAVRSF-------REGVRITIG--KREENDMILRELEVF 334 (334)
T ss_dssp CSS-EEEEECCHH-------HHHHHHHHHHH-TTEECEEE-------TTEEEEECC--CHHHHHHHHHHHHHC
T ss_pred Cce-EEEEECCCC-------CHHHHHHHHHH-CCCEECCC-------CCeEEEEcC--CHHHHHHHHHHHhcC
Confidence 876 789988752 23467777764 69999763 468999998 788899999988763
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-45 Score=366.64 Aligned_cols=346 Identities=14% Similarity=0.148 Sum_probs=268.9
Q ss_pred Ccccccchh---hh--h-cHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAE---NL--L-CHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~---n~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+.|||+++. +. . .++.++++....... -.....|++..|.++||+++|+|+.+.++ ..++++
T Consensus 27 ~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~----------~~~~~~Y~p~~G~~~lR~aia~~~~~~~~--~~~~~~ 94 (397)
T d3tata_ 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ----------PHGASLYLPMEGLNCYRHAIAPLLFGADH--PVLKQQ 94 (397)
T ss_dssp SCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS----------CCSSBCCCCTTCCHHHHHHHHHHHTCSSC--HHHHTT
T ss_pred CcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC----------cccCCCCCCcccCHHHHHHHHHHHhhccC--CcCCcC
Confidence 348999982 22 1 246677765442111 12346799999999999999999987766 456788
Q ss_pred cEEEeCChhHH----HHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 121 RIVMSGGATGA----HETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 121 ~i~it~G~~~a----l~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
+|+++.|++++ +.+++..+++|||.|++++|+|+.|...++.. |.+++.+|++.++++..|.+.+.+.+.. .
T Consensus 95 ~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~-G~~~~~v~~~~~~~~~~~~~~~~~~~~~---~ 170 (397)
T d3tata_ 95 RVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA-GFEVSTYPWYDEATNGVRFNDLLATLKT---L 170 (397)
T ss_dssp CEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTT-TCCCEECCCCCTTTSSCCHHHHHHHHTT---C
T ss_pred cEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHc-CCEEEEEecchhhccccchHHHHHHhhh---c
Confidence 99988877764 55666677899999999999999999999986 9999999998888889998888877653 2
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
.+++++++++|||||||.+++.+++++|+++|++++++||+||+|.++.|+. ....+....... ..++++++.|+
T Consensus 171 ~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~----~~~~~i~~~s~ 245 (397)
T d3tata_ 171 PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIAS----AGLPALVSNSF 245 (397)
T ss_dssp CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH-HHHHHHHHHHHT----TTCCCEECBCC
T ss_pred ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC-cccchhhhhhhh----cCCceEEEecC
Confidence 3467889999999999999999999999999999999999999999988875 322222222221 45789999999
Q ss_pred ccccCCCCceEEEEEecChHHHHH------HHH--hhhcCCCChHHHHHHHHhcCChhHH---HHHHHHHHHHHHHHHHH
Q 011570 277 SKDMGFPGFRVGIIYSYNDQVVSC------ARK--MSSFGLVSSQTQHLIATMLSDDQFV---EKFIAESAKRIAERHKA 345 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~l~~~------~~~--~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~ 345 (483)
||.++++|+|+||+++++..+... ... .....+++...|.+++.++.+..+. .++++..+++++++++.
T Consensus 246 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 325 (397)
T d3tata_ 246 SKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQE 325 (397)
T ss_dssp HHHHTBTTTCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999865432211 111 1223446778888888888876543 34456667888889999
Q ss_pred HHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHH
Q 011570 346 FTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDR 421 (483)
Q Consensus 346 l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e 421 (483)
+.+.|...+ +.+.++++|||+|+.++. +++++|++++||.+.||. ||++++.+++
T Consensus 326 l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------e~~~~L~~e~~V~l~~g~----------Ri~~a~~~~~ 384 (397)
T d3tata_ 326 LVKVLSTEMPERNFDYLLNQRGMFSYTGLSA-----------AQVDRLREEFGVYLIASG----------RMCVAGLNTA 384 (397)
T ss_dssp HHHTTTTTCTTSCTTHHHHCCSSBCCCCCCH-----------HHHHHHTTTTCEECCSSS----------CCBTTSCCTT
T ss_pred HHHHHHHhCCCCceEEEcCCCceEEecCcCH-----------HHHHHHHHhCCEEeCCCC----------EEEeccCCHH
Confidence 999998763 677789999999998763 567889999999999873 8999878899
Q ss_pred HHHHHHHHHHHHH
Q 011570 422 TMEIALSRITSFM 434 (483)
Q Consensus 422 ~l~~~l~~L~~~l 434 (483)
+++.+.++|++++
T Consensus 385 ~i~~~~~ai~~v~ 397 (397)
T d3tata_ 385 NVQRVAKAFAAVM 397 (397)
T ss_dssp THHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988753
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2.8e-43 Score=356.43 Aligned_cols=354 Identities=17% Similarity=0.174 Sum_probs=266.1
Q ss_pred CCCCCcccccch----hhh--hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCC
Q 011570 43 KNPNGVIQMGLA----ENL--LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRIT 116 (483)
Q Consensus 43 ~~~~~~i~l~~~----~n~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~ 116 (483)
.+|+ .|||+++ ++. ..++.++++...... +....++|++..|.++||+++++++.+..+ ..
T Consensus 27 ~~~~-kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~----------~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~--~~ 93 (412)
T d1yaaa_ 27 QRAT-KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHN----------DSSYNHEYLGITGLPSLTSNAAKIIFGTQS--DA 93 (412)
T ss_dssp CCSS-CEECSSCCCBCTTSCBCCCHHHHHHHHHHHT----------CTTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HH
T ss_pred CCCC-cEEeecCCCcCCCCCCCCcHHHHHHHHHHHh----------CcccCCCCCCCCCCHHHHHHHHHHHhcccC--cc
Confidence 3443 5899997 222 224666665433110 012346799999999999999999987655 22
Q ss_pred cCCCcEEE--eCChhHHHHHHH--HHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 117 FDPDRIVM--SGGATGAHETVA--FCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 117 ~~~~~i~i--t~G~~~al~~~~--~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
..++.+++ +.|+..++..++ ..+.+|||.|++++|+|+.|...+... |++++.+|+.+++++.++.+.+++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (412)
T d1yaaa_ 94 LQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQ-GLKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTT-TCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred ccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHc-CCceecccccccccccccchhhhccccc
Confidence 23333333 344444444443 445789999999999999999999886 9999999998788899999999888765
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHH--hhhhccccCCCeE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAE--IIDQDIACNRNLI 270 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~--l~~~~~~~~~~~v 270 (483)
. .++++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++ ....+... .... ....+++
T Consensus 173 ~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~~--~~~~~~~ 246 (412)
T d1yaaa_ 173 A---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD-LDKDAYAVRLGVEK--LSTVSPV 246 (412)
T ss_dssp S---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSC-HHHHTHHHHHHHHH--TTTTCCE
T ss_pred C---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCC-cccchhhhhhhhhc--cccCCCe
Confidence 2 3456788999999999999999999999999999999999999999988875 32222211 1100 0145789
Q ss_pred EEEecCccccCCCCceEEEEEecChHHH------HHHH------HhhhcCCCChHHHHHHHHhcCChhHH---HHHHHHH
Q 011570 271 HIVYSLSKDMGFPGFRVGIIYSYNDQVV------SCAR------KMSSFGLVSSQTQHLIATMLSDDQFV---EKFIAES 335 (483)
Q Consensus 271 i~~~S~SK~~g~~GlRiG~li~~~~~l~------~~~~------~~~~~~~~s~~~q~~~~~~l~~~~~~---~~~~~~~ 335 (483)
+++.|+||.|+++|+|+||++++++.+. .... ....+..++.+.|.+++.++.+..+. .++++..
T Consensus 247 i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 326 (412)
T d1yaaa_ 247 FVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTM 326 (412)
T ss_dssp EEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 9999999999999999999999654221 1111 11234557889999999999886543 4567788
Q ss_pred HHHHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEE
Q 011570 336 AKRIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWF 411 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~i 411 (483)
++.++++|+.+.+.|+++| +.+.+++||||+|+.++. +++++|++++||.+.||.
T Consensus 327 ~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls~-----------e~~~~L~~e~~V~~~~g~---------- 385 (412)
T d1yaaa_ 327 SSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTP-----------QMVKRLEETHAVYLVASG---------- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTS----------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcCH-----------HHHHHHHHhCCEEECCCC----------
Confidence 8999999999999998875 566789999999987752 568889999999998863
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 412 RVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 412 Ris~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
||++++.+++.++.+.++|+++++..
T Consensus 386 Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 386 RASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 99998788889999999999988753
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.6e-42 Score=350.96 Aligned_cols=348 Identities=18% Similarity=0.182 Sum_probs=262.4
Q ss_pred Ccccccchh---h---hhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAE---N---LLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~---n---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+.|||+++. + +..++.++++....... -...++|++..|.++||+++++++.+..+ ..++.+
T Consensus 31 ~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~----------~~~~~~Y~p~~G~p~lreaia~~~~~~~~--~~~~~~ 98 (412)
T d1ajsa_ 31 RKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN----------SSLNHEYLPILGLAEFRTCASRLALGDDS--PALQEK 98 (412)
T ss_dssp TCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC----------TTCCCCCCCTTCCHHHHHHHHHHHHCTTC--HHHHTT
T ss_pred CcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhC----------CCcCCCCCCCCCCHHHHHHHHHHHhccCC--cccccc
Confidence 458999982 1 12245666654331100 01235799999999999999999987655 334556
Q ss_pred c--EEEeCChhHHHHHHHHH-------hcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee-cCCCCCcccCHHHHHHHH
Q 011570 121 R--IVMSGGATGAHETVAFC-------LADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV-CDSSNDFKVTMEALEAAY 190 (483)
Q Consensus 121 ~--i~it~G~~~al~~~~~~-------l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~-~~~~~~~~~d~~~l~~~i 190 (483)
+ ++.|.|++.++..+..+ +++|||.|++++|+|+.|...++.. |++.+.++ ..+++.+..|.+.+++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~-G~~~v~~~~~~~~~~~~~d~~~~~~~~ 177 (412)
T d1ajsa_ 99 RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA-GFKDIRSYRYWDTEKRGLDLQGFLSDL 177 (412)
T ss_dssp CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT-TCSCEEEEECEETTTTEECHHHHHHHH
T ss_pred cceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc-CCeEEEeecccccccccccHHHHHHHH
Confidence 5 44555655555544433 4799999999999999999999986 98766554 445566788988888776
Q ss_pred HHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch--HHHhhhhccccCCC
Q 011570 191 EKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS--IAEIIDQDIACNRN 268 (483)
Q Consensus 191 ~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s--~~~l~~~~~~~~~~ 268 (483)
... .++++++++++||||||.+++.+++++|+++|++||++||+||+|.++.|++ ....+ ...... ..+
T Consensus 178 ~~~---~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~~-----~~~ 248 (412)
T d1ajsa_ 178 ENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGN-LEKDAWAIRYFVS-----EGF 248 (412)
T ss_dssp HHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSC-HHHHTHHHHHHHH-----TTC
T ss_pred Hhc---cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCC-cccchhhhhhhhh-----hcc
Confidence 542 3477889999999999999999999999999999999999999999988875 32222 222222 457
Q ss_pred eEEEEecCccccCCCCceEEEEEecChHHHHHHH------H--hhhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHH
Q 011570 269 LIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR------K--MSSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAK 337 (483)
Q Consensus 269 ~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~------~--~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~ 337 (483)
+++++.|+||.++++|+|+||++++...+....+ . ...+...+...|.++..++.+..+ ..++++..++
T Consensus 249 ~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (412)
T d1ajsa_ 249 ELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMAD 328 (412)
T ss_dssp CEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999996543322211 1 122345677889888888877543 3456777889
Q ss_pred HHHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEE
Q 011570 338 RIAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRV 413 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRi 413 (483)
+++++|+.+.+.|++++ +.+..+++|||.|+.++. +++.+|++++||.+.||. ||
T Consensus 329 ~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~ls~-----------~~v~~L~~e~gV~~vpg~----------Ri 387 (412)
T d1ajsa_ 329 RILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNP-----------KQVEYLINQKHIYLLPSG----------RI 387 (412)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCH-----------HHHHHHHHTTCEECCTTS----------EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCCCH-----------HHHHHHHHhCCEEEeCCC----------eE
Confidence 99999999999999885 455678899999987642 557788999999999873 99
Q ss_pred EeccCCHHHHHHHHHHHHHHHHHh
Q 011570 414 CFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 414 s~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
++++.++++++.++++|++++++.
T Consensus 388 ~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 388 NMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp EGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred EeccCCHHHHHHHHHHHHHHHHhc
Confidence 998788999999999999999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-43 Score=354.59 Aligned_cols=351 Identities=17% Similarity=0.187 Sum_probs=262.1
Q ss_pred CCCCCCCCcccccchh---h-h--hcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCC
Q 011570 40 HPTKNPNGVIQMGLAE---N-L--LCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGN 113 (483)
Q Consensus 40 ~~~~~~~~~i~l~~~~---n-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~ 113 (483)
....+| +.|||+++. + . ..++.+.++..+... -...+.|++..|.++||+++|+|+.+.++
T Consensus 21 ~~d~~~-~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~-----------~~~~~~Y~p~~G~~~lR~aia~~~~~~~~- 87 (396)
T d2q7wa1 21 RADERP-GKINLGIGVYKDETGKTPVLTSVKKAEQYLLE-----------NETTKNYLGIDGIPEFGRCTQELLFGKGS- 87 (396)
T ss_dssp --------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHH-----------HCCCCCCCCTTCCHHHHHHHHHHHHCTTC-
T ss_pred hccCCC-CcEEeeCCCccCCCCCCCCCHHHHHHHHHHhh-----------CCCCCCCCCCcCCHHHHHHHHHHHHhhcC-
Confidence 333344 358999982 2 1 224566665543111 02345799999999999999999987665
Q ss_pred CCCcCCCc--EEEeCChhHHHHHHHH--HhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHH
Q 011570 114 RITFDPDR--IVMSGGATGAHETVAF--CLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAA 189 (483)
Q Consensus 114 ~~~~~~~~--i~it~G~~~al~~~~~--~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 189 (483)
..+.++. +++|.|++.++.+++. .++++||.|++++|+|+.|...+... |++++.+++..++++..+...+++.
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 165 (396)
T d2q7wa1 88 -ALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSA-GLEVREYAYYDAENHTLDFDALINS 165 (396)
T ss_dssp -HHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHT-TCEEEEEECEETTTTEECHHHHHHH
T ss_pred -CcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHc-CCeeEecccccccccccccchHHHH
Confidence 2334443 4467777666655554 44789999999999999999999886 9999999998777888888887776
Q ss_pred HHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe
Q 011570 190 YEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269 (483)
Q Consensus 190 i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 269 (483)
... ...++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.|++ ....+......+ ..++
T Consensus 166 ~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~----~~~~ 237 (396)
T d2q7wa1 166 LNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAA----MHKE 237 (396)
T ss_dssp HTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHH----HCSC
T ss_pred HHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCC-ccCchHhhhhhh----hccc
Confidence 543 23467889999999999999999999999999999999999999999988875 332333322221 3477
Q ss_pred EEEEecCccccCCCCceEEEEEecChHHHHHHHH--------hhhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHH
Q 011570 270 IHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--------MSSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKR 338 (483)
Q Consensus 270 vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~ 338 (483)
++++.|+||.++++|+|+||+++++..+...... ...+...+...|.++..++.+... .++++++.+++
T Consensus 238 ~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (396)
T d2q7wa1 238 LIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR 317 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred ccccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8889999999999999999999976543322111 123355677788888888887543 35667788899
Q ss_pred HHHHHHHHHHhhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE
Q 011570 339 IAERHKAFTWGLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVC 414 (483)
Q Consensus 339 l~~~~~~l~~~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis 414 (483)
++++++.+.+.|+++| +.+..+++|+|.|+.++. +++++|++++||.+.||+ ||+
T Consensus 318 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~~-----------e~~~~L~~e~gV~~~~g~----------Ri~ 376 (396)
T d2q7wa1 318 IQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTK-----------EQVLRLREEFGVYAVASG----------RVN 376 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCCH-----------HHHHHHHHhCCEEECCCC----------EEE
Confidence 9999999999999986 455678889999987753 567889999999998874 999
Q ss_pred eccCCHHHHHHHHHHHHHHH
Q 011570 415 FANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 415 ~~~~~~e~l~~~l~~L~~~l 434 (483)
++..++++++.+.++|++++
T Consensus 377 ~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 377 VAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp GGGCCTTTHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHHHHHHHhC
Confidence 98788899999999998763
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.6e-41 Score=341.57 Aligned_cols=344 Identities=15% Similarity=0.177 Sum_probs=259.2
Q ss_pred Ccccccchh------hhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC
Q 011570 47 GVIQMGLAE------NLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD 120 (483)
Q Consensus 47 ~~i~l~~~~------n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~ 120 (483)
+.|||+++. ++.+++.+++++.+... -...++|++..|+++||+++++++.+..+ ....++
T Consensus 27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~-----------~~~~~~Y~p~~G~~~lr~aia~~~~~~~~--~~~~~~ 93 (394)
T d2ay1a_ 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLE-----------TETTKTYAGLSGEPEFQKAMGELILGDGL--KSETTA 93 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHH-----------HCCCCCCCCSSCCHHHHHHHHHHHHGGGC--CGGGEE
T ss_pred CCEEccCCCccCCCCCCCCCHHHHHHHHHHhh-----------CCCCCCCCCCCCCHHHHHHHHHHHhcccc--cccccc
Confidence 458999983 22234667766554211 01235799999999999999999986654 222334
Q ss_pred cEEEeCCh-hHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 121 RIVMSGGA-TGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 121 ~i~it~G~-~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
.+++++|+ ..++...+..+.++||.|++++|+|+.|...++.. |.+++.+++..++++..+.+.+++..... .++
T Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 169 (394)
T d2ay1a_ 94 TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFM-GLPVQTYRYFDAETRGVDFEGMKADLAAA---KKG 169 (394)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHH-TCCEEEEECEETTTTEECHHHHHHHHHTC---CTT
T ss_pred ceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHc-CCEEEEecccchhcccccchhHHHHHhhc---ccC
Confidence 44444443 34466666777899999999999999999999987 99999999877777788888877766532 345
Q ss_pred eeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccc
Q 011570 200 IKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKD 279 (483)
Q Consensus 200 ~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~ 279 (483)
++++++++||||||.+++.+++++|+++|++++++||+||+|.++.|++ ....+....... ...+++++.|+||.
T Consensus 170 ~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~-~~~~~~~~~~~~----~~~~~~~~~s~sk~ 244 (394)
T d2ay1a_ 170 DMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL-EEDAAGTRLIAS----RIPEVLIAASCSKN 244 (394)
T ss_dssp CEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH-HHHHHHHHHHHH----HCSSEEEEEECTTT
T ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccc-cccchhhhhhhh----hccccccccccccc
Confidence 6788889999999999999999999999999999999999999988875 332333322211 23578889999999
Q ss_pred cCCCCceEEEEEecChHHHHHHH--------HhhhcCCCChHHHHHHHHhcCChhH---HHHHHHHHHHHHHHHHHHHHH
Q 011570 280 MGFPGFRVGIIYSYNDQVVSCAR--------KMSSFGLVSSQTQHLIATMLSDDQF---VEKFIAESAKRIAERHKAFTW 348 (483)
Q Consensus 280 ~g~~GlRiG~li~~~~~l~~~~~--------~~~~~~~~s~~~q~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~l~~ 348 (483)
++++|+|+||++++...+..... ........+...|.++..++.+..+ ..++++..+++++++++.+.+
T Consensus 245 ~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~ 324 (394)
T d2ay1a_ 245 FGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAG 324 (394)
T ss_dssp TTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996544332211 1122344566788888888877543 345667778899999999999
Q ss_pred hhhcCC----ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHH
Q 011570 349 GLSQVG----IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTME 424 (483)
Q Consensus 349 ~L~~~g----i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~ 424 (483)
.|+++| |.+..+++|||+|+.++. +++++|++++||.+.||. ||++++.++++++
T Consensus 325 ~L~~~~~~~~~~~~~~~~G~F~~~~ls~-----------~~~~~L~~~~~V~~~~g~----------Ri~~a~l~~~~i~ 383 (394)
T d2ay1a_ 325 ELRDLSGSDRFGFVAEHRGMFSRLGATP-----------EQVKRIKEEFGIYMVGDS----------RINIAGLNDNTIP 383 (394)
T ss_dssp HHHHHHTSSTTTHHHHCCSSEEECCCCH-----------HHHHHHHHHHCEECCTTC----------EEEGGGCCTTTHH
T ss_pred HHHHhCCCCceeeECCCceeEEecCcCH-----------HHHHHHHHhCCEEecCCC----------EEEecCCCHHHHH
Confidence 998863 567789999999998753 567889999999999873 9999888889999
Q ss_pred HHHHHHHHH
Q 011570 425 IALSRITSF 433 (483)
Q Consensus 425 ~~l~~L~~~ 433 (483)
.+.++|.++
T Consensus 384 ~l~~ai~~v 392 (394)
T d2ay1a_ 384 ILARAIIEV 392 (394)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988888764
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.7e-39 Score=326.75 Aligned_cols=290 Identities=15% Similarity=0.179 Sum_probs=221.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh--------cCCCCeEEEeCCCCcChHHHHhhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL--------ADPGDAFLVPTPYYPGFDRDLRWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l--------~~~gd~Vlv~~P~y~~~~~~~~~~~G~~ 167 (483)
.++|+++|++++...-+ ...+..+|++|+|++++|+.++.+| ++|||+|+++.|+|+.|...++.. +.+
T Consensus 102 ~~~L~~~i~~lh~~~gn--a~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~-~~~ 178 (425)
T d2hoxa1 102 SFELEKTIKELHEVVGN--AAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF-DKK 178 (425)
T ss_dssp CHHHHHHHHHHHHHHTC--BCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS-CBT
T ss_pred CHHHHHHHHHHHhhhCC--CCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc-CCC
Confidence 38999999998875433 3345667999999999999999999 578999999999999999888875 665
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
... |.+|.+.+++++. ++++++++||||||||.+.. +..+++.+|.||+|.+..|.
T Consensus 179 ~~~--------~~~D~~~~~~~~~------~~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~ 234 (425)
T d2hoxa1 179 GYV--------WAGNAANYVNVSN------PEQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT 234 (425)
T ss_dssp TEE--------EEEEGGGGTTCSC------GGGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS
T ss_pred CCc--------cCCCHHHHHhhCC------CCceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc
Confidence 433 4566777766554 37899999999999998742 33468999999999653333
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCCh
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~ 325 (483)
. +.. ..+++|+++||||.||++|+|+||++++++.+.+.+.....+ ..++.++|.++..++...
T Consensus 235 ~------~~~--------~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~ 300 (425)
T d2hoxa1 235 P------IKY--------KADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEV 300 (425)
T ss_dssp C------CCS--------CBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHH
T ss_pred c------hhh--------hcCCeEEEEeCHHhccCcchheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhcc
Confidence 2 111 347889999999999999999999999888887776655443 458899999888877542
Q ss_pred h-H-------HHHHHHHHHHHHHHHHHHHHHhhhcCCc-e--------------eecCCceEEEeeecCchhhccChHHH
Q 011570 326 Q-F-------VEKFIAESAKRIAERHKAFTWGLSQVGI-G--------------CLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 326 ~-~-------~~~~~~~~~~~l~~~~~~l~~~L~~~gi-~--------------~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
. + .+++.+..++.++++++.+.+.|.+.+. . ...+..+.|+|+++....
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~-------- 372 (425)
T d2hoxa1 301 VAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEE-------- 372 (425)
T ss_dssp HHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCCh--------
Confidence 1 1 1235667788889999999999987642 1 112333457888876421
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
.+++..+++++||.++||+.|+. +++|+||+++ .++|+++++++||+++++.
T Consensus 373 ~~~~~~lL~e~gI~v~pGs~FG~-~~~yvRisl~-~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 373 DKDCYQTFQNGRINTQNGVGFEA-SSRYVRLSLI-KTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp GCSHHHHHHHTTEECEEGGGGTS-CTTEEEEECS-SCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCEEEEechhcCC-CCCEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 13455677789999999999974 5689999997 5889999999999998864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=2.2e-28 Score=242.43 Aligned_cols=303 Identities=12% Similarity=0.048 Sum_probs=203.0
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEe-CCCCcChHHHHhhhcCcEEEEee
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVP-TPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~-~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
.+.+++++..+++++. ...+++++|+|+++++..++.+|..++|.|+++ .|+|+.+...++.. |++++..
T Consensus 50 ~~~~~l~~~~~~~~~~-------~~~e~~~~~~~~~~a~~~~l~al~~~~~vi~~~~~~~~~~~~~~~~l~-g~~~v~~- 120 (366)
T d2aeua1 50 YFAEKVNEYGLKHLGG-------DENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGHPSIERSCKIV-NAKYFES- 120 (366)
T ss_dssp HHHHHHHHHHHHHHTC-------CTTEEEEEESSHHHHHHHHHHHHCCSEEEEECSSSSCCTHHHHHHHHT-TCEEEEE-
T ss_pred hhHHHHHHHHHHHccC-------CCccEEEEeCCHHHHHHHHHHHhCCCCEEEEecCCCcchhHHHHHHhc-CCeEECC-
Confidence 3567888888888762 245789999999999999999986555555554 68999999999886 9986532
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
+ |++++++++.+ ++|+|++++|+||+ +++.+++++|+++|++||+++|+||+|+...|.. ...
T Consensus 121 -~-------d~e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~-~~~ 183 (366)
T d2aeua1 121 -D-------KVGEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRLL-FNQ 183 (366)
T ss_dssp -S-------CHHHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH-TTC
T ss_pred -C-------CHHHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCcccccccc-ccC
Confidence 1 78899888764 89999999999985 4688899999999999999999999998766654 222
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCCh--hHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDD--QFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~--~~~ 328 (483)
.+.... +..+++.|+||.+ +|+|+||++++ +.+.+.+..... + ..++++.|.++...++.. ..+
T Consensus 184 ~~~~~~---------~~di~~~S~sK~~--~g~~~G~i~~~-~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~ 251 (366)
T d2aeua1 184 PPALKL---------GADLVVTSTDKLM--EGPRGGLLAGK-KELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERI 251 (366)
T ss_dssp CCHHHH---------TCSEEEEETTSSS--SSCSCEEEEEE-HHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHH
T ss_pred CCHhhc---------CceEEEecccccc--cccceeEEEec-HHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHH
Confidence 232222 3347788999976 68999999994 556665554432 2 346777887776665421 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh---cCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLS---QVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC 405 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~---~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~ 405 (483)
+++.+..++......+.+..... ........+.+.+|+|......... ......+++..|++++||.+.||..|.
T Consensus 252 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~Ll~~~gV~~ip~~~~p- 329 (366)
T d2aeua1 252 RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-NIKKLIEIGFNLLKNYGIITITVAGMP- 329 (366)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-HHHHHHHHHHHHHHHHCEECSTTSSSC-
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-cccCHHHHHHHHHHhCCEEEEECCCCC-
Confidence 22222222111112222222222 2223344455667887776543221 123456889999999999999998884
Q ss_pred CCCCEEEEEeccCCHHH--HHHHHHHHHHHHHH
Q 011570 406 PNPGWFRVCFANMDDRT--MEIALSRITSFMLK 436 (483)
Q Consensus 406 ~~~~~iRis~~~~~~e~--l~~~l~~L~~~l~~ 436 (483)
.+++++||+++..+.++ .+.++++|.+.++.
T Consensus 330 ~~~~~lRis~~~~~~~~i~~d~l~~ai~~~lK~ 362 (366)
T d2aeua1 330 GASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 362 (366)
T ss_dssp SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccchhhCCHHHHHHHHHHHHHH
Confidence 46778999997433222 34555555554443
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.95 E-value=2.7e-26 Score=226.71 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=201.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
...+++.+|++++ .+++++|+|+++++..++.++++|||.|+++.++|.+....+... |++++.+|+++
T Consensus 49 ~~~~~~~~A~~~g----------~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~-g~~v~~v~~~~ 117 (364)
T d2e7ja1 49 HDFIHNQLPKFLG----------CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERA-GLNIALVPKTD 117 (364)
T ss_dssp HHHHHTHHHHHTT----------SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHT-TCEEEEECCCC
T ss_pred HHHHHHHHHHHhC----------cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhc-cceEEEeeecc
Confidence 3557888888865 478999999999999999999999999999999998888878775 99999999988
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
.++|.+|++.+++++++... ..++++|++++|+||||.+.+ +++|+++|++||+++|+|++|+...+. .+.
T Consensus 118 ~~~~~i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~-----~~~ 188 (364)
T d2e7ja1 118 YPDYAITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP-----VSL 188 (364)
T ss_dssp TTTCCCCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC-----CCH
T ss_pred ccccccCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhhh-----hcc
Confidence 78899999999999987432 235788999999999999999 788999999999999999999742211 233
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-------c--CCCChHHHHHHHHhcCChh
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS-------F--GLVSSQTQHLIATMLSDDQ 326 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~-------~--~~~s~~~q~~~~~~l~~~~ 326 (483)
..+ +..+++.|++|.+|.+| ++||++++++.+......... + .........++.+.+ .
T Consensus 189 ~~~---------g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ 255 (364)
T d2e7ja1 189 KEI---------GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF---P 255 (364)
T ss_dssp HHH---------TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHH---H
T ss_pred ccc---------ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHH---H
Confidence 333 33477889999998666 799999965433222111111 1 111122222222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec--CCceEEEeeecCchhh--ccChHHHHHHHHHHHHhcCeEee-CCC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK--SNAGLFLWMDLHHLLK--EQTYEAEMALWRVIINEVKLNVS-PGS 401 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~--~~~g~f~~~~l~~~~~--~~~~~~~~~~~~~Ll~~~gV~v~-pg~ 401 (483)
...++++...+.+ +++.++.+.|.+.|+.+.. +......++..+.... ..... ...+....+...|+... +|
T Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~g- 332 (364)
T d2e7ja1 256 HVRERIKRWDEEV-EKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKAKG-GRFFLYRELKSRKIHGIKPG- 332 (364)
T ss_dssp HHHHHGGGHHHHH-HHHHHHHHHHHHTTCEEESSSSCCSSEEEEECHHHHHHHHHSSS-GGGHHHHHHHHTTEECSCTT-
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHcCCeecCCCCCCcceEEEeccchHHHHHHhhc-cchHHHHHHHhcCCceecCC-
Confidence 2222333333333 4456778888888876642 2222234444432110 00000 11223334455576532 22
Q ss_pred CCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHHh
Q 011570 402 SFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 402 ~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~~ 437 (483)
....+|++.-..+++++++++++|++++++.
T Consensus 333 -----~~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 333 -----LTRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp -----CCSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CcceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 2346777753368999999999999998874
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.3e-23 Score=209.75 Aligned_cols=297 Identities=16% Similarity=0.193 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh----cCCCCeEEEeCCCCcChHHHHhh--hcCcEEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL----ADPGDAFLVPTPYYPGFDRDLRW--RTGVQLVP 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l----~~~gd~Vlv~~P~y~~~~~~~~~--~~G~~~~~ 170 (483)
.++|+.+|++++ +++++|++|+|++++++.++.++ .++||+|++.++.|+.+....+. ..|+++..
T Consensus 51 ~~~R~~iA~~lg--------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~ 122 (391)
T d1p3wa_ 51 DIARNQIADLVG--------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 122 (391)
T ss_dssp HHHHHHHHHHHT--------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcC--------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEE
Confidence 467888888887 68899999999999999888765 48999999999999887654432 14999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+|.+.. +.+|++.+++++.+ +|++|++++|+||||.+++ +++|+++|+++|+++++|.+|.....
T Consensus 123 v~~~~~--~~~d~~~~~~~i~~------~T~lv~is~~~n~tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~---- 187 (391)
T d1p3wa_ 123 LAPQRN--GIIDLKELEAAMRD------DTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---- 187 (391)
T ss_dssp ECCCTT--SCCCHHHHHHHCCT------TEEEEECCSBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTB----
T ss_pred eCCCCC--CeEcHHHHHHhCCC------CcEEEEEECCCCCCeeECC---HHHHHHHhccCCcEEEEeeccccCCc----
Confidence 998753 46899999999864 8999999999999999999 77888999999999999999974211
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--------hhhcCCCChHHHHHHHHhc
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--------MSSFGLVSSQTQHLIATML 322 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--------~~~~~~~s~~~q~~~~~~l 322 (483)
+ .++.. .+..+++.|.+|.+|.+| +|+++..++.+...... ....+..+.....++...+
T Consensus 188 ~-~d~~~---------~~~D~~~~s~~k~~g~~g--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~ 255 (391)
T d1p3wa_ 188 P-IDLSQ---------LKVDLMSFSGHKIYGPKG--IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY 255 (391)
T ss_dssp C-CCTTT---------SCCSEEEEESTTTTSCSS--CEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH
T ss_pred c-ccchh---------ccccccccccccccCCCc--eEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh
Confidence 1 22221 234467789999998777 57777744322111000 0011223333333333322
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceee--cCC-ceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee
Q 011570 323 SDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCL--KSN-AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS 398 (483)
Q Consensus 323 ~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~--~~~-~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 398 (483)
. ...+......+++++.+..+.+.|...+ ..+. .+. ....+.+.++.. . ...+...| .++.|+
T Consensus 256 ~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~l---~~i~v~ 322 (391)
T d1p3wa_ 256 R---IAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYV-E------GESLIMAL---KDLAVS 322 (391)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHTTTTSTTEEECSCTTTSCTTEEEEEETTS-C------HHHHHHHT---TTEECB
T ss_pred h---HHHHHhhHHHHHHHHHHHHHHHHHHhhcCeeecccccccCceEEEEEeCCC-C------hHHHHHHh---CCCEEE
Confidence 2 1122344445667777788888888773 2221 111 112222333321 1 11333332 478888
Q ss_pred CCCCCCCCC-----------------CCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhcc
Q 011570 399 PGSSFHCPN-----------------PGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAK 441 (483)
Q Consensus 399 pg~~f~~~~-----------------~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~ 441 (483)
.|..|.... .++||||++. .|+++++.++++|++++++.++..
T Consensus 323 ~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~ 383 (391)
T d1p3wa_ 323 SGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLS 383 (391)
T ss_dssp CCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 776543211 2579999976 489999999999999999988763
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.6e-22 Score=198.08 Aligned_cols=294 Identities=11% Similarity=0.074 Sum_probs=209.8
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
.-+.+|++.+|+|++ .+..++.+++..+...++.++..++|.|++....|..+...++.. +.+++.++.
T Consensus 83 ~~~~~lE~~LA~~~g----------~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~-~~~~~~~~h 151 (383)
T d1bs0a_ 83 VVHQALEEELAEWLG----------YSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS-PSQLRRFAH 151 (383)
T ss_dssp HHHHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTS-SSEEEEECT
T ss_pred hHHHHHHHHHHHhcC----------CCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccC-CCcceEecc
Confidence 335788999999876 468888888899999999999999999999999999998888775 888888774
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|++++++.+... .++.++|+++.+.+++|.+.+ +.+|+++|++||+++++||+|+..+++. .. .
T Consensus 152 -------nd~~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~~~livDeah~~gv~G~-~g-~ 216 (383)
T d1bs0a_ 152 -------NDVTHLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGE-QG-R 216 (383)
T ss_dssp -------TCHHHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSG-GG-C
T ss_pred -------hHHHHHHHHhccc---CCCceEEEecCCCCCCCcccc---hhHHHHHHHhcCcEEEeecceeeeecCC-cc-c
Confidence 4788898887642 335677888899999999999 7777888889999999999999776664 22 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc--C-CCChHHHHHHHHhcCChhHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF--G-LVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~--~-~~s~~~q~~~~~~l~~~~~~~ 329 (483)
....... ....+++.|+||.+|.+| |++.+ +..+.+.++... .+ . ..+++...++.+.+.-.. .
T Consensus 217 G~~~~~~------~~~~~~~~t~~ka~g~~G---g~v~~-~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~--~ 284 (383)
T d1bs0a_ 217 GSCWLQK------VKPELLVVTFGKGFGVSG---AAVLC-SSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR--S 284 (383)
T ss_dssp CHHHHTT------CCCSEEEEESSSTTSSCC---EEEEE-CHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH--S
T ss_pred chHHHcC------Cccccccccccccccccc---ccccc-chhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHH--h
Confidence 3333322 244456789999999888 99988 556666665432 22 2 223332223222221100 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NP 408 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~ 408 (483)
......+.++.++..++.+.|.+.|+.+.+..+. ++.+.+... ....++.+.|++ +||.+.+......+ +.
T Consensus 285 ~~~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~s~-Ii~v~~g~~------~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g~ 356 (383)
T d1bs0a_ 285 DEGDARREKLAALITRFRAGVQDLPFTLADSCSA-IQPLIVGDN------SRALQLAEKLRQ-QGCWVTAIRPPTVPAGT 356 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEECSCCSS-BCCEEEESH------HHHHHHHHHHHH-TTEECCEECTTSSCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCccCCCCCC-EEEEEECCH------HHHHHHHHHHHH-CCceEEEEcCCCCCCCC
Confidence 1234556677888899999999999877665543 444444321 223467777775 59999876544332 34
Q ss_pred CEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 409 GWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 409 ~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
..+||++.. .++|+++.+++.|..+
T Consensus 357 ~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 357 ARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp EEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 579999976 6999999999998753
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.91 E-value=1e-23 Score=209.77 Aligned_cols=291 Identities=17% Similarity=0.229 Sum_probs=190.1
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEe
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPV 171 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v 171 (483)
..++|+.+|++++ +++++|++|+|+++++++++.++ .++||.|+++.+.|+.....+.. ..|++++.+
T Consensus 52 ~~~~r~~la~~~~--------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v 123 (381)
T d1elua_ 52 IAQLRQALAETFN--------VDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFF 123 (381)
T ss_dssp HHHHHHHHHHHTT--------SCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHhC--------CCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccc
Confidence 3467777888876 57899999999999999999987 68999999999999865543322 249999999
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh----cCcEEEEccccccCccC
Q 011570 172 VCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE----KNIHLVCDEIYAATVFT 247 (483)
Q Consensus 172 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~----~~~~iI~Deay~~~~~~ 247 (483)
|.+.......+.+.+++++. ++++++++++|+||||.+++. ++|.++|++ +++++++|.+++. +
T Consensus 124 ~~~~~~~~~~~~~~l~~~i~------~~t~~v~i~~~~n~tG~~~~~---~~I~~l~~~~~~~~~~~~~vD~~~~~---g 191 (381)
T d1elua_ 124 PVAATLNQGDAAAVLANHLG------PKTRLVILSHLLWNTGQVLPL---AEIMAVCRRHQGNYPVRVLVDGAQSA---G 191 (381)
T ss_dssp CCGGGSSSSCHHHHHHTTCC------TTEEEEEEESBCTTTCCBCCH---HHHHHHHHHCCSSSCCEEEEECTTTB---T
T ss_pred ccccccccchHHHHHHhhhc------ccccccccccccccccccchh---hHHHHHHhhccccccccccccccccc---c
Confidence 87654322223444544443 489999999999999999995 455556655 4799999999873 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-h---------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-M---------------------S 305 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-~---------------------~ 305 (483)
. .+ ..+. ..+..+++.|++|.++ ...++|+++..++... .+.. . .
T Consensus 192 ~-~~-~~~~---------~~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 258 (381)
T d1elua_ 192 S-LP-LDFS---------RLEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLG-EINPTYVGWRSITYGAKGEPTGWAEGGK 258 (381)
T ss_dssp T-BC-CCTT---------TSCCSEEEEESSSTTC-CCTTCEEEEECTTTGG-GCCCCSCCTTTEEECTTSCEEEECSGGG
T ss_pred c-cc-cccc---------cccccccccccccccc-ccchhhHHHhhHHHHH-hcCccccccccccccccccccccccccc
Confidence 2 11 2221 1245577889999986 4456788888544322 1110 0 0
Q ss_pred --hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec---CCceEEEeeecCchhhccCh
Q 011570 306 --SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK---SNAGLFLWMDLHHLLKEQTY 379 (483)
Q Consensus 306 --~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~---~~~g~f~~~~l~~~~~~~~~ 379 (483)
..++.+.....++.+++..... ....+...++..++++++.+.|+++ |++++. +.++ ++++.++....
T Consensus 259 ~~~~gt~~~~~~~~~~~a~~~~~~-~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~vsf~~~~~~~---- 332 (381)
T d1elua_ 259 RFEVATSAYPQYAGLLAALQLHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAG-LVSFTVDSPLG---- 332 (381)
T ss_dssp GGCCSCCCHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSS-EEEEEECSSSC----
T ss_pred ccccccccchhhhhhhhhhhhHHH-hcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCcccc-EEEEEcCCCCC----
Confidence 0122333333333333322110 0012333456677788899999887 777653 4455 66666654322
Q ss_pred HHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 380 EAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 380 ~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
...+.+. |+++||.|+.. ..++++|+|++. .++++++.++++|+++
T Consensus 333 --~~~i~~~-L~~~gi~v~~~-----~~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 333 --HRAIVQK-LEEQRIYLRTI-----ADPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp --HHHHHHH-HHHTTEECEEE-----TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred --HHHHHHH-HHhCCcEEEec-----CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1244444 55679988642 236799999975 4899999999999763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.91 E-value=3.7e-22 Score=197.29 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~ 173 (483)
+.+|++.+|+|++ .+..++.+.+..+...++.+| ..+||.|+.+.-.|......++.. +++++.++.
T Consensus 92 h~~LE~~lA~~~g----------~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls-~a~~~~f~H 160 (396)
T d2bwna1 92 HRRLEAEIAGLHQ----------KEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN-AGPKRIFRH 160 (396)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS-CCCEEEECT
T ss_pred HHHHHHHHHHHhC----------CCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhcc-ccCceEeec
Confidence 5788999999976 356666677777777777776 478999999999999888888875 899888774
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
+ |++++++.++.... .+.+.|++..-.+.+|.+.| +.+|++++++||.++++||+|+..+++. .. .
T Consensus 161 n-------d~~~l~~l~~~~~~--~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~-~G-~ 226 (396)
T d2bwna1 161 N-------DVAHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGP-RG-A 226 (396)
T ss_dssp T-------CHHHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSST-TS-C
T ss_pred c-------hHHHhhhHHhhhcc--cCceeEEEEeeccCcccccc---cHhHHHHhhhhcceeeeccceeeeeecc-cc-c
Confidence 3 67778777764322 24466777777899999999 8888889999999999999999887765 22 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-h--cCCCChHHHH-HHHH---hcCChh
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-S--FGLVSSQTQH-LIAT---MLSDDQ 326 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~--~~~~s~~~q~-~~~~---~l~~~~ 326 (483)
.+...... .....++++||||+||..| |++.+ ++.+++.+.... + |....++.+. ++.+ ++....
T Consensus 227 G~~~~~~~----~~~~di~~gTlsKa~g~~G---g~v~~-~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~ 298 (396)
T d2bwna1 227 GVAERDGL----MHRIDIFNGTLAKAYGVFG---GYIAA-SARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE 298 (396)
T ss_dssp CHHHHHTC----GGGCSEEEEESSSTTCSCC---EEEEE-CHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHH
T ss_pred cchhhcCC----ceeeeeeeecccccccccc---cccch-hHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcch
Confidence 33332210 2345688999999999888 99888 566666665433 2 2222233333 2222 233322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC
Q 011570 327 FVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP 406 (483)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~ 406 (483)
..+.+..+..+.+++.+.|.+.|+.+....+ ..+.+.+... .....+++.|++++||.+.+......+
T Consensus 299 -----~~~~r~~l~~~~~~~~~~l~~~g~~~~~~~s-pIvpv~ig~~------~~~~~~a~~lL~e~Gi~v~~i~~PtVp 366 (396)
T d2bwna1 299 -----GQKLRDAQQMHAKVLKMRLKALGMPIIDHGS-HIVPVVIGDP------VHTKAVSDMLLSDYGVYVQPINFPTVP 366 (396)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTCCBCCCSS-SCEEEECCCH------HHHHHHHHHHHHHHCEECCEECTTTSC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC-CEEEEEeCCH------HHHHHHHHHHHHhCCEEEEEECCCcCC
Confidence 2445667777888888989888888765444 3555555432 224477888898889998876654433
Q ss_pred -CCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 407 -NPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 407 -~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
+...+||++.. .++++++.++++|++++
T Consensus 367 ~g~~rlRi~lsa~ht~edId~l~~~L~~iw 396 (396)
T d2bwna1 367 RGTERLRFTPSPVHDLKQIDGLVHAMDLLW 396 (396)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHHC
T ss_pred CCCeeEEEEeCccCCHHHHHHHHHHHHHhC
Confidence 34679999966 69999999999998763
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6e-22 Score=197.58 Aligned_cols=300 Identities=15% Similarity=0.124 Sum_probs=215.7
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDS 175 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~ 175 (483)
+.+|.+.+|+|++ .+.+++++++.++...++.++++++|.|++..-+|..+...+... +.++..++.
T Consensus 92 ~~~lE~~lA~~~g----------~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~-~a~~~~~~~-- 158 (401)
T d1fc4a_ 92 HKELEQKLAAFLG----------MEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLC-KAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTS-CSEEEEECT--
T ss_pred HHHHHHHHHHhhc----------CCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHcccccc-CceEEEEcC--
Confidence 5688888888875 578999999999999999999999999999999999988888775 888877763
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchH
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSI 255 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~ 255 (483)
.|.+++++.++.....+....+|++.+..+..|.+.+ +.++.++|++||+++|+||+++..+++. .. ...
T Consensus 159 -----~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~-~G-~G~ 228 (401)
T d1fc4a_ 159 -----NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGE-NG-RGS 228 (401)
T ss_dssp -----TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSST-TS-CCH
T ss_pred -----CChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcCcEEEehhhhccccccC-CC-Ccc
Confidence 4678888887776665555566666666778898888 8888888999999999999999877765 32 223
Q ss_pred HHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-hc---CCCChHHHHHHHHhcCChhHHHHH
Q 011570 256 AEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-SF---GLVSSQTQHLIATMLSDDQFVEKF 331 (483)
Q Consensus 256 ~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-~~---~~~s~~~q~~~~~~l~~~~~~~~~ 331 (483)
...... ..+..++++|+||.+| |...|++.+ ++.+.+.++... .+ ...++....++...+... ..
T Consensus 229 ~~~~~~----~~~~dii~~tl~Ka~g--g~~Gg~v~g-~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~----~~ 297 (401)
T d1fc4a_ 229 HEYCDV----MGRVDIITGTLGKALG--GASGGYTAA-RKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV----EA 297 (401)
T ss_dssp HHHTTC----TTCCSEEEEESSSTTC--SSSCEEEEE-CHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH----HT
T ss_pred chhccC----CCCCeEEEeecccccc--cCCcccccC-CHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhccc----cc
Confidence 333221 2345678999999984 333488888 677776665332 22 234444433333333211 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCC-CCCE
Q 011570 332 IAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCP-NPGW 410 (483)
Q Consensus 332 ~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~-~~~~ 410 (483)
.++.++++.++..++.+.+...|+.+..+.+. .+.+.+.+. ....++++.|++ +||.+.+-.....+ +...
T Consensus 298 ~~~~~~~l~~~~~~~~~~l~~~g~~~~~~~~p-Iv~v~~~~~------~~a~~~~~~L~~-~Gi~v~~i~~PtVp~g~~~ 369 (401)
T d1fc4a_ 298 GSELRDRLWANARQFREQMSAAGFTLAGADHA-IIPVMLGDA------VVAQKFARELQK-EGIYVTGFFYPVVPKGQAR 369 (401)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCBCCSSSS-EEEEEEECH------HHHHHHHHHHHH-TTEECCEECTTSSCTTCEE
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCccCCCCCC-EEEEEECCH------HHHHHHHHHHHH-CCceEEeECCCCCCCCCce
Confidence 35567788888899999999988887766654 444545431 223467788775 59998775443322 3456
Q ss_pred EEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 411 FRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 411 iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+|+++.. .|+|+++++++.|+++.++.
T Consensus 370 lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 370 IRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999965 69999999999999998775
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.1e-22 Score=197.61 Aligned_cols=334 Identities=13% Similarity=0.102 Sum_probs=207.1
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCC
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGG 127 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G 127 (483)
+|||....-.-|.+.+.+++.+... ....|++.+...+|++.+|++++ .+++++++|
T Consensus 1 ~~~~~~~~~t~p~p~v~~A~~~a~~-------------g~~~yg~~p~~~~le~~lA~~~G----------~~~~~~~~s 57 (343)
T d1m6sa_ 1 MIDLRSDTVTKPTEEMRKAMAQAEV-------------GDDVYGEDPTINELERLAAETFG----------KEAALFVPS 57 (343)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCC-------------CCGGGTCCHHHHHHHHHHHHHTT----------CSEEEEESC
T ss_pred CcccccccCCCCCHHHHHHHHhhhc-------------CCcccCCCHHHHHHHHHHHHHHC----------CCeEEEeCC
Confidence 3566555433344456666654211 12357666667899999999876 357889999
Q ss_pred hhHHHHHHHHHhcCCCCeEEEeCCCCcChHH---HHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEE-
Q 011570 128 ATGAHETVAFCLADPGDAFLVPTPYYPGFDR---DLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGV- 203 (483)
Q Consensus 128 ~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~---~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i- 203 (483)
+++++..++.++..+||.+++..+.+..+.. .... .+..+..++.+ .+..|++.++..+.....+..++..+
T Consensus 58 Gt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ 133 (343)
T d1m6sa_ 58 GTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVL-SGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIA 133 (343)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHH-TCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHHHHHHHhccCCceeccccccceeeeccccccc-ccceeeccccc---cCccCHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999999999998764433 2222 25666666644 34578999998886543333455555
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+.+.++|++|.+.+.+++.+|+++|+++|+++++|++|..+.... .. ........ .....+ ++|..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~-~~-~~~~~~~~-------~~~~~~--~~~~~~~~ 202 (343)
T d1m6sa_ 134 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIA-SG-VPVKEYAG-------YADSVM--FCLSKGLC 202 (343)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHH-HC-CCHHHHHH-------TCSEEE--EESSSTTC
T ss_pred cccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccc-cc-cchhhhcc-------cccccc--cccccccc
Confidence 444568999999999999999999999999999999997643322 11 12222211 122222 33333446
Q ss_pred CceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC
Q 011570 284 GFRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS 360 (483)
Q Consensus 284 GlRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~ 360 (483)
|.+.|+++...+ .......... . ...+.....+++....... .........++...+.+.+.++ +.....+
T Consensus 203 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (343)
T d1m6sa_ 203 APVGSVVVGDRD-FIERARKARKMLGGGMRQAGVLAAAGIIALTK-----MVDRLKEDHENARFLALKLKEIGYSVNPED 276 (343)
T ss_dssp CSSCEEEEECHH-HHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH-----SSTTHHHHHHHHHHHHHHHHHHTCBCCGGG
T ss_pred ccccccccccHH-HHhhhHhhCcccccccchhHHHHHhhhhhhhh-----hHHHHHHHHHHHHHhhhHHHHhccCccCCC
Confidence 666788888444 3333333222 2 2222222222222111110 0111122233334444444444 3334445
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.+++++|++++.... ...++++.|.+ +||.+.|. +++++||+++. .++|++++++++|++++++.
T Consensus 277 ~~~~~v~~~~~~~~~-----~a~~l~~~L~~-~Gi~v~~~------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 277 VKTNMVILRTDNLKV-----NAHGFIEALRN-SGVLANAV------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp CCSSEEEEECTTSSS-----CHHHHHHHHHH-HTEECEEE------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEeCCCcc-----cHHHHHHHHHH-CCCEEecC------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 556799998874211 12367777775 59999874 25689999965 59999999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=1.1e-20 Score=181.46 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=189.1
Q ss_pred ccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh-cCc
Q 011570 88 AIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR-TGV 166 (483)
Q Consensus 88 ~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~-~G~ 166 (483)
..|++....+++|+.||++++ .++++|++|+|+++++..++..+..+++.+++..+.+..+....... .+.
T Consensus 29 ~~y~~~~~~~~lr~~ia~~~g--------~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (340)
T d1svva_ 29 AGYGQDSHCAKAARLIGELLE--------RPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGH 100 (340)
T ss_dssp CSTTCSHHHHHHHHHHHHHHT--------CTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhC--------CCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccce
Confidence 457666667889999999987 46789999999999999999999999999999998876543322111 234
Q ss_pred EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCcc
Q 011570 167 QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVF 246 (483)
Q Consensus 167 ~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~ 246 (483)
....+.... ...+.+..................++++.+.|++|.+.+.+++..+...|.++|.++++|++|.....
T Consensus 101 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~ 177 (340)
T d1svva_ 101 KVVTAPCPD---GKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASAL 177 (340)
T ss_dssp CEEEECCTT---SCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHH
T ss_pred eeeeccccc---ccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeee
Confidence 443433322 12344444444433222222344555555556678888999999999999999999999999965433
Q ss_pred CCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH--hhhc-CCCChHHHHHHHHhcC
Q 011570 247 TKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK--MSSF-GLVSSQTQHLIATMLS 323 (483)
Q Consensus 247 ~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~--~~~~-~~~s~~~q~~~~~~l~ 323 (483)
.......+...... ...+...+.+|.. .+.+.++.............. .... .........++..++.
T Consensus 178 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~ 248 (340)
T d1svva_ 178 SSPVNDLTLADIAR-------LTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMK 248 (340)
T ss_dssp TSTTCCCCHHHHHH-------HCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTS
T ss_pred cccccccccccccc-------cceeeecCCcccc--ccccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhh
Confidence 32122222222211 2233444555544 444456666533322212111 1111 2122333444445555
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCC
Q 011570 324 DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSF 403 (483)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f 403 (483)
...+ ....+....++.++...|...|+++..|..++++++.++. +...+|+++..+...+..
T Consensus 249 ~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~v~~~~~~-----------~~~~~l~~~~~~~~~~~~-- 310 (340)
T d1svva_ 249 DNLF-----FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILEN-----------TMIAELNNDFDMYTVEPL-- 310 (340)
T ss_dssp TTHH-----HHHHHHHHHHHHHHHHHHHHTTCCBSSCCSSSEECBEEEH-----------HHHHHHTTTEECEEEEEE--
T ss_pred hhHH-----HHHHHHHHHHHhhhHHHHhcCCCeeecCCCceEEEEeCCH-----------HHHHHHHHhhhhhccccc--
Confidence 5443 3334456677788889999999998877767789888763 344555544222222221
Q ss_pred CCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 404 HCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 404 ~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
..+++++|++++. +|++++++++++|++
T Consensus 311 -~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 311 -KDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp -TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 1246789999876 699999999999986
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.1e-19 Score=181.79 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=201.5
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcChHHHH----hhhcCcE
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGFDRDL----RWRTGVQ 167 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~ 167 (483)
..+.|+.+|++++. ..+++|++|+|+|++++.++.+ ...+||.|++..-.|+.....+ +.. |++
T Consensus 68 ~e~~R~~ia~~l~~-------~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~-g~~ 139 (405)
T d1jf9a_ 68 MENVRKRASLFINA-------RSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARV-GAE 139 (405)
T ss_dssp HHHHHHHHHHHTTC-------SCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-TCE
T ss_pred HHHHHHHHHHHcCC-------CCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHc-CcE
Confidence 45678888888762 2468999999999999988875 3589999999999998755443 343 999
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+..+|++.++ .+|++.+++++. ++|++|+++..+|.||.++| +++|.++|+++|+++++|.+++. +
T Consensus 140 v~~~~~~~~g--~~~~~~~~~~i~------~~t~lv~~~~v~~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~---g 205 (405)
T d1jf9a_ 140 LRVIPLNPDG--TLQLETLPTLFD------EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAV---M 205 (405)
T ss_dssp EEEECBCTTS--CBCGGGHHHHCC------TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTT---T
T ss_pred EEEECCCCCC--cCCHHHHHHhcc------CCcEEEEEecCCCcccccCc---hHHhhhHHHHcCCeeecccceec---c
Confidence 9999988654 688899988775 48999999999999999999 88889999999999999999863 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh----------------------h
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM----------------------S 305 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~----------------------~ 305 (483)
.-..++..+ +..+++.|+.|.+|-+| +|+++.. +.+.+..... .
T Consensus 206 --~~~id~~~~---------~~D~~~~s~hK~~Gp~G--~g~l~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (405)
T d1jf9a_ 206 --HHPVDVQAL---------DCDFYVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPW 271 (405)
T ss_dssp --TSCCCHHHH---------TCSEEEEEGGGTTSCSS--CEEEEEC-HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTG
T ss_pred --ccccchhhc---------CCceeeccccccccCCC--ceeeeec-hhhhcccCcccccccccCccccccccccccchh
Confidence 122344444 34477889999988666 7888884 4332221100 0
Q ss_pred --hcCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-ceeecC--CceEEEeeecCchhhccChH
Q 011570 306 --SFGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG-IGCLKS--NAGLFLWMDLHHLLKEQTYE 380 (483)
Q Consensus 306 --~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g-i~~~~~--~~g~f~~~~l~~~~~~~~~~ 380 (483)
..++.+..+..++..+++-.. +.-.+...++.....+.+.+.++..+ +....+ .++ .+.+.++.. .
T Consensus 272 r~e~GT~~~~~~~~l~~al~~~~--~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~-ivsf~~~~~-~----- 342 (405)
T d1jf9a_ 272 RFEAGTPNTGGIIGLGAALEYVS--ALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG-VIAFNLGKH-H----- 342 (405)
T ss_dssp GGCCSSCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS-EEEEEETTC-C-----
T ss_pred hhcCCCCcHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCc-EEEEEcCCC-C-----
Confidence 012344444444444443111 11123344445555566777777764 333332 233 444666532 1
Q ss_pred HHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 381 AEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 381 ~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..++.. .++++||.++.|+.|.. ..++++|||++. .+++|++.++++|+++.+-
T Consensus 343 -~~~~~~-~L~~~gI~v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 343 -AYDVGS-FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp -HHHHHH-HHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH-HHHHCCcEEEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 113344 45678999998876532 236789999987 5999999999999987764
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.84 E-value=4.1e-19 Score=179.56 Aligned_cols=327 Identities=14% Similarity=0.177 Sum_probs=212.1
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEE
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQL 168 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~ 168 (483)
.|+..+...+|.+.+|++++ .+.++++++++.|+.+++.++++|||.|+.....+. ....+... |+..
T Consensus 70 ~Y~~dpt~~~lE~~~a~l~G----------~e~al~~~SGt~An~~a~~~l~~~Gd~Vi~~~~f~~-~~~~i~~~-g~~~ 137 (456)
T d1c7ga_ 70 AYAGSENFYHLEKTVKELFG----------FKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTT-TRFHQEKN-GATF 137 (456)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CSEEEEESSHHHHHHHHHHHHCCTTEEEEESSCCHH-HHHHHHHT-TEEE
T ss_pred hccCCchHHHHHHHHHHHhC----------CCeEEECCCHHHHHHHHHHHhcCCCCeEecCcchHH-HHHHHHHc-Ccee
Confidence 48777778899999999986 467899999999999999999999999988776443 33444544 8888
Q ss_pred EEeecCC--------CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 169 VPVVCDS--------SNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 169 ~~v~~~~--------~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
+.+..+. ...+.+|++.|+++|++... .++.++++.+|+|+. |.+++.+++++|.++|++||+.+++|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~--~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~ 215 (456)
T d1c7ga_ 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDA 215 (456)
T ss_dssp EECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred eeccccccccccccCCccccCCHHHHHHHhhhcCC--ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEc
Confidence 7765421 22457899999999987422 256788999999976 678899999999999999999999999
Q ss_pred ccccCc--cC----CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhh-------
Q 011570 240 IYAATV--FT----KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSS------- 306 (483)
Q Consensus 240 ay~~~~--~~----~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~------- 306 (483)
++.... +. ......++.++..++- ..- .++..|++|.++.++ .|++++.++.+.+..+....
T Consensus 216 a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~--~~a-d~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~ 290 (456)
T d1c7ga_ 216 TRCVENAYFIKEQEAGYENVSIKDIVHEMF--SYA-DGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPS 290 (456)
T ss_dssp TTHHHHHHHHHHHSTTCTTSCHHHHHHHHH--TTC-SEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTT
T ss_pred chhhcchhhhcccccccCCCChhhhccccc--ccc-ccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcc
Confidence 974210 00 0011123333322110 112 244569999987553 37888877777666543321
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCch---hhccChHHHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHL---LKEQTYEAEM 383 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~---~~~~~~~~~~ 383 (483)
.+..+.....+++..+..... .++++ +-.++.+++.+.|.+.|+.+..+.++..++++.... .....+. ..
T Consensus 291 ~g~~~~~~~~a~a~~l~e~~~-~~~l~----~r~~~~~~L~e~L~~~g~~vv~p~g~~~v~vda~~~~~~i~~~~~~-~~ 364 (456)
T d1c7ga_ 291 YGGLAGRDMEAMAIGLREAMQ-YEYIE----HRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFP-AQ 364 (456)
T ss_dssp TTTCCHHHHHHHHHHHHHHTC-HHHHH----HHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEEHHHHCTTSCGGGCH-HH
T ss_pred cchhhHHHHHHHHHHHHHhcC-HHHHH----HHHHHHHHHHHHHHhccCCcccCCCCcceeEechhhccCCCccccc-HH
Confidence 122233322222222211000 11122 224455788889999999988888888888765322 1112222 23
Q ss_pred HHHHHHHHhcCeEeeCCCCC--CC---------CCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 384 ALWRVIINEVKLNVSPGSSF--HC---------PNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f--~~---------~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.+...++.+.||...+...+ +. .....+|+++.. .|+++++.+++.|+++.++..+-
T Consensus 365 ~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i 434 (456)
T d1c7ga_ 365 SLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI 434 (456)
T ss_dssp HHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhc
Confidence 56677777889975432110 00 012369999963 38999999999999887765443
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=8.5e-20 Score=176.63 Aligned_cols=331 Identities=11% Similarity=0.115 Sum_probs=202.1
Q ss_pred cccccchhhhhc-HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 48 VIQMGLAENLLC-HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 48 ~i~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
.++|+. +|+.+ .+.+.+++.+... .....|+......++|+.+|++++ .+..+++|+
T Consensus 4 ~~~f~s-~n~~g~~P~v~~A~~~a~~------------~~~~~~~~~~~~~~l~~~la~~~g---------~~~~v~f~~ 61 (345)
T d1v72a1 4 ALGFSS-DNIAGASPEVAQALVKHSS------------GQAGPYGTDELTAQVKRKFCEIFE---------RDVEVFLVP 61 (345)
T ss_dssp CCBCSC-GGGCCCCHHHHHHHHHTTS------------SCCCSTTCSHHHHHHHHHHHHHHT---------SCCEEEEES
T ss_pred CcCcCC-CCCCCCCHHHHHHHHHHhc------------cCccccCCCHHHHHHHHHHHHHHC---------CCcEEEECC
Confidence 467774 56654 3455566654211 123446555567789999998886 245799999
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH--hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee-EE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL--RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK-GV 203 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~--~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~i 203 (483)
|+++++..++..++.+++.+++....+....... ....+..+..++.+. +...+++.++..+.+.......+. .+
T Consensus 62 sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 139 (345)
T d1v72a1 62 TGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPAC 139 (345)
T ss_dssp CHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred chHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCcccccccccc--cccccHHHhhhhhccccccccccccee
Confidence 9999999999999999988888776654333221 112366666655433 456899999988864322111233 44
Q ss_pred EEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCC
Q 011570 204 LITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFP 283 (483)
Q Consensus 204 ~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~ 283 (483)
+.+++.|++|...+.++++++.++|++||+++++|+++....+.. .. .+...... .........+.+|..+ .
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~-~~-~~~~~~~~-----~~~~~~~~~~~~~~~~-~ 211 (345)
T d1v72a1 140 VSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS-LG-CSPAEMTW-----KAGVDALSFGATKNGV-L 211 (345)
T ss_dssp EEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHH-HT-CCTTTTTG-----GGTCCEEEECCGGGTC-S
T ss_pred eeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccc-cc-cCHHHhhc-----cccccccccCcccccc-c
Confidence 666778999999999999999999999999999999996533221 10 11111100 1123333344444433 2
Q ss_pred CceEEEEEecChHHH-HHHHHhhhc-CCCChH--HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee
Q 011570 284 GFRVGIIYSYNDQVV-SCARKMSSF-GLVSSQ--TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL 358 (483)
Q Consensus 284 GlRiG~li~~~~~l~-~~~~~~~~~-~~~s~~--~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~ 358 (483)
+. |.......... ......... ...+.. ...+....+.+..+ .+......++...+...+.++ |+.+.
T Consensus 212 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~g~~~~ 284 (345)
T d1v72a1 212 AA--EAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLW-----LRNARKANAAAQRLAQGLEGLGGVEVL 284 (345)
T ss_dssp SC--EEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHH-----HHHHHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred cc--cccccchhhhhhhccccccccccccchhhHHhhhhHHHHHHhhh-----hhhccchhhHHHHHHHHHHhcCCcEec
Confidence 22 33333233222 222222222 212222 22223333444332 233334455556777788887 78887
Q ss_pred cCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHH
Q 011570 359 KSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSF 433 (483)
Q Consensus 359 ~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~ 433 (483)
.|.++++++++++. +.++.|++ .||.|.++. .+++.+||+++. +|+|+++.++++|+++
T Consensus 285 ~p~~~niv~~~~~~-----------~~~~~L~~-~gi~v~~~~----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 285 GGTEANILFCRLDS-----------AMIDALLK-AGFGFYHDR----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp SCCCSSEEEEEECH-----------HHHHHHHH-TTCBCBCSS----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred cCCCccEEEEEcCH-----------HHHHHHHH-cCCCccccC----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 77777899998863 44566665 499876543 246789999976 5999999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=5.1e-20 Score=182.31 Aligned_cols=296 Identities=17% Similarity=0.184 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcChHHHHhhh--cCcEEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGFDRDLRWR--TGVQLVP 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~~~~~~~~--~G~~~~~ 170 (483)
.+.|+.+|++++ +++++|++++|+|+++..++.. ...+|+.|++....|+.+....+.+ .|++++.
T Consensus 47 ~~aR~~ia~l~~--------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~ 118 (376)
T d1eg5a_ 47 EKAREKVAKVLG--------VSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118 (376)
T ss_dssp HHHHHHHHHHHT--------SCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcC--------CCCCcEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEE
Confidence 456888888887 6889999999999999998864 4577889998888887766544321 4999999
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+|+++ ++.+|++++++++.+ ++++|++++++|+||...+.+++.++++. ...++++++|.++.. +. .
T Consensus 119 vp~~~--~~~id~~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~i~~~~~~-~~~~~~~~vD~~q~~---g~-~ 185 (376)
T d1eg5a_ 119 VPVDS--RGVVKLEELEKLVDE------DTFLVSIMAANNEVGTIQPVEDVTRIVKK-KNKETLVHVDAVQTI---GK-I 185 (376)
T ss_dssp CCBCT--TSCBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHH-HCTTCEEEEECTTTT---TT-S
T ss_pred EcCCC--CCeECHHHHHHhcCC------CceEEEEECCccccceeeeehhhhhhhhh-cccCceeEEEeeecc---cc-c
Confidence 99876 457999999999864 89999999999999999996666655543 345899999999863 22 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHH---Hhhh--cCCCChHHHHHHHHhcCCh
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCAR---KMSS--FGLVSSQTQHLIATMLSDD 325 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~---~~~~--~~~~s~~~q~~~~~~l~~~ 325 (483)
+ ..+. ..+..++++|++|.+|.+|..+.|+-- ...+..... .... .+..+......+.......
T Consensus 186 ~-~d~~---------~~~~D~~~~s~~K~~gp~G~~~l~~~~-~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (376)
T d1eg5a_ 186 P-FSLE---------KLEVDYASFSAHKFHGPKGVGITYIRK-GVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIA 254 (376)
T ss_dssp C-CCCT---------TTCCSEEEEEGGGGTSCTTCEEEEECT-TSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHH
T ss_pred c-cccc---------ccCccceecccceeecCCCceeEEecc-CcccCCcccCCCCcccccCCcccchhhhhHHHHhhcc
Confidence 1 2222 225568899999999988876666532 111100000 0000 1112233333332222111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCc---eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCC
Q 011570 326 QFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNA---GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSS 402 (483)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~---g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~ 402 (483)
................++.+.|...+........ ...+.+.++.. . ...+. ..++++||.++.|..
T Consensus 255 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~-~~L~~~gI~vr~G~~ 323 (376)
T d1eg5a_ 255 ---VEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-R------GSTLQ-NLLSGYGIYVSTSSA 323 (376)
T ss_dssp ---HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-C------HHHHH-HHHHHTTEECBC---
T ss_pred ---ccchhhhhhhhhhhhhhhccccccccccccccccccccceeeeccCCC-C------HHHHH-HHHhhCCeEEeCcch
Confidence 1112222333444556667777665432221111 11222333321 1 11333 346678999999876
Q ss_pred CCCCC-----------------CCEEEEEecc-CCHHHHHHHHHHHHHHHH
Q 011570 403 FHCPN-----------------PGWFRVCFAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 403 f~~~~-----------------~~~iRis~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
|.... .+++|+|++. .|+++++.++++|++++.
T Consensus 324 c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 324 CTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp ---------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 54221 2469999976 589999999999999875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.82 E-value=3.6e-18 Score=170.81 Aligned_cols=293 Identities=16% Similarity=0.183 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHH----hcCCCCeEEEeCCCCcChHHHH----hhhcCcE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFC----LADPGDAFLVPTPYYPGFDRDL----RWRTGVQ 167 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~----l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~ 167 (483)
++.|+.+|++++ ++ ++.|++|+++++++++++.. -.++||+|++.+-.|+.....+ +.. |.+
T Consensus 69 e~aR~~ia~llg--------a~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~-g~~ 139 (408)
T d1t3ia_ 69 EAVRNKVAKFIN--------ARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT-GAV 139 (408)
T ss_dssp HHHHHHHHHHTT--------CSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHH-CCE
T ss_pred HHHHHHHHHHhC--------CCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhcc-Cce
Confidence 467888888876 44 57899999999999988865 3678999999998888655443 333 899
Q ss_pred EEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccC
Q 011570 168 LVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFT 247 (483)
Q Consensus 168 ~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~ 247 (483)
+..+|.+..+ ..+.+.+++++. +++++|.++.-+|-||.+.+ +++|.++|+++|+++++|.+++. +
T Consensus 140 v~~~~~~~~~--~~~~~~l~~~~~------~~t~lv~i~~~~~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~---g 205 (408)
T d1t3ia_ 140 LKFVQLDEQE--SFDLEHFKTLLS------EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA---P 205 (408)
T ss_dssp EEEECBCTTS--SBCHHHHHHHCC------TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT---T
T ss_pred Eeeeeccccc--cccHHHhhhccC------CCceEEEEecccccccccCc---HHHHhhhhhccCceeeeccceec---c
Confidence 9999876543 678899988875 38999999999999999999 77788889999999999999863 2
Q ss_pred CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh----------------------
Q 011570 248 KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS---------------------- 305 (483)
Q Consensus 248 ~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~---------------------- 305 (483)
. -..++..+ +..+++.|..|.+|-+| +|+++.. +..........
T Consensus 206 ~--~~id~~~~---------~~D~~~~s~hK~~gp~G--~g~l~v~-~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r 271 (408)
T d1t3ia_ 206 H--YPLDVQLI---------DCDWLVASGHKMCAPTG--IGFLYGK-EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHK 271 (408)
T ss_dssp T--SCCCHHHH---------TCSEEEEEGGGTTSCTT--CEEEEEC-HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGG
T ss_pred c--cccccccc---------CCceEEeccccccCCCC--ccccccc-hhhhhcCCceecCCcccccccccccccCCchhh
Confidence 2 22455444 34577889999877555 7999884 44333221000
Q ss_pred -hcCCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcC-CceeecC-----CceEEEeeecCchhhcc
Q 011570 306 -SFGLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQV-GIGCLKS-----NAGLFLWMDLHHLLKEQ 377 (483)
Q Consensus 306 -~~~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~-----~~g~f~~~~l~~~~~~~ 377 (483)
..++.+.+...++...++ ++.+ -.++..++.....+++.+.+.+. ++.+..+ ..+..+.+.++.. +
T Consensus 272 ~e~Gt~~~~~~~~l~~al~---~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~~-~-- 345 (408)
T d1t3ia_ 272 FEAGTPAIAEAIALGAAVD---YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGL-H-- 345 (408)
T ss_dssp GCCSSCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTB-C--
T ss_pred hcCCcHHHHHHHHHHHHHH---HHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCCC-C--
Confidence 013334444444444443 1111 12344455556667777878776 4554421 1122444555531 1
Q ss_pred ChHHHHHHHHHHHHhcCeEeeCCCCCCC------CCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 378 TYEAEMALWRVIINEVKLNVSPGSSFHC------PNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 378 ~~~~~~~~~~~Ll~~~gV~v~pg~~f~~------~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++... |.++||.++.|+.|.. +.++++|||++. .+++|++.+++.|+++++..
T Consensus 346 ----~~~v~~~-L~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 346 ----ASDVATM-VDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp ----HHHHHHH-HHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHH-HhhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 1244444 4678999999887642 235789999987 59999999999999988764
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.2e-18 Score=173.00 Aligned_cols=299 Identities=12% Similarity=0.142 Sum_probs=196.0
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH--HhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRD--LRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~--~~~~~G~~~~~v~ 172 (483)
+.+.|+.++++++ +. +..|++|.|+|++++.++..++.+|+.+++....+...... .... +..++.+.
T Consensus 54 ~~ea~~~l~~llg--------~~~~~~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 124 (388)
T d1h0ca_ 54 MDEIKEGIQYVFQ--------TRNPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERI-GARVHPMT 124 (388)
T ss_dssp HHHHHHHHHHHHT--------CCCSEEEEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHHHHHHHHHHH-C--CBCCB
T ss_pred HHHHHHHHHHHhC--------CCCCcEEEEcCcHHHHHHHHHHHhhccCCceeeecccceeeeeccccccc-cccccccc
Confidence 3455555666555 33 33688999999999999999999999999999887654332 2222 66666655
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+. +..+|.+.+++.+.+. ++++|++++.+|.||.+.+ +++|.++|+++|+++++|.+.+. +. .+
T Consensus 125 ~~~--~~~~~~~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~~i~~~~~~~g~~~~vD~~qs~---g~-~~- 189 (388)
T d1h0ca_ 125 KDP--GGHYTLQEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LDGFGELCHRYKCLLLVDSVASL---GG-TP- 189 (388)
T ss_dssp CCT--TCCCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHTTTCEEEEECTTTT---TT-SC-
T ss_pred cCC--ccccchHHHHHHhccC-----CcceEEEeeeeeccccccC---HHHHHHHhhcccccceecccccc---cc-cc-
Confidence 543 3467888888877653 7899999999999999999 88889999999999999999863 22 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-----------------hh-------hc-
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-----------------MS-------SF- 307 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-----------------~~-------~~- 307 (483)
.++. ..+..+++.|..|.++.++ -+|+++.. ....+.... .. .+
T Consensus 190 ~d~~---------~~~~D~~~~s~~K~~~gp~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (388)
T d1h0ca_ 190 LYMD---------RQGIDILYSGSQKALNAPP-GTSLISFS-DKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYH 258 (388)
T ss_dssp CCTT---------TTTCSEEEEESSSTTCCCT-TCEEEEEC-HHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCC
T ss_pred cccc---------ccccceecccccccccCCC-ceEEEeec-HHHHHhhhhccccccccccccchhhhhhhhcccccccc
Confidence 2222 2244577889999985333 36777774 333322211 00 00
Q ss_pred CCCChHHHHHHHHhcCChhHHHH-HHHHHHHHHHHHHHHHHHhhhcCCceeecCC----ceEEEeeecCchhhccChHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEK-FIAESAKRIAERHKAFTWGLSQVGIGCLKSN----AGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~----~g~f~~~~l~~~~~~~~~~~~ 382 (483)
+..+.....++...+. ++.+ -++....+..+..+++.+.+...|+....++ ....+.+.+|+..+.
T Consensus 259 ~t~~~~~~~~~~~al~---~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~rs~~i~~~~~p~~~~~------ 329 (388)
T d1h0ca_ 259 HTIPVISLYSLRESLA---LIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVPAGYDW------ 329 (388)
T ss_dssp SCCCHHHHHHHHHHHH---HHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------
T ss_pred ccccHHHHHHHHHHHH---HHHHhccccccccccchhHHHHHHHhhcCcccccCCHHHcCCeEEEEECCCCCCH------
Confidence 1122222222222221 1111 1344455566666777777777665443222 122456677754332
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE-ecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVC-FAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis-~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
.++...|++++||.++.|... ...+.|||+ ++. .+.++++.++++|++++++.++.
T Consensus 330 ~~~~~~L~~~~gI~v~~G~~~--~~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 330 RDIVSYVIDHFDIEIMGGLGP--STGKVLRIGLLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp HHHHHHHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcCCEEEeCCchh--hcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 377888888899999988643 345689999 665 68999999999999999988765
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.78 E-value=3e-17 Score=165.90 Aligned_cols=320 Identities=14% Similarity=0.105 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhH-HHHHHHHHh---cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATG-AHETVAFCL---ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~-al~~~~~~l---~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
..+...+.+++.+.+|. + .....++|+|+++ ++..++.++ ..+++.|+++...|..+..++... |.+.+.|+
T Consensus 93 ~~le~~~~~~~~~l~g~--~-~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~-g~~~~~v~ 168 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGV--H-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA-GFEPVVIE 168 (445)
T ss_dssp HHHHHHHHHHHHHHHTC--T-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCC--C-cccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc-CCeeEEEE
Confidence 46777788888777772 1 2345666777665 444444443 456789999999999999998876 99988886
Q ss_pred cC-CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCC
Q 011570 173 CD-SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESS 251 (483)
Q Consensus 173 ~~-~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~ 251 (483)
.. .+..+.+|+++|+++|.+...+ ++.+|++++|+|++|.+-+ +++|+++|+++|+++++|++|+...... .
T Consensus 169 ~~~~~~~~~id~~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~-~- 241 (445)
T d3bc8a1 169 NVLEGDELRTDLKAVEAKIQELGPE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKC-M- 241 (445)
T ss_dssp CEEETTEEECCHHHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH-H-
T ss_pred eeccCcccccCHHHHHHHHHhcccc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhc-c-
Confidence 42 2346889999999999864332 5788999999999999988 8889999999999999999997532111 0
Q ss_pred cchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHHHHH--hcCChhHHH
Q 011570 252 FVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHLIAT--MLSDDQFVE 329 (483)
Q Consensus 252 ~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~~~~--~l~~~~~~~ 329 (483)
........ -.+..++..|.+|.++ .+.-.|+++..+..+.+.+...............+.+. .+....
T Consensus 242 --~~~~~~~~----~~~vd~~~~s~hK~~~-~p~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 311 (445)
T d3bc8a1 242 --HLIQQGAR----VGRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG--- 311 (445)
T ss_dssp --HHHHHHHH----HSCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHH---
T ss_pred --ccchhccC----cCCcceEEecCccccc-cCCCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHhhhc---
Confidence 11111110 0123356778999886 33446788886766666554433333223332222222 221111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc----CCceeec-CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee----CC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQ----VGIGCLK-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS----PG 400 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~----~gi~~~~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pg 400 (483)
.....+...++.+++.+.|.+ .|..+.. +......++.+........ ....++...|. +.||... ++
T Consensus 312 --~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~L~-~~gI~~~~~~~~~ 387 (445)
T d3bc8a1 312 --YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHD-KAVTQLGSMLF-TRQVSGARAVPLG 387 (445)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSS-CHHHHHHHHHH-HTTCCSCEEECSC
T ss_pred --chhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCC-CCHHHHHHHHH-HcCCCcceeeccc
Confidence 222223333334444444433 3544332 3333444444432211111 12234555555 4466211 11
Q ss_pred C----------CCCCC----CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhcc
Q 011570 401 S----------SFHCP----NPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEAK 441 (483)
Q Consensus 401 ~----------~f~~~----~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~~ 441 (483)
. .|+.. ...++|++++. .++++++.++++|++++++.++.+
T Consensus 388 ~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~~ 443 (445)
T d3bc8a1 388 NVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQ 443 (445)
T ss_dssp CEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 01111 12469998865 599999999999999999987653
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.77 E-value=1.6e-16 Score=155.19 Aligned_cols=209 Identities=18% Similarity=0.232 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~ 173 (483)
..|.+.||+..+ .+..++++++..|+..++.+++++||+|+++...|++....+... .|+++..++.
T Consensus 62 ~~LE~~la~LEg----------~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 62 NLLEARMASLEG----------GEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHhC----------CcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 456666666543 567888999999999999999999999999999998877765432 4888888763
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
-|++.+++++++ ++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..|+.-.+.. +
T Consensus 132 -------~d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~--P-- 191 (392)
T d1gc0a_ 132 -------ADLQALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR--P-- 191 (392)
T ss_dssp -------TCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC--G--
T ss_pred -------cCHHHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccccC--h--
Confidence 368899988864 8999999999999999999 8999999999999999999986432221 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHH-HHHhhh-c-CCCChHHHHHHHHhcCChhHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSC-ARKMSS-F-GLVSSQTQHLIATMLSDDQFVE 329 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~-~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~ 329 (483)
+ +.+-.|++.|.+|.++ -..+-.|.+++.++.+.+. +..... . ..+++.....+..-++.
T Consensus 192 ----l-------~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T----- 255 (392)
T d1gc0a_ 192 ----L-------ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT----- 255 (392)
T ss_dssp ----G-------GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-----
T ss_pred ----H-------HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-----
Confidence 1 1244588999999985 3335567887744443332 222222 2 34667666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 330 KFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 330 ~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 256 --L~lRm~~~~~nA~~lA~~L~~h 277 (392)
T d1gc0a_ 256 --LNLRMDRHCANAQVLAEFLARQ 277 (392)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555677778888888877
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.77 E-value=9.9e-18 Score=170.48 Aligned_cols=328 Identities=13% Similarity=0.153 Sum_probs=199.7
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCe-------EEEeCCCCcChHHHHh
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDA-------FLVPTPYYPGFDRDLR 161 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~-------Vlv~~P~y~~~~~~~~ 161 (483)
.|+...+..+|++.++++++ .+.+++++++++|+..++.+++++|+. ++...+.+..+...+.
T Consensus 70 ~y~~~~~~~~le~~~a~l~g----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~~ 139 (465)
T d1ax4a_ 70 AYAGSRNYYDLKDKAKELFN----------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVE 139 (465)
T ss_dssp CSSSCHHHHHHHHHHHHHHC----------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHC----------CCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHHH
Confidence 47777778899999999875 478999999999999999998766543 3455544555544455
Q ss_pred hhcCcEEEEeecC--------CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhhcC
Q 011570 162 WRTGVQLVPVVCD--------SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINEKN 232 (483)
Q Consensus 162 ~~~G~~~~~v~~~--------~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~~~ 232 (483)
.. |...+.++.. ....+.+|++.++++|++... ..+.+++++.++|.. |.+++.+++++|.++|++||
T Consensus 140 ~~-g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 140 LN-GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA--DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HT-TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc--ccccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 54 8888766532 223567899999999986422 245666666667765 46789999999999999999
Q ss_pred cEEEEccccccCccC------CCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChH-HHHHHHHh-
Q 011570 233 IHLVCDEIYAATVFT------KESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQ-VVSCARKM- 304 (483)
Q Consensus 233 ~~iI~Deay~~~~~~------~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~-l~~~~~~~- 304 (483)
+++|+|+++...... ......+.......+ ..-..++..|.+|. +.+.+.|++++++.. +.......
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~d~~s~s~~k~--~~~~~~g~l~~~~~~~~~~~~~~~~ 291 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM---YKYADALTMSAKKD--PLLNIGGLVAIRDNEEIFTLARQRC 291 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH---GGGCSEEEEETTST--TCCSSCEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhcccc---ccccceeEeecccC--cccccceeEeecchHHHHHhhhccc
Confidence 999999998531100 000001222222111 00112333455555 466668999886543 22222111
Q ss_pred ---hh---cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhh---
Q 011570 305 ---SS---FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLK--- 375 (483)
Q Consensus 305 ---~~---~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~--- 375 (483)
.. +...+.....+++..+.... .....++..++.+++.+.|.+.|+++..+.+++++.++......
T Consensus 292 ~~~~~~~~~~~~~~~~~~a~~~~~~e~~-----~~~~~~~~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 366 (465)
T d1ax4a_ 292 VPMEGFVTYGGLAGRDMAAMVQGLEEGT-----EEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIP 366 (465)
T ss_dssp HHHTCSTTTTTCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTTCCBCSSCCSSEEEEESTTTCTTSC
T ss_pred cccccCCCcchhhHHHHHHHhhhhHHhh-----hHHHHHHHHHHHHHHHHHHHhhcCccccCCCcceeeeehhhhcCCCc
Confidence 11 12223333333322221110 11122333455678899999999988888888887776543221
Q ss_pred ccChHHHHHHHHHHHHhcCeEeeCCCCC--------C---CCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 376 EQTYEAEMALWRVIINEVKLNVSPGSSF--------H---CPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~~~gV~v~pg~~f--------~---~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
...+. ...+...++.+.||........ + ....+.+|+++.. .|+|+++.++++|++++++..+-
T Consensus 367 ~~~~~-~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i 443 (465)
T d1ax4a_ 367 GDQFP-AQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATL 443 (465)
T ss_dssp GGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred cccch-hHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 11112 2345566667779875432110 0 0123479999742 38999999999999988876543
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.76 E-value=7.9e-16 Score=150.28 Aligned_cols=197 Identities=17% Similarity=0.184 Sum_probs=144.2
Q ss_pred CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
.+..++++++..|+..++.+++++||+|+++...|.+....+.. ..|+++..++. -|++.+++++++
T Consensus 78 g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~-------~d~~~~~~~i~~--- 147 (397)
T d1y4ia1 78 GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------GKPEEIRAAMRP--- 147 (397)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCCT---
T ss_pred CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCC-------CCHHHHHHhcCC---
Confidence 46778899999999999999999999999999999876665432 14999988763 268889988863
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
++|+|++.+|.|||..+.+ +++|+++|+++|+++|+|..|+.-.+.. + + ..+..|++.|
T Consensus 148 ---~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~~-----P---l-------~~GaDivihS 206 (397)
T d1y4ia1 148 ---ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ-----P---L-------QLGADIVVHS 206 (397)
T ss_dssp ---TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-----G---G-------GGTCSEEEEE
T ss_pred ---CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCcccCc-----c---h-------hcCCCEEEEe
Confidence 8999999999999999999 8889999999999999999987432221 2 1 1244588999
Q ss_pred CccccCCC-CceEEEEEecChHHHHH-HHHhhh-c-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011570 276 LSKDMGFP-GFRVGIIYSYNDQVVSC-ARKMSS-F-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS 351 (483)
Q Consensus 276 ~SK~~g~~-GlRiG~li~~~~~l~~~-~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 351 (483)
++|.+|-- ..=.|.+++.++.+.+. +..... . ..+++.....+..-|+. +.-+.++..++...+.+.|+
T Consensus 207 ~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~lRm~~~~~nA~~lA~~L~ 279 (397)
T d1y4ia1 207 VTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCENALKIARFLE 279 (397)
T ss_dssp TTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HHHHHHHHHHHHHHHHHHHH
Confidence 99998532 34456777744444332 222332 2 33566666666666655 33445556777788889998
Q ss_pred cC
Q 011570 352 QV 353 (483)
Q Consensus 352 ~~ 353 (483)
++
T Consensus 280 ~h 281 (397)
T d1y4ia1 280 GH 281 (397)
T ss_dssp TC
T ss_pred hC
Confidence 87
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=1.1e-15 Score=148.95 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~ 173 (483)
..|.+.+|.+-+ .+..++++++..|+.. +..++++||+|++..+.|+.....++.. .|+++..+..
T Consensus 52 ~~le~~la~LE~----------~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 52 DALESLLAKLDK----------ADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred HHHHHHHHHHcC----------CceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 355555555543 4677888888999975 5678999999999999998887766542 4888877653
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.+++.++++++ +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..++..++. .+
T Consensus 121 -------~~~~~~~~ai~------~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~--~P-- 180 (380)
T d1ibja_ 121 -------TKLDEVAAAIG------PQTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLS--RP-- 180 (380)
T ss_dssp -------TSHHHHHHHCC------SSEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTC--CG--
T ss_pred -------chHHHHHHHhc------cCccEEEecccccccccccc---HHHHHHHHHHcCCeEEeeccccccccc--cc--
Confidence 36788888875 48999999999999999999 888889999999999999998643222 11
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhh-c-CCCChHHHHHHHHhcCChhHHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSS-F-GLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
+ ..+-.|++.|++|.++-.| .=.|.++..++.+.+.+..... . ...++.....+..-++.
T Consensus 181 ----l-------~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T------ 243 (380)
T d1ibja_ 181 ----L-------ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT------ 243 (380)
T ss_dssp ----G-------GTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT------
T ss_pred ----c-------ccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh------
Confidence 1 2245588999999985322 3457777766666665544333 3 23566666666666665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 244 -l~lRm~~~~~nA~~lA~~L~~h 265 (380)
T d1ibja_ 244 -MALRIEKQQENARKIAMYLSSH 265 (380)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -hhhhHHHHHHHHHHHHHHHHhC
Confidence 3444556677778888888877
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2e-15 Score=147.04 Aligned_cols=209 Identities=19% Similarity=0.195 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~ 173 (483)
..|.+.+|+..+ .+..++++++..|+..++.+++++||+|++....|......+... .|.++..+..
T Consensus 53 ~~le~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~ 122 (384)
T d1cs1a_ 53 DVVQRALAELEG----------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 122 (384)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred HHHHHHHHHHhC----------CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC
Confidence 455566665543 467899999999999999999999999999999998765554432 3666665542
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|.+.+++++.+ ++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..|+...+..
T Consensus 123 -------~d~~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~----- 181 (384)
T d1cs1a_ 123 -------GDEQALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN----- 181 (384)
T ss_dssp -------TCHHHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-----
T ss_pred -------CCHHHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccccc-----
Confidence 367888888874 8999999999999999999 8888999999999999999996432221
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHHhh-hc-CCCChHHHHHHHHhcCChhHHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARKMS-SF-GLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~~~-~~-~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
+ + ..+-.|++.|.+|.++- ...=.|.+++.++.+.+.+.... .. ..+++.....+..-++.
T Consensus 182 P---l-------~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T------ 245 (384)
T d1cs1a_ 182 P---L-------ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT------ 245 (384)
T ss_dssp G---G-------GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT------
T ss_pred c---c-------ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch------
Confidence 1 1 12455889999999852 22445678886666655444322 23 33566665566555554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+.-+.++..++...+.+.|+.+
T Consensus 246 -L~lRm~~~~~nA~~lA~~L~~h 267 (384)
T d1cs1a_ 246 -LVPRMELAQRNAQAIVKYLQTQ 267 (384)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTC
T ss_pred -hHHHHHHHHHHHHHHHHhcccC
Confidence 3344555677888889999887
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=3.8e-16 Score=157.13 Aligned_cols=299 Identities=12% Similarity=0.067 Sum_probs=184.6
Q ss_pred HHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCcEEEEeec-CCCC
Q 011570 101 NAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVC-DSSN 177 (483)
Q Consensus 101 ~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~-~~~~ 177 (483)
..+..++.+..| .+....++..|+++++..++.+.. .+++.|+++.-.|+.+...+... |.+.+.++. ..+.
T Consensus 116 ~~~~~~~~~~~g----~~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~-g~~~~~v~~~~~~~ 190 (434)
T d2z67a1 116 NKILESFFKQLG----LNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFV-GMNMRLVETVLDGD 190 (434)
T ss_dssp HHHHHHHHHHTT----CCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHT-TCEEEEECCEEETT
T ss_pred HHHHHHHHHhcC----CCcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHh-CCcceEEEeecCCC
Confidence 333344444444 234455666677777777776653 37899999999999998888875 999888764 2234
Q ss_pred CcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHH
Q 011570 178 DFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAE 257 (483)
Q Consensus 178 ~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~ 257 (483)
.+.+|+++|+++|.+....+ ++.+|++++|++++|.+-+ +++|+++|+++|+++++|++|+...... .....
T Consensus 191 ~~~~d~~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~----~~~~~ 262 (434)
T d2z67a1 191 RVYVPVEDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY----LEKLK 262 (434)
T ss_dssp EEECCHHHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH----HHHHH
T ss_pred ccCCCHHHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhc----ccccc
Confidence 57899999999998765543 5668899999999999988 8889999999999999999997421100 01111
Q ss_pred hhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhcCCCChHHHHH--HHHhcCChhHHHHHHHHH
Q 011570 258 IIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSFGLVSSQTQHL--IATMLSDDQFVEKFIAES 335 (483)
Q Consensus 258 l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~q~~--~~~~l~~~~~~~~~~~~~ 335 (483)
... .....+++.|++|.++ .+...|+++..++.+.+.+...........++..+ ....+.... ....
T Consensus 263 ~~~-----~~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g-----~~~~ 331 (434)
T d2z67a1 263 KAF-----KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKN-----YLEL 331 (434)
T ss_dssp HHH-----TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHH-----HHHH
T ss_pred ccc-----cCCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhc-----chhH
Confidence 111 2344567889999887 44446777776776666654443333233333222 222222222 2333
Q ss_pred HHHHHHHHHHHHHhhhc----CCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEee----CCCCC----
Q 011570 336 AKRIAERHKAFTWGLSQ----VGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVS----PGSSF---- 403 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~----~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~----pg~~f---- 403 (483)
.++..+..+++.+.|++ .|..+........+.+.+... ..++...|. +.||... +...+
T Consensus 332 ~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~~--------~~~l~~~L~-~~gI~g~~v~~~l~~~g~~~ 402 (434)
T d2z67a1 332 VKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSD--------PVEIAAKLY-NLRVTGPRGIKKTDHFGNCY 402 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSSC--------HHHHHHHHH-HTTEESCEEECTTCHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCCC--------HHHHHHHHH-HcCCeeeehhhhccccCeee
Confidence 34444455555555544 366665444332333333321 225555555 5588532 11111
Q ss_pred -CCCCCCEEEEEecc-CCHHHHHHHHHHHHH
Q 011570 404 -HCPNPGWFRVCFAN-MDDRTMEIALSRITS 432 (483)
Q Consensus 404 -~~~~~~~iRis~~~-~~~e~l~~~l~~L~~ 432 (483)
.....+++|++++. .++|+++.++++|++
T Consensus 403 ~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 403 LGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp SSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 11124689999875 599999999999975
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.73 E-value=6e-15 Score=144.18 Aligned_cols=209 Identities=15% Similarity=0.185 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~ 173 (483)
..|.+.||++.+ .+..++++++..|+..++.+++++||+|++....|++....+... .|+++..+..
T Consensus 70 ~~LE~~la~LEg----------g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~ 139 (398)
T d1qgna_ 70 VVLEEKISALEG----------AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 139 (398)
T ss_dssp HHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHhC----------CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc
Confidence 456666666543 568899999999999999999999999999999998876655432 4788777653
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
. +.+..++.+.. +++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..++...+.. +
T Consensus 140 ~-------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~--P-- 200 (398)
T d1qgna_ 140 A-------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--A-- 200 (398)
T ss_dssp S-------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC--T--
T ss_pred c-------chhhhhhhhcc-----ccceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeeccccCC--c--
Confidence 2 34444444332 48999999999999999999 8899999999999999999986432221 1
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHh-hhcC-CCChHHHHHHHHhcCChhHHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKM-SSFG-LVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~-~~~~-~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
+ ..+-.|++.|.+|.+|-.| +=.|.++. ++.+...++.. ..++ ..++.....+..-++.
T Consensus 201 ----l-------~~GaDiVihS~TKy~~Ghsdv~~G~v~~-~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T------ 262 (398)
T d1qgna_ 201 ----L-------ALGADLVLHSATKFLGGHNDVLAGCISG-PLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT------ 262 (398)
T ss_dssp ----T-------TTTCSEEEECTTTTTTCSSSCCCEEEEE-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG------
T ss_pred ----h-------hhCCCEEEEechhhcCcccceeehhhcc-hhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH------
Confidence 1 2345588999999986333 33456665 55555544433 3333 3566665556555544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
+..+.++..++...+.+.|+++
T Consensus 263 -L~lRm~~~~~nA~~lA~~L~~h 284 (398)
T d1qgna_ 263 -LHLRVQQQNSTALRMAEILEAH 284 (398)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHhC
Confidence 3444556677788888889887
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.72 E-value=5.6e-16 Score=149.49 Aligned_cols=346 Identities=14% Similarity=0.115 Sum_probs=214.0
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
..|+|-.+||..++. +.+++... +.......+.....|+...-..++.....+...+.++ ....+|-..+
T Consensus 24 ~~l~LiaSEN~~S~~-v~~a~~S~-----l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~----a~~anVqp~S 93 (405)
T d1kl1a_ 24 AKIELIASENFVSRA-VMEAQGSV-----LTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG----AEHANVQPHS 93 (405)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSG-----GGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC----CSEEECCCSS
T ss_pred cCceEeccCCcCCHH-HHHHhcCc-----ccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC----CCcceeeccC
Confidence 347888888876643 33443221 1000000111112233222234444444466666666 3444566655
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHH-----HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCcee
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRD-----LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIK 201 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~-----~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 201 (483)
| +.+...++.+|++|||+|+..++..+++... .... ..+.+.++++.+ ++.+|.+++++.++.. ++|
T Consensus 94 G-s~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~-~~~~~~y~~d~~-~~~ID~d~l~~~a~~~-----kPk 165 (405)
T d1kl1a_ 94 G-AQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGV-QYNFVAYGVDPE-THVIDYDDVREKARLH-----RPK 165 (405)
T ss_dssp H-HHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHH-HSEEEEECBCTT-TCSBCHHHHHHHHHHH-----CCS
T ss_pred c-hHHHHHHHHHhcCCCCEEEEeecccccccccCccccccce-EEEEEEeccchh-cccccHHHHHHHHHhh-----Ccc
Confidence 5 5566778899999999999998877664432 1122 567888888754 5789999999999875 889
Q ss_pred EEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC
Q 011570 202 GVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG 281 (483)
Q Consensus 202 ~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g 281 (483)
+|++..-.+|- .++ .+++.++|++.|.+++.|-+|......+ ..+++.... -.++..|..|++
T Consensus 166 lIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~-g~~~~P~~~----------aDvvt~tThKtl- 228 (405)
T d1kl1a_ 166 LIVAAASAYPR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAA-GLHPNPVPY----------AHFVTTTTHKTL- 228 (405)
T ss_dssp EEEECCSSCCS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHT-TSSCCSTTT----------CSEEEEESSSTT-
T ss_pred eEEeccccccc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhh-hhcCChhhh----------hhheeccccccc-
Confidence 87776545443 345 7777888889999999999995443333 333332222 236678999997
Q ss_pred CCCceEEEEEecChHHHHHHHHhhhcCCCC-hH--HHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee
Q 011570 282 FPGFRVGIIYSYNDQVVSCARKMSSFGLVS-SQ--TQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL 358 (483)
Q Consensus 282 ~~GlRiG~li~~~~~l~~~~~~~~~~~~~s-~~--~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~ 358 (483)
+|-|-|.+++ ++.+.+.+.....++..+ +. ..++.+..+.+ .+....+...+++.++.+.|.+.|.+.|+++.
T Consensus 229 -rGPrgg~I~~-~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~E--a~~~~fk~Ya~qvv~NAkaLa~~L~~~G~~vv 304 (405)
T d1kl1a_ 229 -RGPRGGMILC-QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGE--ALQDDFKAYAKRVVDNAKRLASALQNEGFTLV 304 (405)
T ss_dssp -CCCSCEEEEE-CHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG
T ss_pred -cCCCCceEEe-cchhHHHHHhhhCcccccCcchhHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHhcCCceee
Confidence 7889999998 566666665544333222 22 22222222221 11222355666778899999999999999987
Q ss_pred cC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC----CCCCEEEEEecc-----CCHHHHHHHHH
Q 011570 359 KS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC----PNPGWFRVCFAN-----MDDRTMEIALS 428 (483)
Q Consensus 359 ~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~----~~~~~iRis~~~-----~~~e~l~~~l~ 428 (483)
.. ..+-.+|+++..... ....++.+|++.||.+.--...+. ..+..|||+... ..++++.++.+
T Consensus 305 ~ggTd~H~vlvdl~~~~~------~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~ 378 (405)
T d1kl1a_ 305 SGGTDNHLLLVDLRPQQL------TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA 378 (405)
T ss_dssp GGSCSSSEEEEECGGGTC------CHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred cCCCccceeeccccccCC------cHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHH
Confidence 43 224478888854211 114466778899998863222211 123569999843 47789999999
Q ss_pred HHHHHHHHh
Q 011570 429 RITSFMLKN 437 (483)
Q Consensus 429 ~L~~~l~~~ 437 (483)
.|.++++..
T Consensus 379 ~I~~~l~~~ 387 (405)
T d1kl1a_ 379 IIGLVLKNV 387 (405)
T ss_dssp HHHHHHTCT
T ss_pred HHHHHHhcC
Confidence 998888654
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.5e-15 Score=147.14 Aligned_cols=349 Identities=13% Similarity=0.050 Sum_probs=214.2
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeC
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSG 126 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~ 126 (483)
..|+|-..||..++. +.+++... +.......++....|+...-..++.....+...+.++ ....+|-. .
T Consensus 27 ~~i~LiaSEN~~S~~-v~~a~~S~-----l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----a~~anVqp-~ 95 (416)
T d1dfoa_ 27 EHIELIASENYTSPR-VMQAQGSQ-----LTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG----ADYANVQP-H 95 (416)
T ss_dssp HSEECCTTCCCCCHH-HHHHHTSG-----GGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT----CSEEECCC-S
T ss_pred cCceEecCcccCCHH-HHHHhcCc-----ccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC----CCcceeec-c
Confidence 347888888876643 33433221 1000000111112233222223444444455556665 33345555 4
Q ss_pred ChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh----cCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeE
Q 011570 127 GATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR----TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKG 202 (483)
Q Consensus 127 G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~----~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 202 (483)
+++.|...++.+|++|||+|+..+..++++...-... ...+.++++++++ ..+|.+.+++.+++. ++|+
T Consensus 96 SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~--~~IDyd~l~~~a~~~-----kPkl 168 (416)
T d1dfoa_ 96 SGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDAT--GHIDYADLEKQAKEH-----KPKM 168 (416)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSS--SSBCHHHHHHHHHHH-----CCSE
T ss_pred cCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCCc--cCccHHHHHHHHHHh-----ccce
Confidence 5566778888999999999999999887765431110 1467788887753 359999999998875 8898
Q ss_pred EEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC
Q 011570 203 VLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF 282 (483)
Q Consensus 203 i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~ 282 (483)
|+...-.+| ..++ .+++.++|.+.|.+++.|.+|......+ ..+++.... ..++.+|++|+|
T Consensus 169 Ii~G~S~y~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~-g~~~sP~~~----------aDvvt~tThKtl-- 230 (416)
T d1dfoa_ 169 IIGGFSAYS--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAA-GVYPNPVPH----------AHVVTTTTHKTL-- 230 (416)
T ss_dssp EEEECSSCC--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHH-TSSCCCTTT----------SSEEEEESSSTT--
T ss_pred EEecccccc--cccC---HHHHHHHHHhcCceEEcchhhhhcceec-cccCCcccc----------cceeeeehhhcc--
Confidence 887644443 4556 7777888889999999999995443333 233332211 237789999997
Q ss_pred CCceEEEEEec--ChHHHHHHHHhhhcCC-CCh--HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCcee
Q 011570 283 PGFRVGIIYSY--NDQVVSCARKMSSFGL-VSS--QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGC 357 (483)
Q Consensus 283 ~GlRiG~li~~--~~~l~~~~~~~~~~~~-~s~--~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~ 357 (483)
+|-|-|.+++. .+.+.+.+.....++. .++ ...++.+..+.+ .+....+...+++.++.+.|.+.|.+.|+++
T Consensus 231 rGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~E--a~~~~fk~Y~~qvv~NA~~La~~L~~~G~~i 308 (416)
T d1dfoa_ 231 AGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKE--AMEPEFKTYQQQVAKNAKAMVEVFLERGYKV 308 (416)
T ss_dssp CCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred cCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 78899999985 2466666654433322 222 122222222221 1111234555677888999999999999988
Q ss_pred ecC-CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCC----CCCCEEEEEecc-----CCHHHHHHHH
Q 011570 358 LKS-NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHC----PNPGWFRVCFAN-----MDDRTMEIAL 427 (483)
Q Consensus 358 ~~~-~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~----~~~~~iRis~~~-----~~~e~l~~~l 427 (483)
... ..+-.+++++....- ....+..+|++.||.+.--...+. ..+..|||+... ..++++++..
T Consensus 309 v~ggTdnHlvlvdl~~~~~------~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA 382 (416)
T d1dfoa_ 309 VSGGTDNHLFLVDLVDKNL------TGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 382 (416)
T ss_dssp GGGSCSSSEEEEECGGGTC------CHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred ccCCCCCceeEEEecccCC------CHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHH
Confidence 742 233467888864211 124567788899999853332221 124569999843 4779999999
Q ss_pred HHHHHHHHHhhh
Q 011570 428 SRITSFMLKNVE 439 (483)
Q Consensus 428 ~~L~~~l~~~~~ 439 (483)
+-|.++++....
T Consensus 383 ~~I~~~l~~~~~ 394 (416)
T d1dfoa_ 383 GWMCDVLDSIND 394 (416)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHcCCc
Confidence 999998876543
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=1.1e-15 Score=149.72 Aligned_cols=296 Identities=13% Similarity=0.149 Sum_probs=182.5
Q ss_pred CcHHHHHHHHHHHHhhhCCCCCcCCCc--EEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEE
Q 011570 95 GLPEFRNAVAKFMGKVRGNRITFDPDR--IVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVP 170 (483)
Q Consensus 95 g~~~Lr~~ia~~~~~~~g~~~~~~~~~--i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~ 170 (483)
-..+.|+.++++++ +.+++ +++|+|+|++++.++..+..+++.+++....+... ....... +.....
T Consensus 34 ~~~~~r~~l~~l~~--------~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 104 (361)
T d1m32a_ 34 VVEQIRQQLTALAT--------ASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLM-GIAHHA 104 (361)
T ss_dssp THHHHHHHHHHHHC--------SSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHH-TCCEEE
T ss_pred HHHHHHHHHHHHhC--------CCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhh-hccccc
Confidence 35788889998887 44554 77888999999999999999988888777664322 2222332 555555
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
+..........+.+...... ..+++++.+++-+|-||...+ +++|.++|+++|+++++|.+++. +. .
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~~g~~~~vDa~qs~---G~-~ 171 (361)
T d1m32a_ 105 YDCGEVARPDVQAIDAILNA------DPTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSF---GG-I 171 (361)
T ss_dssp EECCTTSCCCHHHHHHHHHH------CTTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTT---TT-S
T ss_pred ccccccCCccchhhHHHHHh------ccCccceEEEeeecccccchh---hhhhhhhhcccceeeEeeccccc---Cc-c
Confidence 55443332222222222222 358899999999999999999 88888999999999999999973 22 1
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHH------------------Hhhh--cCC
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCAR------------------KMSS--FGL 309 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~------------------~~~~--~~~ 309 (483)
+ ..+. ..+..+++.|..|.++ -+| +|+++..++ ..+... .... ..+
T Consensus 172 ~-~d~~---------~~~~D~~~~s~~K~l~gp~G--~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 238 (361)
T d1m32a_ 172 P-MDIA---------ALHIDYLISSANKCIQGVPG--FAFVIAREQ-KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFT 238 (361)
T ss_dssp C-CCTT---------TTTCSEEEEESSSTTCCCSS--EEEEEEEHH-HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSC
T ss_pred c-cccc---------ccccceEEeeecccccCCCC--ceEEEechh-hhhhhccccccccccchhhhccccccccccCCC
Confidence 1 2222 2356678889999884 346 788887432 221110 0000 122
Q ss_pred CChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHH
Q 011570 310 VSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 310 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
.+.....++...+.... ..........+.+...+.+.+.++..|+....+. +...+.+.+|...... ..++.
T Consensus 239 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs~~v~~~~~p~~~~~~----~~~~~ 313 (361)
T d1m32a_ 239 SPTHTVLAFAQALKELA-KEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYR----FSEFY 313 (361)
T ss_dssp CCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCCCTTCC----HHHHH
T ss_pred CCchhhhHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcCCcEEEEECCCCCCCC----HHHHH
Confidence 33344444333332110 0111233334455556667777777775543221 2224456666432211 23566
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCEEEEEe-ccCCHHHHHHHHHHHHHHH
Q 011570 387 RVIINEVKLNVSPGSSFHCPNPGWFRVCF-ANMDDRTMEIALSRITSFM 434 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~~~~~~~iRis~-~~~~~e~l~~~l~~L~~~l 434 (483)
..|. +.||.+.+|... .++.+||++ ++.++++++.++++|+++|
T Consensus 314 ~~l~-~~gi~i~~G~~~---~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 314 RRLK-EQGFVIYPGKVS---QSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp HHHH-HTTEECEECCCS---SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHH-HCCcEEECCCcC---CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 6665 569999988543 467899996 4579999999999999875
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=4.4e-15 Score=146.16 Aligned_cols=170 Identities=22% Similarity=0.255 Sum_probs=131.2
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
..++++.+|++++ .++++.++++|.|+.+++.++ +++||+|+++..+|......+... |.+++.++++
T Consensus 33 v~~~E~~la~~~g----------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~-g~~pv~~d~~ 101 (376)
T d1mdoa_ 33 NQELEAAFCRLTG----------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLL-GANPVMVDVD 101 (376)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhcc-ccceeeeccc
Confidence 5788999999876 357788888899999999998 899999999999999999998886 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
.+ .+.+|++.|++++.+ ++++|++++ ..|...+ +.+|.++|+++|++||+|.+++....-. .....
T Consensus 102 ~~-~~~~d~~~l~~~i~~------~tkaIi~~h---~~G~~~~---~~~i~~i~~~~~i~vIeD~a~a~g~~~~-~~~~g 167 (376)
T d1mdoa_ 102 RD-TLMVTPEHIEAAITP------QTKAIIPVH---YAGAPAD---LDAIYALGERYGIPVIEDAAHATGTSYK-GRHIG 167 (376)
T ss_dssp TT-TCCBCHHHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET-TEETT
T ss_pred cc-ccCCCHHHHHHhcCC------CCeEEEEeC---CCCCccc---hhHHHHHHHhcCceEEeccchhccCeeC-Ceecc
Confidence 64 678999999999864 899988764 5788777 7788888889999999999987421111 11000
Q ss_pred HHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhh
Q 011570 255 IAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~ 305 (483)
..+. .+.|| +|.++.+ ..|.+++.++.+.+.++.+.
T Consensus 168 -----------~~g~--~~~Sf~~~K~l~~g--~GG~i~t~~~~l~~~~~~~~ 205 (376)
T d1mdoa_ 168 -----------ARGT--AIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLK 205 (376)
T ss_dssp -----------SSSE--EEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHT
T ss_pred -----------cccC--ccccCCCcCCCCCC--CCCEEEEechhHHHHHHhhc
Confidence 1232 23455 6877532 35888888888877766544
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1.2e-15 Score=154.85 Aligned_cols=324 Identities=14% Similarity=0.141 Sum_probs=192.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEE---------eCCCCcChHHH
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLV---------PTPYYPGFDRD 159 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv---------~~P~y~~~~~~ 159 (483)
.|+..+...+|++.++++++ .+.+++++++++++..++.+++.+||.+++ ....|......
T Consensus 69 ~Y~~~~~~~~le~~~a~l~G----------~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 69 AFSGSRSYYALAESVKNIFG----------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CSSSCHHHHHHHHHHHHHTC----------CSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhcCCchHHHHHHHHHHHHC----------CCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHH
Confidence 47766677899999998875 457889999999999999998877654433 33334444444
Q ss_pred HhhhcCcEEEEeecCCC--------CCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCC-cCCCCHHHHHHHHHHHhh
Q 011570 160 LRWRTGVQLVPVVCDSS--------NDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPL-GTFLDRETLKDIVSFINE 230 (483)
Q Consensus 160 ~~~~~G~~~~~v~~~~~--------~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPt-G~~~~~~~l~~i~~~a~~ 230 (483)
+.. .|..++.++.+.. ....+|++.+++.+++...+ .++++++.+.+|.. |.+++.+++++|.++|++
T Consensus 139 ~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~--~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 139 SQI-NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN--NVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHH-TTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGG--GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHH-cCCeeeecccccccccccccccccCCCHHHHHHHHhhcCcc--ccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 554 4999988876532 13468999999999865322 46777888877654 678899999999999999
Q ss_pred cCcEEEEccccccCc-------cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH
Q 011570 231 KNIHLVCDEIYAATV-------FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK 303 (483)
Q Consensus 231 ~~~~iI~Deay~~~~-------~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~ 303 (483)
||+++|+|+++.... ..+ ....++......+ .....++..|.+|.++ |...|++...++.+......
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~ 289 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAE-YKDWTIEQITRET---YKYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTE 289 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGG-GTTSCHHHHHHHH---GGGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHH
T ss_pred cCCEEEEechhhhcccccccccccc-ccCCcccccchhh---cccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHh
Confidence 999999999974210 000 0012222222111 1123345567888775 33457777766554443322
Q ss_pred hhh----------cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeec---
Q 011570 304 MSS----------FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDL--- 370 (483)
Q Consensus 304 ~~~----------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l--- 370 (483)
... ++..+.....+++..+.... ..++.+ +..++.+++.+.|.+.++.+.++.+.... ++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~----~~~~~~~~l~~~L~~~~~~v~~~~~~~~~-~~~~~~ 363 (467)
T d2v1pa1 290 CRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-NLDWLA----YRIAQVQYLVDGLEEIGVVCQQAGGHAAF-VDAGKL 363 (467)
T ss_dssp HHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CHHHHH----HHHHHHHHHHHHHHHTTCCEEEECSSCEE-EEHHHH
T ss_pred hcccccccccCcchhhhHHHHHHHHHHHhHHhh-hHHHHH----HHHHHHHHHHHHHHhcCCcccCCCcccee-ecchhh
Confidence 111 11222222223222221110 012222 23456677888888887766554433222 221
Q ss_pred -CchhhccChHHHHHHHHHHHHhcCeEeeCCCC--------C---CCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHH
Q 011570 371 -HHLLKEQTYEAEMALWRVIINEVKLNVSPGSS--------F---HCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 371 -~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~--------f---~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~ 436 (483)
+.. ....+. ...+...++.+.||....... . .......+|+++.. .|+|+++.++++|++++++
T Consensus 364 ~~~~-~~~~~~-~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 364 LPHI-PADQFP-AQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp STTS-CGGGCH-HHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCc-chhhhh-hHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 211 111112 224566677788985421110 0 01124579999853 3899999999999999875
Q ss_pred hhh
Q 011570 437 NVE 439 (483)
Q Consensus 437 ~~~ 439 (483)
..+
T Consensus 442 ~~~ 444 (467)
T d2v1pa1 442 AAN 444 (467)
T ss_dssp GGG
T ss_pred HHh
Confidence 543
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.69 E-value=2.2e-15 Score=148.32 Aligned_cols=295 Identities=14% Similarity=0.126 Sum_probs=185.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCc-CCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH--HHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITF-DPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR--DLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~-~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--~~~~~~G~~~~~v~ 172 (483)
..+.|+.++++++ + +...|++++|++.+++.++..++.+|+.+++..-.+..... .... .+.....+.
T Consensus 53 ~~~~r~~l~~ll~--------~~~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 123 (377)
T d1vjoa_ 53 MDEIQSLLRYVWQ--------TENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGR-YGADVRTIS 123 (377)
T ss_dssp HHHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred HHHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhh-hcccccccc
Confidence 4566666666665 3 34578788889999999999999999999988877654322 2222 355555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
..... ..+.+..+....+ .+++++.+++-+|.||.+.+ +++|.++|+++|.++++|.+++. +. .+
T Consensus 124 ~~~~~--~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~g~~~~vDa~~~~---g~-~~- 188 (377)
T d1vjoa_ 124 KPWGE--VFSLEELRTALET-----HRPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTSL---GG-VP- 188 (377)
T ss_dssp CCTTC--CCCHHHHHHHHHH-----HCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTT---TT-SC-
T ss_pred cCCCC--cccchhhhhhhhc-----Ccceeeeeeeeeccceeeec---hhhhhhhhhhccceEEEecchhh---hh-hh-
Confidence 44322 3445555555443 27888999999999999999 88888999999999999999963 22 11
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh------------------h---c-CCC
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS------------------S---F-GLV 310 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~------------------~---~-~~~ 310 (483)
.++. ..+..+++.|..|.++.|+ .+|+++.. +...+...... . . ...
T Consensus 189 ~~~~---------~~~~d~~~~s~~K~~~gp~-g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (377)
T d1vjoa_ 189 IFLD---------AWGVDLAYSCSQKGLGCSP-GASPFTMS-SRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTA 257 (377)
T ss_dssp CCTT---------TTTCSEEECCSSSTTCSCS-SCEEEEEC-HHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCC
T ss_pred hccc---------ccccceeeecccccccCCC-EEEEecch-hhHHhhhhccCCCCcceeeccchhhhccCccccccccc
Confidence 1221 2345567889999875332 36676663 43333221110 0 0 111
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCC---ceEEEeeecCchhhccChHHHHHHHH
Q 011570 311 SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSN---AGLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 311 s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~---~g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
+......+..+... ....-.+....+.+++.+++.+.+.+.++....+. ....+.+.+|+..+. .++..
T Consensus 258 ~~~~~~~l~~~~~~--~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~rs~~v~~~~~p~~~~~------~~l~~ 329 (377)
T d1vjoa_ 258 PINLYYALREALRL--IAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDG------KAVAR 329 (377)
T ss_dssp CHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCTTCCH------HHHHH
T ss_pred ceechhhhHHHHhh--hhhcCchHHHHHHHHHhhhhhhhhhccCceeecChHhcCCeEEEEECCCCCCH------HHHHH
Confidence 11121222222111 01112345556667777888888887776544221 122455666654332 37788
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCEEEEE-ecc-CCHHHHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSPGSSFHCPNPGWFRVC-FAN-MDDRTMEIALSRITSFML 435 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~f~~~~~~~iRis-~~~-~~~e~l~~~l~~L~~~l~ 435 (483)
.|++++||.+..|... ..++.|||+ ++. .++|++++++++|+++++
T Consensus 330 ~L~~~~gI~v~~G~~~--~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 330 RLLNEHNIEVGGGLGE--LAGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp HHHHHHCEECEECCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCEEEecCccc--ccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 8888899999988643 245789999 465 478999999999998874
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.68 E-value=3e-16 Score=156.25 Aligned_cols=287 Identities=9% Similarity=0.043 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh------cCCCCeEEEeCCCCcChHHHHhhhcCcEEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL------ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVP 170 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~ 170 (483)
.+.|+.+|++++ +++++|++|.++|+++..++... ..+|+.|++.+-.|.+........ +.++..
T Consensus 73 e~~R~~iA~llg--------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~ 143 (404)
T d1qz9a_ 73 ERLGNRLATLIG--------ARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG-LADMLQ 143 (404)
T ss_dssp HHHHHHHHTTTT--------CCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHHhC--------CCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh-hheeee
Confidence 467888888876 68999999999999998876432 467888888887776544333332 333222
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCC
Q 011570 171 VVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKES 250 (483)
Q Consensus 171 v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~ 250 (483)
++.+. ....+++.+++++. +++++|++++.+|.||.+.+ +++|+++|+++|+++++|.++.. +. .
T Consensus 144 ~~~~~--~~~~~~~~~~~~i~------~~T~lV~i~~v~~~tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~---g~-~ 208 (404)
T d1qz9a_ 144 QGYTL--RLVDSPEELPQAID------QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSA---GA-V 208 (404)
T ss_dssp SSCEE--EEESSGGGHHHHCS------TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TT-S
T ss_pred eceec--cccccchhHHHhcC------CCceEEEEecccccccceec---HHHHhccccccccceeEEeeccc---cc-c
Confidence 22221 12356778888775 48999999999999999999 88889999999999999999973 22 2
Q ss_pred CcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHH-----------------------hhh-
Q 011570 251 SFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARK-----------------------MSS- 306 (483)
Q Consensus 251 ~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~-----------------------~~~- 306 (483)
+ ..+... +..+++.|.+|.++.+.--.|+++..+.. .+.+.. ...
T Consensus 209 ~-~~~~~~---------~~d~~~~s~~K~~~~~~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (404)
T d1qz9a_ 209 P-VDLHQA---------GADYAIGCTYKYLNGGPGSQAFVWVSPQL-CDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARY 277 (404)
T ss_dssp C-CCHHHH---------TCSEEEECSSSTTCCCTTCCCEEEECTTT-TTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGG
T ss_pred c-cccccc---------cceEEEEechhhcccCCceEEEEEechhh-hhhCCccccccCCccccccccccccccccchhh
Confidence 2 333333 34466788899875333335777774332 211110 000
Q ss_pred -cCCCChHHHH---HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCceeecCC-----ceEEEeeecCchhhc
Q 011570 307 -FGLVSSQTQH---LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS-QVGIGCLKSN-----AGLFLWMDLHHLLKE 376 (483)
Q Consensus 307 -~~~~s~~~q~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~-~~gi~~~~~~-----~g~f~~~~l~~~~~~ 376 (483)
.+..+..... .....+..... ..+++....+......+...+. ..|++++.|. ++ ++-+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~-~vsf~~~~---- 350 (404)
T d1qz9a_ 278 LCGTQPITSLAMVECGLDVFAQTDM--ASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGS-HVSFEHPE---- 350 (404)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCS-EEEEECTT----
T ss_pred hhhhccchhHHHHHHHHHHHHHhhH--HHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceee-EEEEecCC----
Confidence 0112222222 22223332211 1222222333333333333333 3477776432 33 55566653
Q ss_pred cChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEec--cCCHHHHHHHHHHHHHHHHHh
Q 011570 377 QTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFA--NMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 377 ~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~--~~~~e~l~~~l~~L~~~l~~~ 437 (483)
..++.+.|. +.||.+... .++.||||++ +.|+++++.++++|++++++.
T Consensus 351 -----~~~v~~~L~-~~gi~~~~r------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~ 401 (404)
T d1qz9a_ 351 -----GYAVIQALI-DRGVIGDYR------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 401 (404)
T ss_dssp -----HHHHHHHHH-TTTEECEEE------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHH-HCCCEEeec------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 225566654 669975311 2468999996 369999999999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.68 E-value=4.2e-15 Score=146.96 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHH--HHhhhcCcEEEEeec
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDR--DLRWRTGVQLVPVVC 173 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~--~~~~~~G~~~~~v~~ 173 (483)
.+.|+.++++++ ++.. .|+++.|+|.+++.++..++.+|+.|++....+.+... ..... +...+.+..
T Consensus 53 ~~~r~~L~~ll~--------~~~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 123 (388)
T d2ch1a1 53 DEVKDGLRYIFQ--------TENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEMSERY-GADVRTIEG 123 (388)
T ss_dssp HHHHHHHHHHHT--------CCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCeEEEEcCcHHHHHHHHHHHhccccccccccccccccccchhhhhhh-ccccccccc
Confidence 456666666665 3334 46667789999999999999999999988777644332 23333 777777776
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.+.. ..+.+..+...... +++++++++-+|.||...+ ++++.++|+++|.++++|.+.+. .. .+ .
T Consensus 124 ~~~~--~~~~~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~~~~~~vD~~ss~---g~-~p-i 188 (388)
T d2ch1a1 124 PPDR--PFSLETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVASL---CG-VP-F 188 (388)
T ss_dssp CTTS--CCCHHHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTB---TT-BC-C
T ss_pred cccc--ccchhhhhhhhccC-----Ccceeeeeecccccccccc---hhhhcchhccccceeeeeeeecc---cc-cc-c
Confidence 5533 45667777766543 7899999999999999999 67778888899999999999873 33 22 2
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhh-------------------------hc
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMS-------------------------SF 307 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~-------------------------~~ 307 (483)
.+. ..+..+++.|-.|.++ .+| +|+++..+..+ +...... ..
T Consensus 189 d~~---------~~~~d~~~~s~~K~~~gp~G--~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (388)
T d2ch1a1 189 YMD---------KWEIDAVYTGAQKVLGAPPG--ITPISISPKAL-DVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYH 256 (388)
T ss_dssp CTT---------TTTCCEEECCCC-CCCCCSS--CEEEEECHHHH-HHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCC
T ss_pred chh---------ccCceEEEEccccccCCCCe--EEEEeccHHHH-HhhhcccCccccccccchhhhhhhcccccccccC
Confidence 222 2355677889999874 344 67777743333 2221100 00
Q ss_pred CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC----CceEEEeeecCchhhccChHHHH
Q 011570 308 GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS----NAGLFLWMDLHHLLKEQTYEAEM 383 (483)
Q Consensus 308 ~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~----~~g~f~~~~l~~~~~~~~~~~~~ 383 (483)
+..+.....++...+.... ..-........++........+...++....+ .+...+.+.+|+..+. .
T Consensus 257 ~t~~~~~i~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~~~~p~g~~~------~ 328 (388)
T d2ch1a1 257 HTVASNLIFALREALAQIA--EEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMIPKGVDW------W 328 (388)
T ss_dssp CCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEEECCTTCCH------H
T ss_pred ccchHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhhhhhcccccccCCHHHhCCeEEEEECCCCCCH------H
Confidence 1112222222222222110 01112222222333333344443333332211 1223556778764432 3
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCEEEEE-eccC-CHHHHHHHHHHHHHHHHHh
Q 011570 384 ALWRVIINEVKLNVSPGSSFHCPNPGWFRVC-FANM-DDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 384 ~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis-~~~~-~~e~l~~~l~~L~~~l~~~ 437 (483)
++...|++++||.|.+|... ...+.|||+ ++.. +.|+++.++++|+++|+..
T Consensus 329 ~l~~~l~~~~gI~v~~G~~~--~~~~~~RIs~~g~~~t~edI~~ll~alke~L~~~ 382 (388)
T d2ch1a1 329 KVSQYAMNNFSLEVQGGLGP--TFGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 382 (388)
T ss_dssp HHHHHHHHHHCBCCBCCCGG--GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCEEEeCCCcc--ccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhh
Confidence 77788888889999998643 345689999 6754 7899999999999999874
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=2.4e-14 Score=140.71 Aligned_cols=199 Identities=15% Similarity=0.170 Sum_probs=137.2
Q ss_pred CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
.+..++++++..|+..++.+++++||+|++....|++....+... .|+++..+..++ ..+..++.++
T Consensus 73 ~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~------~~~~~~~~~~---- 142 (421)
T d2ctza1 73 GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE------RPEEFLALTD---- 142 (421)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC------CHHHHHHHCC----
T ss_pred CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceeccccc------CcchhccccC----
Confidence 467888999999999999999999999999999998776655422 488888765431 2344444443
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEec
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYS 275 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S 275 (483)
+++++|++.+|.|||..+.+ +++|+++|+++|+++|+|..++..-+.. . + + ..+-.|++.|
T Consensus 143 --~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~-~---P---l-------~~GaDiVvhS 203 (421)
T d2ctza1 143 --EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL-R---P---L-------AWGAALVTHS 203 (421)
T ss_dssp --TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC-C---G---G-------GGTCSEEEEE
T ss_pred --CCceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEecccccccceec-c---c---c-------ccCCcEEEEe
Confidence 48999999999999999999 8899999999999999999986211222 1 2 1 1245588999
Q ss_pred CccccCCCC-ceEEEEEecChH-------------------------------HHHHH-HHhhhc-CCCChHHHHHHHHh
Q 011570 276 LSKDMGFPG-FRVGIIYSYNDQ-------------------------------VVSCA-RKMSSF-GLVSSQTQHLIATM 321 (483)
Q Consensus 276 ~SK~~g~~G-lRiG~li~~~~~-------------------------------l~~~~-~~~~~~-~~~s~~~q~~~~~~ 321 (483)
.+|.+|--| +=.|.++..++. +.+.. ...+.. ..+++.....+..-
T Consensus 204 ~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l~~rg 283 (421)
T d2ctza1 204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG 283 (421)
T ss_dssp TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH
T ss_pred chhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHHHhcC
Confidence 999986333 445676653321 11110 111223 33566665556555
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
++. +.-+.++..++...+.+.|+++
T Consensus 284 l~T-------L~lRm~~~~~nA~~vA~~L~~h 308 (421)
T d2ctza1 284 MET-------LSLRAERHVENTLHLAHWLLEQ 308 (421)
T ss_dssp HTT-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred Ccc-------hhhHHHHHHHHHHHHHhhhccC
Confidence 554 3444555677778888888887
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.66 E-value=5.8e-14 Score=137.39 Aligned_cols=218 Identities=15% Similarity=0.211 Sum_probs=148.3
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhh---hcC
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRW---RTG 165 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~---~~G 165 (483)
.|+.. | .+-++++.+.+....| .+..++++++..|+..++.+++.+||+|++.+..|++....+.. ..|
T Consensus 52 ~YsR~-~-nPT~~~le~~la~LEg------~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g 123 (394)
T d1e5ea_ 52 IYTRL-G-NPTVSNLEGKIAFLEK------TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFG 123 (394)
T ss_dssp CBTTT-C-CHHHHHHHHHHHHHHT------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred eecCC-C-CHHHHHHHHHHHHHhC------CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccc
Confidence 46554 2 3344444444443332 56788899999999999999999999999999999776554332 148
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHh-hcCcEEEEccccccC
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN-EKNIHLVCDEIYAAT 244 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~-~~~~~iI~Deay~~~ 244 (483)
+++..++.. |++.+++++++ ++++|++..|.|||..+.+ ++++++.++ ++|+++|+|..++..
T Consensus 124 i~~~~~d~~-------d~~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP 187 (394)
T d1e5ea_ 124 IQVDFINTA-------IPGEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSP 187 (394)
T ss_dssp CEEEEECTT-------STTHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCT
T ss_pred eeeeccCCC-------CHHHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCc
Confidence 998888743 56778888764 8999999999999999999 666776554 568999999998643
Q ss_pred ccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHH--hhh-cC-CCChHHHHHHH
Q 011570 245 VFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARK--MSS-FG-LVSSQTQHLIA 319 (483)
Q Consensus 245 ~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~--~~~-~~-~~s~~~q~~~~ 319 (483)
.+.. + .. .+-.|+++|.+|.++- ..+-.|.++++ +......+. ... .+ .+++.....+.
T Consensus 188 ~~~~-----P-l~---------~GaDiVvhS~TKy~~GhsDv~~G~v~~~-~~~~~~~~~~~~~~~~G~~lsp~~a~ll~ 251 (394)
T d1e5ea_ 188 MITN-----P-VD---------FGVDVVVHSATKYINGHTDVVAGLICGK-ADLLQQIRMVGIKDITGSVISPHDAWLIT 251 (394)
T ss_dssp TTCC-----G-GG---------GTCSEEEEETTTTTTCSSCCCCEEEEEC-HHHHHHHHHTCCCCCCCCCCCHHHHHHHH
T ss_pred ccCC-----c-hh---------cCCCEEEechhhhcCCCcccccccccch-hhHHHHHHHHHHHHhhCCCCChHHHHHHH
Confidence 2221 1 11 2445889999998752 33556777774 444333322 222 23 35666666666
Q ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 320 TMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.-++. +..+.++..++...+.+.|+++
T Consensus 252 rgl~T-------L~lRm~r~~~nA~~lA~~L~~h 278 (394)
T d1e5ea_ 252 RGLST-------LNIRMKAESENAMKVAEYLKSH 278 (394)
T ss_dssp HHHTT-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhchh-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 65655 3444556677888889999887
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.66 E-value=1.3e-14 Score=139.04 Aligned_cols=207 Identities=18% Similarity=0.252 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEeec
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPVVC 173 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v~~ 173 (483)
.|.+.+|++.+ .+..++++++..|+..++.+++++||+|+++.+.|++....+ +. .|+++..++.
T Consensus 2 aLE~~la~Leg----------~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~-~gi~~~~~d~ 70 (331)
T d1pffa_ 2 ALEGKIAKLEH----------AEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRK-FGVEVDFIDM 70 (331)
T ss_dssp HHHHHHHHHHT----------CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHH-TTCEEEEECT
T ss_pred HHHHHHHHHhC----------CCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHh-cCeEEEEecc
Confidence 46777887754 567889999999999999999999999999999997765554 33 4999888764
Q ss_pred CCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHH-HhhcCcEEEEccccccCccCCCCCc
Q 011570 174 DSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSF-INEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 174 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~-a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
. |++.+++++++ ++++|++.+|.||+..+.+ +++++++ ++++|+++|+|..++...+.. +
T Consensus 71 ~-------d~~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~--p- 131 (331)
T d1pffa_ 71 A-------VPGNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN--P- 131 (331)
T ss_dssp T-------STTHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC--G-
T ss_pred c-------chhhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeecccccccccc--c-
Confidence 3 67788887753 8999999999999999999 6666665 467899999999986432221 1
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCC-CCceEEEEEecChHHHHHHHH-hhh-cC-CCChHHHHHHHHhcCChhHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGF-PGFRVGIIYSYNDQVVSCARK-MSS-FG-LVSSQTQHLIATMLSDDQFV 328 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~-~GlRiG~li~~~~~l~~~~~~-~~~-~~-~~s~~~q~~~~~~l~~~~~~ 328 (483)
+ ..+-.|++.|.+|.++- ...-.|.+++.++........ ... .+ .+++.....+..-++
T Consensus 132 -----l-------~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~----- 194 (331)
T d1pffa_ 132 -----L-------DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL----- 194 (331)
T ss_dssp -----G-------GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH-----
T ss_pred -----c-------ccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHH-----
Confidence 1 12345789999999853 334456777743433332221 122 22 244444444433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 329 EKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 329 ~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
.+..+.++..++...+.+.|+++
T Consensus 195 --Tl~~Rm~~~~~nA~~lA~~L~~h 217 (331)
T d1pffa_ 195 --TLDMRVKRAAENAQKVAEFLHEH 217 (331)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHHHHHHhhhhC
Confidence 24555666778888889999887
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.8e-14 Score=138.57 Aligned_cols=197 Identities=13% Similarity=0.061 Sum_probs=140.1
Q ss_pred CCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cCcEEEEeecCCCCCcccCHHHHHHHHHHHHh
Q 011570 119 PDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TGVQLVPVVCDSSNDFKVTMEALEAAYEKAQE 195 (483)
Q Consensus 119 ~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~ 195 (483)
.+..++++++..|+..++.+++++||+|++....|++....+... .|+++..+... |.+.++++++
T Consensus 73 ~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~-------d~~~~~~~i~---- 141 (391)
T d1cl1a_ 73 GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-------IGADIVKHLQ---- 141 (391)
T ss_dssp CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-------CGGGGGGTCC----
T ss_pred CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccCc-------cccccccccc----
Confidence 578999999999999999999999999999999998877765532 48888776632 5667777665
Q ss_pred cCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEE
Q 011570 196 SNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIV 273 (483)
Q Consensus 196 ~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~ 273 (483)
+++++|++.+|.||+..+.+ +++++++|++ +|+++|+|..++...+.. + + +..-.|++
T Consensus 142 --~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~-----P---l-------~~GaDivv 201 (391)
T d1cl1a_ 142 --PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK-----A---L-------DFGIDVSI 201 (391)
T ss_dssp --TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC-----G---G-------GGTCSEEE
T ss_pred --cccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhc-----c---c-------ccccceEE
Confidence 38999999999999999999 6666776655 599999999996532221 1 1 12445889
Q ss_pred ecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc-CCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011570 274 YSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF-GLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLS 351 (483)
Q Consensus 274 ~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~-~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 351 (483)
.|.+|.++--| .=.|.++.+++............ ..+++.....+..-++. +..+.++..++...+.+.|+
T Consensus 202 hS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~nA~~vA~~L~ 274 (391)
T d1cl1a_ 202 QAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHESSLKVAEWLA 274 (391)
T ss_dssp EETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHHHHHHHHHHH
Confidence 99999985322 44577777555444333333333 33566655555555554 34445556777788888998
Q ss_pred cC
Q 011570 352 QV 353 (483)
Q Consensus 352 ~~ 353 (483)
++
T Consensus 275 ~h 276 (391)
T d1cl1a_ 275 EH 276 (391)
T ss_dssp TC
T ss_pred hc
Confidence 87
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=1.3e-14 Score=143.14 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=172.1
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhc---CCCCeEEEeCCCCcChH--HHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLA---DPGDAFLVPTPYYPGFD--RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYE 191 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~---~~gd~Vlv~~P~y~~~~--~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~ 191 (483)
.+++.|++|+|+|++++.++..++ +|||+|++....+.... ...+.. |..+..+...+ .+...+.+.+++.+.
T Consensus 55 ~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 132 (382)
T d2bkwa1 55 SKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSY-GAQVDVVRPLK-IGESVPLELITEKLS 132 (382)
T ss_dssp GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHT-TCEEEEECCSS-TTSCCCHHHHHHHHH
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccc-ccccccccccC-CCCccchhHHHHHhh
Confidence 467789999999999999999986 67999999887664432 223333 77776655332 234578888888876
Q ss_pred HHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhh--cCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCe
Q 011570 192 KAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINE--KNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNL 269 (483)
Q Consensus 192 ~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~--~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 269 (483)
+ .+++++++++.+|.||...+.+. +.+.|++ +++++++|.+.+. +. .+ .++. ..+.
T Consensus 133 ~-----~~~~~v~~~~~~~~tg~~~~~~~---~~~~~~~~~~~~~~~vDa~qs~---g~-~p-id~~---------~~gi 190 (382)
T d2bkwa1 133 Q-----NSYGAVTVTHVDTSTAVLSDLKA---ISQAIKQTSPETFFVVDAVCSI---GC-EE-FEFD---------EWGV 190 (382)
T ss_dssp H-----SCCSEEEEESEETTTTEECCHHH---HHHHHHHHCTTSEEEEECTTTT---TT-SC-CCTT---------TTTC
T ss_pred h-----ccchheeeeeccccccccccchh---hhhhccccccceeeeeeccccc---cc-cc-cccc---------ccCe
Confidence 5 37889999999999999999544 4444444 4699999999873 33 22 2222 2245
Q ss_pred EEEEecCcccc-CCCCceEEEEEecChHHHHHHHH----------------------h-----hhcCCCChHHHHHHHHh
Q 011570 270 IHIVYSLSKDM-GFPGFRVGIIYSYNDQVVSCARK----------------------M-----SSFGLVSSQTQHLIATM 321 (483)
Q Consensus 270 vi~~~S~SK~~-g~~GlRiG~li~~~~~l~~~~~~----------------------~-----~~~~~~s~~~q~~~~~~ 321 (483)
.+++.|-.|.+ |.+| +|+++..++.+...... . ...++.+.....++..+
T Consensus 191 D~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~a 268 (382)
T d2bkwa1 191 DFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVA 268 (382)
T ss_dssp SEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHH
T ss_pred eEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHH
Confidence 57788999998 5677 79999854433221100 0 00122333333444444
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee---cCC--ceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 322 LSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL---KSN--AGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 322 l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~---~~~--~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
|+. ....-.....++.++..+++...+.+. ++... ++. ....+.+.+++. .++.. +|+++||
T Consensus 269 L~~--~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~~~---------~~~~~-~L~~~gi 336 (382)
T d2bkwa1 269 LKE--ILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVADP---------PDVIA-FLKSHGV 336 (382)
T ss_dssp HHH--HHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECSCH---------HHHHH-HHHHTTE
T ss_pred HHH--HHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCCCH---------HHHHH-HHHHCCe
Confidence 422 111123334444555666777776653 33222 111 112334555542 24444 4567899
Q ss_pred EeeCCCCCCCCCCCEEEEE-eccC-CHHHHHHHHHHHHHHHHHhh
Q 011570 396 NVSPGSSFHCPNPGWFRVC-FANM-DDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis-~~~~-~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+..|.... .+.+.+||+ +|.. ++++++.+++.|..+.+.++
T Consensus 337 ~i~~G~~~~-~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 337 VIAGGIHKD-IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp ECBCCCCTT-TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred EEECCCChh-hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 999885321 245789999 6653 56777777777765554443
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.2e-14 Score=146.02 Aligned_cols=321 Identities=11% Similarity=0.009 Sum_probs=206.4
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHHHHhc-----------CCC-CeEEEeCCCCcChHHHH
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVAFCLA-----------DPG-DAFLVPTPYYPGFDRDL 160 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~-----------~~g-d~Vlv~~P~y~~~~~~~ 160 (483)
+...++...+.+++.+.+|.+-... ...=.+|+|+++++...+.+.. .++ ..+++....|..+..++
T Consensus 89 P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa 168 (450)
T d1pmma_ 89 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFA 168 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHH
Confidence 3457899999999998877211111 1235899999999998876642 122 35778888899898888
Q ss_pred hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHH---HHhhcCcEEEE
Q 011570 161 RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVS---FINEKNIHLVC 237 (483)
Q Consensus 161 ~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~---~a~~~~~~iI~ 237 (483)
+.. |+++..+|.++ .++.+|++.|++++.+ ++.+|+.+.++|.||.+-+.+++..|++ .|+++|+++++
T Consensus 169 ~~~-gi~~~~v~~~~-~~~~~d~~~L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHV 240 (450)
T d1pmma_ 169 RYW-DVELREIPMRP-GQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 240 (450)
T ss_dssp HHT-TCEEEECCCBT-TBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHc-CCCceEeeecC-CCCcCcHHHHHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEe
Confidence 886 99999999875 3589999999999864 7888999999999999999887666654 46789999999
Q ss_pred ccccccCc--cCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHh---------hh
Q 011570 238 DEIYAATV--FTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKM---------SS 306 (483)
Q Consensus 238 Deay~~~~--~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~---------~~ 306 (483)
|.+|+++. |.. +...-... ......+..|.+|.++ ....+||++..++......... ..
T Consensus 241 DAA~gG~~~p~~~-~~~~~~~~--------~~~aDSi~~s~HK~~~-~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~ 310 (450)
T d1pmma_ 241 DAASGGFLAPFVA-PDIVWDFR--------LPRVKSISASGHKFGL-APLGCGWVIWRDEEALPQELVFNVDYLGGQIGT 310 (450)
T ss_dssp ECTTGGGTHHHHC-TTCCCSTT--------STTEEEEEEETTTTTC-CCSSCEEEEESSGGGSCGGGCEEEEETTEEEEE
T ss_pred ehhhccceeeeec-hhhhhhhc--------ccceeEeecChhhccC-CCCCeeEEEecChhhhhhhcccccCcCCCCcCC
Confidence 99997653 222 11111111 1234556779999765 5566899999655432111000 00
Q ss_pred c-CCCCh-----HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC---C-ceEEEeeecCchhh
Q 011570 307 F-GLVSS-----QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS---N-AGLFLWMDLHHLLK 375 (483)
Q Consensus 307 ~-~~~s~-----~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~---~-~g~f~~~~l~~~~~ 375 (483)
+ ...+. ..+.+....+. .+-+++..++..+..+++.+.|++. ++++..+ . +-..+.+++.....
T Consensus 311 ~~~~~sr~~~~~~~~~~~l~~~G-----~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~ 385 (450)
T d1pmma_ 311 FAINFSRPAGQVIAQYYEFLRLG-----REGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED 385 (450)
T ss_dssp CCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECTTCC
T ss_pred CcccCccchHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCCccc
Confidence 1 01111 11222222222 2234566667778889999999988 5776532 2 22245566643211
Q ss_pred ccChHHHHHHHHHHHHhcCeEeeCCCCCC-CCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhhhc
Q 011570 376 EQTYEAEMALWRVIINEVKLNVSPGSSFH-CPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNVEA 440 (483)
Q Consensus 376 ~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~-~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~~~ 440 (483)
..+ ...++...|. +.|..|....... ......+|+.+.. .+++.++.+++.|+++++..++.
T Consensus 386 -~~~-~~~~l~~~L~-~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~l~~~ 449 (450)
T d1pmma_ 386 -PGY-TLYDLSERLR-LRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDH 449 (450)
T ss_dssp -CSS-CHHHHHHHHH-TTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCC-CHHHHHHHHH-HcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 111 1235666655 5686653221111 1223479999966 59999999999999999988764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.65 E-value=1.1e-14 Score=147.37 Aligned_cols=175 Identities=15% Similarity=0.055 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEE--eec
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVP--VVC 173 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~--v~~ 173 (483)
+.++++.+|++++ ..+.+++++|++.++..++.++++|||+|+++..+|.+.......+.+...+. .+.
T Consensus 68 i~eae~~~A~~~g---------a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~ 138 (462)
T d1c4ka2 68 AVAAEKHAARVYN---------ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 138 (462)
T ss_dssp HHHHHHHHHHHTT---------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHhC---------CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccc
Confidence 6789999999987 22345666778888888899999999999999999988877665443444443 333
Q ss_pred CCCCC-c-----ccCHHHHHHHHHH---HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccC
Q 011570 174 DSSND-F-----KVTMEALEAAYEK---AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAAT 244 (483)
Q Consensus 174 ~~~~~-~-----~~d~~~l~~~i~~---~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~ 244 (483)
++.+. . .++.+.++..+.. ......+++.+++...+|-+|.+.+ +++|+++|+++|+++++|++|+..
T Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~ 215 (462)
T d1c4ka2 139 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGY 215 (462)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCG
T ss_pred ccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhhcc
Confidence 43221 1 2233333322210 0112234555555555667999999 888999999999999999999754
Q ss_pred ccCCCCCc-chHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 245 VFTKESSF-VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 245 ~~~~~~~~-~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
.... +.. .+....... ........+++.|++|++|.++
T Consensus 216 ~~~~-~~~~~~~~~~g~~-~~~~~~~D~~~~S~HK~lg~~~ 254 (462)
T d1c4ka2 216 EQFI-PMMRNSSPLLIDD-LGPEDPGIIVVQSVHKQQAGFS 254 (462)
T ss_dssp GGSS-GGGGGGCTTSCCC-CCTTSCEEEEEECHHHHSSCCT
T ss_pred cccc-CcCCcchhhcccc-ccccCCccEEEEecCccccccc
Confidence 2211 110 111111000 0001245788999999997543
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=6.1e-14 Score=137.01 Aligned_cols=217 Identities=15% Similarity=0.159 Sum_probs=145.4
Q ss_pred cCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhh---cC
Q 011570 89 IFQDYHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWR---TG 165 (483)
Q Consensus 89 ~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~---~G 165 (483)
.|+.. | .+-++.+.+.+....| .+..++++++..++..++ .++.+||+|++....|++....+... .|
T Consensus 48 ~YsR~-g-nPT~~~lE~~la~LE~------~~~a~~~sSGmaAi~~~l-~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 48 EYSRS-Q-NPNRENLERAVAALEN------AQYGLAFSSGSATTATIL-QSLPQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CBTTT-C-CHHHHHHHHHHHHHTT------CSEEEEESCHHHHHHHHH-HTSCSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred eeeCC-C-ChHHHHHHHHHHHHhC------CceEEEecCchhHHHhhh-hcccCCCeeeeeeeecccchhhhhhhhhccc
Confidence 46654 3 3344444444444322 456777778788887654 66789999999999998877766543 36
Q ss_pred cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHh----hcCcEEEEcccc
Q 011570 166 VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN----EKNIHLVCDEIY 241 (483)
Q Consensus 166 ~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~----~~~~~iI~Deay 241 (483)
+++..+. .+.++++++++ +++++|++.+|.||+..+.+ +++|+++|+ ++|+++|+|..|
T Consensus 119 i~~~~~~--------~~~~~~~~~i~------~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~ 181 (393)
T d1n8pa_ 119 VETSFTN--------DLLNDLPQLIK------ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTF 181 (393)
T ss_dssp SCCEEES--------SHHHHHHHHSC------SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTT
T ss_pred ceeEEee--------cchHHHHHHhh------hhcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCc
Confidence 6665543 24567777765 48999999999999999999 666666666 789999999998
Q ss_pred ccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC-CCCceEEEEEecChHHHHHHHHhhh-cC-CCChHHHHHH
Q 011570 242 AATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG-FPGFRVGIIYSYNDQVVSCARKMSS-FG-LVSSQTQHLI 318 (483)
Q Consensus 242 ~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~li~~~~~l~~~~~~~~~-~~-~~s~~~q~~~ 318 (483)
+...+.. + + ..+-.|++.|.+|.++ -..+-.|.++..++.+.+.++.... ++ .+++.....+
T Consensus 182 atP~~~~--P------l-------~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll 246 (393)
T d1n8pa_ 182 LSPYISN--P------L-------NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLT 246 (393)
T ss_dssp THHHHCC--G------G-------GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cCcccCC--c------h-------hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHH
Confidence 6432221 1 1 1244588999999985 2336678888767776665554433 33 3566666666
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV 353 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~ 353 (483)
..-++. +..+.++..++...+.+.|+..
T Consensus 247 ~rgl~T-------l~lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 247 HRGLKT-------LHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HHHHTT-------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhCCcc-------hhhHHHHHHHHHHHHHHHHHhc
Confidence 665555 2334455566777788888654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.3e-14 Score=143.27 Aligned_cols=362 Identities=10% Similarity=-0.017 Sum_probs=196.0
Q ss_pred CCCCCCcccccch--hhhhc--HHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCc
Q 011570 42 TKNPNGVIQMGLA--ENLLC--HELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITF 117 (483)
Q Consensus 42 ~~~~~~~i~l~~~--~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~ 117 (483)
+.....+||+..+ .+.++ .+.+.+++.+.... ...........+....+|+.+.+.... -
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~-------------~~~~~~~~~~~~~~~~la~~l~~~~p~---~ 99 (425)
T d1sffa_ 36 DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKK-------------LSHTCFQVLAYEPYLELCEIMNQKVPG---D 99 (425)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTT-------------CSCCCTTTEECHHHHHHHHHHHHHSSC---S
T ss_pred eCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhh-------------cCCcccccccCcHHHHHHHHHHhhhhh---c
Confidence 3445678888776 33343 45555555442111 111111112245556677777655320 1
Q ss_pred CCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcCc-------------EEEEeec--CCCCCcc
Q 011570 118 DPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTGV-------------QLVPVVC--DSSNDFK 180 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G~-------------~~~~v~~--~~~~~~~ 180 (483)
..+.+++++++++++..++.... ....+|+...-+|.+.........|. .....+. ...+...
T Consensus 100 ~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (425)
T d1sffa_ 100 FAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISE 179 (425)
T ss_dssp SCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCH
T ss_pred ccceeeeeccccchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccc
Confidence 23579999999999999886642 22357888888887655433322121 1111221 1111111
Q ss_pred cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhh
Q 011570 181 VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEII 259 (483)
Q Consensus 181 ~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~ 259 (483)
.........+........++.+|++..-....|. ..+.+.+++|.++|++||+++|.||++.++...+ .+.....+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g--~~~a~~~~g 257 (425)
T d1sffa_ 180 DDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG--TLFAMEQMG 257 (425)
T ss_dssp HHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSSGGGGTT
T ss_pred hhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcc--hhhHHHhcC
Confidence 1111111122111122234555555433434565 5688899999999999999999999998743332 222222221
Q ss_pred hhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHHHHhcCChhHHHHHHHHHHH
Q 011570 260 DQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLIATMLSDDQFVEKFIAESAK 337 (483)
Q Consensus 260 ~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~ 337 (483)
- .+| |+ +++|.+| .|+.+|.+++ ++.+.+.+.... ..+..++++.+++.+.|+--.. .+..++...
T Consensus 258 v-----~PD--i~--~~gK~l~-gG~P~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~-~~~~~~~~~ 325 (425)
T d1sffa_ 258 V-----APD--LT--TFAKSIA-GGFPLAGVTG-RAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ-ENLLQKAND 325 (425)
T ss_dssp S-----CCS--EE--EECGGGG-TSSCCEEEEE-EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred C-----Ccc--ce--ecccccC-CCcceEEEEE-cHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH-hhhhhhhhh
Confidence 1 223 22 6899998 8999999998 455554432211 1133567777766666543110 111222222
Q ss_pred HHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh--hccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe
Q 011570 338 RIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL--KEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF 415 (483)
Q Consensus 338 ~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~--~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~ 415 (483)
.-...++.+.+.+++.++......-|++..+.+.... ..........+...+++ +||++.++.. ..+.+|++.
T Consensus 326 ~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~g~----~~n~i~~~P 400 (425)
T d1sffa_ 326 LGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGP----YYNVLRILV 400 (425)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEEST----TSCEEEECC
T ss_pred hhhhhhhhhhhhHhhCCceEEEEccccEEEEEEeccCccCCccHHHHHHHHHHHHH-CCCEEeccCC----CCCEEEEEC
Confidence 2222233344444555543333333456666664321 11111223467777775 5999887532 245799998
Q ss_pred cc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 416 AN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 416 ~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+. ++++++++++++|++++++.+
T Consensus 401 pL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 401 PLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 65 599999999999999998875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.64 E-value=1.3e-14 Score=146.64 Aligned_cols=316 Identities=15% Similarity=0.157 Sum_probs=207.7
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCC-----cCCCcEEEeCChhHHHHHHHHHhcC----------CC---------CeEEEe
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRIT-----FDPDRIVMSGGATGAHETVAFCLAD----------PG---------DAFLVP 149 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~-----~~~~~i~it~G~~~al~~~~~~l~~----------~g---------d~Vlv~ 149 (483)
+...++...+.+|+.+..|..-. .....-++|+|+++++...+.+..+ +| -.|+++
T Consensus 109 p~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s 188 (476)
T d1js3a_ 109 PACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188 (476)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEec
Confidence 34578999999999999883211 1123578999999988887755321 11 147888
Q ss_pred CCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHh
Q 011570 150 TPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFIN 229 (483)
Q Consensus 150 ~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~ 229 (483)
+-+|.++..++... |..++.+|.++ ++.+|+++|++.|++..+++..+-+|+.+..++.||.+=+ +++|+++|+
T Consensus 189 ~~~H~Si~ka~~~l-Gl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp---l~~I~~i~~ 262 (476)
T d1js3a_ 189 DQAHSSVERAGLIG-GVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN---LLEVGPICH 262 (476)
T ss_dssp TTCCHHHHHHHHHH-TCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHHHHHHHH
T ss_pred ccccHHHHHHHHhc-CceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc---HHHHHHHHH
Confidence 88999999988886 99999999865 5699999999999988877777778888889999999999 888889999
Q ss_pred hcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHH-HHH------
Q 011570 230 EKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVS-CAR------ 302 (483)
Q Consensus 230 ~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~-~~~------ 302 (483)
+||+|+.+|.+|++..... ..+.....-.+ .-+ -+..+++|.++.| .-+|.++..+..... .+.
T Consensus 263 ~~~~wlHVDAA~Gg~~~~~-~~~~~~~~gi~-----~aD--Sit~d~HK~l~~P-~~~g~~l~r~~~~~~~~~~~~~~~~ 333 (476)
T d1js3a_ 263 EEDIWLHVDAAYAGSAFIC-PEFRHLLNGVE-----FAD--SFNFNPHKWLLVN-FDCSAMWVKRRTDLTGAFKLDPVYL 333 (476)
T ss_dssp HTTCEEEEECTTGGGGGGS-TTTGGGGTTGG-----GCS--EEEECHHHHSSCC-SSCEEEEESCHHHHHGGGC------
T ss_pred hcCcEEEEecccchhhhhh-cchhhhhcCCc-----ccc--eeeecCccccccC-CcceeecccchHHHHHHHhcChhhh
Confidence 9999999999998764333 22222221111 112 3345899998744 467777775543221 110
Q ss_pred -Hh----------hhcC-CC----ChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEE
Q 011570 303 -KM----------SSFG-LV----SSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLF 365 (483)
Q Consensus 303 -~~----------~~~~-~~----s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f 365 (483)
.. ..+. .. ..+...++...+.. +-+++..+...+..+++.+.+++. ++++..+..-..
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~-----~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~i 408 (476)
T d1js3a_ 334 KHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV-----KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL 408 (476)
T ss_dssp ------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHHhH-----hHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCceEE
Confidence 00 0000 00 11222233333322 224555556667778888889887 788774443335
Q ss_pred EeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc--CCHHHHHHHHHHHHHHHHHh
Q 011570 366 LWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN--MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 366 ~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~--~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.+++... + .....+.+++.++..+.+.+... .+..++|+++++ +++++++.+++.|++..++.
T Consensus 409 V~Fr~~~~---d--~~n~~l~~~l~~~G~~~~s~t~~---~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 409 VCFRLKGS---D--GLNEALLERINSARKIHLVPCRL---RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp EEEEESSC---H--HHHHHHHHHHHHHTSCBCEEEEE---TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEccCC---h--HHHHHHHHHHHhcCCEEEeeeeE---CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66676532 1 11235677777664454544321 233479999974 47889999999999887654
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=9.8e-15 Score=142.02 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=175.0
Q ss_pred cCCCcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 117 FDPDRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 117 ~~~~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
.+.+.+++++|++.++..++..++.+||+|++....+.+ +...++.. |.++..+..+... .++++.+.
T Consensus 48 ~~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~-~~~~~~~~~~~g~--~~~~~~~~------- 117 (348)
T d1iuga_ 48 TEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEA-GLVVERLDYPYGD--TPRPEDVA------- 117 (348)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECCTTC--CCCTTTSC-------
T ss_pred CCCCEEEEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhc-CcccccccccCCC--cccccccc-------
Confidence 456778999999999999999999999999988877432 22334444 8888777765432 23333321
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhc--CcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEK--NIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~--~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
..+++.|++++..+.||.+.+ +.+|.+.|+++ +.++++|.+.+ +.. .+ .++.. .+..++
T Consensus 118 --~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~l~~vDavss---~g~-~~-i~~d~---------~~iD~~ 178 (348)
T d1iuga_ 118 --KEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEGLVGADMVTS---LLV-GE-VALEA---------MGVDAA 178 (348)
T ss_dssp --CSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTCEEEEECTTT---BTT-BC-CCSGG---------GTCSEE
T ss_pred --ccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccceeechhhhc---ccc-cc-ccccc---------ccCCEE
Confidence 247889999999999999999 55666666565 57899999876 332 11 22211 234567
Q ss_pred EecCcccc-CCCCceEEEEEecChHHHH------------HHHHh---hhcCCCChHHHHHHHHhcCChhHHHHHHHHHH
Q 011570 273 VYSLSKDM-GFPGFRVGIIYSYNDQVVS------------CARKM---SSFGLVSSQTQHLIATMLSDDQFVEKFIAESA 336 (483)
Q Consensus 273 ~~S~SK~~-g~~GlRiG~li~~~~~l~~------------~~~~~---~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~ 336 (483)
+.|..|.+ |.|| +|+++.+++.+.. ..... ..+++.+.....++..+|+.. .+...+..
T Consensus 179 ~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~---~~~~~~~~ 253 (348)
T d1iuga_ 179 ASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV---LPRLEEHL 253 (348)
T ss_dssp EEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH---GGGHHHHH
T ss_pred EeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHH---HHHHhHHH
Confidence 78999998 7787 6999885443321 11111 112334444444555554321 11112222
Q ss_pred HHHHHHHHHHHHhhhcCCceeecCCc-eEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe
Q 011570 337 KRIAERHKAFTWGLSQVGIGCLKSNA-GLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF 415 (483)
Q Consensus 337 ~~l~~~~~~l~~~L~~~gi~~~~~~~-g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~ 415 (483)
+..+..+..+...+++.|+...+..- .-.+.+.+|++.+. .++...| +++||.+.+|.. ......+||+.
T Consensus 254 ~~~~~~~~~~~~~~~~~gl~~~~~~~s~~v~~~~~P~g~~~------~~~~~~l-~~~gi~i~~G~~--~l~~~~~RIg~ 324 (348)
T d1iuga_ 254 ALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPY------ARVKEAF-AQRGAVIAGGQG--PLKGKVFRLSL 324 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCH------HHHHHHH-HTTTEECEECCG--GGTTTEEEECC
T ss_pred HHHHHHHHHHhhhhhhhhhccChhhcCCeEEEEECCCCCCH------HHHHHHH-HHCCeEEEcCcc--ccCCCEEEEeC
Confidence 22233334555555666877654321 11456777765432 2555554 578999998853 33456899987
Q ss_pred c-cCCHHHHHHHHHHHHHHHHHh
Q 011570 416 A-NMDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 416 ~-~~~~e~l~~~l~~L~~~l~~~ 437 (483)
. ..+.++++.+++.|++++++.
T Consensus 325 mG~~~~~d~~~~~~~l~~~l~~~ 347 (348)
T d1iuga_ 325 MGAYDRYEALGVAGMFREVLEEI 347 (348)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Confidence 4 479999999999999999864
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.61 E-value=2.5e-13 Score=133.38 Aligned_cols=346 Identities=13% Similarity=0.110 Sum_probs=211.5
Q ss_pred CcccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC----cE
Q 011570 47 GVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD----RI 122 (483)
Q Consensus 47 ~~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~----~i 122 (483)
..|+|-..||..++.. .+++-.. +.......+.....|+...-..++.....+...+.++ .+++ +|
T Consensus 32 ~~l~LIaSEN~~S~~v-~~algS~-----l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----~~~~~~~anV 101 (470)
T d1rv3a_ 32 VGLELIASENFASRAV-LEALGSC-----LNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYG----LDPQCWGVNV 101 (470)
T ss_dssp SSEECCTTCCCCCHHH-HHHHTSG-----GGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT----CCTTTEEEEC
T ss_pred cCceEecCCCcCCHHH-HHHhcch-----hcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC----CChhhccccc
Confidence 3478888888766443 3433221 1000001112222343333234555555566666666 3332 33
Q ss_pred EEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHH----------hhhcCcEEEEeecCCCCCcccCHHHHHHHHHH
Q 011570 123 VMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDL----------RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEK 192 (483)
Q Consensus 123 ~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~----------~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~ 192 (483)
-. .+++.|...++.+|++|||+|+......+++...- ... ..+.+.++++.+ ...+|.+++++..+.
T Consensus 102 qp-~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~-~~~~~~y~v~~~-~~~IDyd~l~~~a~~ 178 (470)
T d1rv3a_ 102 QP-YSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI-FFESMAYKVNPD-TGYIDYDRLEENARL 178 (470)
T ss_dssp CC-SSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH-HSEEEEECBCTT-TCSBCHHHHHHHHHH
T ss_pred cc-cCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccc-eeEeeEEEEecc-cCcccHHHHHHHHHh
Confidence 33 45567778888999999999999887665543321 111 357788888754 467999999999887
Q ss_pred HHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEE
Q 011570 193 AQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHI 272 (483)
Q Consensus 193 ~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~ 272 (483)
. ++|+|++..-.+|- .++ .+++.++|.+.|.+++.|-+|......+ ..+++.... . .|+
T Consensus 179 ~-----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~-g~~~sPl~~---------a-Dvv 237 (470)
T d1rv3a_ 179 F-----HPKLIIAGTSCYSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVA-GVVPSPFEH---------C-HVV 237 (470)
T ss_dssp H-----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHH-TSSCCGGGT---------C-SEE
T ss_pred h-----CcceEeechhhccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccc-cccCChhhe---------e-eee
Confidence 5 88987776444542 345 6777777789999999999995443333 333333322 2 377
Q ss_pred EecCccccCCCCceEEEEEecCh--------------HHHHHHHHhhhcCCC-Ch--HHHHHHHHhcCChhHHHHHHHHH
Q 011570 273 VYSLSKDMGFPGFRVGIIYSYND--------------QVVSCARKMSSFGLV-SS--QTQHLIATMLSDDQFVEKFIAES 335 (483)
Q Consensus 273 ~~S~SK~~g~~GlRiG~li~~~~--------------~l~~~~~~~~~~~~~-s~--~~q~~~~~~l~~~~~~~~~~~~~ 335 (483)
.+|.+|+| +|-|-|.+++..+ .+.+.+.....++.. ++ -..++.+..+.. ......++.
T Consensus 238 t~tTHKtl--rGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~e--a~~~~fk~Y 313 (470)
T d1rv3a_ 238 TTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQ--AMTPEFKEY 313 (470)
T ss_dssp EEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH--HTSHHHHHH
T ss_pred eeehhhhc--cCCcceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHH--hcChHHHHH
Confidence 89999998 7889999998543 356666554433222 22 122222222221 111123555
Q ss_pred HHHHHHHHHHHHHhhhcCCceeec-CCceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEee----CCCCCCCCCCC
Q 011570 336 AKRIAERHKAFTWGLSQVGIGCLK-SNAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVS----PGSSFHCPNPG 409 (483)
Q Consensus 336 ~~~l~~~~~~l~~~L~~~gi~~~~-~~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~----pg~~f~~~~~~ 409 (483)
.+++.++.+.|.+.|.+.|+++.. ...+-.+++++... +++ ..++.+|++.||.+. |+.. .+..+.
T Consensus 314 a~qvv~NAk~La~~L~~~G~~v~~ggTdnHlvlvdl~~~g~~g-------~~ae~~Le~~gI~~Nkn~iP~D~-~~~~~s 385 (470)
T d1rv3a_ 314 QRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDG-------GRAEKVLEACSIACNKNTCPGDK-SALRPS 385 (470)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCH-------HHHHHHHHHTTEECEEECCSSCS-CTTSCC
T ss_pred HHHHHHHHHHHHHHHHhCCceeccCCCCCceEEEeecccCCcH-------HHHHHHHHHcCcEECCCcCCCCC-CCCCCC
Confidence 667788889999999999998864 23345677888542 221 346777889999875 4432 112245
Q ss_pred EEEEEecc-----CCHHHHHHHHHHHHHHHHHhh
Q 011570 410 WFRVCFAN-----MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 410 ~iRis~~~-----~~~e~l~~~l~~L~~~l~~~~ 438 (483)
.+||+... ..++++.++.+-|.++++-..
T Consensus 386 GiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~ 419 (470)
T d1rv3a_ 386 GLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTV 419 (470)
T ss_dssp EEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 69999843 477999999999988886544
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.61 E-value=8.2e-14 Score=136.45 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=198.6
Q ss_pred cccccchhhhhcHHHHHHHHhcCCCCccccccccccccccccCCCCCCcHHHHHHHHHHHHhhhCCCCCcCCC----cEE
Q 011570 48 VIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNAVAKFMGKVRGNRITFDPD----RIV 123 (483)
Q Consensus 48 ~i~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~Lr~~ia~~~~~~~g~~~~~~~~----~i~ 123 (483)
.|+|-.+||..++.. .+++... +.......++....|+...-..++.....+...+.++ ++.. +|-
T Consensus 29 ~l~LiaSEN~~S~~v-~~algS~-----l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~----~~~a~w~vNVq 98 (463)
T d2a7va1 29 GLELIASENFCSRAA-LEALGSC-----LNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD----LDPAQWGVNVQ 98 (463)
T ss_dssp SEECCTTCCCCCHHH-HHHHTSG-----GGTCCCCC------------CTHHHHHHHHHHHHHTT----CCTTTEEEECC
T ss_pred CeeEeccCCcCCHHH-HHHhcch-----hcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC----CCchhccCCcc
Confidence 478888888766443 3433221 1000000112222343333356666666666666666 4444 455
Q ss_pred EeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHh-----hh--cC--cEEEEeecCCCCCcccCHHHHHHHHHHHH
Q 011570 124 MSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLR-----WR--TG--VQLVPVVCDSSNDFKVTMEALEAAYEKAQ 194 (483)
Q Consensus 124 it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~-----~~--~G--~~~~~v~~~~~~~~~~d~~~l~~~i~~~~ 194 (483)
..+ ++.|+..++.+|++|||+|+...+..+++...-. .. .| .+.+++.+++ .+..+|.+++++.+++.
T Consensus 99 p~S-Gs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~~~- 175 (463)
T d2a7va1 99 PYS-GSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLF- 175 (463)
T ss_dssp CSS-HHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHH-
T ss_pred ccc-cHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC-CCCcCcHHHHHHHHhhc-
Confidence 555 4567788889999999999999887766542210 00 12 2445555553 34679999999999875
Q ss_pred hcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEe
Q 011570 195 ESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVY 274 (483)
Q Consensus 195 ~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~ 274 (483)
++|+|++..-.+|- .++ .+++.++|.+.|.+++.|-+|......+ ..+++.... . .|+.+
T Consensus 176 ----kPklIi~G~S~y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~-g~~~sP~~~---------a-Dvvt~ 235 (463)
T d2a7va1 176 ----RPRLIIAGTSAYAR--LID---YARMREVCDEVKAHLLADMAHISGLVAA-KVIPSPFKH---------A-DIVTT 235 (463)
T ss_dssp ----CCSEEEECCSSCCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHT-TSSCCGGGT---------C-SEEEE
T ss_pred ----CCceEEeccccccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhh-hhhcChhhh---------h-hhhhc
Confidence 88988776545543 345 6777777789999999999995443444 334443322 2 36788
Q ss_pred cCccccCCCCceEEEEEecCh--------------HHHHHHHHhhhcCC-CChHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011570 275 SLSKDMGFPGFRVGIIYSYND--------------QVVSCARKMSSFGL-VSSQTQHLIATMLSDDQFVEKFIAESAKRI 339 (483)
Q Consensus 275 S~SK~~g~~GlRiG~li~~~~--------------~l~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l 339 (483)
|.+|+| +|-|-|.+++..+ .+.+.+.....++. .++....+++.++.-.+......++..+++
T Consensus 236 tTHKTl--rGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qV 313 (463)
T d2a7va1 236 TTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 313 (463)
T ss_dssp ESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred hhhhhh--cCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHH
Confidence 999998 8999999998542 45555554433322 222222222222111111122245566677
Q ss_pred HHHHHHHHHhhhcCCceeecC-CceEEEeeecCch-hhccChHHHHHHHHHHHHhcCeEeeCCCCCC---CCCCCEEEEE
Q 011570 340 AERHKAFTWGLSQVGIGCLKS-NAGLFLWMDLHHL-LKEQTYEAEMALWRVIINEVKLNVSPGSSFH---CPNPGWFRVC 414 (483)
Q Consensus 340 ~~~~~~l~~~L~~~gi~~~~~-~~g~f~~~~l~~~-~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~---~~~~~~iRis 414 (483)
.++.+.|.+.|.+.|+++... ..+-.+++++... .. ...++..|++.||.+.--..++ +..++.|||+
T Consensus 314 v~NAk~La~~L~~~G~~vv~ggTdnHlvlvdl~~~~~~-------G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiG 386 (463)
T d2a7va1 314 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLD-------GARAERVLELVSITANKNTCPGDRSAITPGGLRLG 386 (463)
T ss_dssp HHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTTTCC-------HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCeeecCCCCCceeeeeccccCCC-------HHHHHHHHHhccCccCCccCCCCCCCCCCCceEeC
Confidence 888899999999999988743 3344677888542 22 2456677889999875333222 1124569999
Q ss_pred ecc-----CCHHHHHHHHHHHHHHHHHhh
Q 011570 415 FAN-----MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 415 ~~~-----~~~e~l~~~l~~L~~~l~~~~ 438 (483)
... ..++++.++.+-|.++++...
T Consensus 387 T~a~TtrG~~e~dm~~iA~~I~~~l~~~~ 415 (463)
T d2a7va1 387 APALTSRQFREDDFRRVVDFIDEGVNIGL 415 (463)
T ss_dssp SHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 843 467899999999988886443
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.57 E-value=9.7e-13 Score=129.59 Aligned_cols=291 Identities=16% Similarity=0.184 Sum_probs=183.6
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
..++++.+|++++ ...++.++.++.|+.+++.++ +++||+|+++..+|......+... |.+++.++.+
T Consensus 36 v~~fE~~~a~~~g----------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~-g~~p~~~d~~ 104 (384)
T d1b9ha_ 36 VNSFEREFAAHHG----------AAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRL-GAVTVPVDVD 104 (384)
T ss_dssp HHHHHHHHHHHTT----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEecccccccccccccc-cccccccccc
Confidence 5788888888875 457889999999999999987 799999999999999988888876 9999999986
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+ ..+.+|++.+++.+. +++++|+++ +..|.... +.+|.++|++++++||+|.+++....-. .. .
T Consensus 105 ~-~~~~~d~~~~~~~i~------~~tk~i~~~---~~~g~~~d---~~~i~~~~~~~~i~lieD~a~a~ga~~~-g~--~ 168 (384)
T d1b9ha_ 105 A-ATYNLDPEAVAAAVT------PRTKVIMPV---HMAGLMAD---MDALAKISADTGVPLLQDAAHAHGARWQ-GK--R 168 (384)
T ss_dssp T-TTCCBCHHHHHHHCC------TTEEEECCB---CGGGCCCC---HHHHHHHHHHHTCCBCEECTTCTTCEET-TE--E
T ss_pred c-cccccchhhhccccc------ccccccccc---cccccccc---cccchhhhhhhhhhhhhhhceecccccC-CE--e
Confidence 4 468899999998875 388887644 55666666 7888889999999999999997432111 11 1
Q ss_pred HHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-------------------CCCChHHH
Q 011570 255 IAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-------------------GLVSSQTQ 315 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-------------------~~~s~~~q 315 (483)
+-.. .+-.++-.+.+|.++. -.-|.++++++.+.+.++.+... ...+.+ |
T Consensus 169 ~g~~--------g~~~~~Sf~~~K~i~~--g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l-~ 237 (384)
T d1b9ha_ 169 VGEL--------DSIATFSFQNGKLMTA--GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEF-S 237 (384)
T ss_dssp GGGS--------SSCEEEECCTTSSSCS--SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHH-H
T ss_pred cCcc--------cccceecccccccccc--cccchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccc-h
Confidence 1111 1223332344888753 23688888777777665543321 112223 3
Q ss_pred HHH-HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceeec--C----CceEEEeeecCchhhccChHHHHHHHH
Q 011570 316 HLI-ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLK--S----NAGLFLWMDLHHLLKEQTYEAEMALWR 387 (483)
Q Consensus 316 ~~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~--~----~~g~f~~~~l~~~~~~~~~~~~~~~~~ 387 (483)
+++ ..-|.. ++++.+ .-+++.+++.+.|.+. ++.... . ...++..+.++.... ....++.+
T Consensus 238 Aaig~~qL~~---ld~~~~----~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Rd~l~~ 306 (384)
T d1b9ha_ 238 ASVLRAQLAR---LDEQIA----VRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE----ERRNALVD 306 (384)
T ss_dssp HHHHHHHHTT---HHHHHH----HHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH----HHHHHHHH
T ss_pred hhhhhhhhhh---cccchh----hhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc----ccHHHHHH
Confidence 332 222332 233333 2344556666777665 443221 1 112233344442111 11225666
Q ss_pred HHHHhcCeEeeCCCC----------CCCCC-----------------CCEEEEEecc-CC-HHHHHHHHHHHHHHHHH
Q 011570 388 VIINEVKLNVSPGSS----------FHCPN-----------------PGWFRVCFAN-MD-DRTMEIALSRITSFMLK 436 (483)
Q Consensus 388 ~Ll~~~gV~v~pg~~----------f~~~~-----------------~~~iRis~~~-~~-~e~l~~~l~~L~~~l~~ 436 (483)
.|. +.||.+++.-. ++... +..+.|-+.. .+ +++++..++.|++++++
T Consensus 307 ~L~-~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 307 RLV-EAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp HHH-HTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 665 56998765411 00000 1236666533 45 67999999999998875
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.7e-13 Score=131.91 Aligned_cols=276 Identities=12% Similarity=0.117 Sum_probs=167.0
Q ss_pred CCCcEEEeCChhHHHHHHHHHhc----------CCCCeEEEeCCCCcChHHHHhhhcC------------cEEEEeecCC
Q 011570 118 DPDRIVMSGGATGAHETVAFCLA----------DPGDAFLVPTPYYPGFDRDLRWRTG------------VQLVPVVCDS 175 (483)
Q Consensus 118 ~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~P~y~~~~~~~~~~~G------------~~~~~v~~~~ 175 (483)
..+.+++++++++++..++.... .....++...-+|...........+ ..+..+|.
T Consensus 97 ~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-- 174 (404)
T d2byla1 97 NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-- 174 (404)
T ss_dssp TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT--
T ss_pred cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc--
Confidence 35789999999999999987642 1224677666666543222111101 11223332
Q ss_pred CCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCc-CCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcc
Q 011570 176 SNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLG-TFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFV 253 (483)
Q Consensus 176 ~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG-~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~ 253 (483)
.|++.+++.+.+ .++.+|++ .| ....| ...+++.+++|.++|++||+++|.||+..++...+ .+.
T Consensus 175 -----~d~~~l~~~l~~-----~~iAavii-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G--~~~ 241 (404)
T d2byla1 175 -----NDLPALERALQD-----PNVAAFMV-EPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG--RWL 241 (404)
T ss_dssp -----TCHHHHHHHHTS-----TTEEEEEE-CSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS--SSS
T ss_pred -----cCHHHHHHhcCC-----CCeEEEEE-CCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccc--ccc
Confidence 368888888753 35665555 56 44456 45678889999999999999999999998743332 223
Q ss_pred hHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc--CCCChHHHHHHHHhcCChhHHHH
Q 011570 254 SIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQHLIATMLSDDQFVEK 330 (483)
Q Consensus 254 s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~~~~~~l~~~~~~~~ 330 (483)
....+.- .+| |+ +++|.+| .| +.+|.+++ ++.+.+.+...... +..++++.+++.+.|+.- ++
T Consensus 242 a~~~~gv-----~PD--i~--~~gK~l~-gG~~p~~av~~-~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i---~~ 307 (404)
T d2byla1 242 AVDYENV-----RPD--IV--LLGKALS-GGLYPVSAVLC-DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVL---EE 307 (404)
T ss_dssp GGGGGTC-----CCS--EE--EECGGGG-TTSSCCEEEEE-CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHH---HH
T ss_pred hhhhcCC-----CCC--EE--EECchhh-CCCccceeeee-chhhhhccCCCCCCcCCCcCHHHHHHHHHHHHHH---Hh
Confidence 3322211 223 33 8899998 66 89999999 56665543222111 234667666666655421 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC---ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCC
Q 011570 331 FIAESAKRIAERHKAFTWGLSQVG---IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPN 407 (483)
Q Consensus 331 ~~~~~~~~l~~~~~~l~~~L~~~g---i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~ 407 (483)
....+..++.-+++.+.|.++. +.-... -|++.-+.+...... ....+..++++ +||++.+. .
T Consensus 308 --~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg-~Gl~~~i~~~~~~~~----~~~~~~~~l~~-~Gvl~~~~------~ 373 (404)
T d2byla1 308 --ENLAENADKLGIILRNELMKLPSDVVTAVRG-KGLLNAIVIKETKDW----DAWKVCLRLRD-NGLLAKPT------H 373 (404)
T ss_dssp --TTHHHHHHHHHHHHHHHHHTSCTTTEEEEEE-ETTEEEEEECCCSSC----CHHHHHHHHHH-TTEECEEE------E
T ss_pred --cCchhhhhHhhHHHHHHHHhhccccceeeee-cccEEEEEEecCCch----hHHHHHHHHHh-CCeEEecC------C
Confidence 1122333444455666666541 222222 344555555432111 13367777775 59998763 1
Q ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 408 PGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 408 ~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
.+.+|++... ++++++++++++|++++++
T Consensus 374 ~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 374 GDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 3579999765 5999999999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.53 E-value=5e-13 Score=133.38 Aligned_cols=298 Identities=14% Similarity=0.160 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhc-------Cc-
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRT-------GV- 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~-------G~- 166 (483)
..+...+++.+....+ ..+.+.+++++++|+..++.... .....|+....+|.+......... +.
T Consensus 91 ~~~~~~la~~~~~~~~-----~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p 165 (427)
T d2gsaa_ 91 CALENVLAEMVNDAVP-----SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLP 165 (427)
T ss_dssp CHHHHHHHHHHHHHST-----TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCC
T ss_pred hhHHHHHHHHHHhhCC-----ccccccccCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCC
Confidence 3456667777765432 45789999999999999987642 234678888888865432111000 11
Q ss_pred -----------EEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCc
Q 011570 167 -----------QLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 167 -----------~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~ 233 (483)
+...++ .-|++.+++.+++. ..++.+|++ .| ..-.|. +.+.+.+++|.++|++||+
T Consensus 166 ~~~~~~~~~~~~~~~~~-------~~~~~~le~~~~~~---~~~iaavi~-Epi~g~~G~~~~~~~~l~~l~~lc~~~~~ 234 (427)
T d2gsaa_ 166 SSPGVPKKTTANTLTTP-------YNDLEAVKALFAEN---PGEIAGVIL-EPIVGNSGFIVPDAGFLEGLREITLEHDA 234 (427)
T ss_dssp SCSSSCHHHHTTEEEEC-------TTCHHHHHHHHTTS---TTTEEEEEE-CSSBCSSSCBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCCcccCccceeccC-------cchHHHHHHHHHhC---CCCeEEEEE-cCCcCCCCCccCCHHHHHHHHHHHHHhce
Confidence 111222 13788898888642 235655555 45 333465 4577789999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhhhc-----C
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMSSF-----G 308 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~-----~ 308 (483)
++|.||++.++ ..+ .......+.- .+| ++ +++|.+| .|+.+|.+++ .+++.+.+.....+ +
T Consensus 235 llI~DEv~tG~-r~g--~~~~~~~~gi-----~PD-i~---~~gK~lg-gG~p~~a~~~-~~~i~~~~~~~~~~~~~~T~ 300 (427)
T d2gsaa_ 235 LLVFDEVMTGF-RIA--YGGVQEKFGV-----TPD-LT---TLGKIIG-GGLPVGAYGG-KREIMQLVAPAGPMYQAGTL 300 (427)
T ss_dssp EEEEECTTTBT-TTB--TTCHHHHTTC-----CCS-EE---EECGGGG-TTSCCEEEEE-CHHHHTTBTTTSSBCCCCTT
T ss_pred eeeeccccccc-eec--ccchHHhcCC-----CHH-HH---hhhhccC-CCcceeeeee-hHHHHHHhcccCCCcCCCCC
Confidence 99999999874 222 2233332211 223 22 5689998 8999999888 56666554321111 2
Q ss_pred CCChHHHHHHHHh---cCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeec-CCceEEE--eeecC-ch---hhccC
Q 011570 309 LVSSQTQHLIATM---LSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLK-SNAGLFL--WMDLH-HL---LKEQT 378 (483)
Q Consensus 309 ~~s~~~q~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~-~~~g~f~--~~~l~-~~---~~~~~ 378 (483)
..++++.+++.+. +.+.+. .+.+.++-+++++. +.+...+.++.+.. ..++++- |.+-+ .. .....
T Consensus 301 ~gnpla~AAala~Le~i~~~~l-~~~~~~~g~~l~~~---L~~l~~~~~~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d 376 (427)
T d2gsaa_ 301 SGNPLAMTAGIKTLELLRQPGT-YEYLDQITKRLSDG---LLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSD 376 (427)
T ss_dssp TTCHHHHHHHHHHHHHHTSTTH-HHHHHHHHHHHHHH---HHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSC
T ss_pred CCCchhhHHHHHhhHHhhhhhH-HhhhhHHHHHHHHH---HHHHHhhcCCCcEEcccCCeEEEEEeccCCCCHHHhhccc
Confidence 3456666555544 334332 23333333334333 23333334443322 2233332 21111 10 01111
Q ss_pred hHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEeccCCHHHHHHHHHHHHHHHHH
Q 011570 379 YEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFANMDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 379 ~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~~~~e~l~~~l~~L~~~l~~ 436 (483)
......+...+++ +||.+.|+.. . . +-+++. ++++++++++++|++++++
T Consensus 377 ~~~~~~~~~~ll~-~Gv~l~p~~~-~----~-~~~~l~-~Te~dId~~l~al~~al~~ 426 (427)
T d2gsaa_ 377 LQKFSRFHRGMLE-QGIYLAPSQF-E----A-GFTSLA-HTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHHH-TTEECCSSTT-S----C-EECCTT-CCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH-CCEEECCCCC-c----c-eeCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 1222356666775 5999987542 1 1 224443 6999999999999998864
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=1.7e-12 Score=129.39 Aligned_cols=298 Identities=11% Similarity=0.041 Sum_probs=171.9
Q ss_pred HHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-------CCCCeEEEeCCCCcChHHHHhhhcC-------
Q 011570 100 RNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-------DPGDAFLVPTPYYPGFDRDLRWRTG------- 165 (483)
Q Consensus 100 r~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-------~~gd~Vlv~~P~y~~~~~~~~~~~G------- 165 (483)
...+++.+..... ..-+.+.+++++++++..++.... .+..+|+....+|.+.........+
T Consensus 88 ~~~l~~~l~~~~~----~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~ 163 (429)
T d1s0aa_ 88 AIELCRKLVAMTP----QPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHS 163 (429)
T ss_dssp HHHHHHHHHHHSC----TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGG
T ss_pred HHHHHHHHHhhhc----cCcceeeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCcccccc
Confidence 3444444443322 345789999999999998886542 2345788888887654332221111
Q ss_pred ------cEEEEeecCC-CCCcc---cCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCc
Q 011570 166 ------VQLVPVVCDS-SNDFK---VTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNI 233 (483)
Q Consensus 166 ------~~~~~v~~~~-~~~~~---~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~ 233 (483)
......|... ..... -+++.+++.+.+ .+.++.+|++.-. ++-.|. ..+++.+++|.++|++||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gi 240 (429)
T d1s0aa_ 164 LWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA---HRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGI 240 (429)
T ss_dssp GGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH---HTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTC
T ss_pred ccCccccccccccccccccccccchhhhhhhhhhhhh---cCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCc
Confidence 1112222111 11111 235555554443 3446766666533 354554 5689999999999999999
Q ss_pred EEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh-------h
Q 011570 234 HLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS-------S 306 (483)
Q Consensus 234 ~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~-------~ 306 (483)
++|.||++.++...+ .+.....+.- .+| |+ +++|.++-.++.+|.+++ .+++.+.+.... .
T Consensus 241 llI~DEV~tGfGRtG--~~~~~~~~~v-----~PD--i~--~~gK~l~gG~~p~~av~~-~~~i~~~~~~~~~~~~~~~~ 308 (429)
T d1s0aa_ 241 LLIADEIATGFGRTG--KLFACEHAEI-----APD--IL--CLGKALTGGTMTLSATLT-TREVAETISNGEAGCFMHGP 308 (429)
T ss_dssp EEEEECTTTTTTTTS--SSSGGGGGTC-----CCS--EE--EECGGGGTSSSCCEEEEE-CHHHHHHHHTSTTSSCSCCC
T ss_pred ceehhhccccccccc--ccccccccee-----ccc--cc--ccccccccccccccchhh-HHHHHhccCCCCCcceeecC
Confidence 999999998853333 2223222211 223 22 668999745589999999 566666554311 1
Q ss_pred cCCCChHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CceeecCCceEEEeeecCchhhccChHHH
Q 011570 307 FGLVSSQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV----GIGCLKSNAGLFLWMDLHHLLKEQTYEAE 382 (483)
Q Consensus 307 ~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----gi~~~~~~~g~f~~~~l~~~~~~~~~~~~ 382 (483)
.+..++++.+++.+.|+--. + +...+..++.-+++.+.|+++ .+.-.. .-|+++-+++..... .
T Consensus 309 T~~gnp~~~aaa~a~L~~i~---~--~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vr-g~Gl~~~~e~~~~~~------~ 376 (429)
T d1s0aa_ 309 TFMGNPLACAAANASLAILE---S--GDWQQQVADIEVQLREQLAPARDAEMVADVR-VLGAIGVVETTHPVN------M 376 (429)
T ss_dssp TTTTCHHHHHHHHHHHHHHH---T--CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEE-EETTEEEEEESSCBC------H
T ss_pred CCCCCcccchhhhccccccc---c--ccccchhhHHHHHHHHHHHHhccCCceEEEe-ecccEEEEEecCccc------H
Confidence 12246666666655553211 0 112223333344555555443 222222 234566677754221 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 383 MALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 383 ~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
..+...+++ +||.+.+. .+.+|++... ++++++++++++|.+++++
T Consensus 377 ~~~~~~~~~-~Gl~~~~~-------g~~i~~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 377 AALQKFFVE-QGVWIRPF-------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp HHHHHHHHH-TTEECCCB-------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHH-CCcEEEec-------CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 356677765 59998763 2479999765 5999999999999988764
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.49 E-value=3.3e-12 Score=126.49 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----------CCCCeEEEeCCCCcChHHHHhhhcCc
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----------DPGDAFLVPTPYYPGFDRDLRWRTGV 166 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----------~~gd~Vlv~~P~y~~~~~~~~~~~G~ 166 (483)
....+.+++.+.... ..+.+.++++++++...++.... .....++....+|...........+.
T Consensus 80 ~~~~~~~~~~~~~~~------~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~ 153 (404)
T d1z7da1 80 SVPLGICERYLTNLL------GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTT 153 (404)
T ss_dssp EHHHHHHHHHHHHHH------TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------
T ss_pred hHHHHHHHHhhhhcc------ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccc
Confidence 344455555555442 35789999999999998876542 12246777777776544332221111
Q ss_pred EE---EEeecCCCCCcc---cCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCC-CCHHHHHHHHHHHhhcCcEEEEcc
Q 011570 167 QL---VPVVCDSSNDFK---VTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTF-LDRETLKDIVSFINEKNIHLVCDE 239 (483)
Q Consensus 167 ~~---~~v~~~~~~~~~---~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~-~~~~~l~~i~~~a~~~~~~iI~De 239 (483)
.. ...|... ..+. -+.+.++..+. ..++.+|++..-....|.+ .+++.+++|.++|++||+++|.||
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DE 227 (404)
T d1z7da1 154 KKCTSNFGPFAP-QFSKVPYDDLEALEEELK-----DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 227 (404)
T ss_dssp -------------CEEEECTTCHHHHHHHHT-----STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred cccccCCCCCCc-cccccccchHHHHHHHhc-----CCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 11 0111100 0011 14555555543 2356555554335556765 467779999999999999999999
Q ss_pred ccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC-ceEEEEEecChHHHHHHHHhhhc--CCCChHHHH
Q 011570 240 IYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG-FRVGIIYSYNDQVVSCARKMSSF--GLVSSQTQH 316 (483)
Q Consensus 240 ay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G-lRiG~li~~~~~l~~~~~~~~~~--~~~s~~~q~ 316 (483)
+..++.-.+ .+.....+.- .+| |+ +++|.+| .| +.+|.+++ ++++.+.+...... +..++++.+
T Consensus 228 V~tGfgRtG--~~~~~e~~gv-----~PD--iv--t~gK~l~-gG~~p~~~v~~-~~~i~~~~~~~~~~~T~~gnpl~~a 294 (404)
T d1z7da1 228 VQTGLGRTG--KLLCVHHYNV-----KPD--VI--LLGKALS-GGHYPISAVLA-NDDIMLVIKPGEHGSTYGGNPLAAS 294 (404)
T ss_dssp TTTTTTTTS--SSSGGGGGTC-----CCS--EE--EECGGGG-TTSSCCEEEEE-CHHHHTTCCTTCCCCTTTTCHHHHH
T ss_pred CccCCCccc--ccccccccCC-----CCC--EE--EEccccc-CCCCCcccccc-hHHHHccCCCCCcCcCCCCCcchhh
Confidence 998742222 2233322211 223 33 7899998 55 89999999 56665544322111 235677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 317 LIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 317 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
++.+.|+-... ++..+...+.-....+.+.+.+.+.++......-|+++.+.+..... ...++...+++ +||.
T Consensus 295 aa~a~L~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~~~~~-----~~~~~~~~l~~-~Gl~ 367 (404)
T d1z7da1 295 ICVEALNVLIN-EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV-----NVLDICLKLKE-NGLI 367 (404)
T ss_dssp HHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTTC-----CHHHHHHHHHH-TTEE
T ss_pred hhhhhhhhhhc-chhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEcCCcc-----cHHHHHHHHHh-CCeE
Confidence 66666542110 11122222222333344555566665432222334566677754211 12356667764 5999
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.+. +++.|||..+. ++++++++++++|++++++.
T Consensus 368 ~~~~------~~~~ir~~Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 368 TRDV------HDKTIRLTPPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CCEE------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecC------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHhh
Confidence 8653 24579998765 59999999999999999875
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.49 E-value=1.9e-12 Score=127.27 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc--CCCCeEEEeCCCCcChHHHHhhhcC---------
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA--DPGDAFLVPTPYYPGFDRDLRWRTG--------- 165 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~--~~gd~Vlv~~P~y~~~~~~~~~~~G--------- 165 (483)
.+.+..+++.+..... ...+.+.+++++++++..+++... .....|+....+|.+.........|
T Consensus 78 ~~~~~~la~~l~~~~~----~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~ 153 (387)
T d1vefa1 78 TPMRGEFYRTLTAILP----PELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL 153 (387)
T ss_dssp CHHHHHHHHHHHHTSC----TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC
T ss_pred CchHHHHHHHhhhhcc----ccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCC
Confidence 4566777777664322 223579999999999999986641 2336788888888664433322212
Q ss_pred ---cEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccc
Q 011570 166 ---VQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNIHLVCDEI 240 (483)
Q Consensus 166 ---~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Dea 240 (483)
..+..+|. -|++.|++.+.+ ++.+|++ .| ....|. ..+++.+++|.++|++||+++|.||+
T Consensus 154 p~~~~~~~~p~-------~d~~~l~~~~~~------~iAavi~-EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV 219 (387)
T d1vefa1 154 PLVEPVEFIPY-------NDVEALKRAVDE------ETAAVIL-EPVQGEGGVRPATPEFLRAAREITQEKGALLILDEI 219 (387)
T ss_dssp SCSSCEEEECT-------TCHHHHHHHCCT------TEEEEEE-CSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCCceEeCC-------CCHHHHHHhcCC------CeEEEEE-ECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccc
Confidence 12333432 267888887743 6666555 56 444565 46788999999999999999999999
Q ss_pred cccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh--hcCCCChHHHHHH
Q 011570 241 YAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS--SFGLVSSQTQHLI 318 (483)
Q Consensus 241 y~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~--~~~~~s~~~q~~~ 318 (483)
..++...+ . +.....+.- .+| ++ +++|.+| .|+.++.+++. +.+........ ..+..++++.+++
T Consensus 220 ~tGfgR~G-~-~~~~~~~~v-----~PD--i~--~~gK~l~-gG~~~~~~~~~-~~~~~~~~~~~~g~T~~gnPla~aaa 286 (387)
T d1vefa1 220 QTGMGRTG-K-RFAFEHFGI-----VPD--IL--TLAKALG-GGVPLGVAVMR-EEVARSMPKGGHGTTFGGNPLAMAAG 286 (387)
T ss_dssp TTTTTTTS-S-SSTHHHHTC-----CCS--EE--EECGGGG-TTSSCEEEEEE-HHHHHTSCTTSSCCSSTTCHHHHHHH
T ss_pred ccccCccC-C-CcccccCCc-----CCc--ee--eecccCC-CCccccccccc-eeeeeccccCCccccCCCCcchhhhc
Confidence 98753232 2 223222211 223 22 6789998 88888988884 44443322111 1123567777666
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCC---ceeecCCceEEEeeecCchhhccChHHHHHHHHHHHHhcCe
Q 011570 319 ATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVG---IGCLKSNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKL 395 (483)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~g---i~~~~~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV 395 (483)
.+.|+.- ++ ....+++++.-+++.+.|+++. +.-... -|++..+++.... ...+...+. +.|+
T Consensus 287 ~a~L~~l---~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg-~Gl~~~ie~~~~~-------~~~~~~~~~-~~g~ 352 (387)
T d1vefa1 287 VAAIRYL---ER--TRLWERAAELGPWFMEKLRAIPSPKIREVRG-MGLMVGLELKEKA-------APYIARLEK-EHRV 352 (387)
T ss_dssp HHHHHHH---HH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEE-ETTEEEEEESSCS-------HHHHHHHHH-HHCE
T ss_pred ccchhhc---cc--ccccchHhhhhHHHHHHHHhcCCCceEEEee-cceEEEEEEeCCc-------hHHHHHHHH-HCCC
Confidence 6655421 11 1223444555566677776552 221222 2456667775421 113334344 5588
Q ss_pred EeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 396 NVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 396 ~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
.+.+. +++.+|++.+. +++++++++++++++++
T Consensus 353 l~~~~------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 353 LALQA------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp ECEES------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred eEEec------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 76643 24579999765 59999999999999876
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.48 E-value=4.8e-12 Score=126.40 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh--cCCCCeEEEeCCCCcChHHHHhhhcC----------
Q 011570 98 EFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL--ADPGDAFLVPTPYYPGFDRDLRWRTG---------- 165 (483)
Q Consensus 98 ~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~G---------- 165 (483)
+....+|+.+.+... -..+.+++++++++|+..++... ....+.|+...-+|.+.........+
T Consensus 83 ~~~~~la~~L~~~~~----~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~ 158 (431)
T d1zoda1 83 RPVVDLATRLANITP----PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPA 158 (431)
T ss_dssp HHHHHHHHHHHHHSC----TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCC
T ss_pred HHHHHHHHHHHHhCC----cccceeeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCc
Confidence 344556666655432 24578999999999999998763 12346788888888765443322111
Q ss_pred -cEEEEeecCCC-------CCcccCHHHHHHHHHHHHhcC-CceeEEEEeCC-CCCCcC-CCCHHHHHHHHHHHhhcCcE
Q 011570 166 -VQLVPVVCDSS-------NDFKVTMEALEAAYEKAQESN-IRIKGVLITNP-SNPLGT-FLDRETLKDIVSFINEKNIH 234 (483)
Q Consensus 166 -~~~~~v~~~~~-------~~~~~d~~~l~~~i~~~~~~~-~~~~~i~l~~P-~NPtG~-~~~~~~l~~i~~~a~~~~~~ 234 (483)
.....++.... .....+.+.++.........+ .++.+ ++..| ..-.|. ..|++.+++|.++|++||++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAa-vi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gil 237 (431)
T d1zoda1 159 AVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA-FIAEPILSSGGIIELPDGYMAALKRKCEARGML 237 (431)
T ss_dssp CTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEE-EEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred ccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccc-eeeccccccCCccCCCHHHHHHHHHHHHhcCce
Confidence 11122221110 011112334444333222222 34554 44556 333445 46888999999999999999
Q ss_pred EEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHHHHHHHhh----hcCCC
Q 011570 235 LVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVVSCARKMS----SFGLV 310 (483)
Q Consensus 235 iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~~~~~~~~----~~~~~ 310 (483)
+|.||+..++...+ . +.....+.- .+| ++ +++|.+| .|+.+|.+++. +.+........ .....
T Consensus 238 lI~DEV~tG~gRtG-~-~~~~~~~gv-----~PD--i~--~~gK~l~-gG~p~~av~~~-~~~~~~~~~~~~~~~~T~~g 304 (431)
T d1zoda1 238 LILDEAQTGVGRTG-T-MFACQRDGV-----TPD--IL--TLSKTLG-AGLPLAAIVTS-AAIEERAHELGYLFYTTHVS 304 (431)
T ss_dssp EEEECTTTTTTTTS-S-SSTHHHHTC-----CCS--EE--EECHHHH-TTSSCEEEEEC-HHHHHHHHHTTCCCCCTTTT
T ss_pred EEeccccccccccc-c-ccccccCCC-----Ccc--hh--ccccccc-cccccceeeee-ecchhhhhcccccccCCCCC
Confidence 99999998753333 2 233332211 223 22 6789998 88999988884 54444433221 11335
Q ss_pred ChHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEEEeeecCchh--hccChHHHHHH
Q 011570 311 SSQTQHLIATMLS---DDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLFLWMDLHHLL--KEQTYEAEMAL 385 (483)
Q Consensus 311 s~~~q~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f~~~~l~~~~--~~~~~~~~~~~ 385 (483)
++++.+++.+.+. .+.. .+...+.-+.+. +.+.+.+.+.++......-|+++-+++.... ..........+
T Consensus 305 ~pl~~aaa~a~l~~i~~~~~-~~~~~~~g~~l~---~~l~~~~~~~~~i~~vrG~Glm~~ie~~~~~~~~~~~~~~~~~i 380 (431)
T d1zoda1 305 DPLPAAVGLRVLDVVQRDGL-VARANVMGDRLR---RGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKI 380 (431)
T ss_dssp CHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHH---HHHHHHHHHCTTEEEEEEETTEEEEEEEEETTTTEECTTHHHHH
T ss_pred CcchHHHHHHHHHHhhhhhh-hHHHHHHHHHHh---hhhhhhhhcCCCeEEEeecceEEEEEEecCCcccCccHHHHHHH
Confidence 5666555555443 2222 122222222222 3334444444543333333445555552211 11111122356
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 386 WRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 386 ~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
...+++ +|+.+..-. .....+.+|++.+. ++++++++++++|.+++++
T Consensus 381 ~~~~~~-~Gl~~~~~~--~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 381 TRECMN-LGLSMNIVQ--LPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp HHHHHH-TTEECCEEC--CTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hCcccCeee--ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 666664 588642211 11234689999876 5999999999999999976
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.40 E-value=3.5e-11 Score=117.69 Aligned_cols=290 Identities=11% Similarity=0.076 Sum_probs=178.3
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCC--CeEEEeCCCCcChHHHHhhhcCcEEEEee
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPG--DAFLVPTPYYPGFDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~g--d~Vlv~~P~y~~~~~~~~~~~G~~~~~v~ 172 (483)
...+++.++++++ ...++.+++++.|+.+++.++- .+| |+|+++.-+|.....++... |++++.++
T Consensus 33 v~~fE~~~~~~~g----------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~-G~~pv~vD 101 (371)
T d2fnua1 33 SLLFEEALCEFLG----------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLES-GYTPVFAG 101 (371)
T ss_dssp HHHHHHHHHHHHT----------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHT-TCEEEECC
T ss_pred HHHHHHHHHHHHC----------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeecc-Cccccccc
Confidence 5788888888876 3578999999999999999874 344 58999999999888888875 99999999
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
++.+. .++.+.+++.+. +++++|++++ ..|...+ +.+|.++|++++++||+|.+++....-. ..
T Consensus 102 i~~~~--~~~~~~~~~~~~------~~t~avi~vh---~~G~~~~---~~~i~~~~~~~~i~lIEDaaqa~Ga~~~-~~- 165 (371)
T d2fnua1 102 IKNDG--NIDELALEKLIN------ERTKAIVSVD---YAGKSVE---VESVQKLCKKHSLSFLSDSSHALGSEYQ-NK- 165 (371)
T ss_dssp BCTTS--SBCGGGSGGGCC------TTEEEEEEEC---GGGCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEET-TE-
T ss_pred ccccc--cccchhhhhhcc------chhhcccccc---ccccccc---cccccccccccchhhccchhhccCceec-cc-
Confidence 87643 345566666654 4899998774 4577777 7788889999999999999997532111 11
Q ss_pred chHHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhhhcC------------------CCCh
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMSSFG------------------LVSS 312 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~~~~------------------~~s~ 312 (483)
..-. ..+ +.+.|| +|.++..+ -|.++++++.+.+.++.....+ ..+.
T Consensus 166 -~~G~--------~g~--~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~se 232 (371)
T d2fnua1 166 -KVGG--------FAL--ASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNE 232 (371)
T ss_dssp -ETTS--------SSS--EEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCH
T ss_pred -cCCc--------ccc--cccccccccccccccc--ceEEEeechhhhhhcccccccccccccccccccccccccccccc
Confidence 1100 112 234455 89886433 6899998888888776644321 1122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecC----Cce-EEEeeecCchhhccChHHHHHHH
Q 011570 313 QTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKS----NAG-LFLWMDLHHLLKEQTYEAEMALW 386 (483)
Q Consensus 313 ~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~----~~g-~f~~~~l~~~~~~~~~~~~~~~~ 386 (483)
+..+.+..-|.. +.+++++ -++...+..+.|.+. ++....+ ... ....+.+..... ....++.
T Consensus 233 l~Aaigl~qL~~---l~~~~~~----R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~r~~~~ 301 (371)
T d2fnua1 233 IQSALGLSQLKK---APFLMQK----REEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFF----TCKKLIL 301 (371)
T ss_dssp HHHHHHHHHHTT---HHHHHHH----HHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGG----GGHHHHH
T ss_pred hhhhhhhhhhhh---ccchhhh----hhhhhhhhcccccccccccccccccccccccccccccccccch----hHHHHHH
Confidence 222222222332 2233332 233445556667665 3443321 111 112222332111 1122556
Q ss_pred HHHHHhcCeEeeCCCCCC----------CCCC---------CEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 387 RVIINEVKLNVSPGSSFH----------CPNP---------GWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 387 ~~Ll~~~gV~v~pg~~f~----------~~~~---------~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
+.|. +.||.+++.-..- ...+ ..+.|-+.. .++++++..++.|.+++++.
T Consensus 302 ~~L~-~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 302 ESLH-KRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HHHH-HTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 6665 5699887642100 0111 236554432 59999999999999998863
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.38 E-value=1.4e-10 Score=113.31 Aligned_cols=173 Identities=20% Similarity=0.185 Sum_probs=123.4
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh-cCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecC
Q 011570 96 LPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL-ADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCD 174 (483)
Q Consensus 96 ~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~ 174 (483)
...+++.++++++ ....+.++++|.|+.+++.++ +++||+|++|.-+|......+... |++++.++++
T Consensus 23 ~~~fE~~~~~~~~----------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~-g~~pv~~Di~ 91 (374)
T d1o69a_ 23 VNRFEQSVKDYSK----------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYL-KAKPVFIDCD 91 (374)
T ss_dssp HHHHHHHHHHHHC----------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHT-TCEEEEECBC
T ss_pred HHHHHHHHHHHHC----------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhc-cceeEecccc
Confidence 5788888888876 347899999999999999998 789999999999999988888876 9999999987
Q ss_pred CCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcch
Q 011570 175 SSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVS 254 (483)
Q Consensus 175 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s 254 (483)
+. .+..+.+..+.... ...++++|++++. .|.... +.+|.++|+++|++||+|.+++....-. . ..
T Consensus 92 ~~-~~~~~~~~~~~~~~----~~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~vIED~a~a~g~~~~-~--~~ 157 (374)
T d1o69a_ 92 ET-YNIDVDLLKLAIKE----CEKKPKALILTHL---YGNAAK---MDEIVEICKENDIVLIEDAAEALGSFYK-N--KA 157 (374)
T ss_dssp TT-SSBCHHHHHHHHHH----CSSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEET-T--EE
T ss_pred cc-cccccccccccchh----ccccccccccccc---ccchhh---hHHHHHHhhccCcchhhhhhhhhcceEC-C--ee
Confidence 43 23333333332211 2347888887655 455566 7888899999999999999997422111 1 11
Q ss_pred HHHhhhhccccCCCeEEEEecC--ccccCCCCceEEEEEecChHHHHHHHHhh
Q 011570 255 IAEIIDQDIACNRNLIHIVYSL--SKDMGFPGFRVGIIYSYNDQVVSCARKMS 305 (483)
Q Consensus 255 ~~~l~~~~~~~~~~~vi~~~S~--SK~~g~~GlRiG~li~~~~~l~~~~~~~~ 305 (483)
+- .. ..+.+.|| +|.++..| -|.+++.++.+.+.++.++
T Consensus 158 ~G---------~~-gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~ 198 (374)
T d1o69a_ 158 LG---------TF-GEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYS 198 (374)
T ss_dssp TT---------SS-SSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHT
T ss_pred cC---------CC-CceEEEeccCcccccccc--ceeehhhhHHHHHhhcccc
Confidence 11 11 13445566 58886444 5888888888877766543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=2.5e-11 Score=121.92 Aligned_cols=305 Identities=12% Similarity=0.083 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc----------------------------CCCCeEEE
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA----------------------------DPGDAFLV 148 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~----------------------------~~gd~Vlv 148 (483)
..+.+.+++.+..... -..+.+++++++++++..++.... .+...|+.
T Consensus 99 ~~~a~~lae~l~~~~~----~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~ 174 (461)
T d1ohwa_ 99 ENFVEKLRESLLSVAP----KGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILS 174 (461)
T ss_dssp TTHHHHHHHTGGGGCC----TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEE
T ss_pred HHHHHHHHHHHHhhhc----cCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEE
Confidence 4566777777654322 245689999999999999886541 22357888
Q ss_pred eCCCCcChHHHHhhhcCc-------------EEEEeecCCC-CC---------cccCHHHHHHHHHHHHhcCCceeEEEE
Q 011570 149 PTPYYPGFDRDLRWRTGV-------------QLVPVVCDSS-ND---------FKVTMEALEAAYEKAQESNIRIKGVLI 205 (483)
Q Consensus 149 ~~P~y~~~~~~~~~~~G~-------------~~~~v~~~~~-~~---------~~~d~~~l~~~i~~~~~~~~~~~~i~l 205 (483)
...+|++.........|- ...+.+.... .. ...+.+.+++.+........++.+|++
T Consensus 175 ~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAaviv 254 (461)
T d1ohwa_ 175 FMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIV 254 (461)
T ss_dssp ETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeee
Confidence 888887643333222121 1111110000 00 012355666666655444556666665
Q ss_pred eCCCCCCcC-CCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccCCCC
Q 011570 206 TNPSNPLGT-FLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMGFPG 284 (483)
Q Consensus 206 ~~P~NPtG~-~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~G 284 (483)
..-+...|. ..+.+.+++|.++|++||+++|.||++.++...+ .+.....+.- .....++ +++|.++ .
T Consensus 255 EPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG--~~~~~e~~gi-----~~~PDiv--~~gK~l~-~- 323 (461)
T d1ohwa_ 255 EPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTG--KFWAHEHWGL-----DDPADVM--TFSKKMM-T- 323 (461)
T ss_dssp CSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTS--SSSGGGGGCC-----SSCCSEE--EECGGGS-S-
T ss_pred ccccccccccCchhhHHHHHHHHHHhhCcceecccccccccccc--cccccccccc-----ccCchhh--hhhhccc-c-
Confidence 544544554 5688899999999999999999999998753333 3333322211 1112233 7789885 3
Q ss_pred ceEEEEEecChHHHHHHH-HhhhcCCCChHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecC
Q 011570 285 FRVGIIYSYNDQVVSCAR-KMSSFGLVSSQTQHLIATMLSD---DQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKS 360 (483)
Q Consensus 285 lRiG~li~~~~~l~~~~~-~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~ 360 (483)
|++.. ...+..... .....+..++++.+++.+.|+- .+. .++.++.-+.+.+....+...... -+.-...
T Consensus 324 ---g~~~~-~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l-~~~~~~~g~~l~~~l~~l~~~~~~-~i~~vrG 397 (461)
T d1ohwa_ 324 ---GGFFH-KEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDL-LSNAAHAGKVLLTGLLDLQARYPQ-FISRVRG 397 (461)
T ss_dssp ---EEEEE-CGGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHCTT-TCEEEEE
T ss_pred ---ccccc-ccccccccccccccccccccccchhhcccchhhhhhhH-HHHHHHHHHHHHHHHHHHHhhCCC-ceEEeee
Confidence 44444 222211100 0111133456666555555432 221 122233323333222222221110 1221222
Q ss_pred CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 361 NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 361 ~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
. |+++-++++... ...++...+++ +||++.+.. ++.|||.... ++++++++++++|.+++.+
T Consensus 398 ~-Gl~~~ie~~~~~------~~~~i~~~~~~-~Gll~~~~~------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 398 R-GTFCSFDTPDES------IRNKLISIARN-KGVMLGGCG------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp E-TTEEEEECSSHH------HHHHHHHHHHH-TTEECEEET------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred e-eEEEEEEcCCHH------HHHHHHHHHHH-CCeEEeeCC------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 3 567778887521 22366777775 599987642 4579998765 5999999999999999875
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.19 E-value=9.4e-11 Score=113.99 Aligned_cols=269 Identities=11% Similarity=0.076 Sum_probs=146.1
Q ss_pred CcEEEeCChhHH-HHHHHHHhcCCCCeEEEeCCCC-cC-hHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 120 DRIVMSGGATGA-HETVAFCLADPGDAFLVPTPYY-PG-FDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 120 ~~i~it~G~~~a-l~~~~~~l~~~gd~Vlv~~P~y-~~-~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
..|++++|++.+ +.++...+..+|+.+++..... .. +....+.. |..+..+..+... .++++.+++.+.
T Consensus 67 ~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~-g~~~~~~~~~~~~--~~~~~~~~~~~~----- 138 (361)
T d2c0ra1 67 YKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLI-GDTHVAASSEASN--YMTLPKLQEIQL----- 138 (361)
T ss_dssp EEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHH-SCEEEEEECGGGT--TCSCCCGGGCCC-----
T ss_pred CEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhc-Cceeeeecccccc--ccchhhhhhhcc-----
Confidence 378888777654 4566667888899888666443 22 22334444 8888888766533 355666655433
Q ss_pred CCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecC
Q 011570 197 NIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSL 276 (483)
Q Consensus 197 ~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~ 276 (483)
..+.+. .+|.||.+.+ +.++.++|+++|+++++|.+.+. .. .+ ..+.. .+ +.+.|.
T Consensus 139 --~~~~~~---v~~~tg~~~~---~~~i~~~~~~~~al~~vDavss~---g~-~~-id~~~---------~d--i~~~s~ 194 (361)
T d2c0ra1 139 --QDNAAY---LHLTSNETIE---GAQFKAFPDTGSVPLIGDMSSDI---LS-RP-FDLNQ---------FG--LVYAGA 194 (361)
T ss_dssp --CTTEEE---EEEESEETTT---TEECSSCCCCTTSCEEEECTTTT---TS-SC-CCGGG---------CS--EEEEET
T ss_pred --cCcceE---EEEeccccee---cceEEEeeccCCceEEEEeeccc---cc-cc-ccccc---------ce--eEEEec
Confidence 222222 3567888888 56677889999999999999863 33 22 23222 23 334578
Q ss_pred ccccCCCCceEEEEEecChH------------HHHHHHHhhhcCCCChHHHHHHH----HhcCChhHHHHHHHHHHHHHH
Q 011570 277 SKDMGFPGFRVGIIYSYNDQ------------VVSCARKMSSFGLVSSQTQHLIA----TMLSDDQFVEKFIAESAKRIA 340 (483)
Q Consensus 277 SK~~g~~GlRiG~li~~~~~------------l~~~~~~~~~~~~~s~~~q~~~~----~~l~~~~~~~~~~~~~~~~l~ 340 (483)
+|.++.+|.-.+++.. ... ...............+.....+. ....... ......+.+
T Consensus 195 ~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 268 (361)
T d2c0ra1 195 QKNLGPSGVTVVIVRE-DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGG-----LEGVQQANR 268 (361)
T ss_dssp TTTTCCSSCEEEEEEG-GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTH-----HHHHHHHHH
T ss_pred ccccccccCcEEEEEh-HHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccc-----hHHHHHHHH
Confidence 9999877754333332 110 11111111111212222111111 1111111 122222333
Q ss_pred HHHHHHHHhhhcC-Cc-eeec---CCceEEEeeecCchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEe
Q 011570 341 ERHKAFTWGLSQV-GI-GCLK---SNAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCF 415 (483)
Q Consensus 341 ~~~~~l~~~L~~~-gi-~~~~---~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~ 415 (483)
+.+..+....... .. .... .....-+.+.+++..+ ..++... |+++||.++.|...- +.|||++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~------~~~~~~~-L~~~GI~~~~G~~~~----g~~RIs~ 337 (361)
T d2c0ra1 269 KKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEEL------EKEFVKA-SEQEGFVGLKGHRSV----GGLRASI 337 (361)
T ss_dssp HHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHH------HHHHHHH-HHHTTEESCBCCTTT----CSEEEEC
T ss_pred HHHHHhhhhhhhcccccccCCChhhccceEEEEECCCccc------HHHHHHH-HHHCCCEEecCCCcC----CeEEEEe
Confidence 3334444444333 11 1111 1122345666765432 2245544 467799999884321 2399999
Q ss_pred cc-CCHHHHHHHHHHHHHHHHHh
Q 011570 416 AN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 416 ~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
.. .+.|+++.+++.|+++.++.
T Consensus 338 ~~~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 338 YNAVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 65 59999999999999876653
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=8.5e-10 Score=106.49 Aligned_cols=290 Identities=9% Similarity=-0.022 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhhhCCCCCcC-CCcEEEeCChhHHHHHHH-HHhcCCCCeEEEeCCCCcCh--HHHHhhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFD-PDRIVMSGGATGAHETVA-FCLADPGDAFLVPTPYYPGF--DRDLRWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~-~~~i~it~G~~~al~~~~-~~l~~~gd~Vlv~~P~y~~~--~~~~~~~~G~~~~~v~ 172 (483)
.+.|+.|+++++ .+ +..|++++|++++...+. ..+..+++.+++....+... ....+. .|..++.+.
T Consensus 49 ~~~r~~l~~l~~--------~~~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 119 (360)
T d1bjna_ 49 EEAEKDFRDLLN--------VPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKK-YCTPNVFDA 119 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTT-TSEEEEEEC
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhh-cCccceeec
Confidence 466666777765 23 347888888876665554 45667778888777665432 222333 366555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
.+... ..+.+.++..+. .+++++.+++.+|-||+..+.. .+ .++.+++++++|.+.+. .. .+
T Consensus 120 ~~~~~--~~~~~~~~~~~~------~~~~~v~v~~~~~~t~~~~~~~---~i--~~~~~~~~v~vDa~~~~---~~-~~- 181 (360)
T d1bjna_ 120 KVTVD--GLRAVKPMREWQ------LSDNAAYMHYCPNETIDGIAID---ET--PDFGADVVVAADFSSTI---LS-RP- 181 (360)
T ss_dssp EEEET--TEEEECCGGGCC------CCSSCSCEEECSEETTTTEECC---CC--CCCCTTCCEEEECTTTT---TS-SC-
T ss_pred cccCC--Ccchhhhhhhhc------cCCceeEEEecccccccCcccc---ce--ecccccceeeeeeeccc---cc-ee-
Confidence 43322 233444433332 3677888888899999887743 33 34667889999988763 22 22
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHHH------------HHHHHhhhcCCCChHHHHHHHH
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQVV------------SCARKMSSFGLVSSQTQHLIAT 320 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l~------------~~~~~~~~~~~~s~~~q~~~~~ 320 (483)
.... +-.+.+.|.+|.++.++.- |+++..+.... ...................+..
T Consensus 182 vd~~-----------~~dv~~~ss~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
T d1bjna_ 182 IDVS-----------RYGVIYAGAQKNIGPAGLT-IVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGL 249 (360)
T ss_dssp CCGG-----------GCSEEEEETTTTTSSTTCE-EEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred eeec-----------cceeEEEEcccccccCCCc-eeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHH
Confidence 2211 2235567889998866543 44443221110 0111111112122221111111
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceee-cC---CceEEEeeecCchhhccChHHHHHHHHHHHHhcCeE
Q 011570 321 MLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCL-KS---NAGLFLWMDLHHLLKEQTYEAEMALWRVIINEVKLN 396 (483)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~-~~---~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~~~gV~ 396 (483)
+... ...........++..+...++...+...+.... .. .....+.+.+++... ..++... ++++||.
T Consensus 250 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~~------~~~~~~~-l~~~Gi~ 321 (360)
T d1bjna_ 250 VFKW-LKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSAL------DKLFLEE-SFAAGLH 321 (360)
T ss_dssp HHHH-HHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGGG------HHHHHHH-HHHTTEE
T ss_pred HHHH-HhhhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCccc------HHHHHHH-HHHCCCE
Confidence 1100 000111222233333444444444444432221 11 111245566765432 2245554 4567999
Q ss_pred eeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHh
Q 011570 397 VSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKN 437 (483)
Q Consensus 397 v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~ 437 (483)
++.|... -+.||+|+.. .++|+++.+++.|+++.++.
T Consensus 322 ~~~G~~~----~g~~Ris~~~~~t~edV~~li~~l~e~~~~~ 359 (360)
T d1bjna_ 322 ALKGHRV----VGGMRASIYNAMPLEGVKALTDFMVEFERRH 359 (360)
T ss_dssp CCBCCTT----TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCc----cCeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence 9887432 1349999966 59999999999999977654
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=1e-07 Score=94.48 Aligned_cols=311 Identities=13% Similarity=0.092 Sum_probs=171.3
Q ss_pred ccCCC---CCCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHh---cCCC----CeEEEeCCCCcChH
Q 011570 88 AIFQD---YHGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCL---ADPG----DAFLVPTPYYPGFD 157 (483)
Q Consensus 88 ~~Y~~---~~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l---~~~g----d~Vlv~~P~y~~~~ 157 (483)
..|+| .+|.-+.-=....++.++.| .+..|.-+-.|++..-..++.+. .+.+ ..+++..+.+....
T Consensus 93 TPYQPaEiSQG~LQalfEfQtmi~eLTG----MdvaNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~ 168 (471)
T d1wyub1 93 HPYQDPRTAQGALRLMWELGEYLKALTG----MDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSN 168 (471)
T ss_dssp CTTSCGGGCHHHHHHHHHHHHHHHHHHT----CSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCccccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccce
Confidence 44554 33433333344444555555 34445555677775555444332 1222 34555666665555
Q ss_pred HHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEE
Q 011570 158 RDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVC 237 (483)
Q Consensus 158 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~ 237 (483)
.......+..++.++.+.. ...+.+.+..... .++.++++.+|++..+..-. .+.+.+.+++.+..+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~------~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~g~~~~~ 237 (471)
T d1wyub1 169 PATASMAGYQVREIPSGPE--GEVDLEALKRELG------PHVAALMLTNPNTLGLFERR---ILEISRLCKEAGVQLYY 237 (471)
T ss_dssp HHHHHHTTCEEEEECBCTT--SSBCHHHHHHHCS------TTEEEEEECSSCTTSCCCTT---HHHHHHHHHHHTCEEEE
T ss_pred eeeeecccceeeccccccc--ccccchhhhhhhh------ccccceeeccCCCcccccch---hhhhHHHHHhccccccc
Confidence 5444445888888886543 3567777776543 37788999999886554433 56777777788877777
Q ss_pred ccccccCccCCCCCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHHHH----------
Q 011570 238 DEIYAATVFTKESSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCARK---------- 303 (483)
Q Consensus 238 Deay~~~~~~~~~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~~~---------- 303 (483)
|-+-......- . +.... ...++ +...++.|| ..|--+|++.+. +.+.+.+.-
T Consensus 238 ~~~~~~~~~~l-~---~p~~~--------g~div-~vg~~q~~G~P~~~GGP~~G~~a~~-~~~~R~~PGRiV~~~~~~~ 303 (471)
T d1wyub1 238 DGANLNAIMGW-A---RPGDM--------GFDVV-HLNLHKTFTVPHGGGGPGSGPVGVK-AHLAPYLPVPLVERGEEGF 303 (471)
T ss_dssp EGGGGGGTTTT-C---CHHHH--------TCSEE-ECCTTTTTCCCCTTSCCCCCCEEEC-GGGGGGCCSCEEEECSSCE
T ss_pred cccchhhhhhc-c---ccCcc--------ccccc-ccccccccccccccccccccceeeh-hhhhccCCCceecCCCccc
Confidence 76543221111 1 11111 12223 334455443 345557888884 433332210
Q ss_pred ---------hhhcCCCChHHHHH--HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCceeecCCceEE--Eeeec
Q 011570 304 ---------MSSFGLVSSQTQHL--IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQVGIGCLKSNAGLF--LWMDL 370 (483)
Q Consensus 304 ---------~~~~~~~s~~~q~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~gi~~~~~~~g~f--~~~~l 370 (483)
++.-..++..+..+ +..++.-.+ .+-+++..+....+..++.+.|+..|+++.. .+.+| +.+++
T Consensus 304 ~~~~~REqhIrRe~actnqaL~al~A~vYlsllG--~~GL~elA~~~~~~A~Yla~~L~~~G~~~~~-~~~ff~EFvv~~ 380 (471)
T d1wyub1 304 YLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG--LEGLKKAAALAVLNARYLKELLKEKGYRVPY-DGPSMHEFVAQP 380 (471)
T ss_dssp EEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCBCSS-CSSCCSCEEEBC
T ss_pred cccCCCcccccchhhhhhhHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHhhcCceecc-CcceeeEEeecC
Confidence 00001111212212 111221111 3346777777888889999999888887643 23222 12444
Q ss_pred CchhhccChHHHHHHHHHHHHhcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHHhh
Q 011570 371 HHLLKEQTYEAEMALWRVIINEVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLKNV 438 (483)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~~~ 438 (483)
+.... ..++.++|++ .|+.- +...|....++.+-+++.- .++++||.++++|++++++.+
T Consensus 381 ~~~~~------~~~i~k~L~~-~G~~~-~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 381 PEGFR------ALDLAKGLLE-LGFHP-PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp STTCC------HHHHHHHHHH-TTCCC-CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred CCCCC------HHHHHHHHHH-cCCCC-CcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 43222 2367888885 58842 3233433345678888866 499999999999999887654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.86 E-value=2.6e-09 Score=103.30 Aligned_cols=283 Identities=11% Similarity=0.034 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHhhhCCCCCcCCC-cEEEeCChhHHHHHHH-HHhcCCCCeEEEeCCCCcC--hHHHHhhhcCcEEEEee
Q 011570 97 PEFRNAVAKFMGKVRGNRITFDPD-RIVMSGGATGAHETVA-FCLADPGDAFLVPTPYYPG--FDRDLRWRTGVQLVPVV 172 (483)
Q Consensus 97 ~~Lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~-~~l~~~gd~Vlv~~P~y~~--~~~~~~~~~G~~~~~v~ 172 (483)
.+.|+.|+++++ ++.+ .|++++|++++...+. ..+..+++.+++....+.. +...+... +...+...
T Consensus 51 ~~~r~~l~~l~~--------~~~~~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~-~~~~~~~~ 121 (360)
T d1w23a_ 51 EQAQNLLRELLQ--------IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLL-GETHIAAS 121 (360)
T ss_dssp HHHHHHHHHHHT--------CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTT-SEEEEEEE
T ss_pred HHHHHHHHHHhC--------CCCCCEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHh-hhcceeec
Confidence 566777777776 3334 6888899887766554 4456777888877655432 22223332 65555555
Q ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCCCCc
Q 011570 173 CDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKESSF 252 (483)
Q Consensus 173 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~~~~ 252 (483)
..... ...++.++.... ... +++-+|-||.+.+ +.+|.++|+++|+++|+|.+.+. .. .+
T Consensus 122 ~~~~~--~~~~~~~~~~~~-------~~~---~~~~~~~tg~~~~---~~~i~~~~~~~g~l~ivDavqs~---g~-~~- 181 (360)
T d1w23a_ 122 TKANS--YQSIPDFSEFQL-------NEN---DAYLHITSNNTIY---GTQYQNFPEINHAPLIADMSSDI---LS-RP- 181 (360)
T ss_dssp CGGGT--SCSCCCGGGCCC-------CTT---EEEEEEESEETTT---TEECSSCCCCCSSCEEEECTTTT---TS-SC-
T ss_pred ccccc--ccchhhhhhccc-------ccc---cceeEecCCcccc---ceeeeeccccceeeEEeeccccc---cc-cc-
Confidence 43222 122333332211 122 2233466888888 67788899999999999999873 32 22
Q ss_pred chHHHhhhhccccCCCeEEEEecCccccCCCCceEEEEEecChHH------------HHHHHHhhhcCCCChHHHHH---
Q 011570 253 VSIAEIIDQDIACNRNLIHIVYSLSKDMGFPGFRVGIIYSYNDQV------------VSCARKMSSFGLVSSQTQHL--- 317 (483)
Q Consensus 253 ~s~~~l~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~li~~~~~l------------~~~~~~~~~~~~~s~~~q~~--- 317 (483)
..+.. .+.. +.+++|.++++|. .|+++..+... ...................+
T Consensus 182 id~~~---------~~vd--~~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (360)
T d1w23a_ 182 LKVNQ---------FGMI--YAGAQKNLGPSGV-TVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRN 249 (360)
T ss_dssp CCGGG---------CSEE--EEETTTTTSCTTC-EEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred ccccc---------ccce--EEeeccccccCCc-ceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhH
Confidence 23222 2333 4477777765553 44444421110 00010011111122221111
Q ss_pred -HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-Cceee---c-CCceEEEeeecCchhhccChHHHHHHHHHHHH
Q 011570 318 -IATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCL---K-SNAGLFLWMDLHHLLKEQTYEAEMALWRVIIN 391 (483)
Q Consensus 318 -~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~---~-~~~g~f~~~~l~~~~~~~~~~~~~~~~~~Ll~ 391 (483)
+..++..... .. ..+ +............... .+... + ..+.-.+.+++++... ..++... +.
T Consensus 250 ~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~------~~~~~~~-l~ 317 (360)
T d1w23a_ 250 VLDWIKDLGGA-EA-IAK---QNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEEL------NQQFLAK-AK 317 (360)
T ss_dssp HHHHHHHTTHH-HH-HHH---HHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHH------HHHHHHH-HH
T ss_pred HHHHHhhhhhh-HH-HHH---HHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCcc------HHHHHHH-HH
Confidence 1111211111 11 111 1122222222222222 11111 1 1111245667765322 2255554 45
Q ss_pred hcCeEeeCCCCCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Q 011570 392 EVKLNVSPGSSFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFMLK 436 (483)
Q Consensus 392 ~~gV~v~pg~~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l~~ 436 (483)
++||.++.|..+. +.+|+|+-+ .+.|+++.+++.|+++.++
T Consensus 318 ~~GI~~~~G~~~~----ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 318 EQGFVGLNGHRSV----GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HTTEESCBCCTTT----CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCeeeeCCCcc----CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 6799998885432 239999844 5999999999999998765
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.71 E-value=8.8e-07 Score=86.61 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=166.7
Q ss_pred CCcHHHHHHHHHHHHhhhCCCCCcCCCcEEEeCChhHHHHHHHHHhc-CCCCeEEEeCCCCcChHHHHhh---hcCcEEE
Q 011570 94 HGLPEFRNAVAKFMGKVRGNRITFDPDRIVMSGGATGAHETVAFCLA-DPGDAFLVPTPYYPGFDRDLRW---RTGVQLV 169 (483)
Q Consensus 94 ~g~~~Lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~---~~G~~~~ 169 (483)
+|.-++--.+..++.+..| .+.-+.-+-.|++.....++.+.. .....+++..-+++.+...... ..|.+++
T Consensus 104 QG~Lq~l~e~q~~l~eltG----md~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv 179 (437)
T d1wyua1 104 QGVLQATFEYQTMIAELAG----LEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHT----SSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHHhhC----CCccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEE
Confidence 3555666667777777766 455566666788866666654432 2446789999898876654332 2599999
Q ss_pred EeecCCCCCcccCHHHHHHHHHHHHhcCCceeEEEEeCCCCCCcCCCCHHHHHHHHHHHhhcCcEEEEccccccCccCCC
Q 011570 170 PVVCDSSNDFKVTMEALEAAYEKAQESNIRIKGVLITNPSNPLGTFLDRETLKDIVSFINEKNIHLVCDEIYAATVFTKE 249 (483)
Q Consensus 170 ~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l~~i~~~a~~~~~~iI~Deay~~~~~~~~ 249 (483)
.++.++.+ .+.+++ +.++.+|++++||. .|.+-+ ++++++++++.|.+++.|-.-. ....
T Consensus 180 ~v~~~~~~---~~~~~~----------~~~~Aavmi~~Pnt-~G~~ed---~~~i~~~~h~~G~l~~~~ad~~--al~~- 239 (437)
T d1wyua1 180 TLPLEGGR---TPLPEV----------GEEVGAVVVQNPNF-LGALED---LGPFAEAAHGAGALFVAVADPL--SLGV- 239 (437)
T ss_dssp EECCBTTB---CCCCCC----------CTTEEEEEEESSCT-TSBCCC---HHHHHHHHHHTTCEEEEECCTT--GGGT-
T ss_pred eeeccccc---chhhhh----------ccceeEEEEccccc-cccccc---hHHHHHHhhhccceEEeeechh--hhhc-
Confidence 99986533 222222 23789999999966 788744 7888999999998776653321 1222
Q ss_pred CCcchHHHhhhhccccCCCeEEEEecCccccC----CCCceEEEEEecChHHHHHH------------------------
Q 011570 250 SSFVSIAEIIDQDIACNRNLIHIVYSLSKDMG----FPGFRVGIIYSYNDQVVSCA------------------------ 301 (483)
Q Consensus 250 ~~~~s~~~l~~~~~~~~~~~vi~~~S~SK~~g----~~GlRiG~li~~~~~l~~~~------------------------ 301 (483)
..+..++ +-.|++++ +|.|| ..|--.|++.+. +.+.+.+
T Consensus 240 --l~~Pg~~---------GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~-~~l~r~lPgrivg~s~d~~G~~~~~l~lqtr 306 (437)
T d1wyua1 240 --LKPPGAY---------GADIAVGD-GQSLGLPMGFGGPHFGFLATK-KAFVRQLPGRLVSETVDVEGRRGFILTLQAR 306 (437)
T ss_dssp --BCCHHHH---------TCSEEEEE-CTTTTCCCGGGCSCCEEEEEC-GGGGGGCCSCCEEEEEBTTSCEEEEECCGGG
T ss_pred --ccccccc---------ccceEeec-cceeccccCCCcCcccccccc-chhhccccccccccccccCCcccceeecccc
Confidence 1222222 22344555 55543 223336777774 3222211
Q ss_pred ----HH--hhhcCCCC-hHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhcC-CceeecCCceEEE--eeecC
Q 011570 302 ----RK--MSSFGLVS-SQTQHLIATMLSDDQFVEKFIAESAKRIAERHKAFTWGLSQV-GIGCLKSNAGLFL--WMDLH 371 (483)
Q Consensus 302 ----~~--~~~~~~~s-~~~q~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-gi~~~~~~~g~f~--~~~l~ 371 (483)
++ ..+....+ .+....+..++...+ .+-+++..++...+.+++.+.|.+. |++...+. .+|- .++++
T Consensus 307 eqhIrRekatsnict~q~l~a~~a~~Y~~~lG--~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~-~~f~ef~v~~~ 383 (437)
T d1wyua1 307 EQYIRRAKAKSNITTNAQLTALMGAMYLAALG--PEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP 383 (437)
T ss_dssp SHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS
T ss_pred cccccccccccchhhHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC-CeeeEEEEECC
Confidence 00 11111111 111111111111111 2235666667778889999999887 77755433 2332 23433
Q ss_pred chhhccChHHHHHHHHHHHHhcCeEeeCCC-CCCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHH
Q 011570 372 HLLKEQTYEAEMALWRVIINEVKLNVSPGS-SFHCPNPGWFRVCFAN-MDDRTMEIALSRITSFM 434 (483)
Q Consensus 372 ~~~~~~~~~~~~~~~~~Ll~~~gV~v~pg~-~f~~~~~~~iRis~~~-~~~e~l~~~l~~L~~~l 434 (483)
. ...++.++|++ +|+.. |. .|....++.+.+++.. .+.++++.++++|++++
T Consensus 384 ~--------~~~~i~k~L~d-~G~~~--~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 384 K--------DPEAVRRALAE-RGFHG--ATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp S--------CHHHHHHHHHH-TTCCC--CEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred C--------CHHHHHHHHHh-CCCCC--CcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 2 13377888875 58842 21 1222235789999975 48999999999998763
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.32 E-value=9.7 Score=32.32 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=59.6
Q ss_pred cEEEeCChhHHHHHH-HHHhcCCCCeEEEeCCCCcChHHH---HhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhc
Q 011570 121 RIVMSGGATGAHETV-AFCLADPGDAFLVPTPYYPGFDRD---LRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQES 196 (483)
Q Consensus 121 ~i~it~G~~~al~~~-~~~l~~~gd~Vlv~~P~y~~~~~~---~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~ 196 (483)
.|++.+|++.+|-.. ...|.+.|..|++..-.-...... ++.. |.++..+..|- -|.+++++.+++..++
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~-g~~~~~~~~Dv-----t~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF-GYESSGYAGDV-----SKKEEISEVINKILTE 84 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT-TCCEEEEECCT-----TCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc-CCcEEEEEccC-----CCHHHHHHHHHHHHHh
Confidence 355555555556544 466889998888776543333322 2333 77788877653 3678888888776665
Q ss_pred CCceeEEEEeCC-CCCCcC--CCCHHHHHHHHHH
Q 011570 197 NIRIKGVLITNP-SNPLGT--FLDRETLKDIVSF 227 (483)
Q Consensus 197 ~~~~~~i~l~~P-~NPtG~--~~~~~~l~~i~~~ 227 (483)
-.+...++ +|. ..+.+. -++.++++++.+.
T Consensus 85 ~g~iDilv-nnag~~~~~~~~~~~~~~~~~~~~v 117 (251)
T d2c07a1 85 HKNVDILV-NNAGITRDNLFLRMKNDEWEDVLRT 117 (251)
T ss_dssp CSCCCEEE-ECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred cCCceeee-eccccccccccccccHHHHhhhhee
Confidence 55777544 444 333332 2466677777664
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=80.30 E-value=8.9 Score=32.71 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred CCcEEEeCChhHHHHH-HHHHhcCCCCeEEEeCCCCcChHHHH----hhhcCcEEEEeecCCCCCcccCHHHHHHHHHHH
Q 011570 119 PDRIVMSGGATGAHET-VAFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKA 193 (483)
Q Consensus 119 ~~~i~it~G~~~al~~-~~~~l~~~gd~Vlv~~P~y~~~~~~~----~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~ 193 (483)
-..++||.|+ .+|-. +...|.+.|-.|++..-.-....... +.. |.++..+..|- -|.+.+++.+++.
T Consensus 9 gK~alITGas-~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv-----~~~~~v~~~~~~~ 81 (260)
T d1h5qa_ 9 NKTIIVTGGN-RGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDV-----SNTDIVTKTIQQI 81 (260)
T ss_dssp TEEEEEETTT-SHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCT-----TCHHHHHHHHHHH
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccC-----CCHHHHHHHHHHH
Confidence 3345555554 45544 44667888977877765554443332 333 78888887763 3678888888776
Q ss_pred HhcCCceeEEEEeCC-CCCCcC--CCCHHHHHHHHHHH
Q 011570 194 QESNIRIKGVLITNP-SNPLGT--FLDRETLKDIVSFI 228 (483)
Q Consensus 194 ~~~~~~~~~i~l~~P-~NPtG~--~~~~~~l~~i~~~a 228 (483)
.++-.++..+ ++|. .++.+. -++.++++++.+..
T Consensus 82 ~~~~g~iDil-VnnAg~~~~~~~~~~~~~~~~~~~~~N 118 (260)
T d1h5qa_ 82 DADLGPISGL-IANAGVSVVKPATELTHEDFAFVYDVN 118 (260)
T ss_dssp HHHSCSEEEE-EECCCCCCCSCGGGCCHHHHHHHHHHH
T ss_pred HHHhCCCcEe-cccccccccCCHHHhcccccccccccc
Confidence 6655577754 4444 233332 25777888777753
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.17 E-value=6.4 Score=33.36 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=57.9
Q ss_pred CcEEEeCChhHHHHHHHHHhcCCCCeEEEeCCCCcChHHHHhhhcCcEEEEeecCCCCCcccCHHHHHHHHHHHHhcCCc
Q 011570 120 DRIVMSGGATGAHETVAFCLADPGDAFLVPTPYYPGFDRDLRWRTGVQLVPVVCDSSNDFKVTMEALEAAYEKAQESNIR 199 (483)
Q Consensus 120 ~~i~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 199 (483)
..++||.|++..=..+...|.+.|-.|++..-.-.......+.. +...+.+++. |.+++++.+++..++-.+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-GAHPVVMDVA-------DPASVERGFAEALAHLGR 77 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-TCEEEECCTT-------CHHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-CCeEEEEecC-------CHHHHHHHHHHHHHhcCC
Confidence 34555555553334444678888988888765544444445544 6665544332 567777777665554346
Q ss_pred eeEEEEeCC-CCCCcC--CCCHHHHHHHHHHH
Q 011570 200 IKGVLITNP-SNPLGT--FLDRETLKDIVSFI 228 (483)
Q Consensus 200 ~~~i~l~~P-~NPtG~--~~~~~~l~~i~~~a 228 (483)
+.. +++|. .++.+. -++.++++++.+.-
T Consensus 78 iDi-lVnnAG~~~~~~~~~~~~~~~~~~~~vN 108 (242)
T d1ulsa_ 78 LDG-VVHYAGITRDNFHWKMPLEDWELVLRVN 108 (242)
T ss_dssp CCE-EEECCCCCCCCCGGGCCHHHHHHHHHHH
T ss_pred ceE-EEECCcccccCchhhCcchhhhcccccc
Confidence 774 55554 222222 25777888877753
|