Citrus Sinensis ID: 011630
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 481 | ||||||
| 356526336 | 487 | PREDICTED: uncharacterized membrane prot | 0.989 | 0.977 | 0.797 | 0.0 | |
| 356521668 | 483 | PREDICTED: uncharacterized membrane prot | 0.989 | 0.985 | 0.801 | 0.0 | |
| 224097428 | 485 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.785 | 0.0 | |
| 224113259 | 485 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.781 | 0.0 | |
| 224097426 | 483 | predicted protein [Populus trichocarpa] | 1.0 | 0.995 | 0.807 | 0.0 | |
| 225445951 | 481 | PREDICTED: uncharacterized membrane prot | 0.991 | 0.991 | 0.771 | 0.0 | |
| 255544532 | 486 | conserved hypothetical protein [Ricinus | 1.0 | 0.989 | 0.783 | 0.0 | |
| 356526298 | 485 | PREDICTED: uncharacterized membrane prot | 0.997 | 0.989 | 0.769 | 0.0 | |
| 356523113 | 484 | PREDICTED: uncharacterized membrane prot | 0.995 | 0.989 | 0.765 | 0.0 | |
| 449453354 | 483 | PREDICTED: uncharacterized membrane prot | 1.0 | 0.995 | 0.784 | 0.0 |
| >gi|356526336|ref|XP_003531774.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/483 (79%), Positives = 431/483 (89%), Gaps = 7/483 (1%)
Query: 1 MGSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAK 60
MGSR+PSHQLSNGL+VSGRPEQPKEK PTMSSVAMPYTGGDIK+SGELGKMFDIPMD +K
Sbjct: 1 MGSRFPSHQLSNGLYVSGRPEQPKEKTPTMSSVAMPYTGGDIKRSGELGKMFDIPMDGSK 60
Query: 61 SRKSGPITGAPSRTGSFAGAATHSGSI-PNAAGRAGYNVSGPISSGG-PGSSSMKKTNSG 118
SRKSGPI+ APSRTGSFAGAA+HSG I NAA R+ Y SG +S+GG S+SMKKTNSG
Sbjct: 61 SRKSGPISNAPSRTGSFAGAASHSGPIMQNAAARSAYITSGNVSTGGMSASASMKKTNSG 120
Query: 119 PLNKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGS 178
PLNKHGEP+KKSSGPQSGG TRQNSGPIPP LP TGLITSGP LNSSGAPRK+SG
Sbjct: 121 PLNKHGEPVKKSSGPQSGGVTRQNSGPIPPVLPTTGLITSGP-----LNSSGAPRKVSGQ 175
Query: 179 LDSSGSIKMNSSSIAQNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGA 238
LDS+GS+K +SS +A N AVTT++ +D+YSFR+NFPKP+LW VILIFVMGFIAGGFILGA
Sbjct: 176 LDSTGSMKSHSSFVAHNPAVTTLSLDDEYSFRRNFPKPILWSVILIFVMGFIAGGFILGA 235
Query: 239 VHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVTGVVT 298
V N ILLIVV++LF +AA+F WN+C+GRKAI FIS +PD +LRTAK+GQFVKV+GVVT
Sbjct: 236 VRNAILLIVVVILFGAVAALFTWNSCFGRKAIVGFISRYPDAELRTAKNGQFVKVSGVVT 295
Query: 299 CGNVPLESSFRRVPRCVYTSTSLYEYRAWGSKPANPKHRHFTWGLRSLERHVVDFYISDF 358
CGNVPLESSF++VPRCVYTSTSLYEYR W SK ANPKHR FTWGLR+ ERHVVDFYISDF
Sbjct: 296 CGNVPLESSFQKVPRCVYTSTSLYEYRGWDSKAANPKHRRFTWGLRAAERHVVDFYISDF 355
Query: 359 QSGLRALVKTGSGARVTPFVDDSVVIDIKPENKDLSPEFIRWLGQKSLSSDDRLMRLKEG 418
QSGLRALVKTG GARVTP+VDDSVVID+ P NKD+SPEF+RWLG++ LSSDDR+M+LKEG
Sbjct: 356 QSGLRALVKTGYGARVTPYVDDSVVIDVNPANKDMSPEFLRWLGERKLSSDDRIMQLKEG 415
Query: 419 YIKEGSTVSVMGIVQRNDNVLMIVPPPEPIATGWQWTKCIFPASLEGIILRCEDTSNNDV 478
YIKEGSTVSVMG+VQRNDNVLMIVPPPEP+ TG QW KCIFPASLEGI+LRCEDTS DV
Sbjct: 416 YIKEGSTVSVMGVVQRNDNVLMIVPPPEPLTTGCQWAKCIFPASLEGIVLRCEDTSKIDV 475
Query: 479 IPV 481
IPV
Sbjct: 476 IPV 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521668|ref|XP_003529475.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224097428|ref|XP_002310930.1| predicted protein [Populus trichocarpa] gi|222850750|gb|EEE88297.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224113259|ref|XP_002316439.1| predicted protein [Populus trichocarpa] gi|222865479|gb|EEF02610.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224097426|ref|XP_002310929.1| predicted protein [Populus trichocarpa] gi|222850749|gb|EEE88296.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|225445951|ref|XP_002264547.1| PREDICTED: uncharacterized membrane protein At1g16860 [Vitis vinifera] gi|147844463|emb|CAN82086.1| hypothetical protein VITISV_031055 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255544532|ref|XP_002513327.1| conserved hypothetical protein [Ricinus communis] gi|223547235|gb|EEF48730.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356526298|ref|XP_003531755.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356523113|ref|XP_003530186.1| PREDICTED: uncharacterized membrane protein At1g16860 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449453354|ref|XP_004144423.1| PREDICTED: uncharacterized membrane protein At1g16860-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 481 | ||||||
| TAIR|locus:2015646 | 474 | AT1G16860 [Arabidopsis thalian | 0.985 | 1.0 | 0.729 | 4.1e-191 | |
| TAIR|locus:2037533 | 468 | AT1G78880 "AT1G78880" [Arabido | 0.972 | 1.0 | 0.725 | 7.1e-187 | |
| TAIR|locus:2132075 | 445 | AT4G22290 "AT4G22290" [Arabido | 0.715 | 0.773 | 0.511 | 1.2e-90 |
| TAIR|locus:2015646 AT1G16860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1852 (657.0 bits), Expect = 4.1e-191, P = 4.1e-191
Identities = 351/481 (72%), Positives = 388/481 (80%)
Query: 1 MGSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAK 60
MGSRYPSHQLSNGLFVSGRPEQPKE+APTMS+VAMPYTGGDIK+SGELGKMFDIP D K
Sbjct: 1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTK 60
Query: 61 SRKSGPITGAPSRTGSFAGAATHSGSIPNAAGRAGYNVXXXXXXXXXXXXXMKKTNSGPL 120
SRKSGPI GAPSR+GSFAG A P A GR ++ MKKTNSGPL
Sbjct: 61 SRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGRMSGSLASAGSVS------MKKTNSGPL 114
Query: 121 NKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSGSLD 180
+KHGEP+KKSSGPQSGG TRQNSG IP LPATGLITSGPI+SGPLNSSGAPRK+SG LD
Sbjct: 115 SKHGEPLKKSSGPQSGGVTRQNSGSIP-ILPATGLITSGPITSGPLNSSGAPRKVSGPLD 173
Query: 181 XXXXXXXXXXXIAQNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVH 240
+ NQAVTT+ EDD+S K+FPKPVLWLV+LIF+MGF+AGGFILGAVH
Sbjct: 174 SSGLMKSHMPTVVHNQAVTTLGPEDDFSCLKSFPKPVLWLVVLIFIMGFLAGGFILGAVH 233
Query: 241 NPXXXXXXXXXXXXXXXXXXWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVTGVVTCG 300
NP WN CWGR+ ITDFI+ +PD DLRTAK+GQ VKVTGVVTCG
Sbjct: 234 NPILLVVVAILFTVVAALFIWNICWGRRGITDFIARYPDADLRTAKNGQHVKVTGVVTCG 293
Query: 301 NVPLESSFRRVPRCVYTSTSLYEYRAWGSKPANPKHRHFTWGLRSLERHVVDFYISDFQS 360
NVPLESSF RVPRCVYTST LYEYR WGSKPAN HRHFTWGLRS ERHVVDFYISDFQS
Sbjct: 294 NVPLESSFHRVPRCVYTSTCLYEYRGWGSKPANSSHRHFTWGLRSSERHVVDFYISDFQS 353
Query: 361 GLRALVKTGSGARVTPFVDDSVVIDIKPENKDLSPEFIRWLGQKSLSSDDRLMRLKEGYI 420
GLRALVKTGSGA+VTP VDDSVVID K ++ +SP+F+RWLG+K+L+SDDR+MRLKEGYI
Sbjct: 354 GLRALVKTGSGAKVTPLVDDSVVIDFKQGSEQVSPDFVRWLGKKNLTSDDRIMRLKEGYI 413
Query: 421 KEGSTVSVMGIVQRNDNVLMIVPPPEPIATGWQWTKCIFPASLEGIILRCEDTSNNDVIP 480
KEGSTVSV+G+VQRNDNVLMIVP EP+A GWQW +C FP SLEGI+LRCED+SN D IP
Sbjct: 414 KEGSTVSVIGVVQRNDNVLMIVPSSEPLAAGWQWRRCTFPTSLEGIVLRCEDSSNVDAIP 473
Query: 481 V 481
V
Sbjct: 474 V 474
|
|
| TAIR|locus:2037533 AT1G78880 "AT1G78880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132075 AT4G22290 "AT4G22290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 481 | |||
| PF12483 | 160 | GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 Thi | 99.12 | |
| PF13829 | 224 | DUF4191: Domain of unknown function (DUF4191) | 93.08 | |
| PF13567 | 176 | DUF4131: Domain of unknown function (DUF4131) | 88.59 |
| >PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=101.39 Aligned_cols=103 Identities=23% Similarity=0.402 Sum_probs=71.4
Q ss_pred ceeeeeeeeeeeeeeEEEEeCCCceeEEE-ecCCCceeeeeeecceEEc-CCCCCCCCCHHHHHhhhhcCCCCCCceeEE
Q 011630 338 HFTWGLRSLERHVVDFYISDFQSGLRALV-KTGSGARVTPFVDDSVVID-IKPENKDLSPEFIRWLGQKSLSSDDRLMRL 415 (481)
Q Consensus 338 r~~W~l~~~Er~~~dFyIsD~~sG~RALV-kaG~GarVtP~Iees~VvD-~~~~~kd~S~el~~wL~~rnLSsd~r~mRy 415 (481)
...|++++.++..++|||.|.+ | +.+| ....++.+.- .++.| +.+........+..|+...- ..+.+.+||
T Consensus 16 ~~~~~~v~~~~~~vPF~L~D~t-g-~v~V~~~p~~a~l~l----~~v~~~f~p~~~~~~~~~~~~~~~~~-~~~~~G~r~ 88 (160)
T PF12483_consen 16 SSSWRTVSSGTSEVPFYLEDGT-G-RVRVVDDPEGAELDL----ETVYDRFEPSPSSPPDGLFGFFSGER-ELEPKGYRY 88 (160)
T ss_pred cccEEEEEcceeEcCEEEECCc-e-EEEEecCcccCccce----eeEEEEeEECCCCccceeeeeeccce-eccccccEE
Confidence 4569999999999999999975 4 6666 4455665533 34444 22222223333333333222 112677999
Q ss_pred EeeeecCCCEEEEEEEE-EecCceeeEeCCCCc
Q 011630 416 KEGYIKEGSTVSVMGIV-QRNDNVLMIVPPPEP 447 (481)
Q Consensus 416 kEgiI~eGs~VsViGvv-~r~~~vlmI~pP~E~ 447 (481)
+|++|++|++|+|+|.+ .++++.++|.+|.+.
T Consensus 89 ~E~~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g 121 (160)
T PF12483_consen 89 TEEILPVGTPLTVVGELVRDGDGNLVIQPPKDG 121 (160)
T ss_pred EEEEcCCCCEEEEEEEEEEcCCCcEEEeCCCCC
Confidence 99999999999999999 667789999999886
|
There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity |
| >PF13829 DUF4191: Domain of unknown function (DUF4191) | Back alignment and domain information |
|---|
| >PF13567 DUF4131: Domain of unknown function (DUF4131) | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00