Citrus Sinensis ID: 011666

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
cccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHcccccccccc
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcc
msantdldnttsplleaggdddhgeeeaTSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLcgqgfgakHYRMLGIYLQASWITSLFFSIIISFLWIYTEPIlillhqdpsiSKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFehtwegfsfeSFSFILTILKLALPSAAMVCLEYWAFEILVFLAglmpnselTTSLIAMCVNTESVAYMITYGLSAAASTrvsnelgagnpdqakNAMAVTVKLSVLLALVVVLALGfghniwagffsnsPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRkwtkvdmt
msantdldnttsplleaggdddhgeeeatssrrrWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLitlrrkwtkvdmt
MSANTDLDNTTSPLLEAggdddhgeeeATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAswitslffsiiisflwiYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMavtvklsvllalvvvlalGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
*********************************RWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAAST***************NAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK****
**********************************WWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
********NTTSPLLEAGG**************RWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
********************************RRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTK****
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MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q9LUH2477 MATE efflux family protei yes no 0.972 0.979 0.669 0.0
Q9LUH3469 MATE efflux family protei no no 0.954 0.976 0.665 1e-177
Q9SIA5476 MATE efflux family protei no no 0.937 0.945 0.412 9e-92
Q8RWF5483 MATE efflux family protei no no 0.895 0.890 0.408 2e-87
Q9SIA1477 MATE efflux family protei no no 0.939 0.945 0.400 3e-87
Q9SIA3476 MATE efflux family protei no no 0.929 0.936 0.393 2e-86
Q9SIA4476 MATE efflux family protei no no 0.941 0.949 0.398 3e-85
Q8GXM8476 MATE efflux family protei no no 0.937 0.945 0.381 3e-85
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.968 0.917 0.349 1e-73
Q9USK3539 Uncharacterized transport yes no 0.914 0.814 0.322 5e-62
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function desciption
 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/472 (66%), Positives = 381/472 (80%), Gaps = 5/472 (1%)

Query: 10  TTSPLLE--AGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPL 67
           T+SPLL+   GG+D+ G    +S+     ++V+D+EEAK Q+++SLPMIL NVFYY IP+
Sbjct: 6   TSSPLLDDHVGGEDERGRRSRSSTLV---QKVIDVEEAKAQMIYSLPMILTNVFYYCIPI 62

Query: 68  VSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQ 127
            SVM A HLGQLELAGATLANSWATV+GFAFM+GLSG+LETLCGQGFGAK YRMLG++LQ
Sbjct: 63  TSVMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQ 122

Query: 128 ASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRF 187
           +S I SL FSI+I+  W +TE I  LL QDPSISKQAALYMKY  PGL+AYG +QNILRF
Sbjct: 123 SSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRF 182

Query: 188 LQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLC 247
            QTQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L L TYV+C
Sbjct: 183 CQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMC 242

Query: 248 AKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLI 307
           ++KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN E+ TSL+
Sbjct: 243 SEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLV 302

Query: 308 AMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLALVVVLALG 367
           A+CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A +V+VKLS++LAL VV+ L 
Sbjct: 303 AICVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLL 362

Query: 368 FGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLAT 427
            GH+ W G FS+S  I +EFASL   LA SITLDS+QGVLSGVARGCGWQ L    NLAT
Sbjct: 363 VGHDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLAT 422

Query: 428 FYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDM 479
           FY IGMPIAA  GFKL  Y KGLWIGLICG+FCQ+SSLLL+T+ RKWTK+++
Sbjct: 423 FYLIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNV 474
Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q9USK3|YJ2D_SCHPO Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.13 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
224114908485 predicted protein [Populus trichocarpa] 0.987 0.977 0.758 0.0
225461494487 PREDICTED: MATE efflux family protein AL 0.989 0.975 0.75 0.0
255574668484 TRANSPARENT TESTA 12 protein, putative [ 0.985 0.977 0.708 0.0
147858860 1134 hypothetical protein VITISV_039558 [Viti 0.95 0.402 0.718 0.0
297835374476 hypothetical protein ARALYDRAFT_479865 [ 0.968 0.976 0.670 0.0
18403810477 mate efflux domain-containing protein [A 0.972 0.979 0.669 0.0
302142981438 unnamed protein product [Vitis vinifera] 0.887 0.972 0.769 1e-179
225461496493 PREDICTED: MATE efflux family protein AL 0.920 0.896 0.737 1e-175
15229468469 mate efflux domain-containing protein [A 0.954 0.976 0.665 1e-175
297835372469 mate efflux family protein [Arabidopsis 0.956 0.978 0.664 1e-174
>gi|224114908|ref|XP_002316890.1| predicted protein [Populus trichocarpa] gi|222859955|gb|EEE97502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/480 (75%), Positives = 410/480 (85%), Gaps = 6/480 (1%)

Query: 1   MSANTDLDNTTSPLLEAGGDDDHGEEEATSSRRRWWKRVLDLEEAKNQVVFSLPMILANV 60
           M +NT  +   +PLLE     +   EE  + R RW K+VLD+EEAKNQ++FSLPMIL NV
Sbjct: 1   MLSNTSFE--AAPLLE---RSNSSVEEGENKRLRW-KKVLDVEEAKNQILFSLPMILTNV 54

Query: 61  FYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYR 120
           FYY I LVSVM AGHLG+LELAGATLANSWATVTGFAFM+GLSGALETLCGQGFGAK YR
Sbjct: 55  FYYLITLVSVMFAGHLGELELAGATLANSWATVTGFAFMVGLSGALETLCGQGFGAKMYR 114

Query: 121 MLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGV 180
           MLGIYLQAS I S  F I IS +W YTEPIL+LLHQD  +S  AALYMKYLIPGL AYG+
Sbjct: 115 MLGIYLQASCIISFIFCITISVIWFYTEPILLLLHQDAHVSMTAALYMKYLIPGLFAYGI 174

Query: 181 IQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLM 240
           +QNILRFLQTQS+V+P + FS +P+ IH GIAYA V+ T+LGFKGA LAAS+SLWIS LM
Sbjct: 175 MQNILRFLQTQSVVMPPVVFSLVPLCIHIGIAYALVHYTALGFKGAPLAASISLWISFLM 234

Query: 241 LVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNS 300
           L  YV+CAKKFEHTW GFSFESF +IL  LKLALPSAAMVCLEYWAFEILVFLAGLMP+S
Sbjct: 235 LAIYVICAKKFEHTWAGFSFESFHYILHDLKLALPSAAMVCLEYWAFEILVFLAGLMPSS 294

Query: 301 ELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVLLAL 360
           E++TSLIA+CVNTE+VAYM+TYGLSAAASTRVSNELG GNP++AKNAMAVT+KLSVLLAL
Sbjct: 295 EISTSLIAICVNTETVAYMLTYGLSAAASTRVSNELGEGNPERAKNAMAVTLKLSVLLAL 354

Query: 361 VVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLA 420
           +VVLAL FGHNIWAG FS+SP I KEFAS+ P LA+SITLDSVQGV SGVARGCGWQHLA
Sbjct: 355 LVVLALAFGHNIWAGLFSSSPTIAKEFASMAPFLAISITLDSVQGVFSGVARGCGWQHLA 414

Query: 421 VWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDMT 480
           V+ANLATFY IGMP+A +LGFKL LYVKGLWIGLI GL CQA +LLLIT+R  WT  D++
Sbjct: 415 VYANLATFYCIGMPVACVLGFKLKLYVKGLWIGLISGLCCQAGTLLLITIRTNWTATDLS 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225461494|ref|XP_002282547.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574668|ref|XP_002528243.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223532329|gb|EEF34128.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147858860|emb|CAN78689.1| hypothetical protein VITISV_039558 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297835374|ref|XP_002885569.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] gi|297331409|gb|EFH61828.1| hypothetical protein ARALYDRAFT_479865 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18403810|ref|NP_566730.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274226|sp|Q9LUH2.1|ALF5_ARATH RecName: Full=MATE efflux family protein ALF5; AltName: Full=Protein ABERRANT LATERAL ROOT FORMATION 5; AltName: Full=Protein DTX19 gi|13384114|gb|AAK21273.1|AF337954_1 aberrant lateral root formation 5 [Arabidopsis thaliana] gi|9294512|dbj|BAB02774.1| unnamed protein product [Arabidopsis thaliana] gi|17064870|gb|AAL32589.1| Unknown protein [Arabidopsis thaliana] gi|332643256|gb|AEE76777.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302142981|emb|CBI20276.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461496|ref|XP_002282551.1| PREDICTED: MATE efflux family protein ALF5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15229468|ref|NP_188997.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|75274227|sp|Q9LUH3.1|LAL5_ARATH RecName: Full=MATE efflux family protein LAL5; AltName: Full=Protein DTX18; AltName: Full=Protein LIKE ALF5 gi|9294511|dbj|BAB02773.1| unnamed protein product [Arabidopsis thaliana] gi|17979043|gb|AAL49789.1| unknown protein [Arabidopsis thaliana] gi|20465841|gb|AAM20025.1| unknown protein [Arabidopsis thaliana] gi|332643255|gb|AEE76776.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297835372|ref|XP_002885568.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297331408|gb|EFH61827.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2088020477 ALF5 "AT3G23560" [Arabidopsis 0.977 0.983 0.623 1.4e-151
TAIR|locus:2088010469 AT3G23550 "AT3G23550" [Arabido 0.916 0.938 0.640 3.4e-148
TAIR|locus:2156737486 AT5G52450 "AT5G52450" [Arabido 0.9 0.888 0.425 1e-93
TAIR|locus:2027834476 AT1G73700 "AT1G73700" [Arabido 0.904 0.911 0.428 1.1e-92
TAIR|locus:2040839480 AT2G34360 "AT2G34360" [Arabido 0.885 0.885 0.408 1.8e-87
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.897 0.896 0.406 3.8e-85
TAIR|locus:2050190476 DTX1 "AT2G04040" [Arabidopsis 0.920 0.928 0.404 4.9e-85
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.914 0.901 0.380 6.4e-83
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.914 0.922 0.391 4.5e-82
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.9 0.894 0.389 5.8e-82
TAIR|locus:2088020 ALF5 "AT3G23560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1479 (525.7 bits), Expect = 1.4e-151, P = 1.4e-151
 Identities = 293/470 (62%), Positives = 346/470 (73%)

Query:    10 TTSPLLEAXXXXXXXXXXATSSRRRWWKRVLDLEEAKNQVVFSLPMILANVFYYAIPLVS 69
             T+SPLL+            + S     K V+D+EEAK Q+++SLPMIL NVFYY IP+ S
Sbjct:     6 TSSPLLDDHVGGEDERGRRSRSSTLVQK-VIDVEEAKAQMIYSLPMILTNVFYYCIPITS 64

Query:    70 VMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRMLGIYLQAX 129
             VM A HLGQLELAGATLANSWATV+GFAFM+GLSG+LETLCGQGFGAK YRMLG++LQ+ 
Sbjct:    65 VMFASHLGQLELAGATLANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSS 124

Query:   130 XXXXXXXXXXXXXXXXYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQ 189
                             +TE I  LL QDPSISKQAALYMKY  PGL+AYG +QNILRF Q
Sbjct:   125 CIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQ 184

Query:   190 TQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGFKGASLAASVSLWISMLMLVTYVLCAK 249
             TQSI+ PL+ FS +P+ I+   AY  VY+  LGF GA +A S+SLWI+ L L TYV+C++
Sbjct:   185 TQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSE 244

Query:   250 KFEHTWEGFSFESFSFILTILKLALPSAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAM 309
             KF+ TW GFS ESF +I+  L L+LPSAAMVCLEYWAFEILVFLAG+MPN E+ TSL+A+
Sbjct:   245 KFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAI 304

Query:   310 CVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFG 369
             CVNTE+++YM+TYGLSAAASTRVSNELGAGN   AK A                     G
Sbjct:   305 CVNTEAISYMLTYGLSAAASTRVSNELGAGNVKGAKKATSVSVKLSLVLALGVVIVLLVG 364

Query:   370 HNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFY 429
             H+ W G FS+S  I +EFASL   LA SITLDS+QGVLSGVARGCGWQ L    NLATFY
Sbjct:   365 HDGWVGLFSDSYVIKEEFASLRFFLAASITLDSIQGVLSGVARGCGWQRLVTVINLATFY 424

Query:   430 FIGMPIAAILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVDM 479
              IGMPIAA  GFKL  Y KGLWIGLICG+FCQ+SSLLL+T+ RKWTK+++
Sbjct:   425 LIGMPIAAFCGFKLKFYAKGLWIGLICGIFCQSSSLLLMTIFRKWTKLNV 474
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009636 "response to toxic substance" evidence=ISS
TAIR|locus:2088010 AT3G23550 "AT3G23550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027834 AT1G73700 "AT1G73700" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040839 AT2G34360 "AT2G34360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050190 DTX1 "AT2G04040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9USK3YJ2D_SCHPONo assigned EC number0.32250.91450.8144yesno
Q9LUH2ALF5_ARATHNo assigned EC number0.66940.97290.9790yesno
A7KAU2S47A1_RABITNo assigned EC number0.33110.95830.8098yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027712001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (487 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-162
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-57
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-55
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-55
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-42
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-38
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 9e-37
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-31
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-27
pfam01554161 pfam01554, MatE, MatE 6e-26
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-26
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-23
pfam01554161 pfam01554, MatE, MatE 5e-21
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 7e-19
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 5e-16
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 6e-16
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 2e-15
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-15
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-13
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-11
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 9e-09
cd13149434 cd13149, MATE_like_2, Uncharacterized subfamily of 6e-08
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 2e-07
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 6e-06
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.002
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  464 bits (1197), Expect = e-162
 Identities = 207/434 (47%), Positives = 297/434 (68%), Gaps = 1/434 (0%)

Query: 44  EAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLS 103
           EAK  +  + P++L ++  Y++ +VSV+  GHLG+LELA A+LA+S+A VTGF+ ++GL+
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 104 GALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQ 163
            AL+TLCGQ FGAK+Y+++G+YLQ + +  L   + IS LW+ TEPIL+LL QDP I++ 
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 164 AALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVYLTSLGF 223
           A  Y+++LIPGL AY + + + R+LQ Q IV+PL++ S + + ++  + Y  V++  LGF
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 224 KGASLAASVSLWISMLMLVTYVLCAKKFEHTWEGFSFESFSFILTILKLALPSAAMVCLE 283
            GA+LA S+S W+ +++L+ Y+  +K  + TW GFS E+F      LKLA+PSA M+CLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 284 YWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQ 343
           +WAFEILV LAGL+P   +  +  ++C+ T S+ YMI  G+S AAS RV NELGAGNP +
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 344 AKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSV 403
           AK A  V + LS+++ +VV + L    ++WA  F++  E+I   A L P+LAL    D +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 404 QGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLYVKGLWIGLICGLFCQAS 463
           Q VLSGV RGCG Q L  + NL  +Y IG+P+  +L F L L +KGLWIGLI GL  QA 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 464 SLLLITLRRKWTKV 477
            LLLI LR  W K 
Sbjct: 420 ILLLIILRTDWDKE 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240554 cd13149, MATE_like_2, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 100.0
PRK10459492 colanic acid exporter; Provisional 99.98
COG2244480 RfbX Membrane protein involved in the export of O- 99.96
PRK10189 478 MATE family multidrug exporter; Provisional 99.89
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.89
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.88
PRK01766 456 multidrug efflux protein; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.83
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.81
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.77
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.76
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.75
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.74
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.73
PRK10459492 colanic acid exporter; Provisional 99.71
PRK15099416 O-antigen translocase; Provisional 99.7
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.66
COG2244480 RfbX Membrane protein involved in the export of O- 99.62
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.29
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.26
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 99.13
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.05
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.53
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.36
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.21
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.2
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.0
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.92
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.57
COG4267467 Predicted membrane protein [Function unknown] 96.77
COG4267 467 Predicted membrane protein [Function unknown] 82.62
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9e-58  Score=447.28  Aligned_cols=433  Identities=27%  Similarity=0.409  Sum_probs=412.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666           42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM  121 (480)
Q Consensus        42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  121 (480)
                      ++..|+++++++|++++++.+.+++++|+.++||+|++++++.++++++..++ ..+..|++.|..+.++|++|++|+++
T Consensus        13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~~   91 (455)
T COG0534          13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRKK   91 (455)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchHH
Confidence            46899999999999999999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHH
Q 011666          122 LGIYLQASWITSLFFSIIISFL-WIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFF  200 (480)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  200 (480)
                      +++..++++.+.++++++..++ ..+.++++.+++.++|+.+.+.+|+++..++.++..+..++.+.+|+.||+|.+++.
T Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~  171 (455)
T COG0534          92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI  171 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            9999999999999999888776 999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCChhhHHHHHHHHHHHhHHH
Q 011666          201 SALPMAIHFGIAYAFVYL-TS-LGFKGASLAASVSLWISMLMLVTYVLCAKK-FEHTWEGFSFESFSFILTILKLALPSA  277 (480)
Q Consensus       201 ~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~  277 (480)
                      ++++.++|+++|++|+++ ++ +|+.|+++||++++.+.+++..++++++++ .+....+..+.+++..|++++.|+|.+
T Consensus       172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~  251 (455)
T COG0534         172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIF  251 (455)
T ss_pred             HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHH
Confidence            999999999999999998 46 999999999999999999999999977765 233333444556799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 011666          278 AMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLSVL  357 (480)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  357 (480)
                      +++..+...+...+.+.+++|  ++.+|+|+++.++.++.+++..++++++.+++++++|+||+|++++..+.+..+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~  329 (455)
T COG0534         252 LESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLL  329 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998  889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHH
Q 011666          358 LALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAA  437 (480)
Q Consensus       358 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~  437 (480)
                      ++...+++++++++++..+|++|+|+.+.+..++++.+...++++++.+..+.+||.||++.++++++++.|.+.+|+.+
T Consensus       330 ~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~  409 (455)
T COG0534         330 IALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAY  409 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHccCccccc
Q 011666          438 ILGFKLSLYVKGLWIGLICGLFCQASSLLLITLRRKWTKVD  478 (480)
Q Consensus       438 ~l~~~~~~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~~~~  478 (480)
                      ++.... +|..|+|++...++.+..+...++++|++|++..
T Consensus       410 ~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (455)
T COG0534         410 LLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKA  449 (455)
T ss_pred             HHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            997765 8999999999999999999999999999997754

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-16
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 2e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/446 (21%), Positives = 186/446 (41%), Gaps = 19/446 (4%)
Query: 43  EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANS-WATVTGFAFMIG 101
           +EA N +  + P+++A+V    +  V  + AG +  +++A  ++A S W  +    F +G
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW--LPSILFGVG 66
Query: 102 LSGALETLCGQGFGAKHYRMLGIYLQAXXXXXXXXXXXXXXXXXYTEPILILLHQDPSIS 161
           L  AL  +  Q  GA     +   +                    T+ I+  +  + +++
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126
Query: 162 KQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY---- 217
            +   YM  +I  + AY + Q +  F    S+  P +    + + ++  + + FVY    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186
Query: 218 LTSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALP 275
              LG  G  +A ++  WI +L+L+ Y++ +K+  H   +E F       ++ + +L  P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246
Query: 276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNE 335
            AA +  E   F ++  L   + ++ +    +A+  N  S+ +M    + AA S RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHK 304
Query: 336 LGAGNPDQAKNAMXXXXXXXXXXXXXXXXXXGFGHNIWAGFFSNSPEIIKEFASLTPLLA 395
           LG  +   A  A                          A  ++ +  ++     L    A
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364
Query: 396 LSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGF-----KLSLYVKGL 450
           +   +D+VQ V +G  RG             +++ +G+P   ILG      +  L  KG 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424
Query: 451 WIGLICGLFCQASSLLLITLRRKWTK 476
           W+G I GL   +++ L++  R  W +
Sbjct: 425 WLGFIIGL---SAAALMLGQRLYWLQ 447
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 5e-92
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  286 bits (734), Expect = 5e-92
 Identities = 101/447 (22%), Positives = 194/447 (43%), Gaps = 15/447 (3%)

Query: 43  EEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGL 102
           +EA N +  + P+++A+V    +  V  + AG +  +++A  ++A S   +    F +GL
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASI-WLPSILFGVGL 67

Query: 103 SGALETLCGQGFGAKHYRMLGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISK 162
             AL  +  Q  GA     +   +    I +L  S+ I  +   T+ I+  +  + +++ 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127

Query: 163 QAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFSALPMAIHFGIAYAFVY----L 218
           +   YM  +I  + AY + Q +  F    S+  P +    + + ++  + + FVY     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187

Query: 219 TSLGFKGASLAASVSLWISMLMLVTYVLCAKKFEH--TWEGFSFESFSFILTILKLALPS 276
             LG  G  +A ++  WI +L+L+ Y++ +K+  H   +E F       ++ + +L  P 
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV 247

Query: 277 AAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNEL 336
           AA +  E   F ++  L   + ++ +    +A+  N  S+ +M    + AA S RV ++L
Sbjct: 248 AAALFFEVTLFAVVALLVAPLGSTVVAAHQVAL--NFSSLVFMFPMSIGAAVSIRVGHKL 305

Query: 337 GAGNPDQAKNAMAVTVKLSVLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLAL 396
           G  +   A  A  V +   +  A +  L         A  ++ +  ++     L    A+
Sbjct: 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAI 365

Query: 397 SITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPIAAILGFKLSLY-----VKGLW 451
              +D+VQ V +G  RG             +++ +G+P   ILG    L       KG W
Sbjct: 366 YQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFW 425

Query: 452 IGLICGLFCQASSLLLITLRRKWTKVD 478
           +G I GL   A  +L   L     + D
Sbjct: 426 LGFIIGLSAAA-LMLGQRLYWLQKQSD 451
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 91.51
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 80.34
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1e-49  Score=396.89  Aligned_cols=431  Identities=23%  Similarity=0.349  Sum_probs=396.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhccCcccH
Q 011666           42 LEEAKNQVVFSLPMILANVFYYAIPLVSVMSAGHLGQLELAGATLANSWATVTGFAFMIGLSGALETLCGQGFGAKHYRM  121 (480)
Q Consensus        42 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~  121 (480)
                      ++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|+++
T Consensus         8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~~~   86 (460)
T 3mkt_A            8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQHK   86 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChhH
Confidence            46889999999999999999999999999999999999999999999998887 88889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 011666          122 LGIYLQASWITSLFFSIIISFLWIYTEPILILLHQDPSISKQAALYMKYLIPGLVAYGVIQNILRFLQTQSIVIPLIFFS  201 (480)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  201 (480)
                      .++.+++++.+..+++++++++..+.++++.+++.+++..+.+..|+++..++.++..+.....+++|+.||++.++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  166 (460)
T 3mkt_A           87 IPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG  166 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence            99999999999999999877667788888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhccccccc--ccCCChhhHHHHHHHHHHHhH
Q 011666          202 ALPMAIHFGIAYAFVYL-T---SLGFKGASLAASVSLWISMLMLVTYVLCAKKFEHT--WEGFSFESFSFILTILKLALP  275 (480)
Q Consensus       202 ~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p  275 (480)
                      +++.++|+++++++++. +   ++|+.|+++|+.+++.+..++..++.+++++.+..  ++++.+.+++..|+++++++|
T Consensus       167 ~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p  246 (460)
T 3mkt_A          167 FIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP  246 (460)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhH
Confidence            99999999999999985 2   69999999999999999999988888665543221  122223456788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 011666          276 SAAMVCLEYWAFEILVFLAGLMPNSELTTSLIAMCVNTESVAYMITYGLSAAASTRVSNELGAGNPDQAKNAMAVTVKLS  355 (480)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  355 (480)
                      .+++...+.+...+++.+++++|  ++++++|++++++.++..++..+++++..|.+++++|+||.++.++..+++.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~  324 (460)
T 3mkt_A          247 VAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTG  324 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999996  7899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcccccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHH
Q 011666          356 VLLALVVVLALGFGHNIWAGFFSNSPEIIKEFASLTPLLALSITLDSVQGVLSGVARGCGWQHLAVWANLATFYFIGMPI  435 (480)
Q Consensus       356 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  435 (480)
                      ..+++++++++.++++++..+|.+|+++.+.+..++++++++.++.+++....+++++.||++.+++.++++.|++++|+
T Consensus       325 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  404 (460)
T 3mkt_A          325 LATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPT  404 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHH----hc-CCchhhHHHHHHHHHHHHHHHHHHHHccCcc
Q 011666          436 AAILGFK----LS-LYVKGLWIGLICGLFCQASSLLLITLRRKWT  475 (480)
Q Consensus       436 ~~~l~~~----~~-~g~~g~~~a~~~~~~i~~~~~~~~~~~~~~~  475 (480)
                      ++++...    ++ +|..|+|+++.+++++..++..++++|+.++
T Consensus       405 ~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          405 GYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999765    55 9999999999999999998877776665443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00