Citrus Sinensis ID: 011695
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| 225429331 | 475 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 1.0 | 0.855 | 0.0 | |
| 255555225 | 481 | conserved hypothetical protein [Ricinus | 0.997 | 0.993 | 0.865 | 0.0 | |
| 449469112 | 475 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.995 | 0.835 | 0.0 | |
| 356536133 | 462 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 1.0 | 0.820 | 0.0 | |
| 356575704 | 463 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 1.0 | 0.820 | 0.0 | |
| 224056216 | 410 | predicted protein [Populus trichocarpa] | 0.851 | 0.995 | 0.882 | 0.0 | |
| 255538120 | 470 | conserved hypothetical protein [Ricinus | 0.974 | 0.993 | 0.763 | 0.0 | |
| 224103701 | 443 | predicted protein [Populus trichocarpa] | 0.920 | 0.995 | 0.809 | 0.0 | |
| 449482704 | 466 | PREDICTED: uncharacterized LOC101206617 | 0.968 | 0.995 | 0.759 | 0.0 | |
| 449450261 | 467 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.993 | 0.757 | 0.0 |
| >gi|225429331|ref|XP_002271922.1| PREDICTED: uncharacterized protein LOC100257657 [Vitis vinifera] gi|147835619|emb|CAN68554.1| hypothetical protein VITISV_017460 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/479 (85%), Positives = 445/479 (92%), Gaps = 4/479 (0%)
Query: 1 MEKKQGFFSALKQEVVRGLSPSRSRAASPARSMSPISSLLRRRKNQSSNHHHHQVATQEQ 60
M++KQGFF+ALK+EVVRGLSP+RSRA SP R+ SP+S LLRRRK H+ VA E
Sbjct: 1 MDRKQGFFAALKEEVVRGLSPARSRAKSPGRAGSPMSGLLRRRKQS----HNQYVANPEP 56
Query: 61 LVSRSGSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYR 120
L+SRSGSLRPVVGE L PLMEGPDPDG+E+GESKR G GLG+W+KGQLSRTPSV++ AYR
Sbjct: 57 LISRSGSLRPVVGETLTPLMEGPDPDGSEIGESKRSGLGLGHWMKGQLSRTPSVTSAAYR 116
Query: 121 RSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNS 180
RSDLRLLLGVMGAPLAPVHVS DPLPHLSIKDTPIE SSAQYILQQYTAASGGQKLQNS
Sbjct: 117 RSDLRLLLGVMGAPLAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNS 176
Query: 181 IRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVH 240
IRNAYAMGKV+M+ASEFETA R +KNRNA++ A+SGGFVLWQMNPDMWYVELAVGGSKVH
Sbjct: 177 IRNAYAMGKVKMIASEFETATRVLKNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVH 236
Query: 241 AGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF 300
AGCNGKLVWRHTPWLGAH+AKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF
Sbjct: 237 AGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF 296
Query: 301 ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWET 360
ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV+MEDSHLTRIQSNGGDAVYWET
Sbjct: 297 ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWET 356
Query: 361 TINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSV 420
TINSFL+DYRPVEGIMIAHSGRS+VTLFRFGE+AMSH+KT+MEE WTIEEVAFNVPGLSV
Sbjct: 357 TINSFLEDYRPVEGIMIAHSGRSIVTLFRFGEMAMSHTKTRMEETWTIEEVAFNVPGLSV 416
Query: 421 DCFIPPADLRSGSISEACELANDERGKSVIALAAHRAKVAALEKSRDSSTDNMIWKTEV 479
DCFIPPADLRSGSISEACEL ++ERGKS ++LAAHRAKVAALEK+ D DN+IW+ EV
Sbjct: 417 DCFIPPADLRSGSISEACELPHEERGKSSVSLAAHRAKVAALEKTHDGGIDNVIWRMEV 475
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555225|ref|XP_002518649.1| conserved hypothetical protein [Ricinus communis] gi|223542030|gb|EEF43574.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|449469112|ref|XP_004152265.1| PREDICTED: uncharacterized protein LOC101209895 [Cucumis sativus] gi|449484316|ref|XP_004156849.1| PREDICTED: uncharacterized LOC101209895 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356536133|ref|XP_003536594.1| PREDICTED: uncharacterized protein LOC100813032 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356575704|ref|XP_003555978.1| PREDICTED: uncharacterized protein LOC100813272 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224056216|ref|XP_002298760.1| predicted protein [Populus trichocarpa] gi|222846018|gb|EEE83565.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255538120|ref|XP_002510125.1| conserved hypothetical protein [Ricinus communis] gi|223550826|gb|EEF52312.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224103701|ref|XP_002313161.1| predicted protein [Populus trichocarpa] gi|222849569|gb|EEE87116.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449482704|ref|XP_004156377.1| PREDICTED: uncharacterized LOC101206617 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449450261|ref|XP_004142882.1| PREDICTED: uncharacterized protein LOC101206617 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| TAIR|locus:2101510 | 485 | AT3G19540 "AT3G19540" [Arabido | 0.981 | 0.969 | 0.702 | 7.8e-181 | |
| TAIR|locus:2007268 | 494 | AT1G49840 "AT1G49840" [Arabido | 0.997 | 0.967 | 0.648 | 1.2e-166 | |
| TAIR|locus:2199191 | 433 | AT1G27690 "AT1G27690" [Arabido | 0.755 | 0.836 | 0.707 | 3.4e-141 | |
| TAIR|locus:2206425 | 417 | AT1G79420 "AT1G79420" [Arabido | 0.678 | 0.779 | 0.534 | 3.4e-93 | |
| TAIR|locus:2166414 | 439 | AT5G05840 "AT5G05840" [Arabido | 0.707 | 0.772 | 0.514 | 1.9e-92 | |
| TAIR|locus:2144128 | 368 | AT5G06610 "AT5G06610" [Arabido | 0.713 | 0.929 | 0.487 | 3e-85 | |
| TAIR|locus:2173634 | 370 | AT5G66740 "AT5G66740" [Arabido | 0.734 | 0.951 | 0.465 | 1.6e-79 | |
| TAIR|locus:2025207 | 395 | AT1G75160 "AT1G75160" [Arabido | 0.630 | 0.764 | 0.470 | 4.1e-72 | |
| TAIR|locus:2078946 | 438 | AT3G55720 "AT3G55720" [Arabido | 0.626 | 0.684 | 0.465 | 6.7e-72 |
| TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
Identities = 347/494 (70%), Positives = 392/494 (79%)
Query: 1 MEKKQGFFSALKQEVVRGLXXXXXXXXXXXXXXXXXXX----LLRRRKNQSSNHHH---- 52
MEKKQGFFSAL+ EVVRGL L RKN +
Sbjct: 1 MEKKQGFFSALRHEVVRGLSPSRSRARSRSVSPARSSSPMSALTWGRKNLTGGGGGGGGG 60
Query: 53 -HQVATQEQLVSRSGSLRPVVGEALAPLMEGPDPD----GAELGESKRVGSGLGNWVKGQ 107
+ +A EQL+ RSGSLRPV MEGPDPD G +GESKR+GSGLG+WVKGQ
Sbjct: 61 GYYLAQPEQLIGRSGSLRPV--------MEGPDPDEGGGGGNIGESKRLGSGLGHWVKGQ 112
Query: 108 LSRTPSVSAMA-YRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQ 166
LSR PSV+A A YRR+DLRLLLGVMGAPLAP+HVS +DPLPHLSIK+TPIE SSAQYILQ
Sbjct: 113 LSRAPSVAATAAYRRNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQ 172
Query: 167 QYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPD 226
QYTAASGGQKLQNSI+NAYAMGK++M+ SE ETA RTV+NRN ++ AE+GGFVLWQMNPD
Sbjct: 173 QYTAASGGQKLQNSIKNAYAMGKLKMITSELETATRTVRNRNPSK-AETGGFVLWQMNPD 231
Query: 227 MWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADA 286
MWYVELAVGGSKV AGCNGKLVWRHTPWLG+HTAKGPVRPLRR LQGLDPRTTA+MFA+A
Sbjct: 232 MWYVELAVGGSKVRAGCNGKLVWRHTPWLGSHTAKGPVRPLRRGLQGLDPRTTAAMFAEA 291
Query: 287 RCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLT 346
+CIGEKK+NGEDCFILKLC DP+TLKARSEGPAEIIRHVLFGYFSQKTGLLV++EDSHLT
Sbjct: 292 KCIGEKKVNGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLT 351
Query: 347 RIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAW 406
RIQSNGG+ V+WETT NS LDDYR VEGIMIAHSG SVVTLFRFGEVA SH++TKMEE+W
Sbjct: 352 RIQSNGGETVFWETTYNSSLDDYRQVEGIMIAHSGHSVVTLFRFGEVATSHTRTKMEESW 411
Query: 407 TIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIXXXXXXXXXXXLEKSR 466
TIEEVAFNVPGLS+DCFIPPADL++GS++E+CE +ERGK+
Sbjct: 412 TIEEVAFNVPGLSLDCFIPPADLKTGSLTESCEYPQEERGKNNTLALSAAHRAKVAALEN 471
Query: 467 DSSTDNM-IWKTEV 479
S D+ +W T+V
Sbjct: 472 GSLEDHRPVWHTDV 485
|
|
| TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00007727001 | SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (470 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| pfam04788 | 243 | pfam04788, DUF620, Protein of unknown function (DU | 1e-157 |
| >gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) | Back alignment and domain information |
|---|
Score = 444 bits (1143), Expect = e-157
Identities = 182/243 (74%), Positives = 209/243 (86%)
Query: 184 AYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGC 243
YAMGKV+M+ASEFE RN+ ESGGFVLWQM PDMWYVEL VGGSKV AG
Sbjct: 1 MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60
Query: 244 NGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILK 303
+GK+VWRHTPWLGAH AKGPVRPLRRALQGLDP+TTAS+FA+A+C+GEK+++GEDCF+LK
Sbjct: 61 DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120
Query: 304 LCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTIN 363
L ADP L ARS+GPAE+IRH LFGYFSQ++GLLV +EDSHLTRIQ+ G DAVYWETTI
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180
Query: 364 SFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCF 423
S L DYR V+G+MIAHSGRSVVTLFRFGE + SHS+T+MEEAWTI++VAFNVPGLS D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240
Query: 424 IPP 426
IPP
Sbjct: 241 IPP 243
|
Family of uncharacterized proteins. Length = 243 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| PF04788 | 245 | DUF620: Protein of unknown function (DUF620); Inte | 100.0 | |
| PF09865 | 214 | DUF2092: Predicted periplasmic protein (DUF2092); | 83.14 |
| >PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-134 Score=960.73 Aligned_cols=243 Identities=73% Similarity=1.252 Sum_probs=239.3
Q ss_pred hhhcceeeeeeeeeccccceeccCCCccccccccEEEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCC
Q 011695 184 AYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGP 263 (479)
Q Consensus 184 myA~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp 263 (479)
|||||||||.++||+++++.++..+.++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||+|||
T Consensus 1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp 80 (245)
T PF04788_consen 1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP 80 (245)
T ss_pred CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence 89999999999999999888877667788999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeece
Q 011695 264 VRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDS 343 (479)
Q Consensus 264 ~RPLRR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lEDS 343 (479)
+|||||+|||||||+||+||++|+|||||+|||||||||||++|+++|++||++++|||||++|||||||||||||||||
T Consensus 81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS 160 (245)
T PF04788_consen 81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS 160 (245)
T ss_pred CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeec--CCCCceEEEeeeeeccccccccCceeeeccCcceEEEEEeccccccccccceeeeeeeeeeeccCCCCCcc
Q 011695 344 HLTRIQS--NGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVD 421 (479)
Q Consensus 344 ~LtRiqs--~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNVpGLS~D 421 (479)
||||||+ +++++|||||||+|.|+|||+||||||||+|+|+||||||||++++|+||||||+|+||||||||||||||
T Consensus 161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D 240 (245)
T PF04788_consen 161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD 240 (245)
T ss_pred eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence 9999999 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 011695 422 CFIPP 426 (479)
Q Consensus 422 cFiPP 426 (479)
|||||
T Consensus 241 cFiPP 245 (245)
T PF04788_consen 241 CFIPP 245 (245)
T ss_pred cccCC
Confidence 99999
|
|
| >PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 8e-06
Identities = 69/539 (12%), Positives = 133/539 (24%), Gaps = 187/539 (34%)
Query: 49 NHHHHQVAT---QEQLVSR-------------------SGSLRPVV-GEALAPLMEGPDP 85
+HHHH + + Q + + ++ E + ++ D
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 86 DGA-----ELGESKR-------VGSGLG---NWVKGQLS---RTPSVSAMAYRRSDLRLL 127
SK+ V L ++ + R PS+ Y RL
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 128 LGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAM 187
A +VS P+L ++ +E A+ +L +
Sbjct: 121 NDN--QVFAKYNVS--RLQPYLKLRQALLELRPAKNVL------------------IDGV 158
Query: 188 ---GKVRMVASEFETAARTVKNRNATRCAESGGFVLW-------------QMNPDMWYVE 231
GK + + K +C + W +M + Y
Sbjct: 159 LGSGKTWVALD----VCLSYK----VQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 232 LAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVR------PLRRALQGLD---PRTTASM 282
S+ N K L H+ + +R P L L +
Sbjct: 210 DPNWTSRSDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 283 FADARC-----------------------------IGEKKINGEDCFILKLCADPQTLKA 313
F + C + + + L PQ L
Sbjct: 262 F-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318
Query: 314 RSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYW--------ETTINSF 365
P E++ + ++ L W T I S
Sbjct: 319 ----PREVLTTNPR-----RLSIIAESIRDGLATWD-------NWKHVNCDKLTTIIESS 362
Query: 366 LDDYRPVEGIMIAHSGRSVVTLFR--FGEVAMSHSKTKMEEA-----WTIEEVAFNVPGL 418
L+ P E +R F +++ + W +V + +
Sbjct: 363 LNVLEPAE--------------YRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMV 406
Query: 419 SVDCFIPPADLRSGSISEACELAN---DERGKSVIALAAHRAKVAALEKSRDSSTDNMI 474
V+ + + + + + + K A HR+ V + +D++I
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| 3buu_A | 229 | Uncharacterized LOLA superfamily protein NE2245; P | 98.28 | |
| 3bk5_A | 237 | Putative outer membrane lipoprotein-sorting prote; | 98.08 | |
| 2yzy_A | 200 | Putative uncharacterized protein TTHA1012; unchara | 90.4 |
| >3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=70.18 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=120.8
Q ss_pred cchHHHHHHHHHHhhCChhhhhhhhhhhhcceeeeeeeeeccccceeccCCCccccccccEEEEeeCCCceEEEEE----
Q 011695 158 ASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELA---- 233 (479)
Q Consensus 158 ~SsAqYIiqQYiAAtGG~k~l~svksmyA~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm~Pd~W~vELv---- 233 (479)
+.+|+-||++..++.++.+ +..+. +.|... . + .+. ...--+.+|.+.+++-++.+.
T Consensus 6 ~~~a~eil~~~~~~~~~~~------~~~~~--~~~~~~--~-~------~~~---~~~~~~~~~~~~~~~~~~~~~~P~~ 65 (229)
T 3buu_A 6 AVTAQSILEKADEIRFPQD------SFQVN--VAIRTA--A-P------DHA---EDLYRYQVLSKGNENSIVMITEPAS 65 (229)
T ss_dssp CCCHHHHHHHHHHHHSCSS------CEEEE--EEEEEE--E-T------TEE---CCCEEEEEEEETTTEEEEEEEESTT
T ss_pred cCCHHHHHHHHHhhccCCC------CeEEE--EEEEEE--c-C------CCc---eEEEEEEEEecCCceEEEEEeCChh
Confidence 3478999999999887632 22333 334321 1 1 110 111226778888887776664
Q ss_pred ecCeeEEeecCCceeeecCCCCCCcCCCCCChh--h----HHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecC
Q 011695 234 VGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRP--L----RRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCAD 307 (479)
Q Consensus 234 VgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RP--L----RR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad 307 (479)
+.|..+.. ||+-+|-..|-+..- -+-++.. + -.-+.++++. =.-+...+|+++|+|.+|++|++.+.
T Consensus 66 ~~g~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~~----~~y~~~l~g~~~v~g~~~~vl~~~pk 138 (229)
T 3buu_A 66 ERGQAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANFT----GDYHPQLLRNESIDDEDYYVLELTGI 138 (229)
T ss_dssp TTTCEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCSB----TTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hcCeEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCcc----ccCceEEeeeeeeCCeeEEEEEEEec
Confidence 56667764 999999999987652 1111111 0 1112222210 12234789999999999999999886
Q ss_pred hhhhhccCCCCceEEEeeeeeccccccceeEEeeceeEEeeecCCCCceEEEeeeeeccccccccCceeeeccCcceEEE
Q 011695 308 PQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTL 387 (479)
Q Consensus 308 ~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lEDS~LtRiqs~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl 387 (479)
... +.=+ + ..=|+++.|+|+++.+- + ..+.--|++-. ..+|..++|+.+++..
T Consensus 139 ~~~---~~y~-----k--~~lwiD~~t~~p~k~~~--~------d~~G~l~k~~~---~~~~~~~~g~~~~~~~------ 191 (229)
T 3buu_A 139 DRS---VTYQ-----K--VLLWVNQSNFRPYKAEF--Y------SVSGRLLKTSR---YENFDNILGEMRPTRI------ 191 (229)
T ss_dssp STT---SSCS-----E--EEEEEETTTCCEEEEEE--E------CTTSCEEEEEE---EEEEEEETTEEEEEEE------
T ss_pred CCC---CceE-----E--EEEEEECCCCcEEEEEE--E------cCCCCEEEEEE---eeccEEECCEEEeEEE------
Confidence 532 1000 0 23488999999999864 2 11222566443 4567777887776542
Q ss_pred EEeccccccccccceeeeeeeeeeeccCCCCCccccCCC
Q 011695 388 FRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPP 426 (479)
Q Consensus 388 ~RfGe~~~~h~~TrMEE~WtIeeV~FNVpGLS~DcFiPP 426 (479)
.+-+...+-..|.|+ +.++.|| +|+-+.|-|.
T Consensus 192 -~~~d~~~~g~~t~~~----~~~~~~~--~l~~~~Ft~~ 223 (229)
T 3buu_A 192 -IMEDALKSGEVSVLD----YSDMKLR--DLPDKIFTKD 223 (229)
T ss_dssp -EEEESSSSCCEEEEE----EEEEEEC--CCCGGGSSTG
T ss_pred -EEEeCcCCCCEEEEE----EeeeEeC--CCChHhCCHH
Confidence 111101111245554 6689998 8988888664
|
| >3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00