Citrus Sinensis ID: 011695


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MEKKQGFFSALKQEVVRGLSPSRSRAASPARSMSPISSLLRRRKNQSSNHHHHQVATQEQLVSRSGSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIALAAHRAKVAALEKSRDSSTDNMIWKTEV
ccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHccccEEEEEEEEEEEEEEEcccccccccccccccccccEEEEEcccccEEEEEEEcccEEEEcccccEEEEcccccccccccccccHHHHHHHccccccccccccccEEEEEEEEccccEEEEEEEcccccHHcccccccEEEEEEEEEccccccccEEEEEccEEEEEEEcccccEEEEEEcccccccccccccEEEEcccccEEEEEEcccccccccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEcc
cccHcHHHHHHHHHHHccccccccccccHcccccHHHHHHHHHccccccccHHccccccccEEccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccEEEEEEEEEEcccccEEEcccccccccccEEEEEccccEEEEEEEEEccEEEEccccEEEEEEccccccccccccccHHHHHHccccHHHHHHHHHccEEEcEEEEccccEEEEEEEccHHHHHHccccccEEEEEEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEEEcHccHHccccccEEEEEccccEEEEEEEEcccccccccEEEEEEEEEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccccEEEEEEEccccccccEEEEEEc
MEKKQGFFSALKQEVVrglspsrsraasparsmspisSLLRrrknqssnhhhhqvATQEQLvsrsgslrpvvgealaplmegpdpdgaelgeskrvgsglgnwvkgqlsrtpsvsamaYRRSDLRLLLGvmgaplapvhvsdndplphlsikdtpieaSSAQYILQQYtaasggqkLQNSIRNAYAMGKVRMVASEFETAARTVknrnatrcaesggfvlwqmnpdMWYVELAVGgskvhagcngklvwrhtpwlgahtakgpvrplrralqgldprttasMFADARCigekkingedcfilklcadpqtlkarsegpAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINsflddyrpvegimiahsgRSVVTLFRFGevamshsktkmEEAWTIEEvafnvpglsvdcfippadlrsgsiSEACELANDERGKSVIALAAHRAKVAALEksrdsstdnmiwktev
mekkqgffsalkqevvrglspsrsraasparsmspisSLLRRRKNQSsnhhhhqvatqeqlvsrsGSLRPVVGEALAPLMEGPDPDGAELGESKRVGsglgnwvkgqlsrtpsvsAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTaasggqklQNSIRNAYAMGKVRMVASEFETAartvknrnatrcAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLgahtakgpvrpLRRALQgldprttaSMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIALAAHRAKvaaleksrdsstdnmiwktev
MEKKQGFFSALKQEVVRGLspsrsraasparsmspissLLRRRKNQSSNHHHHQVATQEQLVSRSGSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIalaahrakvaaLEKSRDSSTDNMIWKTEV
*****************************************************************************************************NWVKG*******VSAMAYRRSDLRLLLGVMGAPLAPVHVS******************SAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACEL*******SVIALAAH************************
***KQGFFSALKQEVV*********************************************************EALAPLMEGPD******************WVK****************SDLRLLLGVMGAPLAPVHVSD****************SSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVA*********************GGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWR****************LRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADP***********EIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADL***********************************S**SSTDNMIWKTEV
MEKKQGFFSALKQEVV*******************ISSL**************************GSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIALAAH*****************MIWKTEV
*****************************************************QVATQEQLVSRSGSLRPVVGEALAPLMEGPDPDGAE*******GS****WV***********AMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRS*****ACE********SVIALAAHRAKVAALEKSRDSSTDNMIWKTEV
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKKQGFFSALKQEVVRGLSPSRSRAASPARSMSPISSLLRRRKNQSSNHHHHQVATQEQLVSRSGSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIALAAHRAKVAALEKSRDSSTDNMIWKTEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
225429331475 PREDICTED: uncharacterized protein LOC10 0.991 1.0 0.855 0.0
255555225481 conserved hypothetical protein [Ricinus 0.997 0.993 0.865 0.0
449469112475 PREDICTED: uncharacterized protein LOC10 0.987 0.995 0.835 0.0
356536133462 PREDICTED: uncharacterized protein LOC10 0.964 1.0 0.820 0.0
356575704463 PREDICTED: uncharacterized protein LOC10 0.966 1.0 0.820 0.0
224056216410 predicted protein [Populus trichocarpa] 0.851 0.995 0.882 0.0
255538120470 conserved hypothetical protein [Ricinus 0.974 0.993 0.763 0.0
224103701443 predicted protein [Populus trichocarpa] 0.920 0.995 0.809 0.0
449482704466 PREDICTED: uncharacterized LOC101206617 0.968 0.995 0.759 0.0
449450261467 PREDICTED: uncharacterized protein LOC10 0.968 0.993 0.757 0.0
>gi|225429331|ref|XP_002271922.1| PREDICTED: uncharacterized protein LOC100257657 [Vitis vinifera] gi|147835619|emb|CAN68554.1| hypothetical protein VITISV_017460 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/479 (85%), Positives = 445/479 (92%), Gaps = 4/479 (0%)

Query: 1   MEKKQGFFSALKQEVVRGLSPSRSRAASPARSMSPISSLLRRRKNQSSNHHHHQVATQEQ 60
           M++KQGFF+ALK+EVVRGLSP+RSRA SP R+ SP+S LLRRRK      H+  VA  E 
Sbjct: 1   MDRKQGFFAALKEEVVRGLSPARSRAKSPGRAGSPMSGLLRRRKQS----HNQYVANPEP 56

Query: 61  LVSRSGSLRPVVGEALAPLMEGPDPDGAELGESKRVGSGLGNWVKGQLSRTPSVSAMAYR 120
           L+SRSGSLRPVVGE L PLMEGPDPDG+E+GESKR G GLG+W+KGQLSRTPSV++ AYR
Sbjct: 57  LISRSGSLRPVVGETLTPLMEGPDPDGSEIGESKRSGLGLGHWMKGQLSRTPSVTSAAYR 116

Query: 121 RSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNS 180
           RSDLRLLLGVMGAPLAPVHVS  DPLPHLSIKDTPIE SSAQYILQQYTAASGGQKLQNS
Sbjct: 117 RSDLRLLLGVMGAPLAPVHVSTTDPLPHLSIKDTPIETSSAQYILQQYTAASGGQKLQNS 176

Query: 181 IRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVH 240
           IRNAYAMGKV+M+ASEFETA R +KNRNA++ A+SGGFVLWQMNPDMWYVELAVGGSKVH
Sbjct: 177 IRNAYAMGKVKMIASEFETATRVLKNRNASKDADSGGFVLWQMNPDMWYVELAVGGSKVH 236

Query: 241 AGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF 300
           AGCNGKLVWRHTPWLGAH+AKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF
Sbjct: 237 AGCNGKLVWRHTPWLGAHSAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCF 296

Query: 301 ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWET 360
           ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV+MEDSHLTRIQSNGGDAVYWET
Sbjct: 297 ILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWET 356

Query: 361 TINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSV 420
           TINSFL+DYRPVEGIMIAHSGRS+VTLFRFGE+AMSH+KT+MEE WTIEEVAFNVPGLSV
Sbjct: 357 TINSFLEDYRPVEGIMIAHSGRSIVTLFRFGEMAMSHTKTRMEETWTIEEVAFNVPGLSV 416

Query: 421 DCFIPPADLRSGSISEACELANDERGKSVIALAAHRAKVAALEKSRDSSTDNMIWKTEV 479
           DCFIPPADLRSGSISEACEL ++ERGKS ++LAAHRAKVAALEK+ D   DN+IW+ EV
Sbjct: 417 DCFIPPADLRSGSISEACELPHEERGKSSVSLAAHRAKVAALEKTHDGGIDNVIWRMEV 475




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555225|ref|XP_002518649.1| conserved hypothetical protein [Ricinus communis] gi|223542030|gb|EEF43574.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449469112|ref|XP_004152265.1| PREDICTED: uncharacterized protein LOC101209895 [Cucumis sativus] gi|449484316|ref|XP_004156849.1| PREDICTED: uncharacterized LOC101209895 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536133|ref|XP_003536594.1| PREDICTED: uncharacterized protein LOC100813032 [Glycine max] Back     alignment and taxonomy information
>gi|356575704|ref|XP_003555978.1| PREDICTED: uncharacterized protein LOC100813272 [Glycine max] Back     alignment and taxonomy information
>gi|224056216|ref|XP_002298760.1| predicted protein [Populus trichocarpa] gi|222846018|gb|EEE83565.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538120|ref|XP_002510125.1| conserved hypothetical protein [Ricinus communis] gi|223550826|gb|EEF52312.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224103701|ref|XP_002313161.1| predicted protein [Populus trichocarpa] gi|222849569|gb|EEE87116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449482704|ref|XP_004156377.1| PREDICTED: uncharacterized LOC101206617 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449450261|ref|XP_004142882.1| PREDICTED: uncharacterized protein LOC101206617 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
TAIR|locus:2101510485 AT3G19540 "AT3G19540" [Arabido 0.981 0.969 0.702 7.8e-181
TAIR|locus:2007268494 AT1G49840 "AT1G49840" [Arabido 0.997 0.967 0.648 1.2e-166
TAIR|locus:2199191433 AT1G27690 "AT1G27690" [Arabido 0.755 0.836 0.707 3.4e-141
TAIR|locus:2206425417 AT1G79420 "AT1G79420" [Arabido 0.678 0.779 0.534 3.4e-93
TAIR|locus:2166414439 AT5G05840 "AT5G05840" [Arabido 0.707 0.772 0.514 1.9e-92
TAIR|locus:2144128368 AT5G06610 "AT5G06610" [Arabido 0.713 0.929 0.487 3e-85
TAIR|locus:2173634370 AT5G66740 "AT5G66740" [Arabido 0.734 0.951 0.465 1.6e-79
TAIR|locus:2025207395 AT1G75160 "AT1G75160" [Arabido 0.630 0.764 0.470 4.1e-72
TAIR|locus:2078946438 AT3G55720 "AT3G55720" [Arabido 0.626 0.684 0.465 6.7e-72
TAIR|locus:2101510 AT3G19540 "AT3G19540" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1755 (622.8 bits), Expect = 7.8e-181, P = 7.8e-181
 Identities = 347/494 (70%), Positives = 392/494 (79%)

Query:     1 MEKKQGFFSALKQEVVRGLXXXXXXXXXXXXXXXXXXX----LLRRRKNQSSNHHH---- 52
             MEKKQGFFSAL+ EVVRGL                       L   RKN +         
Sbjct:     1 MEKKQGFFSALRHEVVRGLSPSRSRARSRSVSPARSSSPMSALTWGRKNLTGGGGGGGGG 60

Query:    53 -HQVATQEQLVSRSGSLRPVVGEALAPLMEGPDPD----GAELGESKRVGSGLGNWVKGQ 107
              + +A  EQL+ RSGSLRPV        MEGPDPD    G  +GESKR+GSGLG+WVKGQ
Sbjct:    61 GYYLAQPEQLIGRSGSLRPV--------MEGPDPDEGGGGGNIGESKRLGSGLGHWVKGQ 112

Query:   108 LSRTPSVSAMA-YRRSDLRLLLGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQ 166
             LSR PSV+A A YRR+DLRLLLGVMGAPLAP+HVS +DPLPHLSIK+TPIE SSAQYILQ
Sbjct:   113 LSRAPSVAATAAYRRNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQ 172

Query:   167 QYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPD 226
             QYTAASGGQKLQNSI+NAYAMGK++M+ SE ETA RTV+NRN ++ AE+GGFVLWQMNPD
Sbjct:   173 QYTAASGGQKLQNSIKNAYAMGKLKMITSELETATRTVRNRNPSK-AETGGFVLWQMNPD 231

Query:   227 MWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADA 286
             MWYVELAVGGSKV AGCNGKLVWRHTPWLG+HTAKGPVRPLRR LQGLDPRTTA+MFA+A
Sbjct:   232 MWYVELAVGGSKVRAGCNGKLVWRHTPWLGSHTAKGPVRPLRRGLQGLDPRTTAAMFAEA 291

Query:   287 RCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLT 346
             +CIGEKK+NGEDCFILKLC DP+TLKARSEGPAEIIRHVLFGYFSQKTGLLV++EDSHLT
Sbjct:   292 KCIGEKKVNGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLT 351

Query:   347 RIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAW 406
             RIQSNGG+ V+WETT NS LDDYR VEGIMIAHSG SVVTLFRFGEVA SH++TKMEE+W
Sbjct:   352 RIQSNGGETVFWETTYNSSLDDYRQVEGIMIAHSGHSVVTLFRFGEVATSHTRTKMEESW 411

Query:   407 TIEEVAFNVPGLSVDCFIPPADLRSGSISEACELANDERGKSVIXXXXXXXXXXXLEKSR 466
             TIEEVAFNVPGLS+DCFIPPADL++GS++E+CE   +ERGK+                  
Sbjct:   412 TIEEVAFNVPGLSLDCFIPPADLKTGSLTESCEYPQEERGKNNTLALSAAHRAKVAALEN 471

Query:   467 DSSTDNM-IWKTEV 479
              S  D+  +W T+V
Sbjct:   472 GSLEDHRPVWHTDV 485




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2007268 AT1G49840 "AT1G49840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199191 AT1G27690 "AT1G27690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206425 AT1G79420 "AT1G79420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166414 AT5G05840 "AT5G05840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144128 AT5G06610 "AT5G06610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173634 AT5G66740 "AT5G66740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025207 AT1G75160 "AT1G75160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078946 AT3G55720 "AT3G55720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00007727001
SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (470 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query479
pfam04788243 pfam04788, DUF620, Protein of unknown function (DU 1e-157
>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620) Back     alignment and domain information
 Score =  444 bits (1143), Expect = e-157
 Identities = 182/243 (74%), Positives = 209/243 (86%)

Query: 184 AYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGC 243
            YAMGKV+M+ASEFE        RN+    ESGGFVLWQM PDMWYVEL VGGSKV AG 
Sbjct: 1   MYAMGKVKMIASEFEIGNGKSVRRNSGGSGESGGFVLWQMKPDMWYVELVVGGSKVSAGS 60

Query: 244 NGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILK 303
           +GK+VWRHTPWLGAH AKGPVRPLRRALQGLDP+TTAS+FA+A+C+GEK+++GEDCF+LK
Sbjct: 61  DGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASLFANAQCVGEKRVDGEDCFVLK 120

Query: 304 LCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTIN 363
           L ADP  L ARS+GPAE+IRH LFGYFSQ++GLLV +EDSHLTRIQ+ G DAVYWETTI 
Sbjct: 121 LDADPAALSARSDGPAEVIRHTLFGYFSQRSGLLVRLEDSHLTRIQTPGADAVYWETTIE 180

Query: 364 SFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCF 423
           S L DYR V+G+MIAHSGRSVVTLFRFGE + SHS+T+MEEAWTI++VAFNVPGLS D F
Sbjct: 181 SSLGDYRAVDGVMIAHSGRSVVTLFRFGEDSGSHSRTRMEEAWTIDDVAFNVPGLSPDSF 240

Query: 424 IPP 426
           IPP
Sbjct: 241 IPP 243


Family of uncharacterized proteins. Length = 243

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 479
PF04788245 DUF620: Protein of unknown function (DUF620); Inte 100.0
PF09865214 DUF2092: Predicted periplasmic protein (DUF2092); 83.14
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins Back     alignment and domain information
Probab=100.00  E-value=1.7e-134  Score=960.73  Aligned_cols=243  Identities=73%  Similarity=1.252  Sum_probs=239.3

Q ss_pred             hhhcceeeeeeeeeccccceeccCCCccccccccEEEEeeCCCceEEEEEecCeeEEeecCCceeeecCCCCCCcCCCCC
Q 011695          184 AYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGP  263 (479)
Q Consensus       184 myA~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm~Pd~W~vELvVgG~KV~AGsDGkvaWRhTPw~gsHAakGp  263 (479)
                      |||||||||.++||+++++.++..+.++.+|+||||||||+|||||+||||||+||+||||||||||||||||+||+|||
T Consensus         1 mya~GkVrM~~se~~~~~~~~~~~~~~~~~e~GgFVlWQ~~Pd~W~~ELvVgG~KV~AGsdGkvaWR~Tpw~g~HAakGp   80 (245)
T PF04788_consen    1 MYAMGKVRMAASEFEGGSGSVTKVGPTGGGEKGGFVLWQMNPDMWYLELVVGGCKVSAGSDGKVAWRHTPWQGSHAAKGP   80 (245)
T ss_pred             CceeeeEEEEEEeeccCCccccccccCcccccccEEEEEeCCCeEEEEEEecceEEeeccCCeeeeecCccccchhhcCC
Confidence            89999999999999999888877667788999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecChhhhhccCCCCceEEEeeeeeccccccceeEEeece
Q 011695          264 VRPLRRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDS  343 (479)
Q Consensus       264 ~RPLRR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lEDS  343 (479)
                      +|||||+|||||||+||+||++|+|||||+|||||||||||++|+++|++||++++|||||++|||||||||||||||||
T Consensus        81 ~RPLRR~lQGLDPr~ta~lF~~A~cvGEk~i~gedCFvLkl~ad~~~l~ars~~~~EiirH~~~GYFSQrtGLLv~lEDS  160 (245)
T PF04788_consen   81 PRPLRRFLQGLDPRSTANLFSNAVCVGEKRINGEDCFVLKLEADPSALKARSSGNAEIIRHTLWGYFSQRTGLLVQLEDS  160 (245)
T ss_pred             CchHHHHHhhcChhhHHHhhhhceEeeeeccCCcccEEEEeeCCHHHHhhhcCCCcEEEEEeeecccccccceeeeeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeec--CCCCceEEEeeeeeccccccccCceeeeccCcceEEEEEeccccccccccceeeeeeeeeeeccCCCCCcc
Q 011695          344 HLTRIQS--NGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVD  421 (479)
Q Consensus       344 ~LtRiqs--~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl~RfGe~~~~h~~TrMEE~WtIeeV~FNVpGLS~D  421 (479)
                      ||||||+  +++++|||||||+|.|+|||+||||||||+|+|+||||||||++++|+||||||+|+||||||||||||||
T Consensus       161 ~L~ri~~~~~~~~~vyWETt~es~i~DYR~Vdgv~IAH~G~t~vtl~RfGe~~~~h~rTrmEE~W~Ieev~FNV~GLS~D  240 (245)
T PF04788_consen  161 HLTRIQSGRPGGDAVYWETTMESSIEDYRAVDGVNIAHSGRTVVTLFRFGENSMSHSRTRMEETWTIEEVDFNVPGLSMD  240 (245)
T ss_pred             eeEEeeecCCCCCceEEEEeecccccccccccceeeeccCCceEEEEecccccccCceeeEeeeeEeeeEEeccCCcchh
Confidence            9999999  78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCC
Q 011695          422 CFIPP  426 (479)
Q Consensus       422 cFiPP  426 (479)
                      |||||
T Consensus       241 cFiPP  245 (245)
T PF04788_consen  241 CFIPP  245 (245)
T ss_pred             cccCC
Confidence            99999



>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query479
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 69/539 (12%), Positives = 133/539 (24%), Gaps = 187/539 (34%)

Query: 49  NHHHHQVAT---QEQLVSR-------------------SGSLRPVV-GEALAPLMEGPDP 85
           +HHHH +     + Q   +                       + ++  E +  ++   D 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 86  DGA-----ELGESKR-------VGSGLG---NWVKGQLS---RTPSVSAMAYRRSDLRLL 127
                       SK+       V   L     ++   +    R PS+    Y     RL 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 128 LGVMGAPLAPVHVSDNDPLPHLSIKDTPIEASSAQYILQQYTAASGGQKLQNSIRNAYAM 187
                   A  +VS     P+L ++   +E   A+ +L                     +
Sbjct: 121 NDN--QVFAKYNVS--RLQPYLKLRQALLELRPAKNVL------------------IDGV 158

Query: 188 ---GKVRMVASEFETAARTVKNRNATRCAESGGFVLW-------------QMNPDMWYVE 231
              GK  +          + K     +C      + W             +M   + Y  
Sbjct: 159 LGSGKTWVALD----VCLSYK----VQCKMDFK-IFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 232 LAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVR------PLRRALQGLD---PRTTASM 282
                S+     N K        L  H+ +  +R      P    L  L         + 
Sbjct: 210 DPNWTSRSDHSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 283 FADARC-----------------------------IGEKKINGEDCFILKLCADPQTLKA 313
           F +  C                             +       +   +  L   PQ L  
Sbjct: 262 F-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318

Query: 314 RSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYW--------ETTINSF 365
               P E++          +  ++       L            W         T I S 
Sbjct: 319 ----PREVLTTNPR-----RLSIIAESIRDGLATWD-------NWKHVNCDKLTTIIESS 362

Query: 366 LDDYRPVEGIMIAHSGRSVVTLFR--FGEVAMSHSKTKMEEA-----WTIEEVAFNVPGL 418
           L+   P E              +R  F  +++      +        W   +V  +   +
Sbjct: 363 LNVLEPAE--------------YRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMV 406

Query: 419 SVDCFIPPADLRSGSISEACELAN---DERGKSVIALAAHRAKVAALEKSRDSSTDNMI 474
            V+     + +          + +   + + K     A HR+ V      +   +D++I
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query479
3buu_A229 Uncharacterized LOLA superfamily protein NE2245; P 98.28
3bk5_A237 Putative outer membrane lipoprotein-sorting prote; 98.08
2yzy_A200 Putative uncharacterized protein TTHA1012; unchara 90.4
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718} Back     alignment and structure
Probab=98.28  E-value=2.3e-05  Score=70.18  Aligned_cols=208  Identities=13%  Similarity=0.127  Sum_probs=120.8

Q ss_pred             cchHHHHHHHHHHhhCChhhhhhhhhhhhcceeeeeeeeeccccceeccCCCccccccccEEEEeeCCCceEEEEE----
Q 011695          158 ASSAQYILQQYTAASGGQKLQNSIRNAYAMGKVRMVASEFETAARTVKNRNATRCAESGGFVLWQMNPDMWYVELA----  233 (479)
Q Consensus       158 ~SsAqYIiqQYiAAtGG~k~l~svksmyA~GkVrM~~sE~~~~~~~v~~~g~~~~~E~GgFVlWQm~Pd~W~vELv----  233 (479)
                      +.+|+-||++..++.++.+      +..+.  +.|...  . +      .+.   ...--+.+|.+.+++-++.+.    
T Consensus         6 ~~~a~eil~~~~~~~~~~~------~~~~~--~~~~~~--~-~------~~~---~~~~~~~~~~~~~~~~~~~~~~P~~   65 (229)
T 3buu_A            6 AVTAQSILEKADEIRFPQD------SFQVN--VAIRTA--A-P------DHA---EDLYRYQVLSKGNENSIVMITEPAS   65 (229)
T ss_dssp             CCCHHHHHHHHHHHHSCSS------CEEEE--EEEEEE--E-T------TEE---CCCEEEEEEEETTTEEEEEEEESTT
T ss_pred             cCCHHHHHHHHHhhccCCC------CeEEE--EEEEEE--c-C------CCc---eEEEEEEEEecCCceEEEEEeCChh
Confidence            3478999999999887632      22333  334321  1 1      110   111226778888887776664    


Q ss_pred             ecCeeEEeecCCceeeecCCCCCCcCCCCCChh--h----HHhhhcCCcccccccccceeeeeeeeecCceeEEEEeecC
Q 011695          234 VGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRP--L----RRALQGLDPRTTASMFADARCIGEKKINGEDCFILKLCAD  307 (479)
Q Consensus       234 VgG~KV~AGsDGkvaWRhTPw~gsHAakGp~RP--L----RR~lQGLDPr~tA~lF~~A~ciGEK~I~GeDCFvLKl~ad  307 (479)
                      +.|..+..  ||+-+|-..|-+..- -+-++..  +    -.-+.++++.    =.-+...+|+++|+|.+|++|++.+.
T Consensus        66 ~~g~~~l~--~~~~~w~y~P~~~~v-~r~~~~~~~~g~~~~~d~~~~~~~----~~y~~~l~g~~~v~g~~~~vl~~~pk  138 (229)
T 3buu_A           66 ERGQAILM--KGRDLWVFMPSVSQP-IRLSLSQRLTGQVANGDIARANFT----GDYHPQLLRNESIDDEDYYVLELTGI  138 (229)
T ss_dssp             TTTCEEEE--ETTEEEEECTTCSSC-EEECTTSEEETTEEHHHHHCCCSB----TTEEEEEEEEEEETTEEEEEEEEEES
T ss_pred             hcCeEEee--cCCceEEECCCCCce-EEccCcccccccccccccccCCcc----ccCceEEeeeeeeCCeeEEEEEEEec
Confidence            56667764  999999999987652 1111111  0    1112222210    12234789999999999999999886


Q ss_pred             hhhhhccCCCCceEEEeeeeeccccccceeEEeeceeEEeeecCCCCceEEEeeeeeccccccccCceeeeccCcceEEE
Q 011695          308 PQTLKARSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTL  387 (479)
Q Consensus       308 ~~~L~arS~g~aEiIrH~~~GYFSQrTGLLV~lEDS~LtRiqs~g~~~vyWETtieS~i~DYR~VdGV~IAH~G~t~vtl  387 (479)
                      ...   +.=+     +  ..=|+++.|+|+++.+-  +      ..+.--|++-.   ..+|..++|+.+++..      
T Consensus       139 ~~~---~~y~-----k--~~lwiD~~t~~p~k~~~--~------d~~G~l~k~~~---~~~~~~~~g~~~~~~~------  191 (229)
T 3buu_A          139 DRS---VTYQ-----K--VLLWVNQSNFRPYKAEF--Y------SVSGRLLKTSR---YENFDNILGEMRPTRI------  191 (229)
T ss_dssp             STT---SSCS-----E--EEEEEETTTCCEEEEEE--E------CTTSCEEEEEE---EEEEEEETTEEEEEEE------
T ss_pred             CCC---CceE-----E--EEEEEECCCCcEEEEEE--E------cCCCCEEEEEE---eeccEEECCEEEeEEE------
Confidence            532   1000     0  23488999999999864  2      11222566443   4567777887776542      


Q ss_pred             EEeccccccccccceeeeeeeeeeeccCCCCCccccCCC
Q 011695          388 FRFGEVAMSHSKTKMEEAWTIEEVAFNVPGLSVDCFIPP  426 (479)
Q Consensus       388 ~RfGe~~~~h~~TrMEE~WtIeeV~FNVpGLS~DcFiPP  426 (479)
                       .+-+...+-..|.|+    +.++.||  +|+-+.|-|.
T Consensus       192 -~~~d~~~~g~~t~~~----~~~~~~~--~l~~~~Ft~~  223 (229)
T 3buu_A          192 -IMEDALKSGEVSVLD----YSDMKLR--DLPDKIFTKD  223 (229)
T ss_dssp             -EEEESSSSCCEEEEE----EEEEEEC--CCCGGGSSTG
T ss_pred             -EEEeCcCCCCEEEEE----EeeeEeC--CCChHhCCHH
Confidence             111101111245554    6689998  8988888664



>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633} Back     alignment and structure
>2yzy_A Putative uncharacterized protein TTHA1012; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.60A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00