Citrus Sinensis ID: 011700

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEccccEEEEEccccEEEcccccEEcccEEEEcccccccccccccccccccccEEEEccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEcccEEEEEEEcccccEEEEEcccccEEEccEEEEccccccccHHHHHccccccccEEEccccccccccEEEccccccccccccccccEEccHHHHHHHHHHHHHHHcccccccccccccEEEEccccccEEEEccccccEEEEccccccEEEEEEEEccEEEEEEEccccHHHHHHHHHHHccccccccHHHHHcccccHHHHHccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccHHHHHHHHHHHHHccccccEEEEEccccccccccccccHHHHccccccccccEEEEEccccccccHHHHHHcccEEEEccEEEEEcccccEEEEccccEEEccEEEEEccccccccccccccccccccEEEEEcHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHccccEEEEEccccHHHHHccHHHHHHHHHHHHHcccEEEEccEEEEEEEccccEEEEEEEccccEEcccEEEEcccEEEccHHHcccccEEccEEcccccccccccEcccccEEEcccccccccEEEccccHHHHHHHHHHHHHHHccccccccccccEEEEEcccEEEEEEccccccEEEEEccccccEEEEEEEccEEEEEEEccccHHHHHHHHHHHHccccHHHHHHHHHccccccccHccccccccHHccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MGRAFVYVIVGGGVAAGYAALeftkrgvppgelciiseepvapyerpalskgyllpeaparlpsfhtcvganeerltpkwynehgielvlgtrvksadVRRKTLVTATGETISYKILIIATGARALKLEefglsgsdaenvcyLRDLADANRLVNVMKScsggnavvigGGYIGMECAASLVINKInvtmvfpeahcmarlfTPKIASYYEEYYKskgvkfvkgtvlssfdvdsngkvVAVNlrdgnrlptdmvvvgigirpntslfegQLTLEKggikvtgrlqssnssvyavgdvaafplkllgetrrlEHVDSARKSAKHAVAAImepdktdkfdylpffysRVFTLSWQFYGDNVGEVVhygnfsgttfGAYWVNKGRlvgsfleggtKEEYEAIAKATRLQPVVEDLAELETQGLGFALAvsqkplpstpvdgktvpglvlgkslyplhaTAGVILAASIAAFAYWYGRRRRRW
Flexible Loop (DISEMBL)
MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANeerltpkwyneHGIELvlgtrvksadvrRKTLvtatgetisykiLIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVlssfdvdsngkvvavnlrdgnrlptDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGrlqssnssvyavGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAimepdktdkfdYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVsqkplpstpvdGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Low Complexity Region (SEG)
MGRAFvyvivgggvaagyaaLEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered region (IsUnstruct)
***AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH**********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQK*****PVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGR*****
Disordered Region (DISOPRED)
***AFVY*IVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQP******ELETQGL************************VLGKSLYPLHATAGVILAASIAAFAYWYGRRRRR*
Disordered Region (DISEMBL)
MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE***********AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Disordered Region (DISPRO)
***AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q9LK94	488	Probable monodehydroascor	yes	no	1.0	0.981	0.772	0.0
Q43497	433	Monodehydroascorbate redu	N/A	no	0.876	0.969	0.558	1e-137
Q40977	433	Monodehydroascorbate redu	N/A	no	0.883	0.976	0.541	1e-135
Q9LFA3	434	Probable monodehydroascor	no	no	0.885	0.976	0.545	1e-130
Q42711	434	Monodehydroascorbate redu	N/A	no	0.881	0.972	0.564	1e-126
Q93WJ8	435	Probable monodehydroascor	no	no	0.885	0.974	0.542	1e-123
Q9SR59	441	Probable monodehydroascor	no	no	0.839	0.911	0.497	1e-112
P92947	493	Monodehydroascorbate redu	no	no	0.876	0.851	0.454	2e-97
P16640	422	Putidaredoxin reductase O	yes	no	0.757	0.860	0.296	5e-38
P83966	166	Monodehydroascorbate redu	N/A	no	0.296	0.855	0.459	7e-34

>sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/488 (77%), Positives = 425/488 (87%), Gaps = 9/488 (1%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFT+RGV  GELCIISEEPVAPYERPALSKG+LLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGAN+E+LTPKWY +HGIELVLGTRVKS DVRRKTL+++TGETISYK LIIA
Sbjct: 61  RLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV A
Sbjct: 181 LVINKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNL+DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA F
Sbjct: 241 VNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G
Sbjct: 301 PVKLFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTG 360

Query: 361 EVVHYGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQ 418
           +VVH+G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +
Sbjct: 361 DVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELERE 420

Query: 419 GLGFA-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYW 471
           GLGFA   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+W
Sbjct: 421 GLGFAHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFW 480

Query: 472 YGRRRRRW 479
           YGRRRRRW
Sbjct: 481 YGRRRRRW 488

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4

>sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/428 (55%), Positives = 305/428 (71%), Gaps = 8/428 (1%)

Query: 3   RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARL 62
           ++F YVIVGGGV+AGYAA EF K+GV PGEL IIS+E VAPYERPALSK YL PE  ARL
Sbjct: 4   KSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGAARL 63

Query: 63  PSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
           P FH CVG+  ER  P+WY E GI L+L T +  AD+  KTLV+A GE+  Y+ L+IATG
Sbjct: 64  PGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVIATG 123

Query: 123 ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV 182
              LKL +FG+ G+D++N+ YLR++ DA++LV  +K+   G AVV+GGGYIG+E +A L 
Sbjct: 124 TTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVLR 183

Query: 183 INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242
           +N I V MV+PE  CM RLFT  IA++YE YYK+KGV  +KGTV   FD   NG+V  V 
Sbjct: 184 LNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEVK 243

Query: 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
           L+DG  L  D+VVVG+G RP T+LF+GQ+  EKGGIK     ++S   VYAVGDVA FPL
Sbjct: 244 LKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPL 303

Query: 303 KLLGETRRLEHVDSARKSAKHAVAAIMEPDK---TDKFDYLPFFYSRVFTLSWQFYGDNV 359
           K+  E RR+EHVD +RKSA+ AV AI   ++    D++DYLP+FYSR F LSWQFYGDNV
Sbjct: 304 KMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYGDNV 363

Query: 360 GEVVHYG----NFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 415
           GE V +G    N +   FG YW+  G++VG+FLE G+ EE +AIAK  ++QP    L +L
Sbjct: 364 GETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TLDQL 422

Query: 416 ETQGLGFA 423
             +G+ FA
Sbjct: 423 AQEGISFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/430 (54%), Positives = 308/430 (71%), Gaps = 7/430 (1%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           M  +F Y+I+GGGV+AGYAA EF K+GV PGEL IIS+E VAPYERPALSK YL PE+PA
Sbjct: 1   MVHSFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLP FHTCVG+  ERL P+WY+E GI+L L T + SAD+  K L +A GE   Y+ L+IA
Sbjct: 61  RLPGFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TG+  ++L +FG+ G++A+N+ YLR++ DA++L   +K       VV+GGGYIG+E +A 
Sbjct: 121 TGSAVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAV 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           L +N ++VTMV+PE  CM RLFT +IA++YE YY +KG+  +KGTV   F  +S+G+V  
Sbjct: 181 LKLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKE 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           V L+DG  L  D+V+VG+G RP  SLF+GQ+  + GGIK     ++S   VYAVGDVA F
Sbjct: 241 VKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGD 357
           PLKL  + RR+EHVD ARKSA+ A  AI   D     +++DYLP+FYSR F LSWQFYGD
Sbjct: 301 PLKLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGD 360

Query: 358 NVGEVVHYGN----FSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLA 413
           NVGE V +G+     S   FG YW+ +G++VG+FLEGGT +E +AIAK  R +P VED+ 
Sbjct: 361 NVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVN 420

Query: 414 ELETQGLGFA 423
           +L  +GL FA
Sbjct: 421 QLAEEGLSFA 430

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/431 (54%), Positives = 314/431 (72%), Gaps = 7/431 (1%)

Query: 3   RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARL 62
           ++F Y+I+GGGV+AGYAA EF  +GV PGEL +IS+E VAPYERPALSKGYL PE  ARL
Sbjct: 4   KSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARL 63

Query: 63  PSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
           P FH CVG+  E+L P+ Y + GIEL+L T +  AD+  K+LV+ATG+   Y+ LIIATG
Sbjct: 64  PGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATG 123

Query: 123 ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV 182
           +  L+L +FG+ G+D++N+ YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L 
Sbjct: 124 STVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLR 183

Query: 183 INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242
           IN ++VTMVFPE  CM RLFT  IA++YE YY +KGVK +KGTV S F    NG+V  V 
Sbjct: 184 INNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQ 243

Query: 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
           L+DG  L  D+V+VG+G +P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPL
Sbjct: 244 LKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPL 303

Query: 303 KLLGETRRLEHVDSARKSAKHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNV 359
           K+ G+ RR+EHVD +RKSA+ AV AI   +     +++DYLPFFYSR F LSWQFYGDNV
Sbjct: 304 KMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNV 363

Query: 360 GEVVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 415
           G+ V +G+ + +     FGAYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL
Sbjct: 364 GDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDEL 423

Query: 416 ETQGLGFALAV 426
             QG+ FA  +
Sbjct: 424 VKQGISFAAKI 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1

 Score =  451 bits (1159), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/429 (56%), Positives = 309/429 (72%), Gaps = 7/429 (1%)

Query: 5   FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPS 64
           F YVI+GGGVAAGYAA EF K+G+ PGEL IIS+E VAPYERPALSK YL PE+PARLP 
Sbjct: 6   FKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESPARLPG 65

Query: 65  FHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR 124
           FH CVG+  ERL P WY E GIEL+L T +  AD+  K L +A G+  +Y+ LIIATG+ 
Sbjct: 66  FHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLIIATGST 125

Query: 125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 184
            +KL +FG+ G+DA+N+ YLR++ DA++LV  +K+   G  VV+GGGYIG+E  A+L IN
Sbjct: 126 VIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAALRIN 185

Query: 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244
             +V+MV+PE  CM RLFTP+IA++YE YY  KG+  +KGTV   F VD+NG+V  V L+
Sbjct: 186 NFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKEVKLK 245

Query: 245 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           DG  L  D+VVVG+G RP TSLF+GQ+  EKGGIK     ++S   VYAVGDVA FPLKL
Sbjct: 246 DGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKL 305

Query: 305 LGETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361
             E RR+EHVD +RKSA+ AV AI    E    +++DYLP+FYSR F LSWQFYGDNVG+
Sbjct: 306 YNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYGDNVGD 365

Query: 362 VVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 417
            V +G+ S  +    FG+YW+  G++VG+FLE G+ EE +AIAK  R+QP VE    L  
Sbjct: 366 AVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDLLLK 425

Query: 418 QGLGFALAV 426
           +G+ FA  V
Sbjct: 426 EGISFASKV 434

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/431 (54%), Positives = 300/431 (69%), Gaps = 7/431 (1%)

Query: 3   RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARL 62
           ++F YVIVGGGVAAGYAA EF  +GV PGEL IIS E V PYERPALSKGY+  E  A L
Sbjct: 5   KSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKATL 64

Query: 63  PSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
           P+F+   G   ER  P+WY E GIEL+LGT +  AD+  KTLV+ TG+   Y+ L+ ATG
Sbjct: 65  PNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATG 124

Query: 123 ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV 182
           +  ++L +FG+ G+DA+N+ YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L 
Sbjct: 125 SSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALK 184

Query: 183 INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242
            N ++VTMV+PE  CM RLFT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V 
Sbjct: 185 ANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVK 244

Query: 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
           L+DG  L  D+V+VG+G RP  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+
Sbjct: 245 LKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPM 304

Query: 303 KLLGETRRLEHVDSARKSAKHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNV 359
           KL  E RR+EHVD ARKSA+ AV AI    E +   ++DYLP+FYSR F LSWQFYGDNV
Sbjct: 305 KLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNV 364

Query: 360 GEVVHYGNFSGTT----FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 415
           GE V +G+    +    FG+YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L
Sbjct: 365 GESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVL 424

Query: 416 ETQGLGFALAV 426
             +GL FA  +
Sbjct: 425 SKEGLSFATNI 435

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/410 (49%), Positives = 276/410 (67%), Gaps = 8/410 (1%)

Query: 22  EFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81
           EF+ +G+ PGEL IIS+EPV P+ERP L+K Y+  E    L + + C G  E +  P WY
Sbjct: 24  EFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPTLANIYVCAGTGEAKQYPNWY 83

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENV 141
            E GI+L++GT +  AD+  KTLV+  G+   Y+ L+IATG+  ++L E G+  +D +N+
Sbjct: 84  KEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSEIGVQEADVKNI 143

Query: 142 CYLRDLADANRLVNVMK-SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200
            YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N   VTMVFPE   + R
Sbjct: 144 FYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHR 203

Query: 201 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260
            FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L DG  L  ++VV G+G 
Sbjct: 204 FFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGA 263

Query: 261 RPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS 320
           RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+ G TRR+EH D+ARKS
Sbjct: 264 RPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKS 323

Query: 321 AKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTT----F 373
           A  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE V +G+    +    F
Sbjct: 324 AAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGESVLFGDNDPKSPKPKF 383

Query: 374 GAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA 423
           G YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  +GL FA
Sbjct: 384 GTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSEEGLSFA 433

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3

 Score =  356 bits (913), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/438 (45%), Positives = 269/438 (61%), Gaps = 18/438 (4%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLP--EAPARLPS 64
           +VIVGGG AAGYAA  F + G+  G LCI+++E  APYERPAL+K YL P  + PARLP 
Sbjct: 63  FVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPG 122

Query: 65  FHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR 124
           FHTCVG   ER TP WY E GIE++    V  AD  ++TL T  G+ + Y  LIIATG  
Sbjct: 123 FHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCT 182

Query: 125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 184
           A +  +    G     V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V  
Sbjct: 183 ASRFPD--KIGGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAW 238

Query: 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244
            ++ T+VFPE   + RLFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L 
Sbjct: 239 NLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLA 298

Query: 245 DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPL 302
           DG+ +  D VV+GIG +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPL
Sbjct: 299 DGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPL 357

Query: 303 KLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFY 355
           K+     R+EHVD AR+SA+H V +++    TD +DYLP+FYSRVF          WQF+
Sbjct: 358 KIYDRMTRVEHVDHARRSAQHCVKSLLTA-HTDTYDYLPYFYSRVFEYEGSPRKVWWQFF 416

Query: 356 GDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL 415
           GDNVGE V  GNF       +W+  GRL G  +E G+ EE++ + K  R QP+V+     
Sbjct: 417 GDNVGETVEVGNFD-PKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLA 475

Query: 416 ETQGLGFALAVSQKPLPS 433
               +  AL ++Q  L S
Sbjct: 476 SASSVEEALEIAQAALQS 493

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

>sp|P16640|CAMA_PSEPU Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 188/381 (49%), Gaps = 18/381 (4%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VIVG G+A    A      G   G + ++ +  V P+  P LSK YL  +A A      T
Sbjct: 8   VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                     P  Y    I+L+ GT+V + +  R+ ++ + G  + Y  L++ATG R   
Sbjct: 67  ----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRP 116

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L     +   A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   ++
Sbjct: 117 LPVASGAVGKANNFRYLRTLEDAECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMH 174

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDG 246
           VT++   A  + R+  P ++++YE  ++  GV    GT +  F++ ++  KV AV   DG
Sbjct: 175 VTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG 234

Query: 247 NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
            RLP D+V+ GIG+ PN  L          GI +   +Q+S+  + AVGD A F  +L  
Sbjct: 235 TRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYD 294

Query: 307 ETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVH 364
              R+E V +A + A+  +AAI+   K  + +  P+F+S  + +  +  G + G   ++ 
Sbjct: 295 RWVRIESVPNALEQARK-IAAIL-CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIV 352

Query: 365 YGNFSGTTFGAYWVNKGRLVG 385
            G+ +   F  +++   R++ 
Sbjct: 353 RGSLAQPDFSVFYLQGDRVLA 373

The oxidation of camphor by cytochrome P450-CAM requires the participation of a flavoprotein, putidaredoxin reductase, and an iron-sulfur protein, putidaredoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation.

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1

 Score =  145 bits (366), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 107/183 (58%), Gaps = 41/183 (22%)

Query: 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVY 292
           D++  V A+ L+DG  L  D+VVVG+G RP  SLF                 ++S   VY
Sbjct: 23  DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLF-----------------KTSIPDVY 65

Query: 293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSW 352
           AVGDVA +PLKL  E RR+EHVD AR S              +++DYLP+FYSR F L+W
Sbjct: 66  AVGDVATYPLKLYNELRRVEHVDHARLS-------------IEEYDYLPYFYSRTFNLAW 112

Query: 353 QFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 412
           QFYGDNVGE V + +     FG YW+   ++VG FLEGGT +EY    K  R+QP VE L
Sbjct: 113 QFYGDNVGETVLFPD----NFGTYWI---KVVGVFLEGGTPDEY----KVARVQPPVESL 161

Query: 413 AEL 415
            +L
Sbjct: 162 DQL 164

Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
225452428	478	PREDICTED: probable monodehydroascorbate	0.997	1.0	0.862	0.0
224055551	478	predicted protein [Populus trichocarpa]	0.997	1.0	0.835	0.0
449483761	480	PREDICTED: probable monodehydroascorbate	0.997	0.995	0.837	0.0
449450093	480	PREDICTED: probable monodehydroascorbate	0.997	0.995	0.835	0.0
255560882	478	monodehydroascorbate reductase, putative	0.970	0.972	0.836	0.0
356571330	478	PREDICTED: probable monodehydroascorbate	0.997	1.0	0.818	0.0
356558865	478	PREDICTED: probable monodehydroascorbate	0.997	1.0	0.824	0.0
15232273	488	monodehydroascorbate reductase (NADH) [A	1.0	0.981	0.772	0.0
297815040	488	ATMDAR4 [Arabidopsis lyrata subsp. lyrat	1.0	0.981	0.768	0.0
242062770	476	hypothetical protein SORBIDRAFT_04g03044	0.985	0.991	0.720	0.0

>gi|225452428|ref|XP_002277200.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Vitis vinifera] gi|147795418|emb|CAN77104.1| hypothetical protein VITISV_018446 [Vitis vinifera] gi|296087650|emb|CBI34906.3| unnamed protein product [Vitis vinifera]

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/479 (86%), Positives = 445/479 (92%), Gaps = 1/479 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRA  YVI+GGGVAAGYAALEFTKRG+  GELCIISEEPV PYERPALSKG+LLPEAP+
Sbjct: 1   MGRAITYVILGGGVAAGYAALEFTKRGISHGELCIISEEPVVPYERPALSKGFLLPEAPS 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGANEERLTPKWY EHGIELVLGTRVKSADVRRKTL+TATGETISYKILIIA
Sbjct: 61  RLPSFHTCVGANEERLTPKWYKEHGIELVLGTRVKSADVRRKTLLTATGETISYKILIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARAL+LEEFG++GSDAENVCYLRDLADA RLV+VMKSC+GGNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALQLEEFGVAGSDAENVCYLRDLADATRLVDVMKSCTGGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPEAHCMARLFTPKIASYYE+YYKSKGVKF+KGT LSSFD+D +GKV A
Sbjct: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEDYYKSKGVKFIKGTALSSFDIDDSGKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           V LRDGNRLP DMVVVGIGIRPNT LFEGQLTLEKGGIKV G +QSSNSSVYAVGDVAAF
Sbjct: 241 VTLRDGNRLPADMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGWMQSSNSSVYAVGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GETRRLEHVDSARKSA+HAV AIMEP KT +FDYLPFFYSRVFTLSWQFYGD+VG
Sbjct: 301 PVKLFGETRRLEHVDSARKSARHAVTAIMEPAKTSEFDYLPFFYSRVFTLSWQFYGDSVG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVVHYG+FSG+TFGAYWV+KG+LVGSFLEGGTKEEYEAIAKAT+L+P VEDLAELE QGL
Sbjct: 361 EVVHYGDFSGSTFGAYWVSKGQLVGSFLEGGTKEEYEAIAKATKLKPDVEDLAELERQGL 420

Query: 421 GFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 479
           GFALAVS+KP PS P +  +  GL L K +Y  HATAGVI+AAS+A FAYWYGR+RRRW
Sbjct: 421 GFALAVSRKPPPSQPPEVSS-SGLNLQKPMYAWHATAGVIVAASVAVFAYWYGRKRRRW 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055551|ref|XP_002298535.1| predicted protein [Populus trichocarpa] gi|222845793|gb|EEE83340.1| predicted protein [Populus trichocarpa]

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/479 (83%), Positives = 438/479 (91%), Gaps = 1/479 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFTK+GV PGELCIISEE V PYERPALSKGYLLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTKKGVSPGELCIISEETVPPYERPALSKGYLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGANEERLTPKWY EHGIEL+LGTRVKS DVRRKTL+TA GETISYKILIIA
Sbjct: 61  RLPSFHTCVGANEERLTPKWYKEHGIELILGTRVKSVDVRRKTLLTAVGETISYKILIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG+SGSDAENVCYLRDLADANR+V+VM+SC+ GNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVSGSDAENVCYLRDLADANRVVDVMQSCASGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LV N+INVTMVFPE HCMARLFTPKIASYYE YY SKGV+FVKGTVLSSF++D  GKV A
Sbjct: 181 LVTNRINVTMVFPEVHCMARLFTPKIASYYEGYYNSKGVRFVKGTVLSSFEIDPIGKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDG++LP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+SN+SVYAVGDVAAF
Sbjct: 241 VNLRDGSQLPADMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSNTSVYAVGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GETRRLEHVDSARK+AKHAVAAIMEP+KTD+FDYLPFFYSR FT SWQFYGDN G
Sbjct: 301 PVKLFGETRRLEHVDSARKTAKHAVAAIMEPEKTDEFDYLPFFYSRFFTFSWQFYGDNAG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVVH+G++SG T GAYW++KG LVGSFLEGGTKEEYEA+AK TRL+P ++D+ ELE QGL
Sbjct: 361 EVVHFGDYSGNTIGAYWISKGHLVGSFLEGGTKEEYEALAKTTRLKPAIDDITELERQGL 420

Query: 421 GFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 479
           GFA+ VS+KPL S P D  +   LVL + L+  HATAGVI AASIAAFAYWYG+RRRRW
Sbjct: 421 GFAVTVSKKPLTSPPAD-VSDSTLVLERPLFAWHATAGVITAASIAAFAYWYGKRRRRW 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483761|ref|XP_004156683.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  793 bits (2049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/481 (83%), Positives = 439/481 (91%), Gaps = 3/481 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFTKRGV  GELCIISEE VAPYERPALSKGYLLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTKRGVSRGELCIISEETVAPYERPALSKGYLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLP+FHTCVGANEERLTPKWY EHGIELVLGTRV SADVRR+TL+TA GETISYKILI+A
Sbjct: 61  RLPAFHTCVGANEERLTPKWYKEHGIELVLGTRVISADVRRRTLLTAAGETISYKILIVA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVA
Sbjct: 181 LVINKINVTMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAF
Sbjct: 241 VNLRDGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+K+  ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+G
Sbjct: 301 PVKIFSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVV++G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL
Sbjct: 361 EVVYFGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGL 420

Query: 421 GFALAVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRR 478
            +A+A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRR
Sbjct: 421 SYAMAISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRR 479

Query: 479 W 479
           W
Sbjct: 480 W 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450093|ref|XP_004142798.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Cucumis sativus]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/481 (83%), Positives = 438/481 (91%), Gaps = 3/481 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFTKRGV  GELCIISEE VAPYERPALSKGYLLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTKRGVSRGELCIISEETVAPYERPALSKGYLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLP+FHTCVGANEERLTPKWY EHGIELVLGTRV SADVRR+TL+TA GETISYKILI+A
Sbjct: 61  RLPAFHTCVGANEERLTPKWYKEHGIELVLGTRVISADVRRRTLLTAAGETISYKILIVA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG++GSDAENVCYLRDL DANR V+VM SCSGGNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVNGSDAENVCYLRDLNDANRAVDVMHSCSGGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINV MVFPEA CM RLFTPKIAS+YE+YYKSKGV+FVKGTVLSSFD+DSNGKVVA
Sbjct: 181 LVINKINVAMVFPEAQCMPRLFTPKIASFYEDYYKSKGVEFVKGTVLSSFDMDSNGKVVA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDG RLP DMVVVGIGIRPNTSLFEGQLTLEKGGIKV G++QSSNSSVYAVGDVAAF
Sbjct: 241 VNLRDGKRLPVDMVVVGIGIRPNTSLFEGQLTLEKGGIKVNGKMQSSNSSVYAVGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+K+  ETRRLEHVDSARK A+HAVAAIMEP+KT  FDY+PFFYSR+F LSWQFYGDN+G
Sbjct: 301 PVKIFSETRRLEHVDSARKCARHAVAAIMEPEKTGDFDYVPFFYSRIFALSWQFYGDNIG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVV++G+FSG TFGAYWVNKG LVGSFLEGGTKEEY AIA  T L+P +EDLAELE++GL
Sbjct: 361 EVVYFGDFSGNTFGAYWVNKGHLVGSFLEGGTKEEYAAIAMVTSLKPAIEDLAELESRGL 420

Query: 421 GFALAVSQKPLPS--TPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRR 478
            +A+A+S++P P   T VD  + P LV+ K +Y  HATAGVILA SIAAFAYWYGRRRRR
Sbjct: 421 SYAMAISREPPPPQVTNVD-VSGPSLVIEKPMYRWHATAGVILAGSIAAFAYWYGRRRRR 479

Query: 479 W 479
           W
Sbjct: 480 W 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560882|ref|XP_002521454.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223539353|gb|EEF40944.1| monodehydroascorbate reductase, putative [Ricinus communis]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/470 (83%), Positives = 435/470 (92%), Gaps = 5/470 (1%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFT++GV PGELCIISEEPV PYERPALSKGYLLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTRKGVSPGELCIISEEPVPPYERPALSKGYLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGANEERLTPKWY EHGIELVLGTRVKSADVRRKTL+TA GETISYKILIIA
Sbjct: 61  RLPSFHTCVGANEERLTPKWYKEHGIELVLGTRVKSADVRRKTLLTAAGETISYKILIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG++GS+AENVCYLRD+ADA+RLVNVM+SC+GGNAV+IGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVNGSNAENVCYLRDVADADRLVNVMQSCTGGNAVIIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           L INK+NVTMVFPEAHCMARLFTPKIASYYE+YYK KGV+F+KGTVLSS D+DSNGKV A
Sbjct: 181 LAINKMNVTMVFPEAHCMARLFTPKIASYYEDYYKCKGVQFIKGTVLSSLDMDSNGKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDGNRLP D+VVVGIGIRPNTSLFEGQLTLEKGGIKV GR+Q+S +SVYAVGDVA+F
Sbjct: 241 VNLRDGNRLPADIVVVGIGIRPNTSLFEGQLTLEKGGIKVNGRMQTSITSVYAVGDVASF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GETRRLEHVDSARKSA++AVAAIMEP+KT  FDYLPFFYSRVF LSWQFYGDN G
Sbjct: 301 PVKLFGETRRLEHVDSARKSARYAVAAIMEPNKTVDFDYLPFFYSRVFALSWQFYGDNAG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVVH+G++SG+T GAYWV+KG LVGSFLEGGTKEEYEAIAKATRL+P +ED ++LE QGL
Sbjct: 361 EVVHFGDYSGSTIGAYWVSKGHLVGSFLEGGTKEEYEAIAKATRLKPAIEDTSDLERQGL 420

Query: 421 GFALAVSQKPLPSTPVD--GKTVPGLVLGKSLYPLHATAGVILAASIAAF 468
           GFALAVS+ P+ S P D  G +   L+L + LY  HATAGV+LAAS+AAF
Sbjct: 421 GFALAVSENPVTSPPGDVGGSS---LILERPLYAWHATAGVVLAASVAAF 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571330|ref|XP_003553831.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Glycine max]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/479 (81%), Positives = 434/479 (90%), Gaps = 1/479 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEF K+GV  GELCIIS+EPVAPYERPALSKG+LLPEA A
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFVKKGVSHGELCIISDEPVAPYERPALSKGFLLPEAAA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGANEERLT KWY EHGIELVLGT VKSADV+RKTL+T TGETISYKILI+A
Sbjct: 61  RLPSFHTCVGANEERLTSKWYKEHGIELVLGTGVKSADVKRKTLLTTTGETISYKILIVA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG++GSDA NVCYLRD+ADANRLV+VM+SC GGNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVTGSDAGNVCYLRDIADANRLVDVMQSCPGGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPE HCM RLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV A
Sbjct: 181 LVINKINVTMVFPEEHCMGRLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDG+ L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAF
Sbjct: 241 VNLRDGSTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+K +GETRRLEHVDSARKSA+H V+AIMEP+KT +FDYLPFFYSR+FTLSWQFYGDNVG
Sbjct: 301 PVKAVGETRRLEHVDSARKSARHVVSAIMEPNKTREFDYLPFFYSRIFTLSWQFYGDNVG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVV+YG+ SG+TFGAYWV+K  LVG+FLEGGTKEEYEAIAKATRL+PV+EDL ELE QGL
Sbjct: 361 EVVYYGDMSGSTFGAYWVSKDHLVGAFLEGGTKEEYEAIAKATRLRPVIEDLTELERQGL 420

Query: 421 GFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 479
            FA+ VS+KP+ S P++ +    L+L K LY  HATAGVI+AASIA FAY+YG++R RW
Sbjct: 421 RFAVTVSEKPMASPPIEVRA-SDLLLEKPLYAWHATAGVIIAASIAGFAYFYGKKRHRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558865|ref|XP_003547723.1| PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2-like [Glycine max]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/479 (82%), Positives = 432/479 (90%), Gaps = 1/479 (0%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEF K+GV  GELCIIS+EPVAPYERPALSKG+LLPEA A
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFVKKGVSHGELCIISDEPVAPYERPALSKGFLLPEAAA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGANEERLTPKWY EHGIELVLGT VKS DV+RKTL+T TGETISYKILI+A
Sbjct: 61  RLPSFHTCVGANEERLTPKWYKEHGIELVLGTGVKSTDVKRKTLLTTTGETISYKILIVA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG+SGSDAENVCYLR +ADANRLV+VM+SC GGNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVSGSDAENVCYLRHIADANRLVDVMQSCPGGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPE HCMARLFT KIA+YYEEYYKS+GV F+KGTVLSSFD DSNGKV A
Sbjct: 181 LVINKINVTMVFPEEHCMARLFTSKIANYYEEYYKSRGVNFIKGTVLSSFDFDSNGKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNLRDG  L  DMVVVGIGIRPNT LFEGQLTLEKGGIKV G LQSSNSSVYA+GDVAAF
Sbjct: 241 VNLRDGTTLSVDMVVVGIGIRPNTGLFEGQLTLEKGGIKVNGMLQSSNSSVYAIGDVAAF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+K  GETRRLEHVDSARKSA H V++IMEP+KT +FDY+PFFYSRVFTLSWQFYGDNVG
Sbjct: 301 PVKAFGETRRLEHVDSARKSAIHVVSSIMEPNKTGEFDYIPFFYSRVFTLSWQFYGDNVG 360

Query: 361 EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL 420
           EVV+YG+ SG+ FGAYWV+KG LVG+FLEGGTKEEYEAIAKATRL+P +EDL ELE QGL
Sbjct: 361 EVVYYGDMSGSAFGAYWVSKGHLVGAFLEGGTKEEYEAIAKATRLRPAIEDLTELERQGL 420

Query: 421 GFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRRRRW 479
            FA+ VSQKP+   PV+ +    L+L K LY  HATAGVI+AASIAAFAY+YG++RRRW
Sbjct: 421 SFAVTVSQKPVVPPPVEVRA-SDLLLEKPLYAWHATAGVIIAASIAAFAYFYGKKRRRW 478

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232273|ref|NP_189420.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] gi|50401174|sp|Q9LK94.1|MDAR2_ARATH RecName: Full=Probable monodehydroascorbate reductase, cytoplasmic isoform 2; Short=MDAR 2 gi|11994487|dbj|BAB02528.1| cytosolic monodehydroascorbate reductase [Arabidopsis thaliana] gi|14532712|gb|AAK64157.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|22136780|gb|AAM91734.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332643846|gb|AEE77367.1| monodehydroascorbate reductase (NADH) [Arabidopsis thaliana]

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/488 (77%), Positives = 425/488 (87%), Gaps = 9/488 (1%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFT+RGV  GELCIISEEPVAPYERPALSKG+LLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGAN+E+LTPKWY +HGIELVLGTRVKS DVRRKTL+++TGETISYK LIIA
Sbjct: 61  RLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGARALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAAS
Sbjct: 121 TGARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV A
Sbjct: 181 LVINKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNL+DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA F
Sbjct: 241 VNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G
Sbjct: 301 PVKLFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTG 360

Query: 361 EVVHYGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQ 418
           +VVH+G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +
Sbjct: 361 DVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELERE 420

Query: 419 GLGFA-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYW 471
           GLGFA   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+W
Sbjct: 421 GLGFAHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFW 480

Query: 472 YGRRRRRW 479
           YGRRRRRW
Sbjct: 481 YGRRRRRW 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815040|ref|XP_002875403.1| ATMDAR4 [Arabidopsis lyrata subsp. lyrata] gi|297321241|gb|EFH51662.1| ATMDAR4 [Arabidopsis lyrata subsp. lyrata]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/488 (76%), Positives = 423/488 (86%), Gaps = 9/488 (1%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
           MGRAFVYVI+GGGVAAGYAALEFT+RGV  GELCIISEEPVAPYERPALSKG+LLPEAPA
Sbjct: 1   MGRAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPA 60

Query: 61  RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
           RLPSFHTCVGAN+E+LTPKWY +HGIELVLGTRVKS DVRRKTL+++TGETISYK LIIA
Sbjct: 61  RLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIA 120

Query: 121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
           TGAR LKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAAS
Sbjct: 121 TGARPLKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAAS 180

Query: 181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
           LVINKINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKFVKGTVL+SF+ DSN KV A
Sbjct: 181 LVINKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFVKGTVLTSFEFDSNKKVTA 240

Query: 241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           VNL+DG+ L  D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA F
Sbjct: 241 VNLKDGSHLSADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATF 300

Query: 301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
           P+KL GE RRLEHVDSARKSA+HAV+AIM+P KT +FDYLPFFYSRVF  SWQFYGD  G
Sbjct: 301 PVKLFGEMRRLEHVDSARKSARHAVSAIMDPIKTGEFDYLPFFYSRVFAFSWQFYGDPTG 360

Query: 361 EVVHYGNF-SGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQ 418
           +VVH+G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +
Sbjct: 361 DVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELERE 420

Query: 419 GLGFA-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYW 471
           GL FA   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+W
Sbjct: 421 GLRFAHTVVSQQKVPEVKDIPSAEMVRQSASVVMIKKPLYVWHAATGVVVAASVAAFAFW 480

Query: 472 YGRRRRRW 479
           YGRRRRRW
Sbjct: 481 YGRRRRRW 488

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242062770|ref|XP_002452674.1| hypothetical protein SORBIDRAFT_04g030440 [Sorghum bicolor] gi|241932505|gb|EES05650.1| hypothetical protein SORBIDRAFT_04g030440 [Sorghum bicolor]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/483 (72%), Positives = 400/483 (82%), Gaps = 11/483 (2%)

Query: 1   MGRAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPVAPYERPALSKGYLLPEAP 59
           MGRAFVYVI+GGGVAAGYA LEF +RG    GELCIISEE VAPYERPALSKGYLLPE  
Sbjct: 1   MGRAFVYVILGGGVAAGYAVLEFARRGGYSRGELCIISEEAVAPYERPALSKGYLLPEGA 60

Query: 60  ARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILII 119
           ARLP FHTCVGAN+E LT KWY E GIELVLGT+V SADVRRKTL+T TGETISYK LII
Sbjct: 61  ARLPGFHTCVGANDELLTTKWYKEQGIELVLGTKVISADVRRKTLLTGTGETISYKTLII 120

Query: 120 ATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAA 179
           ATGARALKL+EFG+ GSDA N+CYLR++ DA++LV+ MKSC GGNAVVIGGGYIGMECAA
Sbjct: 121 ATGARALKLQEFGIQGSDASNICYLRNIDDADKLVSAMKSCPGGNAVVIGGGYIGMECAA 180

Query: 180 SLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239
           +LV NKI VTMVFPE HCM RLFTPKIA +YE YY SKGV FVKGTVL+SF+ D+ GKV 
Sbjct: 181 ALVTNKIRVTMVFPEKHCMGRLFTPKIAEFYENYYTSKGVTFVKGTVLTSFEKDTTGKVT 240

Query: 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 299
           AV L+DG  LP DMVVVGIGIR NTSLFEGQL +E GGIKV G+LQ+S+SSVYAVGDVAA
Sbjct: 241 AVILKDGRHLPADMVVVGIGIRANTSLFEGQLMMENGGIKVNGQLQTSDSSVYAVGDVAA 300

Query: 300 FPLKLL-GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDN 358
           FP+KL  G+ RRLEHVDSAR++A+HAVA+I+EP K    DYLPFFYSRVFTLSWQFYGDN
Sbjct: 301 FPIKLFDGDIRRLEHVDSARRTARHAVASILEPSKNKDIDYLPFFYSRVFTLSWQFYGDN 360

Query: 359 VGEVVHYGNFSGTT--FGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE 416
           VGEVVH+G+F+ ++  FGAYWVNKGR+ G+FLEGG++EEYEAI+ A R + +V ++ ELE
Sbjct: 361 VGEVVHFGDFTSSSPRFGAYWVNKGRIAGAFLEGGSREEYEAISIAVRRKAMVTNMGELE 420

Query: 417 TQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYWYGRRR 476
            QGL  A+  SQK +P + +        ++GK  Y  HATAGV+ A SIAA  YWYGR+R
Sbjct: 421 KQGLALAIQESQKEVPDSGL-------AIVGKPTYTWHATAGVVAAVSIAAIGYWYGRKR 473

Query: 477 RRW 479
           RRW
Sbjct: 474 RRW 476

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2086430	488	MDAR4 "monodehydroascorbate re	1.0	0.981	0.743	2.5e-193
TAIR|locus:2085176	466	MDAR1 "monodehydroascorbate re	0.845	0.869	0.541	1.3e-118
TAIR|locus:2144588	435	ATMDAR2 [Arabidopsis thaliana	0.839	0.924	0.535	2.2e-112
TAIR|locus:2100143	441	MDHAR "monodehydroascorbate re	0.839	0.911	0.497	5.3e-104
TAIR|locus:2195503	493	MDAR6 "monodehydroascorbate re	0.843	0.819	0.443	5.7e-91
TIGR_CMR|SPO_3737	403	SPO_3737 "pyridine nucleotide-	0.638	0.759	0.356	1.6e-38
UNIPROTKB|P95146	411	Rv1869c "Probable reductase" [	0.711	0.829	0.292	1e-36
UNIPROTKB|Q9L4M8	385	alkT "Rubredoxin-NAD(+) reduct	0.586	0.729	0.327	6.7e-33
WB|WBGene00017640	549	F20D6.11 [Caenorhabditis elega	0.674	0.588	0.284	1.2e-32
UNIPROTKB|Q19655	549	F20D6.11 "Protein F20D6.11" [C	0.674	0.588	0.284	1.2e-32

TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1873 (664.4 bits), Expect = 2.5e-193, P = 2.5e-193
 Identities = 363/488 (74%), Positives = 410/488 (84%)

Query:     1 MGRAFXXXXXXXXXXXXXXXLEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA 60
             MGRAF               LEFT+RGV  GELCIISEEPVAPYERPALSKG+LLPEAPA
Sbjct:     1 MGRAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPA 60

Query:    61 RLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIA 120
             RLPSFHTCVGAN+E+LTPKWY +HGIELVLGTRVKS DVRRKTL+++TGETISYK LIIA
Sbjct:    61 RLPSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIA 120

Query:   121 TGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
             TGARALKLEEFG+ GSDAENVCYLRDLADANRL  V++S S GNAVVIGGGYIGMECAAS
Sbjct:   121 TGARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAAS 180

Query:   181 LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 240
             LVINKINVTMVFPEAHCMARLFTPKIAS YE+YY++KGVKF+KGTVL+SF+ DSN KV A
Sbjct:   181 LVINKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTA 240

Query:   241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
             VNL+DG+ LP D+VVVGIGIRPNTSLFEGQLT+EKGGIKV  R+QSS+SSVYA+GDVA F
Sbjct:   241 VNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATF 300

Query:   301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
             P+KL GE RRLEHVDSARKSA+HAV+AIM+P KT  FDYLPFFYSRVF  SWQFYGD  G
Sbjct:   301 PVKLFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFSWQFYGDPTG 360

Query:   361 EVVHYGNFS-GTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVE-DLAELETQ 418
             +VVH+G +  G +FGAYWV KG LVGSFLEGGTKEEYE I+KAT+L+P V  DL ELE +
Sbjct:   361 DVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELERE 420

Query:   419 GLGFA-LAVSQ------KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVILAASIAAFAYW 471
             GLGFA   VSQ      K +PS  +  ++   +++ K LY  HA  GV++AAS+AAFA+W
Sbjct:   421 GLGFAHTVVSQQKVPEVKDIPSAEMVKQSASVVMIKKPLYVWHAATGVVVAASVAAFAFW 480

Query:   472 YGRRRRRW 479
             YGRRRRRW
Sbjct:   481 YGRRRRRW 488

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IMP;IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP;TAS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
 Identities = 223/412 (54%), Positives = 297/412 (72%)

Query:    22 EFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81
             EF  +GV PGEL +IS+E VAPYERPALSKGYL PE  ARLP FH CVG+  E+L P+ Y
Sbjct:    55 EFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARLPGFHCCVGSGGEKLLPESY 114

Query:    82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENV 141
              + GIEL+L T +  AD+  K+LV+ATG+   Y+ LIIATG+  L+L +FG+ G+D++N+
Sbjct:   115 KQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGADSKNI 174

Query:   142 CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL 201
              YLR++ DA++LV  +K+  GG AVV+GGGYIG+E +A L IN ++VTMVFPE  CM RL
Sbjct:   175 LYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPWCMPRL 234

Query:   202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261
             FT  IA++YE YY +KGVK +KGTV S F    NG+V  V L+DG  L  D+V+VG+G +
Sbjct:   235 FTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAK 294

Query:   262 PNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 321
             P TSLF+GQ+  +KGGIK     ++S   VYAVGDVA FPLK+ G+ RR+EHVD +RKSA
Sbjct:   295 PLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSA 354

Query:   322 KHAVAAIMEPD---KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTT----FG 374
             + AV AI   +     +++DYLPFFYSR F LSWQFYGDNVG+ V +G+ + +     FG
Sbjct:   355 EQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNPKPRFG 414

Query:   375 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAV 426
             AYWV  G++VG+F+EGG+ +E +A+AK  + +P  E L EL  QG+ FA  +
Sbjct:   415 AYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 466

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;TAS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 219/409 (53%), Positives = 282/409 (68%)

Query:    22 EFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81
             EF  +GV PGEL IIS E V PYERPALSKGY+  E  A LP+F+   G   ER  P+WY
Sbjct:    24 EFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKATLPNFYVAAGIGGERQFPQWY 83

Query:    82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENV 141
              E GIEL+LGT +  AD+  KTLV+ TG+   Y+ L+ ATG+  ++L +FG+ G+DA+N+
Sbjct:    84 KEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADAKNI 143

Query:   142 CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL 201
              YLR+L DA+ L   M++   G AVV+GGGYIG+E  A+L  N ++VTMV+PE  CM RL
Sbjct:   144 FYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCMPRL 203

Query:   202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 261
             FT  IAS+YE YY +KG+  VKGTV S F  +SNG+V  V L+DG  L  D+V+VG+G R
Sbjct:   204 FTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGR 263

Query:   262 PNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 321
             P  SLF+ Q+  EKGG+K  G  ++S   VYA+GDVA FP+KL  E RR+EHVD ARKSA
Sbjct:   264 PIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSA 323

Query:   322 KHAVAAIM---EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTT----FG 374
             + AV AI    E +   ++DYLP+FYSR F LSWQFYGDNVGE V +G+    +    FG
Sbjct:   324 EQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGESVLFGDNDPESPKPKFG 383

Query:   375 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA 423
             +YW+ + ++VG+FLEGG+ EE  AIAK  R QP VE L  L  +GL FA
Sbjct:   384 SYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFA 432

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 204/410 (49%), Positives = 276/410 (67%)

Query:    22 EFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY 81
             EF+ +G+ PGEL IIS+EPV P+ERP L+K Y+  E    L + + C G  E +  P WY
Sbjct:    24 EFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPTLANIYVCAGTGEAKQYPNWY 83

Query:    82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENV 141
              E GI+L++GT +  AD+  KTLV+  G+   Y+ L+IATG+  ++L E G+  +D +N+
Sbjct:    84 KEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSEIGVQEADVKNI 143

Query:   142 CYLRDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200
              YLR++ D++ L   M+     G AV+IGGG++G+E +++L  N   VTMVFPE   + R
Sbjct:   144 FYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPWLVHR 203

Query:   201 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260
              FT +IAS+YE YY +KG+K +KGTV + F  +S+G+V  V L DG  L  ++VV G+G 
Sbjct:   204 FFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGA 263

Query:   261 RPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS 320
             RP TSLF+GQL  EKGGIK  G  ++S   VYA+GDVA FP+K+ G TRR+EH D+ARKS
Sbjct:   264 RPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKS 323

Query:   321 AKHAVAAIM--EPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTT----F 373
             A  AV AI   E  KT   +DYLP+FYSR F LSW+FYG+NVGE V +G+    +    F
Sbjct:   324 AAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGESVLFGDNDPKSPKPKF 383

Query:   374 GAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA 423
             G YWV  G++VG FLEGGT+EE++AIAK  R QP VE L  L  +GL FA
Sbjct:   384 GTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSEEGLSFA 433

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016656 "monodehydroascorbate reductase (NADH) activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0043903 "regulation of symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 187/422 (44%), Positives = 256/422 (60%)

Query:    23 FTKRGVPPGELCIISEEPVAPYERPALSKGYLLP--EAPARLPSFHTCVGANEERLTPKW 80
             F + G+  G LCI+++E  APYERPAL+K YL P  + PARLP FHTCVG   ER TP W
Sbjct:    79 FVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHTCVGGGGERQTPDW 138

Query:    81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN 140
             Y E GIE++    V  AD  ++TL T  G+ + Y  LIIATG  A +  +    G     
Sbjct:   139 YKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASRFPD--KIGGHLPG 196

Query:   141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200
             V Y+R++ADA+ L+  +        V++GGGYIGME AA+ V   ++ T+VFPE   + R
Sbjct:   197 VHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEVAAAAVAWNLDTTIVFPEDQLLQR 254

Query:   201 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260
             LFTP +A  YEE Y+  GVKFVKG  +++ +  S+G+V AV L DG+ +  D VV+GIG 
Sbjct:   255 LFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGA 314

Query:   261 RPNTSLFEGQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318
             +P    FE  L + K  GGI+V G  ++S   ++A+GDVAAFPLK+     R+EHVD AR
Sbjct:   315 KPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHAR 373

Query:   319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLS-------WQFYGDNVGEVVHYGNFSGT 371
             +SA+H V +++    TD +DYLP+FYSRVF          WQF+GDNVGE V  GNF   
Sbjct:   374 RSAQHCVKSLLTAH-TDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFD-P 431

Query:   372 TFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPL 431
                 +W+  GRL G  +E G+ EE++ + K  R QP+V+         +  AL ++Q  L
Sbjct:   432 KIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEIAQAAL 491

Query:   432 PS 433
              S
Sbjct:   492 QS 493

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 119/334 (35%), Positives = 172/334 (51%)

Query:    31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERL--TPK-WYNEHGIE 87
             GE+ +I  EPV PY+RP LSK YLL E               +ERL   P+ +Y E  I 
Sbjct:    27 GEITLIGAEPVPPYQRPPLSKAYLLGEM-------------EKERLFLRPESFYAEQNIA 73

Query:    88 LVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDL 147
             L L  RV + D   KT V+  GE I Y  L + TG+   +L      G D   V  +RDL
Sbjct:    74 LRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSEPRRLP--AAIGGDLAGVHVVRDL 130

Query:   148 ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA 207
             AD + +   +    G  A+++GGGYIG+E AA      + VT+V      + R+  P+ +
Sbjct:   131 ADIDAMAPSVTE--GARALIVGGGYIGLEAAAVCAKRGVQVTLVEMADRILQRVAAPETS 188

Query:   208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267
             +Y+   +   GV   +G  L+   + + G+V    L DG+ LP D+VVVG+GI P T+L 
Sbjct:   189 AYFRALHTGHGVDIREGVGLTRL-IGAQGRVTGAVLTDGSELPVDLVVVGVGIAPATALA 247

Query:   268 EGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA 326
             E   L LE G I+   + ++S+ S++A GD A+FP K  G   RLE V +A   A+  VA
Sbjct:   248 EAAGLVLENG-IRTDAQGRTSDPSIWAAGDCASFPYK--GGRIRLESVPNAIDQAE-TVA 303

Query:   327 AIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
               M+    D +   P+F+S  + +  Q  G N G
Sbjct:   304 QNMQGAGKD-YVAQPWFWSDQYDVKLQIAGLNTG 336

GO:0008152 "metabolic process" evidence=ISS

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 106/362 (29%), Positives = 177/362 (48%)

Query:    21 LEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW 80
             +E  +R    G + +  +E   PY+RP LSK +L  +    L  F           T  W
Sbjct:    20 VEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFLAGKKS--LSDFTI--------QTSDW 69

Query:    81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN 140
             Y +H +++ LG RV S D    T+    G  + Y  L++ATG+   +     + GSDA  
Sbjct:    70 YRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGSAPRRPP---IPGSDAAG 126

Query:   141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200
             V YLR   DA  L +V+    G +  V+G G+IG+E AAS     ++VT+V      +  
Sbjct:   127 VHYLRSYNDAVALNSVL--VQGSSLAVVGAGWIGLEVAASARQRGVDVTVVETAIQPLLA 184

Query:   201 LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 260
                  +   + + ++ +GV     T L      ++GK   + +RDG+ +  D V+V +G 
Sbjct:   185 ALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGLKMRDGSTVAADAVLVAVGA 243

Query:   261 RPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK 319
             +PN  L +   L + +GG+ V   L++S+  +YAVGD+AA    LLG   R EH  +A K
Sbjct:   244 KPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRTEHWANALK 303

Query:   320 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD--NVGEVVHYGNFSGTTFGAYW 377
                 A A ++   +  ++  LP+ ++  + L  ++ G   +   VV  GN +G  F ++W
Sbjct:   304 QPAVAAAGML--GRPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFRGNVAGREFLSFW 361

Query:   378 VN 379
             ++
Sbjct:   362 LD 363

GO:0005576 "extracellular region" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9L4M8 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas putida (taxid:303)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 98/299 (32%), Positives = 150/299 (50%)

Query:    31 GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
             G + ++S E V PY+RP LSK +L  E         + +    E     +Y  + I + L
Sbjct:    26 GGIRLLSRESVTPYQRPPLSKAFLTSETA------ESAIPLKPE----SFYTNNNISISL 75

Query:    91 GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
              T++ S DV RK +    GE  +Y+ LI+ATGA A +L      GS+   VCYLR + DA
Sbjct:    76 NTQIVSIDVGRKVVAAKDGEEYAYEKLILATGASARRLT---CEGSELSGVCYLRSMEDA 132

Query:   151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
               L    K     + VV+GGG IG+E A++ V     VT++      MAR+ TP  A+  
Sbjct:   133 KNLRR--KLVESASVVVLGGGVIGLEVASAAVGIGRRVTVIEAAPRVMARVVTPAAANLV 190

Query:   211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 270
                 +++GV F     L+S     NG V    L  G ++  D+++VGIG  P   L   +
Sbjct:   191 RARLEAEGVGFKLNAKLTSIK-GRNGHVNQCVLESGEKIQADLIIVGIGAIPELELAT-E 248

Query:   271 LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 328
               LE   G+ V  ++++S++S+YA+GD A       G   RLE + +A   A+   ++I
Sbjct:   249 AALEVSNGVVVDDQMRTSDTSIYAIGDCALARNLFFGTMVRLETIHNAVTQAQIVASSI 307

GO:0015046 "rubredoxin-NADP reductase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)]

 Score = 341 (125.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 97/341 (28%), Positives = 172/341 (50%)

Query:    80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE 139
             +Y E  ++ +L T V + + + + +  + GET+ Y  LIIATG    KL+   + GSD +
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
             N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++      + 
Sbjct:   263 NICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   200 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
              +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++V GIG
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   260 IRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRLEHVDS 316
             + P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  ++H  +
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNFSGTTF 373
             A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+    TF
Sbjct:   439 AQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPETGTF 496

Query:   374 GAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 412
               Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   497 IRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)]

 Score = 341 (125.1 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 97/341 (28%), Positives = 172/341 (50%)

Query:    80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE 139
             +Y E  ++ +L T V + + + + +  + GET+ Y  LIIATG    KL+   + GSD +
Sbjct:   206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262

Query:   140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
             N+CYLR + +AN + N+     G + V +G  +IGME A++L     +VT++      + 
Sbjct:   263 NICYLRKVEEANIISNLHP---GKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319

Query:   200 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
              +F   I       ++ KGVKF     + +   +  G+V  V L +G  L  D++V GIG
Sbjct:   320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378

Query:   260 IRPNTSLFEGQ-LTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG-ETRRLEHVDS 316
             + P T   EG  + L+ +G I+V  + +++ S ++A+GDV   PL L   ++  ++H  +
Sbjct:   379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438

Query:   317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVGEVVHY--GNFSGTTF 373
             A+   +H    I+   K      +P+F++  F     +F G N G    Y  G+    TF
Sbjct:   439 AQAHGQHLGYTIV--GKPQPGPIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPETGTF 496

Query:   374 GAYWVNKGRLVGSFLEGGTKEEYEAIAKATR--LQPVVEDL 412
               Y++ K ++V +   GG        A+  +  ++  ++DL
Sbjct:   497 IRYFLKKDKVV-AVAAGGPSSVASQFAEIFKKGIEVTLKDL 536

GO:0005739 "mitochondrion" evidence=ISS

GO:0051882 "mitochondrial depolarization" evidence=ISS

GO:0008656 "cysteine-type endopeptidase activator activity involved in apoptotic process" evidence=ISS

GO:0008635 "activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c" evidence=ISS

GO:0006917 "induction of apoptosis" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42711	MDARS_CUCSA	1, ., 6, ., 5, ., 4	0.5641	0.8810	0.9723	N/A	no
Q9LK94	MDAR2_ARATH	1, ., 6, ., 5, ., 4	0.7725	1.0	0.9815	yes	no
Q40977	MDAR_PEA	1, ., 6, ., 5, ., 4	0.5418	0.8830	0.9769	N/A	no
Q43497	MDAR_SOLLC	1, ., 6, ., 5, ., 4	0.5584	0.8768	0.9699	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.6.5.4	0.914
3rd Layer	1.6.5	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020720001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (478 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025312001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (609 aa)						•	•		0.905
	GSVIVG00015409001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (421 aa)						•	•		0.902
	GSVIVG00024455001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)						•	•		0.900
	GSVIVG00036111001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (289 aa)						•			0.899
	GSVIVG00017414001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (575 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-52
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	6e-44
PRK09754	396	PRK09754, PRK09754, phenylpropionate dioxygenase f	3e-43
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	8e-38
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	2e-29
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	6e-29
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	3e-28
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	4e-23
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-20
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	4e-20
PRK14989	847	PRK14989, PRK14989, nitrite reductase subunit NirD	2e-17
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	1e-15
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	3e-15
TIGR02053	463	TIGR02053, MerA, mercuric reductase	3e-15
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-14
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	8e-14
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	1e-13
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-13
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	5e-13
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	2e-12
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	8e-11
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	6e-10
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	7e-10
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	8e-10
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	4e-09
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	5e-09
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	7e-09
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-08
PTZ00318	424	PTZ00318, PTZ00318, NADH dehydrogenase-like protei	2e-08
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	2e-08
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	3e-08
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	1e-07
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	5e-07
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	5e-07
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	8e-07
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	9e-07
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	1e-06
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	2e-06
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	2e-06
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-06
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	8e-06
PRK10262	321	PRK10262, PRK10262, thioredoxin reductase; Provisi	1e-05
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	1e-05
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-05
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-05
PLN02507	499	PLN02507, PLN02507, glutathione reductase	6e-05
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	8e-05
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	2e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	3e-04
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	5e-04
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	6e-04
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	9e-04
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	0.004

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  179 bits (455), Expect = 1e-52
 Identities = 103/301 (34%), Positives = 142/301 (47%), Gaps = 24/301 (7%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VI+GGG A   AA+   + G    ++ +I  E    Y R  L K  LL  A        
Sbjct: 2   VVIIGGGPAGLAAAIRLARLG---LKVALIEREGGTCYNRGCLPKKLLLEVAEGLEL--- 55

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA---TGETISYKILIIATGA 123
               A    L  + Y E G+E++LGT V   D   KT+V     TG  I+Y  LIIATGA
Sbjct: 56  ----AIGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGA 111

Query: 124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI 183
           R       G+ G     V  LR + D++ ++ +++       VV+GGGYIG+E AA+L  
Sbjct: 112 RPRIP---GIPG---VEVATLRGVIDSDEILELLEL--PKRVVVVGGGYIGLELAAALAK 163

Query: 184 NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 243
               VT+V      +AR    +I++   E  +   +      V+       +GKVV V L
Sbjct: 164 LGKEVTVVERRDRLLARAD-DEISAALLEKLEKLLLGVTVLLVVVVVVKVGDGKVVEVKL 222

Query: 244 RDGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 301
            DG  L  D+V+V IG RPNT L E  G    E+G I V   L++S   +YA GDVA   
Sbjct: 223 GDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGK 282

Query: 302 L 302
            
Sbjct: 283 P 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score =  159 bits (403), Expect = 6e-44
 Identities = 121/432 (28%), Positives = 167/432 (38%), Gaps = 44/432 (10%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VIVGGG AAG +A    +R +   E+ +I  EP   Y R  LS       A        
Sbjct: 1   IVIVGGG-AAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASL------ 53

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126
                 + R  P++    GI++  GT V S D   K ++   GE I Y  L++ATGAR  
Sbjct: 54  -----EDLRYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDGE-IEYDYLVLATGAR-- 105

Query: 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 186
                    SD E V  LR   DA  L    +     + VV+G G IG+E A +      
Sbjct: 106 ---PRPPPISDWEGVVTLRLREDAEALKGGAEP--PKDVVVVGAGPIGLEAAEAAAKRGK 160

Query: 187 NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRD 245
            VT++        +L  P++A    E  +  GV+ + GT +   +   N  VV  V   D
Sbjct: 161 KVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220

Query: 246 GNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQSSNS-SVYAVGDVAAFP 301
           G  +  D+V++G G RPN  L       L L  G + V  R  +S    VYA GDVA  P
Sbjct: 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280

Query: 302 LKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTL----SWQFYGD 357
               G+  R+     A  + +  +AA            L    S V  L    +    G 
Sbjct: 281 AAETGKGGRIALWAIAVAAGR--IAAENIAGALRIPGLLGTVISDVGDLCAASTGLTEGK 338

Query: 358 NVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEG-------------GTKEEYEAIAKATR 404
             G  V      G    A+      LVG  L G                +   A+A A  
Sbjct: 339 ERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQELEVLKRIGALALAIG 398

Query: 405 LQPVVEDLAELE 416
           L   V +L  L+
Sbjct: 399 LGDTVAELDALD 410

Length = 415

>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

 Score =  157 bits (397), Expect = 3e-43
 Identities = 113/394 (28%), Positives = 176/394 (44%), Gaps = 39/394 (9%)

Query: 3   RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARL 62
           +    +IVGGG AA  AA    ++G   GEL + S+E   PYERP LSK  LL ++P   
Sbjct: 2   KEKTIIIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERPPLSKSMLLEDSPQL- 59

Query: 63  PSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
                     ++ L   W+ E+ + L  G  +K+     + LV   GE+  +  L IATG
Sbjct: 60  ----------QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATG 109

Query: 123 ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV 182
           A A       L  +  E    LR   DA RL  V++     + V++G G IG+E AAS  
Sbjct: 110 AAA---RPLPLLDALGERCFTLRHAGDAARLREVLQP--ERSVVIVGAGTIGLELAASAT 164

Query: 183 INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242
             +  VT++   A  M R   P +  Y  + ++  GV+ +    +       +G+ V + 
Sbjct: 165 QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHV---VDGEKVELT 221

Query: 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
           L+ G  L  D+V+ GIGI  N  L          GI +    ++ + +++A GDVA   L
Sbjct: 222 LQSGETLQADVVIYGIGISANDQLAREANLDTANGIVIDEACRTCDPAIFAGGDVAITRL 281

Query: 303 KLLGETRRLEHVDSARKSAKHAVAAIM--EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG 360
              G   R E  ++A   A+ A AA++             P+F+S  ++ + QF GD  G
Sbjct: 282 D-NGALHRCESWENANNQAQIAAAAMLGLPLPLLPP----PWFWSDQYSDNLQFIGDMRG 336

Query: 361 EVVH------------YGNFSGTTFGAYWVNKGR 382
           +               +   +G   GA  +N+GR
Sbjct: 337 DDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGR 370

Length = 396

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score =  146 bits (371), Expect = 8e-38
 Identities = 90/294 (30%), Positives = 130/294 (44%), Gaps = 20/294 (6%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VI+G G+A      E  +      ++ +  EEP   Y R  LS   L  E  A   S + 
Sbjct: 7   VIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKTAEDISLNR 65

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                       WY E+GI L  G +V   D   K + T  G T+SY  LIIATG+    
Sbjct: 66  ----------NDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFI 115

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L    + GSD   V   R + D   +++  ++     AVVIGGG +G+E A  L    + 
Sbjct: 116 LP---IPGSDLPGVFVYRTIDDVEAMLDCARNKKK--AVVIGGGLLGLEAARGLKDLGME 170

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           VT+V      M R              +  G+K +      + ++    KV  V   DG 
Sbjct: 171 VTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKN--TEEIVGEDKVEGVRFADGT 228

Query: 248 RLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
            +P D+VV+ +GIRPN  L  E  L + + GI V   +Q+S+  +YAVG+ A  
Sbjct: 229 EIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEH 281

Length = 793

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score =  119 bits (299), Expect = 2e-29
 Identities = 73/252 (28%), Positives = 113/252 (44%), Gaps = 18/252 (7%)

Query: 58  APARLPSFHTCVGANEERL---TP-KWYNEHGIELVLGTRVKSADVRRKTLVT---ATGE 110
           A   LP     V  +  +L   TP  +  + GI++     V   +  R+T+V     T E
Sbjct: 27  ANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNE 86

Query: 111 TI--SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVI 168
           T   SY  LI++ GA  +      + G + + V  LR+L D + +   +      N V+I
Sbjct: 87  TYEESYDYLILSPGASPIVP---NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVII 143

Query: 169 GGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS 228
           GGGYIG+E A +L     NVT++      + +LF  ++    EE  K   +       L+
Sbjct: 144 GGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINL----RLN 199

Query: 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTL-EKGGIKVTGRLQS 286
                  G+        G     DMV++  GI+PN+ L +   L L E G I V  + Q+
Sbjct: 200 EEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT 259

Query: 287 SNSSVYAVGDVA 298
           S  ++YA GDVA
Sbjct: 260 SVPNIYAAGDVA 271

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score =  118 bits (297), Expect = 6e-29
 Identities = 83/307 (27%), Positives = 130/307 (42%), Gaps = 41/307 (13%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE-RPALSKGYLLPEAPARLPSFH 66
           +I+ GG AAG +A    KR     E+ +        YE    +S G         LP F 
Sbjct: 3   IIIIGGTAAGMSAAAKAKRLNKELEITV--------YEKTDIVSFG------ACGLPYF- 47

Query: 67  TCVGA---NEERL---TPKWYNEHGIELVLGTRVKSADVRRKTLVT---ATGETI--SYK 115
             VG    +   +   TP+ + + GI++     V   D + KT+      TG     +Y 
Sbjct: 48  --VGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYD 105

Query: 116 ILIIATGARAL--KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYI 173
            L+IATGAR +   ++       + ENV  L+ + D   L  ++K     N V+IG G+I
Sbjct: 106 KLMIATGARPIIPPIKNI-----NLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI 160

Query: 174 GMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 233
           G+E   +      NV ++  E   +   F  +I    EE  +  GV+      + S   +
Sbjct: 161 GLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGE 220

Query: 234 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSV 291
              + V     D      D+V+V  G++PNT   E     TL+ G I V    ++S  ++
Sbjct: 221 DKVEGVVT---DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENI 277

Query: 292 YAVGDVA 298
           YA GD A
Sbjct: 278 YAAGDCA 284

Length = 444

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score =  118 bits (297), Expect = 3e-28
 Identities = 84/292 (28%), Positives = 131/292 (44%), Gaps = 18/292 (6%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V+VG G+A      E  K      E+ I  EEP   Y R  LS   L  EA     +   
Sbjct: 2   VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGEADLDDITL-- 58

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
               N +     WY +HGI L  G  V   D  +K ++T  G T+SY  LI+ATG+    
Sbjct: 59  ----NSK----DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFI 110

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L    + G+D + V   R + D + ++ + +      A VIGGG +G+E A  L    ++
Sbjct: 111 LP---IPGADKKGVYVFRTIEDLDAIMAMAQRFK--KAAVIGGGLLGLEAAVGLQNLGMD 165

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           V+++      MA+          +   + KG+ F+      + ++    K   +  +DG+
Sbjct: 166 VSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEK--DTVEIVGATKADRIRFKDGS 223

Query: 248 RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAA 299
            L  D++V+  GIRPN  L          GI V   +Q+S+  +YAVG+ A 
Sbjct: 224 SLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAE 275

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score =  100 bits (251), Expect = 4e-23
 Identities = 61/232 (26%), Positives = 93/232 (40%), Gaps = 40/232 (17%)

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL--------------K 127
            +  + L   T V   D   +  V + G    Y  L++ATGA A                
Sbjct: 69  EQFNLRLFPHTWVTDIDAEAQV-VKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNS 127

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
            +E+  + +          L DA R   V+         V+GGG IG E A  L      
Sbjct: 128 QQEYRAAETQ---------LRDAQR---VL---------VVGGGLIGTELAMDLCRAGKA 166

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           VT+V   A  +A L  P+++S  +      GV  +  + L    ++     +   L  G 
Sbjct: 167 VTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQG--LEKTDSGIRATLDSGR 224

Query: 248 RLPTDMVVVGIGIRPNTSLF-EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVA 298
            +  D V+   G+RPNT+L     L + + GI V   LQ+S   +YA+GD A
Sbjct: 225 SIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCA 275

Length = 377

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 93.0 bits (232), Expect = 2e-20
 Identities = 71/275 (25%), Positives = 113/275 (41%), Gaps = 46/275 (16%)

Query: 79  KWYNEHGIELVLGT-RVKSADVRRKTLV--TATGETISYKILIIATGARALKLEEFGLSG 135
               ++G++++ G  R         T+       ETI+   +IIATG+R       G+ G
Sbjct: 102 GLLKKNGVDVIRGEARFVDP----HTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDG 157

Query: 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFP 193
                +    D      L    KS      V++GGGYIG+E A   V   +   VT+V  
Sbjct: 158 ---ARILDSSDALFLLEL---PKS-----LVIVGGGYIGLEFA--SVFAALGSKVTVVER 204

Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
               +     P+I+    +  +  GVK +  T +++ +   +G +V +   +G  +  D 
Sbjct: 205 GDRILPG-EDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADA 263

Query: 254 VVVGIGIRPNTSLFEGQLTLEK--------GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305
           V+V IG +PNT      L LE         G IKV  ++ ++   +YA+GDV   P+   
Sbjct: 264 VLVAIGRKPNT----DGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM--- 316

Query: 306 GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYL 340
                L HV  A    + A   I    K    DY 
Sbjct: 317 -----LAHV--AMAEGRIAAENIAG-GKRTPIDYR 343

Length = 454

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 91.9 bits (229), Expect = 4e-20
 Identities = 86/325 (26%), Positives = 127/325 (39%), Gaps = 58/325 (17%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VI+GGG     AA    ++     E+ ++       +  P      LL E      S   
Sbjct: 7   VILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYHLFT-P------LLYEVATGTLSESE 58

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                   L  K      ++ V G  V   D   K +  A    ISY  L++A G+    
Sbjct: 59  IA-IPLRALLRKS---GNVQFVQGE-VTDIDRDAKKVTLADLGEISYDYLVVALGSET-- 111

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSC-------SGGNA----VVIGGGYIGME 176
              FG+ G+ AE    L+ L DA RL   +              A    V++GGG  G+E
Sbjct: 112 -NYFGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVE 169

Query: 177 CAASL------------VIN-KINVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVK 220
            A  L            V   ++ V +V  EA    R+   F PK++ Y E   +  GV+
Sbjct: 170 LAGELAERLHRLLKKFRVDPSELRVILV--EA--GPRILPMFPPKLSKYAERALEKLGVE 225

Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FEGQLTLEKGG 277
            + GT ++   V  +G    V L+DG   +P D VV   G+R +  L    G  T  +G 
Sbjct: 226 VLLGTPVTE--VTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279

Query: 278 IKVTGRLQS-SNSSVYAVGDVAAFP 301
           + V   LQ   +  ++A GD AA  
Sbjct: 280 LVVNPTLQVPGHPDIFAAGDCAAVI 304

Length = 405

>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 77/306 (25%), Positives = 135/306 (44%), Gaps = 28/306 (9%)

Query: 8   VIVGGGVAAGYAALE--FTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSF 65
            I+G G+  G+  +E    K      ++ +  EEP   Y+R  LS  +          S 
Sbjct: 7   AIIGNGMV-GHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYF----------SH 55

Query: 66  HTCVGANEERLT-PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR 124
           HT   A E  L    +Y +HGI++++G R  + + + K + ++ G T+ Y  LI+ATG+ 
Sbjct: 56  HT---AEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSY 112

Query: 125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 184
                   + GS+ ++    R + D N +    +    G   V+GGG +G+E A +L   
Sbjct: 113 PWIPP---IKGSETQDCFVYRTIEDLNAIEACARRSKRG--AVVGGGLLGLEAAGALKNL 167

Query: 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244
            +   ++      MA               +S GV+    T  ++ ++   G      +R
Sbjct: 168 GVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRV--HTSKNTLEIVQEGVEARKTMR 225

Query: 245 --DGNRLPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
             DG+ L  D +V   GIRP   L    G     +GGI +    Q+S+  +YA+G+ A++
Sbjct: 226 FADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASW 285

Query: 301 PLKLLG 306
             ++ G
Sbjct: 286 NNRVFG 291

Length = 847

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 78.8 bits (195), Expect = 1e-15
 Identities = 78/276 (28%), Positives = 112/276 (40%), Gaps = 56/276 (20%)

Query: 84  HGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLSG-----S 136
           HGI  +LG  + S      ++ T TG  E I  + L+IATG+R ++L      G     S
Sbjct: 111 HGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISS 170

Query: 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 196
           D           +A  L  + KS      V++GGG IG+E A+ L    + VT+V  EA 
Sbjct: 171 D-----------EALSLETLPKSL-----VIVGGGVIGLEWASMLADFGVEVTVV--EA- 211

Query: 197 CMARLFTPKIASYY--------EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN- 247
                   +I                K  GV+ V G  +    +  +G V+ V   +G  
Sbjct: 212 ------ADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEE 265

Query: 248 -RLPTDMVVVGIGIRPNTS---LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303
             L  D V+V +G RPNT    L    + +E G I++    Q+    +YA+GDV   P  
Sbjct: 266 KTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQ- 324

Query: 304 LLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY 339
                  L HV  A        A  +   K   FDY
Sbjct: 325 -------LAHVAMAEGE---MAAEHIAGKKPRPFDY 350

Length = 472

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 82/313 (26%), Positives = 118/313 (37%), Gaps = 52/313 (16%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           +I+GGG  AG  A  +  R      L +   EP     +    + Y         P F  
Sbjct: 7   IIIGGG-PAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENY---------PGFPG 56

Query: 68  CVGANEERLTPKWYNEH-GIELVLGTRVK-SADVRRKTLVTATGETISYKILIIATGARA 125
            +   E     K   E  G+E+V     K   +     + T  G   + K +IIATGA A
Sbjct: 57  GILGPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEA-KAVIIATGAGA 115

Query: 126 LKL-----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
            KL     EEF   G      C                   G + VVIGGG   +E A  
Sbjct: 116 RKLGVPGEEEFEGKGVSYCATC--------------DGFFKGKDVVVIGGGDSAVEEALY 161

Query: 181 LVINKINVTMVF------PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234
           L      VT+V        E   + RL             K+  ++ +  TV+     D 
Sbjct: 162 LSKIAKKVTLVHRRDEFRAEEILVERLK------------KNVKIEVLTNTVVKEILGDD 209

Query: 235 NGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVY 292
              VV  N++   + LP D V + IG  PNT L +G   L++ G I V   +++S   ++
Sbjct: 210 VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIF 269

Query: 293 AVGDVAAFPLKLL 305
           A GDVA    + +
Sbjct: 270 AAGDVADKNGRQI 282

Length = 305

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 80/317 (25%), Positives = 122/317 (38%), Gaps = 40/317 (12%)

Query: 7   YVIVGGGVAAGYAALEFTKRGV--------PPGELCI----------ISEEPVAPYERPA 48
            VI+G G AA  AA++  + G         P G  C+          +    VA Y R  
Sbjct: 3   LVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP 62

Query: 49  LSKGYLLPEAPARLPSFHTCVGANEERLTPKW---YNEHGIELVLGTRVKSADVRRKTLV 105
              G     A              EE    K+    + +G++ + G          K  V
Sbjct: 63  PFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVK--V 120

Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
               E    K  +IATGAR       GL     +   YL     +   + + +     + 
Sbjct: 121 DLGREVRGAKRFLIATGARPAIPPIPGL-----KEAGYL----TSEEALALDRIPE--SL 169

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
            VIGGG IG+E A +       VT++   +  +     P+I++  EE    +G++ V   
Sbjct: 170 AVIGGGAIGVELAQAFARLGSEVTILQ-RSDRLLPREEPEISAAVEEALAEEGIEVVTSA 228

Query: 226 VLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKV 280
            + +  V   GK++ V    G   +  D ++V  G RPNT        G    E+GGI V
Sbjct: 229 QVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILV 288

Query: 281 TGRLQSSNSSVYAVGDV 297
              L++SN  +YA GDV
Sbjct: 289 DETLRTSNPGIYAAGDV 305

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 74.4 bits (184), Expect = 3e-14
 Identities = 72/237 (30%), Positives = 113/237 (47%), Gaps = 46/237 (19%)

Query: 84  HGIELVLGT-RVKSAD-VRRKTLVTATGETISYKILIIATGARALKLEEFGLSG-----S 136
           + ++++ G  ++   + VR  T      +T + K +I+ATG+R  +L    + G     S
Sbjct: 105 NKVDIIRGEAKLVDPNTVRVMT--EDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTS 162

Query: 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA---ASLVINKINVTMVFP 193
           D           +A  L  V KS      VVIGGGYIG+E A   ASL      VT+V  
Sbjct: 163 D-----------EALNLDEVPKS-----LVVIGGGYIGVEFASAYASL---GAEVTIV-- 201

Query: 194 EAHCMARL---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           EA  + R+      +I+   E   K +G+K   G      +   +G  V V L DG +  
Sbjct: 202 EA--LPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDG--VTVTLEDGGKEE 257

Query: 251 T---DMVVVGIGIRPNTS---LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 301
           T   D V+V +G RPNT    L E  +  ++G I+V  +L+++  ++YA+GD+   P
Sbjct: 258 TLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGP 314

Length = 462

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 72.9 bits (180), Expect = 8e-14
 Identities = 60/232 (25%), Positives = 93/232 (40%), Gaps = 43/232 (18%)

Query: 82  NEHGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN 140
              G+++  G  R +S +      V   GET+  K + I TGARA      GL     + 
Sbjct: 106 GLEGVDVFRGHARFESPNT-----VRVGGETLRAKRIFINTGARAAIPPIPGL-----DE 155

Query: 141 VCYLR-----DLAD-ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194
           V YL       L +    LV            +IGGGYIG+E A         VT++   
Sbjct: 156 VGYLTNETIFSLDELPEHLV------------IIGGGYIGLEFAQMFRRFGSEVTVIERG 203

Query: 195 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDM 253
              + R     +A+   E  + +G+           + D +G  V ++   G   +    
Sbjct: 204 PRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSH 262

Query: 254 VVVGIGIRPNTSLFEGQLTLEK--------GGIKVTGRLQSSNSSVYAVGDV 297
           ++V +G  PNT   +  L LE         G IKV  +L+++N  +YA GD 
Sbjct: 263 ILVAVGRVPNT---DD-LGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 51/230 (22%), Positives = 103/230 (44%), Gaps = 21/230 (9%)

Query: 77  TPKWYNEH-GIELVLGTRVKSADVRRKTLVT---ATGETI--SYKILIIATGARALKLEE 130
           TP+ + +   I +     V + +  R+T+      T E    SY  LI++ GA A  L  
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL-- 120

Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+     A+V+G GYI +E   +L    ++ T+
Sbjct: 121 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTL 176

Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +      + +L    +     +    + + +     + +  ++ N     V  + G    
Sbjct: 177 IHRSDK-INKLMDADMNQPILDELDKREIPYRLNEEIDA--INGN----EVTFKSGKVEH 229

Query: 251 TDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 298
            DM++ G+G  PN+   E   + L +KG I V  + +++  ++YA+GD+ 
Sbjct: 230 YDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDII 279

Length = 438

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 40/269 (14%)

Query: 84  HGIELVLGTRVKSADVRRKTLVTATGE----TISYKILIIATGARALKLEEFGLSGSDAE 139
           + + ++ G     A       V+ TGE    T+  K +IIATG+R        L G    
Sbjct: 102 NKVTVIKGE----AKFLDPGTVSVTGENGEETLEAKNIIIATGSRP-----RSLPGPFDF 152

Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
           +   +     A  L  V +S      V+IGGG IG+E A+        VT++  E   + 
Sbjct: 153 DGKVVITSTGALNLEEVPES-----LVIIGGGVIGVEFASIFASLGSKVTVI--EM--LD 203

Query: 200 RL---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256
           R+      +++   ++  K KGVK +  T +++ + + +         +   L  + V+V
Sbjct: 204 RILPGEDAEVSKVLQKALKKKGVKILTNTKVTAVEKNDDQVTYENKGGETETLTGEKVLV 263

Query: 257 GIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 312
            +G +PNT        G    E+G I V   ++++   +YA+GDV   P+        L 
Sbjct: 264 AVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPM--------LA 315

Query: 313 HVDSARKSAKHAVAAIMEPDKTDKFDYLP 341
           HV  A      A   I    +    DY  
Sbjct: 316 HV--ASHEGIVAAENIAG-KEPAHIDYDA 341

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 70.6 bits (174), Expect = 5e-13
 Identities = 68/245 (27%), Positives = 98/245 (40%), Gaps = 34/245 (13%)

Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
           V   GE I  K ++IATG+R   +    L   D      L    DA  L  + KS     
Sbjct: 122 VEVNGERIEAKNIVIATGSRVPPIPGVWLILGD-----RLLTSDDAFELDKLPKS----- 171

Query: 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVK 223
             VIGGG IG+E   +L    + VT+   E    +  L  P+++   ++   SK  K   
Sbjct: 172 LAVIGGGVIGLELGQALSRLGVKVTVF--ERGDRILPLEDPEVSKQAQKIL-SKEFKIKL 228

Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNT---SLFEGQLTLEKGG-I 278
           G  ++S +   + KV  +        +  D V+V  G RPNT    L    + L++ G  
Sbjct: 229 GAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRP 288

Query: 279 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV--DSARKSAKHAVAAIMEPDKTDK 336
            V    Q+S   +YA GDV   P         L H   D  R +A++A       D    
Sbjct: 289 VVDEHTQTSVPGIYAAGDVNGKPP--------LLHEAADEGRIAAENAAG-----DVAGG 335

Query: 337 FDYLP 341
             Y P
Sbjct: 336 VRYHP 340

Length = 460

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
             VV+GGGYIG+E A++L      VT+V      + R F  +IA   +E  +  G++ + 
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59

Query: 224 GTVLSSFDVDSNGKVVAVNLRDG 246
            T +   + + +G VV +   DG
Sbjct: 60  NTTVEEIEGNGDGVVVKLKTGDG 82

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 63.5 bits (155), Expect = 8e-11
 Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 41/223 (18%)

Query: 108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVV 167
             ET+++   IIATG+    L    LS    ENV    +         ++      + V+
Sbjct: 130 GTETVTFDNAIIATGSSTRLLPGTSLS----ENVVTYEE--------QILSRELPKSIVI 177

Query: 168 IGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---TPKIASYYEEYYKSKGVKFVKG 224
            G G IGME A  L    ++VT+V      + R       +++    + YK  GVK + G
Sbjct: 178 AGAGAIGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKLGVKILTG 233

Query: 225 TVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEG--------QLTLE 274
           T + S D + +   V V+ +DG    L  D V+  IG  P     EG         LT +
Sbjct: 234 TKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV---EGYGLEKTGVALT-D 289

Query: 275 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317
           +G I +   ++++   +YA+GDV A   KL      L HV  A
Sbjct: 290 RGAIAIDDYMRTNVPHIYAIGDVTA---KLQ-----LAHVAEA 324

Length = 466

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 60.6 bits (148), Expect = 6e-10
 Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 37/206 (17%)

Query: 105 VTATGETISYKILIIATGARALKLE----EFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
           V   GE  +   ++IATG R    +    E+G++ SD      L +L          K  
Sbjct: 123 VEVNGERYTADHILIATGGRPSIPDIPGAEYGIT-SDG--FFALEELP---------KR- 169

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
                 V+G GYI +E A   V+N +   T +F       R F P I     E  + KG+
Sbjct: 170 ----VAVVGAGYIAVEFAG--VLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGI 223

Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIK 279
           +     V  + + +++G +  + L DG  L  D ++  IG  PNT      L LE  G+K
Sbjct: 224 RLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTD----GLGLENAGVK 278

Query: 280 VTGR--------LQSSNSSVYAVGDV 297
           +  +          ++   +YAVGDV
Sbjct: 279 LNEKGYIIVDEYQNTNVPGIYAVGDV 304

Length = 450

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 60.6 bits (148), Expect = 7e-10
 Identities = 60/257 (23%), Positives = 83/257 (32%), Gaps = 76/257 (29%)

Query: 85  GIELVLGTRVKSADVRRKTLVTATGETIS-------YKILIIATGA---RALKLEEFGLS 134
           G+E+   T V              G  I+       Y  + I TGA   R L +      
Sbjct: 204 GVEIRTNTEV--------------GRDITLDELRAGYDAVFIGTGAGLPRFLGIP----- 244

Query: 135 GSDAENVCYLRDLADAN---RLVNVMKSCS----GGNAVVIGGGYIGMECAASLVINKI- 186
           G +   V        A      VN   +      G   VVIGGG   M+ A +       
Sbjct: 245 GENLGGVY------SAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAE 298

Query: 187 NVTMVF--PEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGK--VVAV 241
           +VT+V+       M        AS  E E+ K +GV+F           D      V  V
Sbjct: 299 SVTIVYRRGREE-MP-------ASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFV 350

Query: 242 NLRDGNR----------------LPTDMVVVGIGIRPNTSLFEGQLTLE---KGGIKVT- 281
            +  G                  LP D+V+  IG  PN  +      LE    G I    
Sbjct: 351 RMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADD 410

Query: 282 GRLQSSNSSVYAVGDVA 298
              ++S   V+A GD+ 
Sbjct: 411 ETGRTSLPGVFAGGDIV 427

Length = 457

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 46/263 (17%)

Query: 99  VRRKTLVTATGETISYKILIIATGARAL---KLEEFGLSGSDAENVCYLRDLADANRLVN 155
           V  +TL T  GE I+   ++IA G+R      + + G+     E++  L +L +      
Sbjct: 117 VGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPE------ 170

Query: 156 VMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK 215
                   + V++GGGYI  E A         VT+V   +  + R     I+  + E  K
Sbjct: 171 --------SLVIVGGGYIAAEFAHVFSALGTRVTIVN-RSTKLLRHLDEDISDRFTEIAK 221

Query: 216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEK 275
            K      G  +++ + D +G  V + L DG+ +  D+++V  G  PN       L  E 
Sbjct: 222 KK-WDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGD----LLDAEA 274

Query: 276 GGIKVT--GRL------QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA-KHAVA 326
            G++V   GR+      ++S   V+A+GDV++ P +       L+HV +A     KH + 
Sbjct: 275 AGVEVDEDGRIKVDEYGRTSARGVWALGDVSS-PYQ-------LKHVANAEARVVKHNLL 326

Query: 327 AIMEPDKTDKFDYLPFFYSRVFT 349
               P+   K  +  F  S VFT
Sbjct: 327 ---HPNDLRKMPH-DFVPSAVFT 345

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 27/201 (13%)

Query: 105 VTATGETISYKILIIATGARALKLE----EFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
           V A+G+T + + ++IA G R  K      E G++ ++A +            L  + KS 
Sbjct: 122 VLASGKTYTAEKILIAVGGRPPKPALPGHELGITSNEAFH------------LPTLPKS- 168

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220
                ++ GGGYI +E A       +  T+++     +   F   +        + +G++
Sbjct: 169 ----ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIR 223

Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF----EGQLTLEKG 276
            +    ++S   D +G++ A  L     +  D+V+   G  PNT+       G    + G
Sbjct: 224 ILPEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLG 282

Query: 277 GIKVTGRLQSSNSSVYAVGDV 297
            I V    ++S  S+YAVGDV
Sbjct: 283 AIAVDEYSRTSTPSIYAVGDV 303

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 43/234 (18%)

Query: 90  LGTRVKSADVRR-------KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
            G  +   +V +         + T  G+  + K +IIATGA A KL   G+ G D     
Sbjct: 69  FGAEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKL---GIPGEDE---- 121

Query: 143 YLRDLADANRLVNVMKSCSGG-----NAVVIGGGYIGMECAASLVINKI--NVTMVFPEA 195
           +        R V+   +C G         V+GGG   +E A  L + +I   VT+V    
Sbjct: 122 FW------GRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEA--LYLTRIAKKVTLV---- 169

Query: 196 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-----LP 250
           H   +    KI    +   K+  ++F+  + +   ++  + KV  V +++        L 
Sbjct: 170 HRRDKFRAEKI--LLDRLKKNPKIEFLWNSTVK--EIVGDNKVEGVKIKNTVTGEEEELE 225

Query: 251 TDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLK 303
            D V + IG  PNT L +G L L++ G I     +++S   V+A GDV     +
Sbjct: 226 VDGVFIAIGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDVRDKGYR 279

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 36/216 (16%)

Query: 101 RKTLVTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVNVM 157
            KTL T  GE I+   ++IA G+R +       SG     ++ +  L +L          
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELP--------- 166

Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217
                 + V++GGG+I  E A       + VT+V   +  + R     I+  + E    +
Sbjct: 167 -----ESLVIVGGGFIAAEFAHVFSALGVRVTVV-NRSGRLLRHLDDDISERFTELASKR 220

Query: 218 -GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG 276
             V+  +  V     V  +G  V + L DG+ +  D+++V  G  PN       L     
Sbjct: 221 WDVRLGRNVV----GVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD----LLDAAAA 272

Query: 277 GIKVT--GRL------QSSNSSVYAVGDVAA-FPLK 303
           G+ V   GR+      ++S   V+A+GDV++ + LK
Sbjct: 273 GVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLK 308

Length = 451

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 23/194 (11%)

Query: 108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVV 167
           T ETI     +I TGA +  L   GL+  D+++V       D+  + ++          +
Sbjct: 118 TAETI-----VINTGAVSNVLPIPGLA--DSKHV------YDSTGIQSLETLPE--RLGI 162

Query: 168 IGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVL 227
           IGGG IG+E  A L     +   V   A  +     P +A+  ++Y +  G+ F+     
Sbjct: 163 IGGGNIGLE-FAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT 221

Query: 228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLT----LEKGGIKVTGR 283
           +    D +  +V            D ++   G +PNT     + T     E+G IKV   
Sbjct: 222 TEVKNDGDQVLVVTE---DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY 278

Query: 284 LQSSNSSVYAVGDV 297
            Q+S   V+AVGDV
Sbjct: 279 CQTSVPGVFAVGDV 292

Length = 438

>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 60/238 (25%), Positives = 101/238 (42%), Gaps = 42/238 (17%)

Query: 93  RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA-- 150
           RVK   V +         ++ Y  L++A GAR      F + G + E   +L+++  A  
Sbjct: 93  RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP---NTFNIPGVE-ERAFFLKEVNHARG 148

Query: 151 --NRLVNVMKSCSGGNA-----------VVIGGGYIGMECAASLV-INKINVTMVFPE-- 194
              R+V  ++  S               VV+GGG  G+E AA L    + +V  + PE  
Sbjct: 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELV 208

Query: 195 AHCMARLF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGN 247
             C   +     ++   +++  +  G + ++       D+ +   V  V      L+DG 
Sbjct: 209 EECKVTVLEAGSEVLGSFDQALRKYGQRRLRR---LGVDIRTKTAVKEVLDKEVVLKDGE 265

Query: 248 RLPTDMVV--VGIGIRPNTSLFEGQLTLEK---GGIKVTGRLQSSN-SSVYAVGDVAA 299
            +PT +VV   G+G  P T     QL ++K   G I V   L+     +V+A+GD AA
Sbjct: 266 VIPTGLVVWSTGVGPGPLTK----QLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAA 319

Length = 424

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 47/245 (19%)

Query: 69  VGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL 128
           V   E+++  K+ N +  E V   R+K+ + + K       +  S +  +IATG R    
Sbjct: 108 VALREKKV--KYENAYA-EFVDKHRIKATNKKGKE------KIYSAERFLIATGERPRYP 158

Query: 129 -----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI 183
                +E  ++  D                +  +  C G   +V+G  Y+ +ECA  L  
Sbjct: 159 GIPGAKELCITSDD----------------LFSLPYCPG-KTLVVGASYVALECAGFLAG 201

Query: 184 NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD-VDSNGKVVAVN 242
             ++VT++      + R F    A+   E+ +  GVKF +  V    + +++   V   +
Sbjct: 202 IGLDVTVMVRS--ILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVEFTD 259

Query: 243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV---TGRL------QSSNSSVYA 293
             +G     D V++ IG    T     +L LE  G+K+   TG++      Q++   +YA
Sbjct: 260 STNGIEEEYDTVLLAIGRDACTR----KLNLENVGVKINKKTGKIPADEEEQTNVPYIYA 315

Query: 294 VGDVA 298
           VGD+ 
Sbjct: 316 VGDIL 320

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 54/211 (25%), Positives = 79/211 (37%), Gaps = 36/211 (17%)

Query: 107 ATGETISYKILIIATG--ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
                I+ K +IIATG   R L    F     D + +    D   A     V K      
Sbjct: 139 EDETVITAKHVIIATGSEPRHLPGVPF-----DNKIIL---DNTGALNFTEVPKKL---- 186

Query: 165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT---PKIASYYEEYYKSKGVKF 221
             VIG G IG+E  +  V  ++   +   EA  +         ++A    + +  +G+  
Sbjct: 187 -AVIGAGVIGLELGS--VWRRLGAEVTILEA--LPAFLAAADEQVAKEAAKAFTKQGLDI 241

Query: 222 VKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-- 277
             G  +        G  VA    DG    L  D ++V IG  PNT      L LE  G  
Sbjct: 242 HLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT----DGLGLEAVGLK 297

Query: 278 ------IKVTGRLQSSNSSVYAVGDVAAFPL 302
                 I V    +++  +VYA+GDV   P+
Sbjct: 298 LDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328

Length = 475

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 26/230 (11%)

Query: 85  GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYL 144
           G   V+       D  R+ ++ A    +SY +L +  G+        G     A+    +
Sbjct: 68  GARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG----AADLAVPV 122

Query: 145 RDLADANRLVNVMK-----SCSGGNAVVIGGGYIGMECAASLVIN------KINVTMVFP 193
           + + +       +              V+GGG  G+E A +L         +  VT+   
Sbjct: 123 KPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL-IA 181

Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
            A  +   F  K+          +G++  +G  ++       G   A+ L DG  LP D 
Sbjct: 182 GASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTR------GPDGALILADGRTLPADA 234

Query: 254 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFP 301
           ++   G R    L E  L L E G ++V   LQS S+  V+A GD A   
Sbjct: 235 ILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 51.7 bits (125), Expect = 5e-07
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           ++ G G IG E A+      + VT++      ++ L   +I+     + +  GV      
Sbjct: 179 IIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFL-DDEISDALSYHLRDSGVTIRHNE 237

Query: 226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE--------KGG 277
            +   +   +G +V  +L+ G ++  D ++   G   NT      L LE        +G 
Sbjct: 238 EVEKVEGGDDGVIV--HLKSGKKIKADCLLYANGRTGNTD----GLNLENAGLEADSRGQ 291

Query: 278 IKVTGRLQSSNSSVYAVGDVAAFP 301
           +KV    Q++   +YAVGDV  FP
Sbjct: 292 LKVNENYQTAVPHIYAVGDVIGFP 315

Length = 461

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 58/246 (23%), Positives = 95/246 (38%), Gaps = 41/246 (16%)

Query: 105 VTATGETISYKILIIATGARALKLEEF-GLS-GSDAENVCYLRDLADANRLVNVMKSCSG 162
           V   G   +   ++IATG +    E   G   G+D++    L +L               
Sbjct: 121 VEVNGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGFFALEELP-------------- 166

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
              V++G GYI +E A  L        +V      + R F   I+    E Y+ +G+   
Sbjct: 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVH 225

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKVT 281
           K +     +    GK+V ++  DG  +   D ++  IG +PNT      L LE  GIK+ 
Sbjct: 226 KLSKPVKVEKTVEGKLV-IHFEDGKSIDDVDELIWAIGRKPNTK----GLGLENVGIKLN 280

Query: 282 GR-------LQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
            +        Q++N   +YA+GDV            ++E    A  + +     +     
Sbjct: 281 EKGQIIVDEYQNTNVPGIYALGDV----------VGKVELTPVAIAAGRKLSERLFNGKT 330

Query: 334 TDKFDY 339
            DK DY
Sbjct: 331 DDKLDY 336

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 50.9 bits (122), Expect = 8e-07
 Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 40/232 (17%)

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLSGSDAE 139
            ++ I+++ G    S +   +  V      E +  +  IIA G+   +L      G    
Sbjct: 101 KKNKIKVIQGK--ASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGK--- 155

Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
              ++ +   A  L ++  S      +++GGG IG E A+        VT+V      MA
Sbjct: 156 ---WIINSKHAMSLPSIPSSL-----LIVGGGVIGCEFASIYSRLGTKVTIVE-----MA 202

Query: 200 RLFTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDM 253
               P     IA    E  ++ GVK   G  L   +   + K  A+   +G+   +  + 
Sbjct: 203 PQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN---SYKKQALFEYEGSIQEVNAEF 259

Query: 254 VVVGIGIRPNTSLFEGQLTLEKGG-------IKVTGRLQSSNSSVYAVGDVA 298
           V+V +G +P       QL LEK G       I V   +Q++   +YA GDV 
Sbjct: 260 VLVSVGRKPRVQ----QLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVI 307

Length = 458

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 80/329 (24%), Positives = 113/329 (34%), Gaps = 71/329 (21%)

Query: 9   IVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA-RLPSFHT 67
           ++G G A   AA + ++ G             V  +ER AL  G LL   P  +LP    
Sbjct: 128 VIGAGPAGLAAADDLSRAGHD-----------VTVFERVALDGGLLLYGIPDFKLP---K 173

Query: 68  CVGANE-ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA--- 123
            +     E L        G+E  L  RV     R  TL     E   Y  + +ATGA   
Sbjct: 174 DILDRRLELLE-----RSGVEFKLNVRV----GRDITLEELLKE---YDAVFLATGAGKP 221

Query: 124 RALKLEEFGLSGSDA------ENVC-YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGME 176
           R L +      G               L D A+        K   G   VVIGGG   M+
Sbjct: 222 RPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDR--TPPAK---GKRVVVIGGGDTAMD 276

Query: 177 CAA-SLVINKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDS 234
           CA  +L +   +VT  + E         P  A+  E      +GV+ +      +F  + 
Sbjct: 277 CAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336

Query: 235 NGKVVAVNL-------------RDGN--------RLPTDMVVVGIGIRPNTSLF----EG 269
            G+V  V               R G             D V++ IG   + +       G
Sbjct: 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFG 396

Query: 270 QLTLEKGGIKV-TGRLQSSNSSVYAVGDV 297
               ++G IKV     Q+S   V+A GD 
Sbjct: 397 LKLDKRGRIKVDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 41/209 (19%)

Query: 114 YKILIIATGARA---LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
           Y  +++A GA     LKLE    +   A  + +L +  +    + +     G + VV+GG
Sbjct: 624 YDYVVVAIGADKNGGLKLEGGNQNVIKA--LPFLEEYKNKGTALKL-----GKHVVVVGG 676

Query: 171 GYIGMECA-ASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYK--SKGVKFVKGTV 226
           G   M+ A A+L +  +  VT+V+       +   P   ++ EEY +    GV+F +  +
Sbjct: 677 GNTAMDAARAALRVPGVEKVTVVYRRT----KQEMP---AWREEYEEALEDGVEFKE--L 727

Query: 227 LSSFDVDSNGKVVAVNLRDGNR----------------LPTDMVVVGIGIRPNTSLFE-- 268
           L+    D++G +    ++ G                  L  D V+  IG + +T L +  
Sbjct: 728 LNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKAN 787

Query: 269 GQLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
           G    +KG   V    ++S ++VY +GDV
Sbjct: 788 GIPLDKKGWPVVDANGETSLTNVYMIGDV 816

Length = 1019

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 34/265 (12%)

Query: 45  ERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW---YNEHGIELVLGTRVKSADVRR 101
           + P + +  LL +  AR+          EE    K+     E+    VL    +  D R 
Sbjct: 77  QAPVVDRSALLAQQQARV----------EELRESKYQSILRENAAITVLNGEARFVDERT 126

Query: 102 KTLVTATG--ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159
            T+    G  +T+ +    I TGAR  +    GL+ +      YL   + A  L ++ + 
Sbjct: 127 LTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETP-----YLTSTS-ALELDHIPER 180

Query: 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
                 +VIG   + +E A +       VT V   +  +++   P +    E  ++ +G+
Sbjct: 181 L-----LVIGASVVALELAQAFARLGSRVT-VLARSRVLSQE-DPAVGEAIEAAFRREGI 233

Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKG 276
           + +K T  S  D +    ++  N      L  + ++V  G  PNT     +   +  E+G
Sbjct: 234 EVLKQTQASEVDYNGREFILETN---AGTLRAEQLLVATGRTPNTENLNLESIGVETERG 290

Query: 277 GIKVTGRLQSSNSSVYAVGDVAAFP 301
            I++   LQ++ S +YA GD    P
Sbjct: 291 AIRIDEHLQTTVSGIYAAGDCTDQP 315

Length = 468

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 37/237 (15%)

Query: 82  NEHGIELVLGTRVKS--ADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE 139
            ++ I+L+   R K    +     +   +GE +  K +I+ATGAR  KL   G+ G + E
Sbjct: 278 KQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKL---GVPG-EKE 333

Query: 140 NVCYLRDLADANRLVNVMKSCSG----GNAV-VIGGGYIGMECAASL--VINKINVTMVF 192
            +          + V     C G    G  V VIGGG  G+E A  L  ++  + V    
Sbjct: 334 YI---------GKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384

Query: 193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN----- 247
            E          K     ++  KS     +  +  ++  V    KV  +  +D N     
Sbjct: 385 DEL---------KADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEK 435

Query: 248 RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303
           +L  D V V IG+ PNT   +  + L  +G I +  R ++S   ++A GDV   P K
Sbjct: 436 QLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 59/246 (23%), Positives = 92/246 (37%), Gaps = 58/246 (23%)

Query: 114 YKILIIATGA---RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS----------C 160
           Y  + I TGA   + + +    L G  + N    R         N+MK+           
Sbjct: 219 YDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTR--------ANLMKAYEFPHADTPVY 270

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE--YYKSKG 218
           +G + VVIGGG   ++ A +    ++       E HC+ R     + +  EE  + + +G
Sbjct: 271 AGKSVVVIGGGNTAVDSART--ALRLGA-----EVHCLYRRTREDMTARVEEIAHAEEEG 323

Query: 219 VKFVKGTVLSSFDVDSNGKVVAVNLRD---------GNRLP-----------TDMVVVGI 258
           VKF           D  G V AV  R          G R              D V+V I
Sbjct: 324 VKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAI 383

Query: 259 GIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 316
           G   N  + E     T E+G I V    ++S   V+A GD+      +LG    +  +  
Sbjct: 384 GNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI------ILGAATVIRAMGQ 437

Query: 317 ARKSAK 322
            +++AK
Sbjct: 438 GKRAAK 443

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 20/193 (10%)

Query: 110 ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIG 169
           ETI+ K ++IATG R           S  E+V   ++ +  +  +  +     G  +++G
Sbjct: 141 ETITAKYILIATGGRP----------SIPEDVPGAKEYSITSDDIFSLSK-DPGKTLIVG 189

Query: 170 GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS 229
             YIG+E A  L  N++   +         R F  + +    EY K +G  F++G V  +
Sbjct: 190 ASYIGLETAGFL--NELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPIN 247

Query: 230 FD-VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKGGIKVTGRLQ 285
            + +D     + V   DG     D V+   G +P+    +L    + + K    +     
Sbjct: 248 IEKMDDK---IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDC 304

Query: 286 SSNSSVYAVGDVA 298
           ++  +++AVGDV 
Sbjct: 305 TNIPNIFAVGDVV 317

Length = 499

>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 67/242 (27%), Positives = 98/242 (40%), Gaps = 49/242 (20%)

Query: 82  NEHGIEL---VLGTRVKSADVRRKTLVTATGETISYKI--LIIATGARALKLEEFGLSGS 136
           +EH  +    ++   +   D++ +     TG++  Y    LIIATGA A  L   GL   
Sbjct: 70  HEHATKFETEIIFDHINKVDLQNRPF-RLTGDSGEYTCDALIIATGASARYL---GLPSE 125

Query: 137 DAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGGYIGMECAASLVINKINVTMV 191
           +A             R V+   +C G         VIGGG   +E A  L      V ++
Sbjct: 126 EAFK----------GRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLI 175

Query: 192 -----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 246
                F     + +    K+ +     + ++ ++ V G        D  G V  V LRD 
Sbjct: 176 HRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG--------DQMG-VTGVRLRDT 226

Query: 247 NR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QSSNSSVYAVG 295
                   L    + V IG  PNT++FEGQL LE G IKV   +     Q+S   V+A G
Sbjct: 227 QNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG 286

Query: 296 DV 297
           DV
Sbjct: 287 DV 288

Length = 321

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 71/271 (26%), Positives = 107/271 (39%), Gaps = 62/271 (22%)

Query: 70  GANEERLTPKWYNEHGIELV--LGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
           G  E RL PK   +  IE +  LG + ++  +  KT+     E   +K + IA+GA    
Sbjct: 473 GIPEFRL-PKKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGFKGIFIASGA---G 528

Query: 128 LEEF-GLSGSDAENVCYLRDLADANRL---VNVMKSCS---------GGNAVVIGGGYIG 174
           L  F  + G ++  V        +N     VN+M + S         G    V+GGG   
Sbjct: 529 LPNFMNIPGENSNGV------MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTA 582

Query: 175 ME-CAASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYY--KSKGVKFVKGTVLSS 229
           M+    +  +    VT+V+   E    ARL         EE    K +G++F+       
Sbjct: 583 MDSARTAKRLGAERVTIVYRRSEEEMPARL---------EEVKHAKEEGIEFLTLHNPIE 633

Query: 230 FDVDSNGKVVAVNLR---------DGNR-----------LPTDMVVVGIGIRPN---TSL 266
           +  D  G V  V L+          G R           +  D+V+V +G+ PN    S 
Sbjct: 634 YLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSS 693

Query: 267 FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
             G     KG I V   +QSS   +YA GD+
Sbjct: 694 IPGLELNRKGTIVVDEEMQSSIPGIYAGGDI 724

Length = 752

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 65/288 (22%), Positives = 113/288 (39%), Gaps = 55/288 (19%)

Query: 83  EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA---RALKLEEFGLSGSDAE 139
           +  IELV    V+        L  A  +   YK +I+A GA     L+LE  G     + 
Sbjct: 591 QKDIELVKFHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKS- 649

Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA-ASLVINKI-NVTMVFPEAHC 197
            + +LR   +   +  +     G + VV+GGG   M+ A A+L +  +  VT+V+     
Sbjct: 650 -LEFLRAFKEGPTINPL-----GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVY----- 698

Query: 198 MARLFTPKIASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR------- 248
             R     + +  EE  ++   GV F +     SF+   +G +    ++ G         
Sbjct: 699 --RRTKRYMPASREELEEALEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRR 753

Query: 249 ---------LPTDMVVVGIGIRPNTSLFE--GQLTLEKGGIKV-TGRLQSSNSSVYAVGD 296
                    LP D V+  +G + +T L +  G    E G   V     +++ ++V+ +GD
Sbjct: 754 PVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGD 813

Query: 297 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPF 342
                    G    +E +   RK+A     AI+  +   +D     P 
Sbjct: 814 A------NRGPATIVEAIADGRKAAN----AILSREGLNSDVDKVFPI 851

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 54/227 (23%), Positives = 81/227 (35%), Gaps = 57/227 (25%)

Query: 110 ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRL---VNVMKS------- 159
           E   +  + I +GA   K    G+ G +   V        AN     VN+MK+       
Sbjct: 225 EEEGFDAVFIGSGAGLPKF--MGIPGENLNGVF------SANEFLTRVNLMKAYKPEYDT 276

Query: 160 --CSGGNAVVIGGGYIGMECAASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYY- 214
               G    V+GGG + M+ A + +     V +V+   E    AR+         EE + 
Sbjct: 277 PIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV---------EEVHH 327

Query: 215 -KSKGVKFVKGTVLSSFDVDSNGKVVAVNL---------RDGNR-----------LPTDM 253
            K +GV F   T       D NG V  +             G R           L  D 
Sbjct: 328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDT 387

Query: 254 VVVGIGIRPN---TSLFEGQLTLEKGGIKVTGR-LQSSNSSVYAVGD 296
           V++ +G  PN   +S  +G    ++G I        +S   V+A GD
Sbjct: 388 VIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGD 434

Length = 464

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 32/200 (16%)

Query: 109 GETISY--KILIIATGARALKL----EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
           G  + Y  K ++IATG+RA +     +E  ++  +A +   L +L               
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPNIPGKELAITSDEALS---LEELPK------------- 204

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHCMARLFTPKIASYYEEYYKSKGVKF 221
             AVV+GGGYI +E A+  +   +  T+ +F       R F  ++ +      + +G+  
Sbjct: 205 -RAVVLGGGYIAVEFAS--IWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINL 261

Query: 222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---LFEGQLTLEK-GG 277
              T L+       G  + V    G     D+V+   G  PNT    L    + L+K G 
Sbjct: 262 HPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGA 319

Query: 278 IKVTGRLQSSNSSVYAVGDV 297
           +KV    +++  S++A+GDV
Sbjct: 320 VKVDEYSRTNIPSIWAIGDV 339

Length = 499

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 74/263 (28%)

Query: 85  GIELVLGTRVKS----ADVRRKTLVTATGETISYKILIIATG---ARALKLEEFGLSGSD 137
           G+++ L TRV       ++R K           +  + ++TG    R+ ++      G+D
Sbjct: 347 GVKIHLNTRVGKDIPLEELREK-----------HDAVFLSTGFTLGRSTRIP-----GTD 390

Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNA---------VVIGGGYIGMECAASLV------ 182
             +V        A  L+  ++    G           VVIGGG + M+ A S+       
Sbjct: 391 HPDV------IQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKME 444

Query: 183 INKINVTMVFPEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241
             ++NV +       + R F    A   E E    +GV    G       ++ N KV  V
Sbjct: 445 YGEVNVKVT-----SLERTFEEMPADMEEIEEGLEEGVVIYPGWGPMEVVIE-NDKVKGV 498

Query: 242 NLR------DGNR-------------LPTDMVVVGIGIRPNTSLF----EGQLTLEKGGI 278
             +      D                +  DMVV  IG  P+ S      + +L   +G I
Sbjct: 499 KFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRI 558

Query: 279 KVTGRLQSSNSSVYAVGDVAAFP 301
                 Q+S   ++A GD+   P
Sbjct: 559 LTNEYGQTSIPWLFAGGDIVHGP 581

Length = 604

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 63/260 (24%), Positives = 91/260 (35%), Gaps = 76/260 (29%)

Query: 85  GIELVLGTRVKSADVRRKTL-------VTATGETISYKILIIATGARALKLEEFGLSGSD 137
           GIE      V   D+  + L          TG          A   R L +      G D
Sbjct: 207 GIEFRTNVEV-GKDITAEELLAEYDAVFLGTG----------AYKPRDLGIP-----GRD 250

Query: 138 AENVCYLRD-LADANRLVNVMK-----SCSGGNAVVIGGGYIGMEC--------AASLV- 182
            + V +  D L    R V   +     S  G + VVIGGG  GM+C        A S+  
Sbjct: 251 LDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQ 310

Query: 183 --INKI-----NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235
             I  +     N    +P            +++ +EE     GV+         F+ + N
Sbjct: 311 RDIMPMPPSRRNKNNPWPYWPMKLE-----VSNAHEE-----GVEREFNVQTKEFEGE-N 359

Query: 236 GKVVAVN-----LRDGNR---------LPTDMVVVGIGIR-PNTSLFEGQLTLEK---GG 277
           GKV  V      L +G+          LP D+V++ +G   P   L   Q  +E    G 
Sbjct: 360 GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGR 418

Query: 278 IKV-TGRLQSSNSSVYAVGD 296
           +       Q+SN  V+A GD
Sbjct: 419 VAAPDNAYQTSNPKVFAAGD 438

Length = 471

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 166 VVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
            + G GYI +E     V+N++   + +F   + + R F   I +  E   K   +  +  
Sbjct: 241 GIAGSGYIAVELIN--VVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITH 298

Query: 225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVT 281
             +   +      +             D V+  +G  PNT     +   +   KG IKV 
Sbjct: 299 ANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVD 358

Query: 282 GRLQSSNSSVYAVGD 296
              ++S   +YAVGD
Sbjct: 359 DNQRTSVKHIYAVGD 373

Length = 561

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 55/212 (25%), Positives = 82/212 (38%), Gaps = 37/212 (17%)

Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG--- 162
            A G  +  + +I+ATGAR   +   G      + V Y                C G   
Sbjct: 306 LANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYC-------------PHCDGPLF 352

Query: 163 -GNAV-VIGGGYIGMECAASL--VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218
            G  V VIGGG  G+E A  L  ++  + +    PE    A L         ++      
Sbjct: 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVL--------QDKLRSLPN 404

Query: 219 VKFVKGTVLSSFDVDSNG-KVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLT 272
           V  +     +  +V  +G KV  +  RD        L  + V V IG+ PNT   +G + 
Sbjct: 405 VTIITNAQTT--EVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVE 462

Query: 273 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303
           L  +G I V  R +++   V+A GD    P K
Sbjct: 463 LNRRGEIIVDARGETNVPGVFAAGDCTTVPYK 494

Length = 520

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)

Query: 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK----IASYYEEYYKSKGVKFV 222
           ++GGGYIG+E A+        VT++  EA   A LF P+    IA       + +GV  +
Sbjct: 163 ILGGGYIGVEFASMFANFGSKVTIL--EA---ASLFLPREDRDIADNIATILRDQGVDII 217

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTLEKGGI 278
               +    +  +   V V+         D +++  G +P T+       G    E+G I
Sbjct: 218 LNAHVER--ISHHENQVQVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274

Query: 279 KVTGRLQSSNSSVYAVGDV 297
            V   L ++  +++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293

Length = 441

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 57/223 (25%), Positives = 83/223 (37%), Gaps = 59/223 (26%)

Query: 102 KTLVTATGETISYKILIIATGARALKL-----EEFGLSGSDAENVCYLRDLADANRLVNV 156
           KT+ TA G+  +  + +IATGA   KL     EEF                    R V  
Sbjct: 92  KTIKTARGDYKTLAV-LIATGASPRKLGFPGEEEF------------------TGRGVAY 132

Query: 157 MKSCSG----GNAV-VIGGGYIGMECAASLVINKINVTMVF--PEAHCMAR-----LFTP 204
             +C G    G  V VIGGG+   E A  L      VT++   P+  C           P
Sbjct: 133 CATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHP 192

Query: 205 KIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM--------VV 255
           KI   +  E  ++ G   ++                 VN   G               V 
Sbjct: 193 KIEVKFNTELKEATGDDGLR-------------YAKFVNNVTGEITEYKAPKDAGTFGVF 239

Query: 256 VGIGIRPNTSLFEGQLTLEKGGIKVTGR-LQSSNSSVYAVGDV 297
           V +G  P++ LF+G + L+K G   T   ++++   VYA GD+
Sbjct: 240 VFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 53/230 (23%), Positives = 81/230 (35%), Gaps = 64/230 (27%)

Query: 85  GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA---RALKLEEFGLSGSDAEN- 140
           G+E+ LG RV   D+   TL    GE   +  + +A GA   + L +      G DA   
Sbjct: 201 GVEVRLGVRVGE-DI---TLEQLEGE---FDAVFVAIGAQLGKRLPIP-----GEDAAGV 248

Query: 141 ---VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA-------ASLVINKINVTM 190
              V +LR + +            G   VVIGGG   M+ A       A  V     +  
Sbjct: 249 LDAVDFLRAVGEGE------PPFLGKRVVVIGGGNTAMDAARTARRLGAEEVT----IVY 298

Query: 191 VFPEAHCMARLFTPKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNG-------KVVAVN 242
                  M        A   E E    +GV+          + D NG        V  + 
Sbjct: 299 RRTRED-MP-------AHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKME 350

Query: 243 LRDGNR----------LPTDMVVVGIGIRPNTSLFEGQ--LTLEKGGIKV 280
           L +  R          L  D+VV+ IG   +++  E    + + +G ++V
Sbjct: 351 LDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQV 400

Length = 564

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK06370	463	mercuric reductase; Validated	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PLN02507	499	glutathione reductase	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.98
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.98
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.98
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.97
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.97
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.97
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	99.96
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.96
PRK13984	604	putative oxidoreductase; Provisional	99.96
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	99.96
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.96
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	99.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
PLN02852	491	ferredoxin-NADP+ reductase	99.95
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.95
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.95
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.94
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.92
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.88
KOG2755	334	consensus Oxidoreductase [General function predict	99.86
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.84
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.75
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.72
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.71
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.71
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.7
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.67
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.64
PTZ00188	506	adrenodoxin reductase; Provisional	99.62
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.61
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.61
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.51
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.27
COG2081	408	Predicted flavoproteins [General function predicti	99.21
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.18
PRK09897	534	hypothetical protein; Provisional	99.18
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.09
PRK08401	466	L-aspartate oxidase; Provisional	99.07
PRK07804	541	L-aspartate oxidase; Provisional	99.06
PLN02463	447	lycopene beta cyclase	99.06
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.05
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	99.03
PRK08071	510	L-aspartate oxidase; Provisional	98.98
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.96
PRK08275	554	putative oxidoreductase; Provisional	98.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.92
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.9
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.87
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.86
PRK06847	375	hypothetical protein; Provisional	98.86
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.85
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.84
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.84
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.84
COG0579	429	Predicted dehydrogenase [General function predicti	98.83
PRK10157	428	putative oxidoreductase FixC; Provisional	98.82
PRK09077	536	L-aspartate oxidase; Provisional	98.82
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.81
PRK07512	513	L-aspartate oxidase; Provisional	98.8
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.79
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.79
PRK07395	553	L-aspartate oxidase; Provisional	98.79
PRK06834	488	hypothetical protein; Provisional	98.78
PLN02815	594	L-aspartate oxidase	98.76
PRK10015	429	oxidoreductase; Provisional	98.75
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.73
PRK06184	502	hypothetical protein; Provisional	98.73
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.72
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.72
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.71
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.71
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.7
PRK07190	487	hypothetical protein; Provisional	98.69
PRK09126	392	hypothetical protein; Provisional	98.66
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.66
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.65
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	98.64
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.61
PRK08244	493	hypothetical protein; Provisional	98.61
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.6
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.6
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.6
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.6
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.6
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.57
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.56
PRK08013	400	oxidoreductase; Provisional	98.55
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.54
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.53
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.52
PRK08274	466	tricarballylate dehydrogenase; Validated	98.51
PRK08163	396	salicylate hydroxylase; Provisional	98.5
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.5
PRK07045	388	putative monooxygenase; Reviewed	98.5
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.49
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.49
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.48
PRK06185	407	hypothetical protein; Provisional	98.47
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.47
PLN02697	529	lycopene epsilon cyclase	98.46
PRK07236	386	hypothetical protein; Provisional	98.46
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.46
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.44
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.43
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.43
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.43
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.42
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.42
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.42
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.42
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.4
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.39
PRK11445	351	putative oxidoreductase; Provisional	98.39
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.39
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.38
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.38
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.37
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.37
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.37
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.37
PRK06126	545	hypothetical protein; Provisional	98.36
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.36
PRK07588	391	hypothetical protein; Provisional	98.36
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.36
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.35
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.35
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.35
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.35
PRK06175	433	L-aspartate oxidase; Provisional	98.35
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.34
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.34
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.34
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.33
PLN02612	567	phytoene desaturase	98.33
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.32
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.32
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.31
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.31
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.31
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.31
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.31
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.3
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.3
PRK05868	372	hypothetical protein; Validated	98.3
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.29
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.27
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.27
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.27
PRK07233	434	hypothetical protein; Provisional	98.26
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.26
PRK06753	373	hypothetical protein; Provisional	98.26
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.26
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.25
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.25
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.25
PRK14694	468	putative mercuric reductase; Provisional	98.24
PRK06847	375	hypothetical protein; Provisional	98.23
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.23
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.23
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.21
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.21
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.2
PLN02661	357	Putative thiazole synthesis	98.2
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.2
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.2
PRK06116	450	glutathione reductase; Validated	98.2
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.2
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.19
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.19
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.19
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.18
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.17
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.16
PRK06996	398	hypothetical protein; Provisional	98.15
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.15
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.14
PRK07538	413	hypothetical protein; Provisional	98.14
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.14
PRK08294	634	phenol 2-monooxygenase; Provisional	98.13
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.13
TIGR02053	463	MerA mercuric reductase. This model represents the	98.13
PRK06370	463	mercuric reductase; Validated	98.13
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.12
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.12
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.11
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.11
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.1
PRK07846	451	mycothione reductase; Reviewed	98.1
PRK07121	492	hypothetical protein; Validated	98.09
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.09
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.09
PRK07236	386	hypothetical protein; Provisional	98.09
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.09
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.09
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.08
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.08
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.08
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.07
PRK10262	321	thioredoxin reductase; Provisional	98.07
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.06
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.06
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.06
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.05
PRK06475	400	salicylate hydroxylase; Provisional	98.04
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.04
PLN02507	499	glutathione reductase	98.04
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.03
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.03
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.02
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.02
PTZ00052	499	thioredoxin reductase; Provisional	98.02
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.02
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.01
PLN02487	569	zeta-carotene desaturase	98.01
PRK13748	561	putative mercuric reductase; Provisional	98.0
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.0
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.99
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.98
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.97
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.97
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.96
PRK14727	479	putative mercuric reductase; Provisional	97.96
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.96
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.96
PLN02661	357	Putative thiazole synthesis	97.95
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.94
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
PRK06834	488	hypothetical protein; Provisional	97.94
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.93
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.92
PRK07045	388	putative monooxygenase; Reviewed	97.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.91
PRK08244	493	hypothetical protein; Provisional	97.91
PTZ00058	561	glutathione reductase; Provisional	97.9
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.9
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.9
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.89
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.89
PLN02463	447	lycopene beta cyclase	97.88
PRK08163	396	salicylate hydroxylase; Provisional	97.88
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.88
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.87
PRK12831	464	putative oxidoreductase; Provisional	97.86
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.85
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.84
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.82
PLN02852	491	ferredoxin-NADP+ reductase	97.81
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.79
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.78
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.78
PRK07208	479	hypothetical protein; Provisional	97.78
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	97.78
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.77
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.77
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.77
PLN02985	514	squalene monooxygenase	97.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.76
PRK06184	502	hypothetical protein; Provisional	97.76
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.75
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.74
PRK10157	428	putative oxidoreductase FixC; Provisional	97.73
PRK07588	391	hypothetical protein; Provisional	97.73
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.73
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.72
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.68
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.68
PLN02546	558	glutathione reductase	97.67
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.67
PRK05868	372	hypothetical protein; Validated	97.67
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.67
PLN02697	529	lycopene epsilon cyclase	97.67
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.66
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.66
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.65
PRK09126	392	hypothetical protein; Provisional	97.64
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.64
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.63
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.63
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.63
PRK08013	400	oxidoreductase; Provisional	97.61
PF14759	85	Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX	97.6
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.6
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.6
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.59
PRK06753	373	hypothetical protein; Provisional	97.59
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.59
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.59
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.58
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.57
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.56
COG3573	552	Predicted oxidoreductase [General function predict	97.56
PRK07190	487	hypothetical protein; Provisional	97.55
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.54
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.54
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.52
PRK10015	429	oxidoreductase; Provisional	97.51
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.51
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.49
PTZ00188	506	adrenodoxin reductase; Provisional	97.47
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.45
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.45
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.44
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.44
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.41
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.41
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.4
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.4
PRK06185	407	hypothetical protein; Provisional	97.39
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.39
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.39
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.39
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.38
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.37
PRK09897	534	hypothetical protein; Provisional	97.35
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.35
PRK06475	400	salicylate hydroxylase; Provisional	97.34
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.33
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.33
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.31
PRK13984	604	putative oxidoreductase; Provisional	97.31
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.3
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.29
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.28
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.28
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.28
PLN02568	539	polyamine oxidase	97.28
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.27
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.25
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.25
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.24
PRK06126	545	hypothetical protein; Provisional	97.23
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.22
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.22
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.21
PTZ00367	567	squalene epoxidase; Provisional	97.19
PRK06996	398	hypothetical protein; Provisional	97.17
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.15
PLN02576	496	protoporphyrinogen oxidase	97.13
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.11
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.1
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.1
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.1
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.09
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.09
PLN02268	435	probable polyamine oxidase	97.06
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.06
PRK07538	413	hypothetical protein; Provisional	97.06
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.03
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.03
COG3349	485	Uncharacterized conserved protein [Function unknow	97.03
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.02
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.01
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.99
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	96.98
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.97
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.94
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.94
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.9
PRK11445	351	putative oxidoreductase; Provisional	96.89
PRK02106	560	choline dehydrogenase; Validated	96.88
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	96.87
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.85
PRK05257	494	malate:quinone oxidoreductase; Validated	96.82
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.81
PRK08401	466	L-aspartate oxidase; Provisional	96.8
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	96.78
PLN02464	627	glycerol-3-phosphate dehydrogenase	96.78
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.78
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.74
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.74
PLN02676	487	polyamine oxidase	96.71
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.71
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.67
PRK07804	541	L-aspartate oxidase; Provisional	96.65
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	96.65
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	96.63
PRK12839	572	hypothetical protein; Provisional	96.6
PLN02529	738	lysine-specific histone demethylase 1	96.59
PLN02985	514	squalene monooxygenase	96.57
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.53
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.52
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.5
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.46
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.46
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.43
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.4
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	96.37
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.35
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.35
PRK08294	634	phenol 2-monooxygenase; Provisional	96.31
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.29
PRK08275	554	putative oxidoreductase; Provisional	96.26
PRK06175	433	L-aspartate oxidase; Provisional	96.24
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	96.23
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	96.23
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.21
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	96.2
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.2
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.14
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	96.12
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.12
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.09
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	96.08
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.07
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.06
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.98
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.97
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	95.88
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.83
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	95.8
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	95.75
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	95.73
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.67
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	95.67
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	95.66
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.61
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	95.6
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.58
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.56
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.53
PLN03000	881	amine oxidase	95.5
KOG2755	334	consensus Oxidoreductase [General function predict	95.44
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.42
PLN02785	587	Protein HOTHEAD	95.41
PRK08071	510	L-aspartate oxidase; Provisional	95.39
KOG2960	328	consensus Protein involved in thiamine biosynthesi	95.39
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.32
PLN02976	1713	amine oxidase	95.26
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.24
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	95.23
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	95.22

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=5.9e-54  Score=433.77  Aligned_cols=388  Identities=30%  Similarity=0.435  Sum_probs=325.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ++.+|||||||+||++||..|++++. ..+|+||++++..+|.+|.+++.++........           .....+++.
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~   69 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ   69 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence            55789999999999999999999875 567999999999999999888766543221110           123456788


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +.+++++.++.|..++++++++.+.+|+++.||+||||||++|+.++.   ++...+++++++++.++.++.+.+.  .+
T Consensus        70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~---~~~~~~~v~~~~~~~da~~l~~~~~--~~  144 (396)
T PRK09754         70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPL---LDALGERCFTLRHAGDAARLREVLQ--PE  144 (396)
T ss_pred             HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCC---CCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence            899999999899999999999999889899999999999999987765   4445577999999999988887665  47


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  242 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~  242 (479)
                      ++++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++.+.+.+.++++||++++++.+++++.  ++. ..+.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~  221 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT  221 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence            8999999999999999999999999999999999988777899999999999999999999999999975  232 3577


Q ss_pred             eCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHH
Q 011700          243 LRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA  321 (479)
Q Consensus       243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g  321 (479)
                      +.+|+++++|.|++++|.+||+.+++. ++.. +++|.||+++||++|+|||+|||+..+.. +|...+.++|..|..||
T Consensus       222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg  299 (396)
T PRK09754        222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA  299 (396)
T ss_pred             ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence            889999999999999999999987653 4444 46799999999999999999999987766 67777789999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE-EEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHH
Q 011700          322 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV-VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIA  400 (479)
Q Consensus       322 ~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~  400 (479)
                      ++||+||++..  ..|..+|++|+.+|+++++++|....+. +..++.....|..++.++|+|+|+..+|+ ..++..+.
T Consensus       300 ~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~  376 (396)
T PRK09754        300 QIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIR  376 (396)
T ss_pred             HHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHH
Confidence            99999999865  5678899999999999999999755443 34555555556667778999999999995 56777778


Q ss_pred             HHHHcCCCcCcHHHHh
Q 011700          401 KATRLQPVVEDLAELE  416 (479)
Q Consensus       401 ~~i~~~~~~~dl~~~~  416 (479)
                      .+|+.+.++. .+.+.
T Consensus       377 ~~~~~~~~~~-~~~~~  391 (396)
T PRK09754        377 KWIQSGKTFD-AKLLI  391 (396)
T ss_pred             HHHHCCCCCC-HHHhc
Confidence            8899888763 44444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=2.2e-55  Score=440.63  Aligned_cols=394  Identities=24%  Similarity=0.323  Sum_probs=301.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccCCCCC----CCCC-Cccccc
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLLPEAP----ARLP-SFHTCV   69 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~~~~~----~~~~-~~~~~~   69 (479)
                      |+.+||+||||+||||..||.++++.|.+   +.+||+.+  .+...|+      +|.++.....    .... .+....
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~--~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~   75 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGE--RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISA   75 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecC--CcCceEEeeCccccHHHHHHHHHHHHHhhcccccceec
Confidence            67789999999999999999999999987   99999995  2233333      2222221100    0000 011000


Q ss_pred             CC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC--CcEEEeceEEeecCCCcccccc
Q 011700           70 GA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT--GETISYKILIIATGARALKLEE  130 (479)
Q Consensus        70 ~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~--g~~~~~d~lviAtG~~~~~~~~  130 (479)
                      ..                 ........+++.++|+++.++..+   .+.++|.+.+  .++++++++|||||++|..||.
T Consensus        76 ~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f---~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~  152 (454)
T COG1249          76 EVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARF---VDPHTVEVTGEDKETITADNIIIATGSRPRIPPG  152 (454)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEE---CCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC
Confidence            00                 011123344566799999985433   3467777766  4789999999999999999998


Q ss_pred             cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHH
Q 011700          131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY  210 (479)
Q Consensus       131 ~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~  210 (479)
                      +++   +...+++.++.....+        .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+
T Consensus       153 ~~~---~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~  220 (454)
T COG1249         153 PGI---DGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKEL  220 (454)
T ss_pred             CCC---CCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHH
Confidence            444   4344554444222111        4899999999999999999999999999999999999996 899999999


Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCCCChh---hhhccccc-ccCcEEEcCcc
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~---l~~~~~~~-~~g~i~Vd~~l  284 (479)
                      .+.|++.|+++++++.+++++..+++  ..+.+++++  ++++|.|++|+||+||++   +.+.++.. ++|+|.||+++
T Consensus       221 ~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~  298 (454)
T COG1249         221 TKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQM  298 (454)
T ss_pred             HHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcc
Confidence            99999999999999999999874444  467777776  799999999999999998   34557887 55899999888


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  363 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  363 (479)
                      |||+|||||+|||++.++          +.+.|..||++|++||++ .....+|..+|+  ..+.+.+++.+|+++.++.
T Consensus       299 ~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~--~ift~Peia~VGlte~ea~  366 (454)
T COG1249         299 TTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS--VVFTDPEIASVGLTEEEAK  366 (454)
T ss_pred             ccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE--EEECCCcceeeeCCHHHHH
Confidence            889999999999998775          366789999999999997 333357888997  4456778899999876653


Q ss_pred             EEc--------cC----------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700          364 HYG--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF  422 (479)
Q Consensus       364 ~~~--------~~----------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~  422 (479)
                      ..+        ..          ....|.++.+  ++++|||+|++|++++|+ +.++.||+.+++.+|+..++..||++
T Consensus       367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~  446 (454)
T COG1249         367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL  446 (454)
T ss_pred             hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence            211        00          0135666554  679999999999999998 55899999999999999999999999


Q ss_pred             ccccCC
Q 011700          423 ALAVSQ  428 (479)
Q Consensus       423 a~~~~~  428 (479)
                      +|.+.+
T Consensus       447 sE~~~~  452 (454)
T COG1249         447 SEALKE  452 (454)
T ss_pred             HHHHHH
Confidence            987754

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=100.00  E-value=1.4e-53  Score=412.25  Aligned_cols=398  Identities=49%  Similarity=0.827  Sum_probs=357.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      ..++|||+|++|..|+.+++..+. ...++++.++.++||.++.+++.+.             +.+.+...+.++||+++
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~-------------~~~~~~a~r~~e~Yke~  140 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLL-------------TVGEGLAKRTPEFYKEK  140 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhccccee-------------eccccccccChhhHhhc
Confidence            579999999999999999998876 4678999989889998877765433             33445557788899999


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN  164 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  164 (479)
                      ++++++++.|+.+|...+++...+|+.+.|++|+||||+.++.|++   ||.+.+++++++++++++.+...+..  .++
T Consensus       141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~---pG~~~~nv~~ireieda~~l~~~~~~--~~~  215 (478)
T KOG1336|consen  141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDI---PGVELKNVFYLREIEDANRLVAAIQL--GGK  215 (478)
T ss_pred             CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCC---CCccccceeeeccHHHHHHHHHHhcc--Cce
Confidence            9999999999999999999999999999999999999999999998   77778999999999999998887764  678


Q ss_pred             EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700          165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  244 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~  244 (479)
                      ++++|+|++|+|++..|...+.+||++++.+.++++.|.+.+++.++++++++||++++++.+.+++.+.+|++..|.+.
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~  295 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLK  295 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             CCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700          245 DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  323 (479)
Q Consensus       245 ~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  323 (479)
                      |++++++|.|++.+|.+|++.+++.+ ....+|+|.||+++||++|||||+|||+.+|...++..++++|+..|+.+|+.
T Consensus       296 dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~  375 (478)
T KOG1336|consen  296 DGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQ  375 (478)
T ss_pred             cCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHh
Confidence            99999999999999999999998854 33478999999999999999999999999998888777779999999999998


Q ss_pred             HHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHH
Q 011700          324 AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKAT  403 (479)
Q Consensus       324 aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i  403 (479)
                      +...+..... ..++++|+||+.+|++.|.+.|...++.+.+|+.+...|..||++ ++.+++..-+...++.+.++..+
T Consensus       376 av~ai~~~~~-~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~  453 (478)
T KOG1336|consen  376 AVKAIKMAPQ-DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLA  453 (478)
T ss_pred             hhhhhhccCc-ccccccchHHHHHhhhhccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHH
Confidence            8777765443 238899999999999999999999999999999887789999999 99999999998888899999999


Q ss_pred             HcCCCcCcHHHHhhcCCCcc
Q 011700          404 RLQPVVEDLAELETQGLGFA  423 (479)
Q Consensus       404 ~~~~~~~dl~~~~~~~~~~a  423 (479)
                      +.++.+..+..+...+..++
T Consensus       454 ~~~~~v~~~~~~~~~~~~~~  473 (478)
T KOG1336|consen  454 RQGPEVTSLKLLSKSGDSFW  473 (478)
T ss_pred             hcCCcchhhhhccccchhhH
Confidence            99999987776665555444

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=3.8e-52  Score=425.23  Aligned_cols=396  Identities=19%  Similarity=0.294  Sum_probs=306.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhHHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKWYNE   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   83 (479)
                      ++|||||||+||++||.+|++++ +..+|+|||+++.+.|.++.++....  ..   .+..     ....... ..++++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~--~~---~~~~-----~~~~~~~~~~~~~~   70 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG--EV---VEDR-----KYALAYTPEKFYDR   70 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc--Cc---cCCH-----HHcccCCHHHHHHh
Confidence            48999999999999999998864 45779999999987777544432110  00   0000     0001112 344567


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCC---c--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATG---E--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g---~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      .+++++.+++|..||+++++|.+.++   +  +++||+||||||++|+.|+.      +.+++++++++.++..+.+.+.
T Consensus        71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~------~~~~~~~~~~~~~~~~l~~~l~  144 (438)
T PRK13512         71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF------ESDITFTLRNLEDTDAIDQFIK  144 (438)
T ss_pred             CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCC------CCCCeEEecCHHHHHHHHHHHh
Confidence            89999998899999999999887543   2  47899999999999976653      3367888999999988887776


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                      ...+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|+++||++++++++++++.  +   
T Consensus       145 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~---  218 (438)
T PRK13512        145 ANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING--N---  218 (438)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC--C---
Confidence            656899999999999999999999999999999999988875 8999999999999999999999999999963  1   


Q ss_pred             EEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700          239 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  316 (479)
Q Consensus       239 ~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  316 (479)
                       .+.+.+|+++++|.|++++|++||+++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+...+.+..
T Consensus       219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~  297 (438)
T PRK13512        219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG  297 (438)
T ss_pred             -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence             466778889999999999999999987764 4555 5688999999999999999999999754433343334466777


Q ss_pred             HHHHHHHHHHHHcCCCCCCCC-CCCCeEEEeecCcceEeecCCCceEEEEc-------c--C------CCCceEEEEc--
Q 011700          317 ARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------N--F------SGTTFGAYWV--  378 (479)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-------~--~------~~~~~~~~~~--  378 (479)
                      |.+||+++++||++... ..+ ++.+..+..+++++++.+|+++.++...+       .  .      ....|.++.+  
T Consensus       298 A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~  376 (438)
T PRK13512        298 AHRAASIVAEQIAGNDT-IEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT  376 (438)
T ss_pred             HHHHHHHHHHHhcCCCc-cccCCcccceEEEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence            89999999999997532 223 33444457788999999999886553221       0  0      0133555544  


Q ss_pred             cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          379 NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       379 ~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      ++++|||+|++|++ ++|+ +.++.+|+.++|++||.++.   +.|+|+|++
T Consensus       377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~  425 (438)
T PRK13512        377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSH  425 (438)
T ss_pred             CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCc
Confidence            58999999999986 7776 66899999999999998873   355555543

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-54  Score=398.14  Aligned_cols=416  Identities=19%  Similarity=0.232  Sum_probs=301.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-C-------CCCcccccccCC-----CCCCCCCCccccc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-Y-------ERPALSKGYLLP-----EAPARLPSFHTCV   69 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~-------~~~~l~~~~~~~-----~~~~~~~~~~~~~   69 (479)
                      .+||++|||||.+||+||.+++..|.++..+..+.+.|... |       +-.++++.++..     +..++-..+.+..
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~~   97 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWNV   97 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            36999999999999999999999999854455555665421 1       112223322221     1111111111111


Q ss_pred             CCc-ccCCCHhH------------------HHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccc
Q 011700           70 GAN-EERLTPKW------------------YNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        70 ~~~-~~~~~~~~------------------~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .+. ....+..+                  +++..|+++.. --.-+++..-..+..++  +.++++.++||||.+|+.|
T Consensus        98 ~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~Ns-ygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp  176 (503)
T KOG4716|consen   98 DEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINS-YGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP  176 (503)
T ss_pred             ccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeec-ceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence            110 11111111                  11222222221 11122222222222333  4689999999999999999


Q ss_pred             cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700          129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS  208 (479)
Q Consensus       129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  208 (479)
                      .+   ||. .+...+.+++....+        .|.+.+|||+||+++|||.+|+.+|.+||++.|+  ++-+.||+++++
T Consensus       177 ~I---pG~-~Ey~ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS--I~LrGFDqdmae  242 (503)
T KOG4716|consen  177 DI---PGA-KEYGITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS--ILLRGFDQDMAE  242 (503)
T ss_pred             CC---CCc-eeeeecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE--eecccccHHHHH
Confidence            88   663 233445555544332        4788999999999999999999999999999998  555569999999


Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc--ccCcE
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL--EKGGI  278 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~--~~g~i  278 (479)
                      .+.+.|+++||+|...+.+.+++..++++. .|...+   +  -+-++|.|+||+|+.++++-+   ..++..  ..|.|
T Consensus       243 ~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI  321 (503)
T KOG4716|consen  243 LVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKI  321 (503)
T ss_pred             HHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCcc
Confidence            999999999999999999999988677764 233322   2  245799999999999998743   345665  56889


Q ss_pred             EEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecC
Q 011700          279 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD  357 (479)
Q Consensus       279 ~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~  357 (479)
                      .||+.-+||+|+|||+||+.....         ++.+.|++.|+..|+++++.... .+|+.+|+  +.|.++++.++|+
T Consensus       322 ~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T--TVFTPLEy~c~Gl  390 (503)
T KOG4716|consen  322 PVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT--TVFTPLEYGCVGL  390 (503)
T ss_pred             ccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCce--eeecchhccccCC
Confidence            999999999999999999997643         67788999999999999987654 68888997  6677899999999


Q ss_pred             CCceEEE-EccCC--------------------CCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcH
Q 011700          358 NVGEVVH-YGNFS--------------------GTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDL  412 (479)
Q Consensus       358 ~~~~~~~-~~~~~--------------------~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl  412 (479)
                      ++++++. +|..+                    +..|.+...   ++.||+|.|++||+|+|+ +.++.|++.|+|+.||
T Consensus       391 sEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l  470 (503)
T KOG4716|consen  391 SEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDL  470 (503)
T ss_pred             CHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHH
Confidence            9987642 33221                    122333332   688999999999999998 7799999999999999


Q ss_pred             HHHhhcCCCcccccCCCCCCCCCCCCCcccccc
Q 011700          413 AELETQGLGFALAVSQKPLPSTPVDGKTVPGLV  445 (479)
Q Consensus       413 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  445 (479)
                      .+++++||+.|+.|+++.++|+||.|+++.+||
T Consensus       471 ~ntigIHPt~aE~Ft~L~itKrsG~d~~~as~C  503 (503)
T KOG4716|consen  471 DNTIGIHPTTAEEFTTLSITKRSGLDPTQASCC  503 (503)
T ss_pred             hhcccccccchhheeEEEEEecCCCCcccccCC
Confidence            999999999999999999999999999988776

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=3.8e-51  Score=420.33  Aligned_cols=403  Identities=22%  Similarity=0.269  Sum_probs=312.9

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG   85 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (479)
                      +|||||||+||+++|..|++++. ..+|+|||+++...|..+.+.. +....  ...+       ........+.+++.+
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~--~~~~-------~~~~~~~~~~~~~~g   70 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGF--FDDP-------NTMIARTPEEFIKSG   70 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-Eeccc--cCCH-------HHhhcCCHHHHHHCC
Confidence            79999999999999999998753 4579999999876665333321 11000  0000       011234556788889


Q ss_pred             cEEEeCceEEEEECCCcEEEeCC---CcEEE--eceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           86 IELVLGTRVKSADVRRKTLVTAT---GETIS--YKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~---g~~~~--~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      ++++.+++|++++++++.+.+.+   +.++.  ||+||||||++|..|++   +|.+.+++++++++.++.++++.+.+.
T Consensus        71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i---~g~~~~~v~~~~~~~~~~~l~~~l~~~  147 (444)
T PRK09564         71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPI---KNINLENVYTLKSMEDGLALKELLKDE  147 (444)
T ss_pred             CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCC---CCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence            99998889999999999888754   55666  99999999999988876   666667899999988888888877665


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.++++||++++++++.+++.  ++.+..
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~  225 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG  225 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence            679999999999999999999999999999999998887668999999999999999999999999999964  344444


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR  318 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  318 (479)
                      +.+. +.++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+.....+++..|.
T Consensus       226 v~~~-~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~  304 (444)
T PRK09564        226 VVTD-KGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN  304 (444)
T ss_pred             EEeC-CCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence            5444 457999999999999999987764 4665 568899999999999999999999997665555555567888999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc---------cCC--------CCceEEEEc--c
Q 011700          319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---------NFS--------GTTFGAYWV--N  379 (479)
Q Consensus       319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---------~~~--------~~~~~~~~~--~  379 (479)
                      +||+++|+||++.....+. ..+.....+++++++++|++++++...|         ...        ...|.++..  +
T Consensus       305 ~qg~~~a~ni~g~~~~~~~-~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~  383 (444)
T PRK09564        305 KLGRMVGENLAGRHVSFKG-TLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEAD  383 (444)
T ss_pred             HHHHHHHHHhcCCCCCCCC-cccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECC
Confidence            9999999999986432221 2333334578899999999876542111         111        134555554  6


Q ss_pred             CCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          380 KGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       380 ~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      +++|+|+|++|+. +.++ +.++.||++++|++|+.++.   +.|.|+|++.
T Consensus       384 ~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~p~~~~~  432 (444)
T PRK09564        384 TKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYAPPFART  432 (444)
T ss_pred             CCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccCCCCCCC
Confidence            8999999999986 7676 66899999999999998877   4555555543

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=2.7e-51  Score=422.71  Aligned_cols=398  Identities=19%  Similarity=0.244  Sum_probs=291.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCCCCcc-----
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARLPSFH-----   66 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~~~~~-----   66 (479)
                      ||++||||||||||||++||..|+++|++   |+|||+.+..  +.++.|. +|.++...      .....+++.     
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV   78 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence            77889999999999999999999999987   9999987431  1122222 11111000      000000000     


Q ss_pred             ---c--ccC------CcccCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCC
Q 011700           67 ---T--CVG------ANEERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        67 ---~--~~~------~~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                         .  ...      .........++++. |++++.++.+.   .+.+++.+ +++++.||+||||||++|+.|++   +
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i---~  151 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPPI---P  151 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCC---C
Confidence               0  000      00011233455666 99999986543   45677776 45689999999999999998887   6


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      |.+...+++.++..+..        ..+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|
T Consensus       152 G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l  222 (463)
T PRK06370        152 GLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREIL  222 (463)
T ss_pred             CCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHH
Confidence            65545555443332211        14799999999999999999999999999999999999886 7999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCCCCChh-h-h-hccccc-ccCcEEEcCcccCCCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-F-EGQLTL-EKGGIKVTGRLQSSNS  289 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~~p~~~-l-~-~~~~~~-~~g~i~Vd~~l~t~~~  289 (479)
                      +++||++++++.+.+++..+++....+... +++++++|.|++|+|++|+++ + + +.++.. ++|+|.||++|||++|
T Consensus       223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~  302 (463)
T PRK06370        223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNP  302 (463)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCC
Confidence            999999999999999987433322223333 345799999999999999998 3 2 334555 5688999999999999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc--
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--  366 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--  366 (479)
                      +|||+|||+..+          .....|..||+.|++||++. ....++..+|+  ..+++.+++++|+++.++...|  
T Consensus       303 ~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~~a~~~g~~  370 (463)
T PRK06370        303 GIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEAEARKSGRR  370 (463)
T ss_pred             CEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHHHHHHcCCC
Confidence            999999998764          34668999999999999975 32234555665  4477889999999876442111  


Q ss_pred             ---------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          367 ---------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       367 ---------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                               +       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++.+||+++|.+.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  450 (463)
T PRK06370        371 VLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIP  450 (463)
T ss_pred             eEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHH
Confidence                     1       01134555554  589999999999999998 5689999999999999999999999988765


Q ss_pred             CC
Q 011700          428 QK  429 (479)
Q Consensus       428 ~~  429 (479)
                      +.
T Consensus       451 ~a  452 (463)
T PRK06370        451 TL  452 (463)
T ss_pred             HH
Confidence            43

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5.2e-51  Score=420.03  Aligned_cols=397  Identities=18%  Similarity=0.212  Sum_probs=286.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCccc-ccccCCCC----CCCCCCcccccCC-
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPALS-KGYLLPEA----PARLPSFHTCVGA-   71 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l~-~~~~~~~~----~~~~~~~~~~~~~-   71 (479)
                      |+.+||++||||||||++||..|+++|.+   |+|||+.+..   +.++.|++ +.++....    ......+...... 
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~   77 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP   77 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence            78889999999999999999999999987   9999986421   22222222 21111000    0000000000000 


Q ss_pred             ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700           72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                                      .........+++.||+++.++ +..++.....+...+|  .+++||+||||||++|+.+|.  +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~--~  154 (471)
T PRK06467         78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF--I  154 (471)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC--C
Confidence                            000112234567799999984 4444432223333455  479999999999999975443  2


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      ++ +.+++++.   .++..+    .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.
T Consensus       155 ~~-~~~~v~~~---~~~~~~----~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~  224 (471)
T PRK06467        155 PH-DDPRIWDS---TDALEL----KE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKR  224 (471)
T ss_pred             CC-CCCcEECh---HHhhcc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHH
Confidence            33 23344432   222222    11 4799999999999999999999999999999999999986 899999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCccc
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQ  285 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~  285 (479)
                      |+++ |++++++.+++++..+++ + .+.+.+  +  +++++|.|++++|++||++++   ..++.. ++|+|.||+++|
T Consensus       225 l~~~-v~i~~~~~v~~i~~~~~~-~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~  301 (471)
T PRK06467        225 IKKQ-FNIMLETKVTAVEAKEDG-I-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCR  301 (471)
T ss_pred             Hhhc-eEEEcCCEEEEEEEcCCE-E-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcc
Confidence            9988 999999999999863333 2 344433  2  469999999999999999854   334665 578899999999


Q ss_pred             CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE
Q 011700          286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY  365 (479)
Q Consensus       286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~  365 (479)
                      |++|+|||+|||++.+          ..+..|.+||+.|+.+|++.....++..+|+.  .+++++++++|+++.++...
T Consensus       302 t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~ea~~~  369 (471)
T PRK06467        302 TNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--AYTEPEVAWVGLTEKEAKEE  369 (471)
T ss_pred             cCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceeEEECCHHHHHhc
Confidence            9999999999999754          35778999999999999986544566678864  47889999999987654321


Q ss_pred             c-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 011700          366 G-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFAL  424 (479)
Q Consensus       366 ~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~  424 (479)
                      |           +.       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||++++
T Consensus       370 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e  449 (471)
T PRK06467        370 GIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE  449 (471)
T ss_pred             CCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence            1           10       0134555544  579999999999999998 5689999999999999999888888887


Q ss_pred             ccCC
Q 011700          425 AVSQ  428 (479)
Q Consensus       425 ~~~~  428 (479)
                      .+..
T Consensus       450 ~~~~  453 (471)
T PRK06467        450 SVGL  453 (471)
T ss_pred             HHHH
Confidence            6644

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=8.8e-51  Score=416.02  Aligned_cols=392  Identities=17%  Similarity=0.219  Sum_probs=287.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccccC--C--
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTCVG--A--   71 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~~~--~--   71 (479)
                      ++|||+||||||||++||..|+++|++   |+|||++...  +.++.|+ +|.++...    .....+.+.....  .  
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   77 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF   77 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence            469999999999999999999999987   9999986431  1112222 11111000    0000011100000  0  


Q ss_pred             --------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc-cccCCCCC
Q 011700           72 --------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL-EEFGLSGS  136 (479)
Q Consensus        72 --------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~-~~~g~~g~  136 (479)
                                    .........+++.||+++.++.+.   .+.+++.+ +++.++||+||||||++|+.| ++   ||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i---~g~  150 (450)
T TIGR01421        78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENI---PGA  150 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCC---CCC
Confidence                          000112334566799999986543   34566766 566799999999999999887 55   554


Q ss_pred             CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700          137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS  216 (479)
Q Consensus       137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~  216 (479)
                      +  ..+   +.++...    +.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.|++
T Consensus       151 ~--~~~---~~~~~~~----~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~  219 (450)
T TIGR01421       151 E--LGT---DSDGFFA----LEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK  219 (450)
T ss_pred             c--eeE---cHHHhhC----ccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence            3  111   1122111    111 4799999999999999999999999999999999999875 899999999999999


Q ss_pred             CCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700          217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      +||++++++.+++++.+.++. ..+.+.++ +++++|.|++++|++||++++   ..++.. ++|+|.||+++||++|+|
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I  298 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI  298 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence            999999999999998633332 35667777 579999999999999999853   345655 568899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEE-cc-
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-GN-  367 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~~-  367 (479)
                      ||+|||++.+          ..+..|.+||+.+++||++...  ..++..+|.  ..+++.+++++|+++.++... +. 
T Consensus       299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlte~~a~~~~g~~  366 (450)
T TIGR01421       299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLTEKEAIEKYGKE  366 (450)
T ss_pred             EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCCHHHHHhhcCCC
Confidence            9999999755          3467899999999999996432  235667775  446677899999988654321 10 


Q ss_pred             ------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          368 ------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       368 ------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                                        .....|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.+++..||+++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T TIGR01421       367 NIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEEL  446 (450)
T ss_pred             CEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHH
Confidence                              01134555444  689999999999999998 568999999999999999999999998866


Q ss_pred             CC
Q 011700          427 SQ  428 (479)
Q Consensus       427 ~~  428 (479)
                      .+
T Consensus       447 ~~  448 (450)
T TIGR01421       447 VT  448 (450)
T ss_pred             hh
Confidence            54

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1.7e-50  Score=415.49  Aligned_cols=394  Identities=19%  Similarity=0.222  Sum_probs=290.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CC----------CCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PA----------RLP   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~----------~~~   63 (479)
                      |+.+|||+||||||||++||..|+++|++   |+|||++...  +.+..|+ ++.++....    ..          ..+
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN   77 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence            77789999999999999999999999987   9999987321  1222222 111111000    00          000


Q ss_pred             Ccccc--cC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCC
Q 011700           64 SFHTC--VG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG  135 (479)
Q Consensus        64 ~~~~~--~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g  135 (479)
                      .+.+.  ..      ........+.+.+.+++++.+ ++..++  .+++.+ ++++++||+||||||++|+.|++   +|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~i---~g  150 (450)
T PRK06116         78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPDI---PG  150 (450)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CC
Confidence            00000  00      000011223455689999998 566555  467777 67789999999999999988876   55


Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700          136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK  215 (479)
Q Consensus       136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~  215 (479)
                      .+  .+++..+   ...    +.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.|+
T Consensus       151 ~~--~~~~~~~---~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~  219 (450)
T PRK06116        151 AE--YGITSDG---FFA----LEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEME  219 (450)
T ss_pred             cc--eeEchhH---hhC----ccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHH
Confidence            42  2322222   111    111 4789999999999999999999999999999999988875 89999999999999


Q ss_pred             hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh---hhccccc-ccCcEEEcCcccCCCCCe
Q 011700          216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l---~~~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      ++||+++++++|.+++.++++.+ .+.+.+|+++++|.|++++|++|+++.   ...++.. ++|+|.||+++||++|+|
T Consensus       220 ~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~I  298 (450)
T PRK06116        220 KKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGI  298 (450)
T ss_pred             HCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCE
Confidence            99999999999999987444433 467788889999999999999999984   2345655 578899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEcc--
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGN--  367 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~--  367 (479)
                      ||+|||+..+          .++..|..||+.||+||++...  ..+|..+|+..  +...+++++|+++.++...+.  
T Consensus       299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~i--f~~p~~a~vGlte~~a~~~~~~~  366 (450)
T PRK06116        299 YAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVV--FSHPPIGTVGLTEEEAREQYGED  366 (450)
T ss_pred             EEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEE--eCCCccEEeeCCHHHHHHhCCCC
Confidence            9999998653          4577899999999999997543  24667788533  333588999998754322110  


Q ss_pred             ------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          368 ------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       368 ------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                                        .....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T PRK06116        367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEF  446 (450)
T ss_pred             cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHH
Confidence                              01234565554  589999999999999998 568999999999999999998999998876


Q ss_pred             CC
Q 011700          427 SQ  428 (479)
Q Consensus       427 ~~  428 (479)
                      ..
T Consensus       447 ~~  448 (450)
T PRK06116        447 VT  448 (450)
T ss_pred             hh
Confidence            54

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=2.4e-48  Score=419.94  Aligned_cols=385  Identities=21%  Similarity=0.335  Sum_probs=307.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      |+ ++++||||+|+||+.+|.+|++++. +..+|+||++++.++|.++.++..+.. ...           ........+
T Consensus         1 m~-~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~-----------~~l~~~~~~   67 (847)
T PRK14989          1 MS-KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTA-----------EELSLVREG   67 (847)
T ss_pred             CC-CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCH-----------HHccCCCHH
Confidence            55 4589999999999999999987643 345799999999999998877653321 110           112234577


Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS  159 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~  159 (479)
                      ++++++++++.+++|+.+|++.+.|.+.+|++++||+||||||++|+.|++   ||.+.++++.+++++++..++..+. 
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~i---pG~~~~~v~~~rt~~d~~~l~~~~~-  143 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPI---KGSETQDCFVYRTIEDLNAIEACAR-  143 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCC---CCCCCCCeEEECCHHHHHHHHHHHh-
Confidence            889999999999999999999999999889899999999999999998887   7777778999999999998877665 


Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                       .+++++|||+|++|+|+|..|.++|.+|+++++.++++++.++++.++.+.+.|+++||++++++.+++|..++++...
T Consensus       144 -~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~  222 (847)
T PRK14989        144 -RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARK  222 (847)
T ss_pred             -cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceE
Confidence             4789999999999999999999999999999999999987789999999999999999999999999999763334455


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHH
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA  317 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  317 (479)
                      .+.+.||+++++|.|++++|++||+++++. ++.. ++|+|.||++|||++|+|||+|||+..+...+      .++..|
T Consensus       223 ~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a  296 (847)
T PRK14989        223 TMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPG  296 (847)
T ss_pred             EEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHH
Confidence            688899999999999999999999998754 5666 57899999999999999999999998765433      467889


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCce-----EEEEccCCCCceEEEEc--cCCEEEEEEEeC
Q 011700          318 RKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-----VVHYGNFSGTTFGAYWV--NKGRLVGSFLEG  390 (479)
Q Consensus       318 ~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-----~~~~~~~~~~~~~~~~~--~~~~i~G~~~~g  390 (479)
                      ..||++||.||++..........| ...+.+++.+.+.|...+.     +..+.+.....|.++.+  ++++|+|++++|
T Consensus       297 ~~~a~vaa~~i~g~~~~~~g~~~~-~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvG  375 (847)
T PRK14989        297 YKMAQVAVDHLLGSENAFEGADLS-AKLKLLGVDVGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVG  375 (847)
T ss_pred             HHHHHHHHHHhcCCCcCCCCcccc-eEEEECCcceEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEEEC
Confidence            999999999999875322222223 3445677788888854332     33333333356777665  567999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCcCc
Q 011700          391 GTKEEYEAIAKATRLQPVVED  411 (479)
Q Consensus       391 ~~~~e~~~~~~~i~~~~~~~d  411 (479)
                      +.+ +...+...+..+.++.+
T Consensus       376 d~~-~~~~l~~~~~~~~~l~~  395 (847)
T PRK14989        376 DTS-DYGNLLQLVLNAIELPE  395 (847)
T ss_pred             CHH-HHHHHHHHHHcCCCCcc
Confidence            755 33333344556666654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=5.1e-50  Score=410.76  Aligned_cols=392  Identities=20%  Similarity=0.243  Sum_probs=287.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccccCC-----
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTCVGA-----   71 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~~~~-----   71 (479)
                      +||++||||||||++||..++++|++   |+|+|++...  +.++.|+ +|.++...    .....+.+......     
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   78 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW   78 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence            59999999999999999999999998   9999986321  1111222 22111100    00001111100000     


Q ss_pred             ------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700           72 ------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE  139 (479)
Q Consensus        72 ------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~  139 (479)
                                  .........+++.|++++.+ ++..++++...+. .++++++||+||||||++|..|++   ||.+  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i---~G~~--  151 (446)
T TIGR01424        79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNL---PGHE--  151 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCC---CCcc--
Confidence                        00112334566789999988 7777776533332 456789999999999999988876   5543  


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV  219 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  219 (479)
                      ...+   ..++..+    .. .+++++|||+|++|+|+|..|++.|.+|+++++.+.+++. +++++.+.+.+.|+++||
T Consensus       152 ~~~~---~~~~~~l----~~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (446)
T TIGR01424       152 LGIT---SNEAFHL----PT-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI  222 (446)
T ss_pred             ceec---hHHhhcc----cc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence            1221   2222221    11 4789999999999999999999999999999999998886 899999999999999999


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCeEEEe
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVG  295 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~IyA~G  295 (479)
                      ++++++.+.+++..+++  ..+.+.+++++++|.|++|+|++|+++.+   ..++.. ++|+|.||+++||++|+|||+|
T Consensus       223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G  300 (446)
T TIGR01424       223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG  300 (446)
T ss_pred             EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence            99999999999863333  34667788899999999999999999843   335655 5688999999999999999999


Q ss_pred             eeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-c------
Q 011700          296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-N------  367 (479)
Q Consensus       296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-~------  367 (479)
                      ||+..+          ..+..|.+||+.|++||++... ..++..+|+.+  +...+++++|+++.++...+ .      
T Consensus       301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~i--f~~p~ia~vG~te~~a~~~~~~~~~~~~  368 (446)
T TIGR01424       301 DVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAV--FSQPPLGTVGLTEEEAREKFTGDILVYR  368 (446)
T ss_pred             ccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEE--eCCchhEEEECCHHHHHhhcCCCEEEEE
Confidence            999754          4567899999999999997542 24556778533  23457899999875443221 0      


Q ss_pred             ----C--------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          368 ----F--------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       368 ----~--------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                          .        ....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+..
T Consensus       369 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  444 (446)
T TIGR01424       369 AGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT  444 (446)
T ss_pred             EecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence                0        0134555554  689999999999999998 56899999999999999999999999887654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=3.2e-50  Score=415.13  Aligned_cols=397  Identities=17%  Similarity=0.227  Sum_probs=290.6

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCcc-cccccCC-------CCCCCCCCcccc--
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP---YERPAL-SKGYLLP-------EAPARLPSFHTC--   68 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~---~~~~~l-~~~~~~~-------~~~~~~~~~~~~--   68 (479)
                      |++|||+||||||||++||.+|+++|++   |+|||+.+...   .+..+. ++.+...       .....+..+...  
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~   79 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLR   79 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCc
Confidence            3579999999999999999999999987   99999864321   111111 1111000       000000000000  


Q ss_pred             c-CCc-----------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccccccCCC
Q 011700           69 V-GAN-----------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        69 ~-~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                      . ...           ......+++++.+++++.+ .+..++....++...+++  +++||+||||||++|..|+.   +
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~---~  155 (461)
T PRK05249         80 ITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD---V  155 (461)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC---C
Confidence            0 000           0011234556789999988 566666655555555554  79999999999999998876   3


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      +.+.+++++..++.+.       .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       156 ~~~~~~v~~~~~~~~~-------~~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l  226 (461)
T PRK05249        156 DFDHPRIYDSDSILSL-------DH-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHL  226 (461)
T ss_pred             CCCCCeEEcHHHhhch-------hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHH
Confidence            3343445443322211       11 4799999999999999999999999999999999999886 8999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                      +++||++++++.+++++.+++ .+ .+.+.+|+++++|.|++|+|++|++.++   ..++.. ++|+|.||+++||+.|+
T Consensus       227 ~~~gI~v~~~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~  304 (461)
T PRK05249        227 RDSGVTIRHNEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPH  304 (461)
T ss_pred             HHcCCEEEECCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCC
Confidence            999999999999999986333 32 4567788899999999999999999853   335555 56889999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc----
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----  366 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~----  366 (479)
                      |||+|||++.+          ..+..|..||+.||.||++.....++..+|...  +...+++++|+++.++...|    
T Consensus       305 IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i--~~~p~ia~vG~te~~a~~~g~~~~  372 (461)
T PRK05249        305 IYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGI--YTIPEISSVGKTEQELTAAKVPYE  372 (461)
T ss_pred             EEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEE--ECCCcceEecCCHHHHHHcCCCeE
Confidence            99999999754          346789999999999999765445667788644  33457899999875432111    


Q ss_pred             -------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 -------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 -------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                             +.       ....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  451 (461)
T PRK05249        373 VGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRV  451 (461)
T ss_pred             EEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHH
Confidence                   10       1134555544  689999999999999998 56899999999999999999999998876643

>PLN02507 glutathione reductase

Probab=100.00  E-value=2.9e-49  Score=408.57  Aligned_cols=394  Identities=18%  Similarity=0.212  Sum_probs=290.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-------CCCCCCCccc------ccccCCCC----CCCCCCcc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-------VAPYERPALS------KGYLLPEA----PARLPSFH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-------~~~~~~~~l~------~~~~~~~~----~~~~~~~~   66 (479)
                      +||++||||||||+.||..|+++|.+   |+|||+..       ...+...|+.      |.++....    ......+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G  101 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG  101 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence            48999999999999999999999988   99999621       0112222222      22211000    00000000


Q ss_pred             cccCCc------------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcc
Q 011700           67 TCVGAN------------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARAL  126 (479)
Q Consensus        67 ~~~~~~------------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~  126 (479)
                      ......                  ........+.+.+|+++.+ ++..+++....+...+|+  ++.||+||||||++|.
T Consensus       102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence            000000                  0011223455689999998 777888877777777775  5889999999999998


Q ss_pred             cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700          127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI  206 (479)
Q Consensus       127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  206 (479)
                      .|++   ||.+  ...   +..++..+.    . .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++
T Consensus       181 ~p~i---pG~~--~~~---~~~~~~~l~----~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~  246 (499)
T PLN02507        181 RPNI---PGKE--LAI---TSDEALSLE----E-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM  246 (499)
T ss_pred             CCCC---CCcc--cee---chHHhhhhh----h-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence            8876   5532  122   223333221    2 3789999999999999999999999999999999988876 89999


Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTG  282 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~  282 (479)
                      .+.+.+.|+++||++++++.+++++.. ++.+ .+.+.+|+++++|.|++++|++|++.++   ..++.. ++|+|.||+
T Consensus       247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~  324 (499)
T PLN02507        247 RAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE  324 (499)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence            999999999999999999999999863 3333 4667788899999999999999999863   334655 568899999


Q ss_pred             cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCce
Q 011700          283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE  361 (479)
Q Consensus       283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~  361 (479)
                      ++||++|||||+|||+..+          ..++.|..||+++++||++.... ..+..+|.  ..+...+++++|+++.+
T Consensus       325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~--~if~~p~ia~vGlte~e  392 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVAC--AVFCIPPLSVVGLSEEE  392 (499)
T ss_pred             CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe--EEECCCccEEEeCCHHH
Confidence            9999999999999999754          35678999999999999875432 35556674  22334478999998754


Q ss_pred             EEEE-c--------cC----------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcC
Q 011700          362 VVHY-G--------NF----------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQG  419 (479)
Q Consensus       362 ~~~~-~--------~~----------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~  419 (479)
                      +... +        ..          ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..|
T Consensus       393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  472 (499)
T PLN02507        393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIH  472 (499)
T ss_pred             HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCC
Confidence            4321 1        00          0124555544  589999999999999887 56899999999999999999999


Q ss_pred             CCcccccCCC
Q 011700          420 LGFALAVSQK  429 (479)
Q Consensus       420 ~~~a~~~~~~  429 (479)
                      |+++|.+...
T Consensus       473 Pt~~E~~~~~  482 (499)
T PLN02507        473 PSAAEEFVTM  482 (499)
T ss_pred             CChHHHHHHH
Confidence            9999887654

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=7.1e-50  Score=412.16  Aligned_cols=396  Identities=21%  Similarity=0.276  Sum_probs=291.3

Q ss_pred             CCC--cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCC-------CC-C--CCC---
Q 011700            1 MGR--AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLP-------EA-P--ARL---   62 (479)
Q Consensus         1 M~~--~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~-------~~-~--~~~---   62 (479)
                      ||+  +|||+||||||||++||..|+++|.+   |+|||++...  +.++.|+ ++.++..       .. .  ..+   
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~   77 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ   77 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence            553  69999999999999999999999987   9999987531  1222222 1111100       00 0  000   


Q ss_pred             -CCccc--ccC--Ccc----c-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccc
Q 011700           63 -PSFHT--CVG--ANE----E-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLE  129 (479)
Q Consensus        63 -~~~~~--~~~--~~~----~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~  129 (479)
                       +.+..  ...  ...    . ......++++ +++++.+ ++..++.+.+.|.+.++  ++++||+||||||++|+.|+
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~  156 (468)
T PRK14694         78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP  156 (468)
T ss_pred             CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence             00000  000  000    0 0112223333 8999998 78889988888888776  47999999999999999888


Q ss_pred             ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHH
Q 011700          130 EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY  209 (479)
Q Consensus       130 ~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~  209 (479)
                      +   ||.+...+++.   .+...+    .. .+++++|||+|++|+|+|..|+++|.+|+++++ +++++. +++++.+.
T Consensus       157 i---~G~~~~~~~~~---~~~~~l----~~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~  223 (468)
T PRK14694        157 V---PGLAETPYLTS---TSALEL----DH-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA  223 (468)
T ss_pred             C---CCCCCCceEcc---hhhhch----hc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence            7   55443333322   222222    11 478999999999999999999999999999986 467775 79999999


Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---cccccccCcEEEcCcccC
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQS  286 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~~l~t  286 (479)
                      +++.|+++||++++++.+.+++.+ ++. ..+.+.+ .++++|.|++++|++|++.++.   .++..++|+|.||+++||
T Consensus       224 l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T  300 (468)
T PRK14694        224 IEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT  300 (468)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence            999999999999999999999863 332 2355444 4799999999999999998652   345556788999999999


Q ss_pred             CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc
Q 011700          287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG  366 (479)
Q Consensus       287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~  366 (479)
                      ++|+|||+|||+..+.          .+..|..||+.||.||++.....++..+|.  ..+++++++++|+++.++...|
T Consensus       301 s~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g  368 (468)
T PRK14694        301 TVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPE--VIFTDPQVATVGLSEAEAQAQG  368 (468)
T ss_pred             CCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCe--EEECCCCeEEeeCCHHHHHHcC
Confidence            9999999999997653          466789999999999997654455666776  4578899999999876442111


Q ss_pred             -----------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700          367 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA  425 (479)
Q Consensus       367 -----------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~  425 (479)
                                 .       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  448 (468)
T PRK14694        369 YDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEG  448 (468)
T ss_pred             CceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHH
Confidence                       0       01234666554  689999999999999998 56899999999999999999999999987


Q ss_pred             cCC
Q 011700          426 VSQ  428 (479)
Q Consensus       426 ~~~  428 (479)
                      +..
T Consensus       449 ~~~  451 (468)
T PRK14694        449 LKL  451 (468)
T ss_pred             HHH
Confidence            654

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=2e-49  Score=411.05  Aligned_cols=402  Identities=16%  Similarity=0.201  Sum_probs=288.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCCCC----CCCcccccCC--c--
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAPAR----LPSFHTCVGA--N--   72 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~~~----~~~~~~~~~~--~--   72 (479)
                      +||++||||||||++||..+++.|.+   |+|||++...  +-++.|+ +|.++.......    ...+......  +  
T Consensus        48 ~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~  124 (561)
T PTZ00058         48 VYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP  124 (561)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence            58999999999999999999999987   9999987431  2222233 222222111000    0000000000  0  


Q ss_pred             ------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEE----------------------------eCCCcEE
Q 011700           73 ------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLV----------------------------TATGETI  112 (479)
Q Consensus        73 ------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~----------------------------~~~g~~~  112 (479)
                                  ......+.+++.||+++.++..+ +  +.++|.                            ..+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f-~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i  201 (561)
T PTZ00058        125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSL-L--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVI  201 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEE-e--cCCEEEeeccccccccccccccccceeeeccceecCCCcEE
Confidence                        01112344567899999985422 1  222221                            2356789


Q ss_pred             EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700          113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF  192 (479)
Q Consensus       113 ~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~  192 (479)
                      +||+||||||++|+.|++   +|.+  .+++.   ++...    +.  .+++++|||+|++|+|+|..|.++|.+||+++
T Consensus       202 ~ad~lVIATGS~P~~P~I---pG~~--~v~ts---~~~~~----l~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~  267 (561)
T PTZ00058        202 EGKNILIAVGNKPIFPDV---KGKE--FTISS---DDFFK----IK--EAKRIGIAGSGYIAVELINVVNRLGAESYIFA  267 (561)
T ss_pred             ECCEEEEecCCCCCCCCC---CCce--eEEEH---HHHhh----cc--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEE
Confidence            999999999999988876   5543  23322   22211    22  37999999999999999999999999999999


Q ss_pred             ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-CcEEeccEEEEecCCCCChhhhhc--
Q 011700          193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTSLFEG--  269 (479)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~Vi~a~G~~p~~~l~~~--  269 (479)
                      +.+++++. +|+++.+.+.+.|+++||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++++|++|+++++..  
T Consensus       268 ~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~  345 (561)
T PTZ00058        268 RGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKA  345 (561)
T ss_pred             eccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCccc
Confidence            99998875 8999999999999999999999999999986433333 234444 457999999999999999987643  


Q ss_pred             -ccccccCcEEEcCcccCCCCCeEEEeeecccccc-----------------------ccCcee-ecccHHHHHHHHHHH
Q 011700          270 -QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHA  324 (479)
Q Consensus       270 -~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~a  324 (479)
                       ++..++|+|.||+++||++|+|||+|||+..+..                       .++++. ..+++..|.+||+++
T Consensus       346 ~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a  425 (561)
T PTZ00058        346 LNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL  425 (561)
T ss_pred             cceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence             2333678899999999999999999999984321                       223332 357788999999999


Q ss_pred             HHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEE-c---------cC--------------CCCceEEEEc-
Q 011700          325 VAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV-  378 (479)
Q Consensus       325 a~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~---------~~--------------~~~~~~~~~~-  378 (479)
                      +.||++... ..++..+|+.  .+.+.+++++|+++.++... +         ..              ....|.++.+ 
T Consensus       426 a~ni~g~~~~~~~~~~ip~~--vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~  503 (561)
T PTZ00058        426 ADRLFGPFSRTTNYKLIPSV--IFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCV  503 (561)
T ss_pred             HHHHhCCCCcccCCCCCCeE--EeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEE
Confidence            999997532 2456677853  23446899999987654321 1         00              0123555544 


Q ss_pred             -cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          379 -NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       379 -~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                       ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++|.+...
T Consensus       504 ~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~  556 (561)
T PTZ00058        504 GKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM  556 (561)
T ss_pred             CCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHh
Confidence             689999999999999998 568999999999999999999999999877654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.1e-49  Score=406.35  Aligned_cols=392  Identities=18%  Similarity=0.239  Sum_probs=286.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCCCCCCCCcccccC--Cc--
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEAPARLPSFHTCVG--AN--   72 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~--~~--   72 (479)
                      ++||||||||||||++||.+|+++|++   |+|||+++.. +...++..++      +....  ....+.....  ..  
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~-~GG~~~~~gcip~k~l~~~~~--~~~~~~~~~~~~~~~~   75 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAM-YGGTCINIGCIPTKTLVHDAQ--QHTDFVRAIQRKNEVV   75 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCc-cceeEeeccccchHHHHHHhc--cCCCHHHHHHHHHHHH
Confidence            569999999999999999999999987   9999987531 1112221111      11100  0001100000  00  


Q ss_pred             --ccC-CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc-EEEeceEEeecCCCcccccccCCCCCC-CCCeEEecCH
Q 011700           73 --EER-LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGARALKLEEFGLSGSD-AENVCYLRDL  147 (479)
Q Consensus        73 --~~~-~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~-~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~~  147 (479)
                        ... ......+..+++++.+ ++..++.....+...++. ++.||+||||||++|..|++   ||.+ .+++++...+
T Consensus        76 ~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i---~G~~~~~~v~~~~~~  151 (441)
T PRK08010         76 NFLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPI---PGITTTPGVYDSTGL  151 (441)
T ss_pred             HHHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCC---CCccCCCCEEChhHh
Confidence              000 0111222348999987 677777765666666664 69999999999999998887   5542 2445543322


Q ss_pred             HHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          148 ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       148 ~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .+       +.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|+++||++++++.+
T Consensus       152 ~~-------~~~-~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v  222 (441)
T PRK08010        152 LN-------LKE-LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHV  222 (441)
T ss_pred             hc-------ccc-cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEE
Confidence            21       111 4789999999999999999999999999999999999886 69999999999999999999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCeEEEeeecccccc
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLK  303 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~  303 (479)
                      .+++.+ ++.+ .+...++ ++++|.|++++|++||++++   ..++.. ++|+|.||+++||++|+|||+|||++.++ 
T Consensus       223 ~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-  298 (441)
T PRK08010        223 ERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-  298 (441)
T ss_pred             EEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-
Confidence            999863 3333 3454454 68999999999999999753   334655 56889999999999999999999998653 


Q ss_pred             ccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCceEEEEc-----------cCC-
Q 011700          304 LLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NFS-  369 (479)
Q Consensus       304 ~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----------~~~-  369 (479)
                               ....|..+|+.+++||++....  ..+..+|.  ..+++++++++|+++.++...|           +.. 
T Consensus       299 ---------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~  367 (441)
T PRK08010        299 ---------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPR  367 (441)
T ss_pred             ---------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence                     3556888999999999974221  34556774  4578899999999886543211           100 


Q ss_pred             ------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          370 ------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       370 ------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                            ...|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+..
T Consensus       368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  435 (441)
T PRK08010        368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND  435 (441)
T ss_pred             hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHH
Confidence                  123555544  689999999999999998 56899999999999999999888888886644

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-49  Score=410.42  Aligned_cols=396  Identities=22%  Similarity=0.297  Sum_probs=286.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCC----CCCCCcccccCC----
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAP----ARLPSFHTCVGA----   71 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~----~~~~~~~~~~~~----   71 (479)
                      .+||++||||||||++||..|+++|++   |+|||+++..  +.+..++ ++.++.....    ...+.+......    
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   79 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID   79 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence            469999999999999999999999987   9999998631  1122222 2221111000    000001000000    


Q ss_pred             -------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-CcEEEeceEEeecCCCcccccccCCCCCC
Q 011700           72 -------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-GETISYKILIIATGARALKLEEFGLSGSD  137 (479)
Q Consensus        72 -------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-g~~~~~d~lviAtG~~~~~~~~~g~~g~~  137 (479)
                                   .....+...+++.|++++.+ .+..+++...++...+ ++++.||+||||||++|..|+.  ++ .+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~  155 (462)
T PRK06416         80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID  155 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence                         00011233456789999998 5666665544454323 3689999999999999976532  21 11


Q ss_pred             CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700          138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK  217 (479)
Q Consensus       138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  217 (479)
                      ...+++   ..++..+.    . .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++
T Consensus       156 ~~~v~~---~~~~~~~~----~-~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~  226 (462)
T PRK06416        156 GRVIWT---SDEALNLD----E-VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR  226 (462)
T ss_pred             CCeEEc---chHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence            122333   23332221    1 4789999999999999999999999999999999999886 8999999999999999


Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hcccccccCcEEEcCcccCCCCCe
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~~~~I  291 (479)
                      ||++++++++.+++.+ ++.+ .+.+.++   +++++|.|++++|++|++.++   +.++..++|+|.||+++||++|+|
T Consensus       227 gV~i~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V  304 (462)
T PRK06416        227 GIKIKTGAKAKKVEQT-DDGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI  304 (462)
T ss_pred             CCEEEeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence            9999999999999873 3333 4555555   679999999999999999865   334555678899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----  366 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----  366 (479)
                      ||+|||+..+          ..+..|..||+.+|.||++.....++..+|.  ..+++++++++|+++.++...|     
T Consensus       305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~--~~~~~~~~a~vG~te~~a~~~g~~~~~  372 (462)
T PRK06416        305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIPA--VTYTHPEVASVGLTEAKAKEEGFDVKV  372 (462)
T ss_pred             EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCeEE
Confidence            9999999754          4577899999999999998543334444554  5678999999999876542211     


Q ss_pred             ------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 ------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 ------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                            ..       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||++++.+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  450 (462)
T PRK06416        373 VKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGE  450 (462)
T ss_pred             EEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHH
Confidence                  00       1133555444  689999999999999998 66899999999999999998889998876643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=2.2e-49  Score=406.91  Aligned_cols=396  Identities=16%  Similarity=0.221  Sum_probs=286.9

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCC-----C-CCCCCCCcccccccC------CCC----CCCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEE-----P-VAPYERPALSKGYLL------PEA----PARLPS   64 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~-----~-~~~~~~~~l~~~~~~------~~~----~~~~~~   64 (479)
                      +++||++||||||||+.||..++++ |.+   |+|||++     + ...+...|+..++..      ...    ......
T Consensus         1 ~~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~   77 (486)
T TIGR01423         1 SKAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAG   77 (486)
T ss_pred             CCccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhc
Confidence            3679999999999999999999996 777   9999974     0 011223333222221      100    000011


Q ss_pred             cccccC--C---c--------------ccCCCHhHHHH-cCcEEEeCceEEEEECCCcEEEeCC--------CcEEEece
Q 011700           65 FHTCVG--A---N--------------EERLTPKWYNE-HGIELVLGTRVKSADVRRKTLVTAT--------GETISYKI  116 (479)
Q Consensus        65 ~~~~~~--~---~--------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v~~~~--------g~~~~~d~  116 (479)
                      +.....  .   +              ......+++++ .+++++.+.. .-  .+.++|.+.+        .++++||+
T Consensus        78 ~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a-~f--~~~~~v~V~~~~~~~~~~~~~~~~d~  154 (486)
T TIGR01423        78 FGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG-AL--EDKNVVLVRESADPKSAVKERLQAEH  154 (486)
T ss_pred             cCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE-EE--ccCCEEEEeeccCCCCCcceEEECCE
Confidence            100000  0   0              00112233455 4899999853 32  4456666531        24799999


Q ss_pred             EEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEEee
Q 011700          117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFP  193 (479)
Q Consensus       117 lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~  193 (479)
                      ||||||++|..|++   +|.+  .+++.   .++..    +.. .+++++|||+|++|+|+|..|..+   |.+||++++
T Consensus       155 lIIATGs~p~~p~i---~G~~--~~~~~---~~~~~----~~~-~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~  221 (486)
T TIGR01423       155 ILLATGSWPQMLGI---PGIE--HCISS---NEAFY----LDE-PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYR  221 (486)
T ss_pred             EEEecCCCCCCCCC---CChh--heech---hhhhc----ccc-CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEec
Confidence            99999999988876   5543  23322   22221    112 479999999999999999877665   999999999


Q ss_pred             cCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---cc
Q 011700          194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQ  270 (479)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~  270 (479)
                      .+++++. +|+++++.+.+.|+++||++++++.+++++..+++ ...+.+.+++++++|.|++++|++|++.++.   .+
T Consensus       222 ~~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~g  299 (486)
T TIGR01423       222 NNMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVG  299 (486)
T ss_pred             CCccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhC
Confidence            9999885 89999999999999999999999999999864333 2356677888999999999999999998642   45


Q ss_pred             ccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeec
Q 011700          271 LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVF  348 (479)
Q Consensus       271 ~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~  348 (479)
                      +.. ++|+|.||+++||++|||||+|||++.+          ..++.|..||++|++||++... ..++..+|+..  +.
T Consensus       300 l~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~v--ft  367 (486)
T TIGR01423       300 VELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAV--FS  367 (486)
T ss_pred             ceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEE--eC
Confidence            665 5688999999999999999999999765          3466799999999999997542 24556678533  33


Q ss_pred             CcceEeecCCCceEEEEccC-------------------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcC
Q 011700          349 TLSWQFYGDNVGEVVHYGNF-------------------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQ  406 (479)
Q Consensus       349 ~~~~~~~G~~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~  406 (479)
                      .++++++|+++.++...++.                   ....|.++.+  ++++|||+|++|++++|+ +.++.||+.+
T Consensus       368 ~peia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~  447 (486)
T TIGR01423       368 IPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLN  447 (486)
T ss_pred             CCceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcC
Confidence            45789999987654322110                   0123555554  689999999999999998 5689999999


Q ss_pred             CCcCcHHHHhhcCCCcccccCCCC
Q 011700          407 PVVEDLAELETQGLGFALAVSQKP  430 (479)
Q Consensus       407 ~~~~dl~~~~~~~~~~a~~~~~~~  430 (479)
                      +|++||.+++.+||+++|.+....
T Consensus       448 ~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       448 AKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             CCHHHHhhcccCCCCcHHHHHhhc
Confidence            999999999999999999887773

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=6.3e-49  Score=404.54  Aligned_cols=410  Identities=19%  Similarity=0.209  Sum_probs=292.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---C---CCCCCcccccccCCC------C----CCCCCCccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV---A---PYERPALSKGYLLPE------A----PARLPSFHT   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~---~---~~~~~~l~~~~~~~~------~----~~~~~~~~~   67 (479)
                      +||+||||+||||+.||..+++.|.+   |++||+...   .   .....|+..++....      .    ......+..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~   78 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW   78 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence            58999999999999999999999987   999997310   0   122222222221100      0    000011100


Q ss_pred             ccCC----c--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC--CC--cEEEeceEEeecCCCc
Q 011700           68 CVGA----N--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA--TG--ETISYKILIIATGARA  125 (479)
Q Consensus        68 ~~~~----~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~--~g--~~~~~d~lviAtG~~~  125 (479)
                      ....    +              ........++..+|+++.+.. .-++  .+++.+.  ++  ++++||+||||||++|
T Consensus        79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p  155 (484)
T TIGR01438        79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP  155 (484)
T ss_pred             ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence            0000    0              001223346678999999843 4344  4455542  33  4799999999999999


Q ss_pred             ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700          126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  205 (479)
                      +.|++   ||.+ +..++.   .++..+    .. .+++++|||+|++|+|+|..|+++|.+||++.+ +.+++. +|++
T Consensus       156 ~~p~i---pG~~-~~~~~~---~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~  221 (484)
T TIGR01438       156 RYPGI---PGAK-ELCITS---DDLFSL----PY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD  221 (484)
T ss_pred             CCCCC---CCcc-ceeecH---HHhhcc----cc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence            88876   5542 122222   222211    11 478999999999999999999999999999997 467764 8999


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hcccccc--cCc
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLE--KGG  277 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~--~g~  277 (479)
                      +++.+++.|+++||++++++.+.+++.. ++. ..+.+.++   +++++|.|++++|++||++++   ..++..+  +|+
T Consensus       222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~  299 (484)
T TIGR01438       222 CANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK  299 (484)
T ss_pred             HHHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence            9999999999999999999999999863 333 24555555   379999999999999999864   3345553  478


Q ss_pred             EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeec
Q 011700          278 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYG  356 (479)
Q Consensus       278 i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G  356 (479)
                      |.||+++||++|+|||+|||+....         .+...|..||+.+++||++.... .++..+|.  ..+++++++++|
T Consensus       300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~i~~~p~ia~vG  368 (484)
T TIGR01438       300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPT--TVFTPLEYGACG  368 (484)
T ss_pred             EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCe--EEeCCCceeeec
Confidence            9999999999999999999996322         34677999999999999975422 45667786  346778899999


Q ss_pred             CCCceEEEE-cc---------C----------C--CCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcC
Q 011700          357 DNVGEVVHY-GN---------F----------S--GTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVE  410 (479)
Q Consensus       357 ~~~~~~~~~-~~---------~----------~--~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~  410 (479)
                      +++.++... +.         .          .  ...|.++.+   ++++|||+|++|+++.|+ +.++.||++++|++
T Consensus       369 lte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~  448 (484)
T TIGR01438       369 LSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKK  448 (484)
T ss_pred             CCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHH
Confidence            987644211 10         0          0  124555543   479999999999999998 56899999999999


Q ss_pred             cHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700          411 DLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL  446 (479)
Q Consensus       411 dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
                      ||.++...||++++.+.+.-.+++...+..+.+||+
T Consensus       449 dl~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~  484 (484)
T TIGR01438       449 DLDNTIGIHPVCAEVFTTLSVTKRSGQDILQQGCCG  484 (484)
T ss_pred             HHhhhhcCCCChHHHHHHhhhhhhcCCCchhcccCC
Confidence            999999999999999888766655555555677875

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.1e-49  Score=406.52  Aligned_cols=401  Identities=22%  Similarity=0.288  Sum_probs=287.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCcccccCC--
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHTCVGA--   71 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~~~~~--   71 (479)
                      |.+.||++||||||||++||.+|+++|++   |+|||++...  +-++.|+ ++.++....    ....+.+......  
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA   77 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            77789999999999999999999999987   9999986421  1111222 111111000    0000000000000  


Q ss_pred             -c--------------ccCCCHhHHHHcCcEEEeCceEEEEECC-------CcEEEeCCC--cEEEeceEEeecCCCccc
Q 011700           72 -N--------------EERLTPKWYNEHGIELVLGTRVKSADVR-------RKTLVTATG--ETISYKILIIATGARALK  127 (479)
Q Consensus        72 -~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~-------~~~v~~~~g--~~~~~d~lviAtG~~~~~  127 (479)
                       +              ......+.+++.+++++.+ .+..+++.       ..++.+.+|  +++.||+||||||++|..
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~  156 (472)
T PRK05976         78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE  156 (472)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence             0              0011224456779999998 67778776       445555566  579999999999999975


Q ss_pred             ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHH
Q 011700          128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA  207 (479)
Q Consensus       128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~  207 (479)
                      ++..  + .+...+++.   .++..+    .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.
T Consensus       157 ~p~~--~-~~~~~~~~~---~~~~~~----~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~  224 (472)
T PRK05976        157 LPGL--P-FDGEYVISS---DEALSL----ET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS  224 (472)
T ss_pred             CCCC--C-CCCceEEcc---hHhhCc----cc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence            5431  1 222223322   222221    11 3789999999999999999999999999999999999886 799999


Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh---cccccccCcEEEcC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTG  282 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~  282 (479)
                      +.+.+.|+++||++++++.+.+++..+++.+..+.+.+|  +++++|.|++++|++|+++.+.   .++..++|+|.||+
T Consensus       225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~  304 (472)
T PRK05976        225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD  304 (472)
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence            999999999999999999999997522333434445566  3699999999999999997542   23334568899999


Q ss_pred             cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700          283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE  361 (479)
Q Consensus       283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  361 (479)
                      ++||+.|+|||+|||+..+          +.+..|..||+.|++||.+.. ...++..+|.  ..+++.+++.+|+++.+
T Consensus       305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~  372 (472)
T PRK05976        305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEE  372 (472)
T ss_pred             CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHH
Confidence            9999999999999998654          457789999999999998764 2234445564  55788999999998754


Q ss_pred             EEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700          362 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL  420 (479)
Q Consensus       362 ~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~  420 (479)
                      +...|           ..       ....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.++...||
T Consensus       373 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  452 (472)
T PRK05976        373 AKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHP  452 (472)
T ss_pred             HHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCC
Confidence            32111           00       0134555544  579999999999999998 568999999999999999999999


Q ss_pred             CcccccCCC
Q 011700          421 GFALAVSQK  429 (479)
Q Consensus       421 ~~a~~~~~~  429 (479)
                      +++|.+...
T Consensus       453 t~~e~~~~~  461 (472)
T PRK05976        453 TLSEAIQEA  461 (472)
T ss_pred             ChHHHHHHH
Confidence            998876543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=1.6e-47  Score=414.22  Aligned_cols=383  Identities=25%  Similarity=0.370  Sum_probs=313.7

Q ss_pred             EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcCc
Q 011700            7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGI   86 (479)
Q Consensus         7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   86 (479)
                      |||||||+||+++|.+|++++.+..+|+||++++..+|.++.++.. +....  ..        .+......++++++++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~-l~g~~--~~--------~~l~~~~~~~~~~~gv   69 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSV-LQGEA--DL--------DDITLNSKDWYEKHGI   69 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHH-HCCCC--CH--------HHccCCCHHHHHHCCC
Confidence            6899999999999999998764456899999999999998877652 21111  10        1112446788999999


Q ss_pred             EEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEE
Q 011700           87 ELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAV  166 (479)
Q Consensus        87 ~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv  166 (479)
                      +++.+++|+.||+++++|.+.+|+++.||+||||||+.|+.|++   ||.+.++++.++++++++.+++.+.  .+++++
T Consensus        70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~i---pG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv  144 (785)
T TIGR02374        70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPI---PGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA  144 (785)
T ss_pred             EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCC---CCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence            99999999999999999999999999999999999999998887   7777788999999999998887665  478999


Q ss_pred             EECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC
Q 011700          167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG  246 (479)
Q Consensus       167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g  246 (479)
                      |||+|++|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.++++||++++++.++++..  ++.+..+.+.||
T Consensus       145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG  222 (785)
T TIGR02374       145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG  222 (785)
T ss_pred             EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence            999999999999999999999999999999988778999999999999999999999999999975  445667889999


Q ss_pred             cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700          247 NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV  325 (479)
Q Consensus       247 ~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  325 (479)
                      +++++|.|++++|.+|++++++. ++..+ ++|.||++|||++|+|||+|||+..+...+      ..+..|..||+++|
T Consensus       223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA  295 (785)
T TIGR02374       223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA  295 (785)
T ss_pred             CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence            99999999999999999998754 45554 789999999999999999999998765433      35778999999999


Q ss_pred             HHHcCCCCCCCCCCC-CeEEEeecCcceEeecCCCc----eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHH
Q 011700          326 AAIMEPDKTDKFDYL-PFFYSRVFTLSWQFYGDNVG----EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIA  400 (479)
Q Consensus       326 ~~i~~~~~~~~~~~~-p~~~~~~~~~~~~~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~  400 (479)
                      .||++... ..|... ......++++.+.+.|....    +.+.+.+.....|.++++++++|+|++++|+. .+...+.
T Consensus       296 ~ni~g~~~-~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavlvgd~-~~~~~L~  373 (785)
T TIGR02374       296 DHICGVEC-EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVLFGDT-SDYGRLL  373 (785)
T ss_pred             HHhcCCCC-cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEEECCH-HHHHHHH
Confidence            99998652 234433 33455678888888886432    23334444445688888889999999999964 4677777


Q ss_pred             HHHHcCCCcCcHHHHh
Q 011700          401 KATRLQPVVEDLAELE  416 (479)
Q Consensus       401 ~~i~~~~~~~dl~~~~  416 (479)
                      .+++.+..+.+...|+
T Consensus       374 ~li~~~~~l~~~~~ll  389 (785)
T TIGR02374       374 DMVLKQADISEDPAII  389 (785)
T ss_pred             HHHHcCCCCCcChhhh
Confidence            8888887776544544

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=6.6e-49  Score=405.18  Aligned_cols=393  Identities=23%  Similarity=0.275  Sum_probs=286.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCC--------CCccc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARL--------PSFHT   67 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~--------~~~~~   67 (479)
                      ||+|||||||||++||..|+++|++   |+|||+++..  +.++.|. ++.++...      ....+        ..+..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~   77 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE   77 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence            7999999999999999999999987   9999987531  1111111 11111000      00000        00000


Q ss_pred             cc-C-Cc----c-cCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700           68 CV-G-AN----E-ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAE  139 (479)
Q Consensus        68 ~~-~-~~----~-~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~  139 (479)
                      .. . ..    . .......+++.+++++.++ +..  .+.+++.+.++ +.+.||+||||||++|+.|++   ||.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~--~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i---~G~~~~  151 (463)
T TIGR02053        78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGR-ARF--KDPKTVKVDLGREVRGAKRFLIATGARPAIPPI---PGLKEA  151 (463)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEE-EEE--ccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCC---CCcccC
Confidence            00 0 00    0 0113355677899999884 443  34677877665 468999999999999998877   555444


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV  219 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  219 (479)
                      ++++..+..+   +    .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.+++.||
T Consensus       152 ~~~~~~~~~~---~----~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV  222 (463)
T TIGR02053       152 GYLTSEEALA---L----DR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI  222 (463)
T ss_pred             ceECchhhhC---c----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence            4444332211   1    11 3689999999999999999999999999999999999886 799999999999999999


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeC---CCcEEeccEEEEecCCCCChh-h-h-hccccc-ccCcEEEcCcccCCCCCeE
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-F-EGQLTL-EKGGIKVTGRLQSSNSSVY  292 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~Vi~a~G~~p~~~-l-~-~~~~~~-~~g~i~Vd~~l~t~~~~Iy  292 (479)
                      +++++++|++++.++++  ..+.+.   +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||++|||+.|+||
T Consensus       223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy  300 (463)
T TIGR02053       223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY  300 (463)
T ss_pred             EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence            99999999999873322  233332   236899999999999999998 3 2 334555 5788999999999999999


Q ss_pred             EEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700          293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----  366 (479)
Q Consensus       293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----  366 (479)
                      |+|||+..+          ..+..|..||+.||.||++. ....++..+|.  ..+++++++++|+++.++...|     
T Consensus       301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~  368 (463)
T TIGR02053       301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLTEAEAQKAGIECDC  368 (463)
T ss_pred             EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCCHHHHHhcCCCeEE
Confidence            999999864          45778999999999999975 33344555674  5677899999999876542111     


Q ss_pred             ------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          367 ------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       367 ------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                            .       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++..+||++.+.+..+
T Consensus       369 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a  447 (463)
T TIGR02053       369 RTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLA  447 (463)
T ss_pred             EEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHH
Confidence                  1       01134665554  589999999999999998 568999999999999999998899888766443

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=7.5e-49  Score=403.81  Aligned_cols=393  Identities=21%  Similarity=0.256  Sum_probs=287.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCcccccC-------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHTCVG-------   70 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~~~~-------   70 (479)
                      +|++|||+||+|+.||..++++|.+   |+|||+++..  +.+..|+ +|.++....    ....+.+.....       
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   78 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV   78 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence            5899999999999999999999887   9999987531  1111222 222221100    000000000000       


Q ss_pred             -------------CcccCCCHhHHHHcCcEEEeCceEEEEE--CCCcE--EEeCCCc--EEEeceEEeecCCCccccccc
Q 011700           71 -------------ANEERLTPKWYNEHGIELVLGTRVKSAD--VRRKT--LVTATGE--TISYKILIIATGARALKLEEF  131 (479)
Q Consensus        71 -------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~~~~--v~~~~g~--~~~~d~lviAtG~~~~~~~~~  131 (479)
                                   ........+.+++++++++.+ ++..++  .+.++  +...+|+  ++.||+||||||++|..||. 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~-  156 (466)
T PRK07845         79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT-  156 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence                         000112334566789999998 555533  33444  4445564  79999999999999987654 


Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE  211 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~  211 (479)
                        ++.+.+.+++.+++.+...        .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus       157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~  225 (466)
T PRK07845        157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE  225 (466)
T ss_pred             --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence              3334455666555433221        3689999999999999999999999999999999999987 7999999999


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh---hhccccc-ccCcEEEcCcccCC
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL---FEGQLTL-EKGGIKVTGRLQSS  287 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l---~~~~~~~-~~g~i~Vd~~l~t~  287 (479)
                      +.|+++||++++++++.+++.++ +.+ .+.+.+|+++++|.|++++|++||+.+   .+.++.. ++|+|.||+++||+
T Consensus       226 ~~L~~~gV~i~~~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts  303 (466)
T PRK07845        226 EVFARRGMTVLKRSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS  303 (466)
T ss_pred             HHHHHCCcEEEcCCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence            99999999999999999998633 333 466778889999999999999999985   3345666 56889999999999


Q ss_pred             CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEE--
Q 011700          288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH--  364 (479)
Q Consensus       288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~--  364 (479)
                      +|+|||+|||+..+          +++..|..||+.|+.|+++... ...+..+|.  ..+.+++++++|+++.++..  
T Consensus       304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~vf~~p~~a~vGlte~~a~~~g  371 (466)
T PRK07845        304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVAS--NVFTRPEIATVGVSQAAIDSGE  371 (466)
T ss_pred             CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCE--EEeCCCcceeecCCHHHHHhCC
Confidence            99999999999754          4577899999999999997542 235556774  33346889999998753321  


Q ss_pred             ---------EccCC-------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700          365 ---------YGNFS-------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA  425 (479)
Q Consensus       365 ---------~~~~~-------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~  425 (479)
                               +.+..       ...|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~  451 (466)
T PRK07845        372 VPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGS  451 (466)
T ss_pred             CceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHH
Confidence                     11110       134555554  689999999999999998 56899999999999999998888888775


Q ss_pred             cC
Q 011700          426 VS  427 (479)
Q Consensus       426 ~~  427 (479)
                      +.
T Consensus       452 ~~  453 (466)
T PRK07845        452 IT  453 (466)
T ss_pred             HH
Confidence            53

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=8.5e-49  Score=405.44  Aligned_cols=414  Identities=19%  Similarity=0.215  Sum_probs=294.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC----CC--CCCCCcccccccCCCC----------C-CCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP----VA--PYERPALSKGYLLPEA----------P-ARLP   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~----~~--~~~~~~l~~~~~~~~~----------~-~~~~   63 (479)
                      |..+||++||||||||++||.+|+++|.+   |+|||+++    ..  .+...|+..++.....          . ....
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~   78 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQ   78 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHh
Confidence            44469999999999999999999999987   99999632    10  1222222221111000          0 0000


Q ss_pred             CcccccC-----Cccc-----------CCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC---CcEEEeceEEeecCCC
Q 011700           64 SFHTCVG-----ANEE-----------RLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT---GETISYKILIIATGAR  124 (479)
Q Consensus        64 ~~~~~~~-----~~~~-----------~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~---g~~~~~d~lviAtG~~  124 (479)
                      .+.....     ....           ......++..+|+++.+. +..  .+.++|.+.+   ++.++||+||||||++
T Consensus        79 ~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~  155 (499)
T PTZ00052         79 MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGL-AKL--KDEHTVSYGDNSQEETITAKYILIATGGR  155 (499)
T ss_pred             cCCCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEE-EEE--ccCCEEEEeeCCCceEEECCEEEEecCCC
Confidence            0000000     0000           011122334678888773 333  3456666532   3579999999999999


Q ss_pred             ccccc-ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC
Q 011700          125 ALKLE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT  203 (479)
Q Consensus       125 ~~~~~-~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~  203 (479)
                      |+.|+ +   +|.+. ..+   +..+...+    .. .+++++|||+|++|+|+|..|+++|.+||++.+. .+++. ++
T Consensus       156 p~~p~~i---~G~~~-~~~---~~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d  221 (499)
T PTZ00052        156 PSIPEDV---PGAKE-YSI---TSDDIFSL----SK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FD  221 (499)
T ss_pred             CCCCCCC---CCccc-eee---cHHHHhhh----hc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CC
Confidence            98774 4   55431 122   22222221    11 4789999999999999999999999999999874 56664 89


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEE
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK  279 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~  279 (479)
                      +++++.+.+.|+++||++++++.+.+++..+ +. ..+.+.+|+++++|.|++++|++||++++.   .++.. ++|++.
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii  299 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKII  299 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEe
Confidence            9999999999999999999999999998633 33 346777888999999999999999998753   34555 467777


Q ss_pred             EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCC
Q 011700          280 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDN  358 (479)
Q Consensus       280 Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~  358 (479)
                      +++. ||++|+|||+|||+....         .++..|.+||+.+++||++.... .++..+|+..  +++++++++|++
T Consensus       300 ~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlt  367 (499)
T PTZ00052        300 APND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYS  367 (499)
T ss_pred             eCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCC
Confidence            7777 999999999999996321         45778999999999999975432 4566678633  567889999988


Q ss_pred             CceEEEE-cc---------C-------------------------CCCceEEEEc--c-CCEEEEEEEeCCCHHHH-HHH
Q 011700          359 VGEVVHY-GN---------F-------------------------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAI  399 (479)
Q Consensus       359 ~~~~~~~-~~---------~-------------------------~~~~~~~~~~--~-~~~i~G~~~~g~~~~e~-~~~  399 (479)
                      +.++... +.         .                         ....|.++.+  + +++|||+|++|++|+|+ +.+
T Consensus       368 e~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~  447 (499)
T PTZ00052        368 SEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGF  447 (499)
T ss_pred             HHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence            7644311 10         0                         0134666544  2 69999999999999998 568


Q ss_pred             HHHHHcCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCc-ccccccCC
Q 011700          400 AKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKT-VPGLVLGK  448 (479)
Q Consensus       400 ~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  448 (479)
                      +.||+.++|++||.+++..||+++|.+..+.++.+||.... ..||-++|
T Consensus       448 ~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~~~~~~~~~~~~~~~~~~~  497 (499)
T PTZ00052        448 SLALKLGAKKSDFDSMIGIHPTDAEVFMNLSVTRRSGESFAAKGGCGGGK  497 (499)
T ss_pred             HHHHHCCCCHHHHhcccccCCCCchhhEEEEeeccCCCChhhcccccccc
Confidence            99999999999999999999999999999989999987777 55774443

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1e-48  Score=402.80  Aligned_cols=398  Identities=19%  Similarity=0.217  Sum_probs=279.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCCCCC----C--CCCCcccccCC-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLPEAP----A--RLPSFHTCVGA-   71 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~~~~----~--~~~~~~~~~~~-   71 (479)
                      ++||++||||||||++||..++++|++   |+|||+....   +.++.|+ +|.++.....    .  ..+.+...... 
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~   78 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT   78 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence            459999999999999999999999987   9999974211   1222222 2221111000    0  00111000000 


Q ss_pred             -cc--------------cCCCHhHHHHcCcEEEeCceEEEEECCCc-EEEeCCCc--EEEeceEEeecCCCcccccccCC
Q 011700           72 -NE--------------ERLTPKWYNEHGIELVLGTRVKSADVRRK-TLVTATGE--TISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        72 -~~--------------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                       +.              ......++++.+++++.+. . .++.+.+ .+...+++  +++||+||||||++|..  +   
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~--i---  151 (466)
T PRK06115         79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP--L---  151 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC--C---
Confidence             00              0011233456689999874 2 3333322 23334553  69999999999999853  3   


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      ||.+.++...+++ .++..    +. ..+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+.+.
T Consensus       152 pg~~~~~~~~~~~-~~~~~----~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~  224 (466)
T PRK06115        152 PGVTIDNQRIIDS-TGALS----LP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKA  224 (466)
T ss_pred             CCCCCCCCeEECH-HHHhC----Cc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHH
Confidence            4433333333322 22211    11 14799999999999999999999999999999999999986 899999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CC--CcEEeccEEEEecCCCCChhhhh---cccccccCcEEEcCcccCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RD--GNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGRLQSS  287 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~--g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~~~g~i~Vd~~l~t~  287 (479)
                      |++.||++++++.+++++.++++....+.. .+  ++++++|.|++++|++||++.+.   .++..+++++.||+++||+
T Consensus       225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts  304 (466)
T PRK06115        225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTS  304 (466)
T ss_pred             HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecC
Confidence            999999999999999998633332222322 12  35799999999999999998542   2455544558899999999


Q ss_pred             CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE--
Q 011700          288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY--  365 (479)
Q Consensus       288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~--  365 (479)
                      +|+|||+|||+..+          .++..|.+||+.+++||++.....++..+|...  +.+++++++|+++.++...  
T Consensus       305 ~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~t~p~ia~vGlte~~a~~~g~  372 (466)
T PRK06115        305 VPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVI--YTRPEVATVGKTEEQLKAEGR  372 (466)
T ss_pred             CCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCcccEEeeCCHHHHHHCCC
Confidence            99999999999764          357789999999999999865445667788643  4567899999987644211  


Q ss_pred             ---------ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          366 ---------GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       366 ---------~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                               .+.       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++..+||+++|.+
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~  452 (466)
T PRK06115        373 AYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEAL  452 (466)
T ss_pred             CEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHH
Confidence                     110       1134555544  689999999999999998 568999999999999999999999998866


Q ss_pred             CCC
Q 011700          427 SQK  429 (479)
Q Consensus       427 ~~~  429 (479)
                      ...
T Consensus       453 ~~a  455 (466)
T PRK06115        453 RQA  455 (466)
T ss_pred             HHH
Confidence            443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-48  Score=403.17  Aligned_cols=395  Identities=23%  Similarity=0.289  Sum_probs=280.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCCC-----CCCCcccccCCc
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAPA-----RLPSFHTCVGAN   72 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~~-----~~~~~~~~~~~~   72 (479)
                      ||++||++||||||||++||.+|+++|.+   |+|||++...  +.+..++ ++.++......     ....+.......
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~   77 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVT   77 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcc
Confidence            77789999999999999999999999987   9999987421  1122222 11111100000     000000000000


Q ss_pred             c----------------cCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe--CCC--cEEEeceEEeecCCCcccccccC
Q 011700           73 E----------------ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT--ATG--ETISYKILIIATGARALKLEEFG  132 (479)
Q Consensus        73 ~----------------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~--~~g--~~~~~d~lviAtG~~~~~~~~~g  132 (479)
                      .                .......++..+|+.+.+. ...  .+.+++.+  .+|  ++++||+||||||++|+.||   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p---  151 (466)
T PRK07818         78 FDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP---  151 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC---
Confidence            0                0001112234577777663 222  33444443  344  47999999999999997643   


Q ss_pred             CCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700          133 LSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE  211 (479)
Q Consensus       133 ~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~  211 (479)
                        |.+ ...+++..+   .  +   .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.
T Consensus       152 --g~~~~~~v~~~~~---~--~---~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~  220 (466)
T PRK07818        152 --GTSLSENVVTYEE---Q--I---LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIA  220 (466)
T ss_pred             --CCCCCCcEEchHH---H--h---ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHH
Confidence              322 123443221   1  1   11124799999999999999999999999999999999999987 7999999999


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCc
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGR  283 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~  283 (479)
                      +.|+++||+++++++|++++.+ ++.+ .+.+.  +|  +++++|.|++++|++|+++++   ..++.. ++|+|.||++
T Consensus       221 ~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~  298 (466)
T PRK07818        221 KQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY  298 (466)
T ss_pred             HHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC
Confidence            9999999999999999999863 3322 34433  56  479999999999999999843   345655 5678999999


Q ss_pred             ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEeecCcceEeecCCCce
Q 011700          284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGE  361 (479)
Q Consensus       284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~  361 (479)
                      +||++|+|||+|||+..+          +++..|..||+.||.||++.... . ++..+|.  ..+++++++++|+++.+
T Consensus       299 ~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~  366 (466)
T PRK07818        299 MRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQ  366 (466)
T ss_pred             cccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHH
Confidence            999999999999999753          45778999999999999976432 2 5666775  45678899999998765


Q ss_pred             EEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700          362 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL  420 (479)
Q Consensus       362 ~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~  420 (479)
                      +...|           +.       ....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.++...||
T Consensus       367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP  446 (466)
T PRK07818        367 AREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHP  446 (466)
T ss_pred             HHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCC
Confidence            42211           10       1134555544  689999999999999998 568999999999999999998999


Q ss_pred             CcccccCCC
Q 011700          421 GFALAVSQK  429 (479)
Q Consensus       421 ~~a~~~~~~  429 (479)
                      +++|.+.+.
T Consensus       447 t~~e~~~~~  455 (466)
T PRK07818        447 TLSEALKEA  455 (466)
T ss_pred             chHHHHHHH
Confidence            998876543

>PLN02546 glutathione reductase

Probab=100.00  E-value=1.4e-48  Score=404.98  Aligned_cols=392  Identities=17%  Similarity=0.210  Sum_probs=287.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-------CCCCCCCccccccc------CC----CCCCCCCCcc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-------VAPYERPALSKGYL------LP----EAPARLPSFH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-------~~~~~~~~l~~~~~------~~----~~~~~~~~~~   66 (479)
                      +|||+|||+||||+.||..|+++|.+   |+|||+..       ...+...|+..++.      ..    ........+.
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g  155 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG  155 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence            58999999999999999999999998   99999620       11222333322221      10    0000001111


Q ss_pred             cccCC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc
Q 011700           67 TCVGA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        67 ~~~~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .....                  .....+...+++.|++++.+ ++..+++  +++.+ +|+++.||+||||||++|..|
T Consensus       156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P  231 (558)
T PLN02546        156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP  231 (558)
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence            00000                  00112334456789999998 5666665  45655 577899999999999999988


Q ss_pred             cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700          129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS  208 (479)
Q Consensus       129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  208 (479)
                      ++   ||.+  .++   +..++..+    . ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+
T Consensus       232 ~I---pG~~--~v~---~~~~~l~~----~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~  297 (558)
T PLN02546        232 DI---PGIE--HAI---DSDAALDL----P-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD  297 (558)
T ss_pred             CC---CChh--hcc---CHHHHHhc----c-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence            77   5532  222   22222211    1 14789999999999999999999999999999999998885 8999999


Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l  284 (479)
                      .+.+.|+++||++++++.+.+++..+++.+ .+.+.+++...+|.|++++|++||++++   +.++.. ++|+|.||+++
T Consensus       298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l  376 (558)
T PLN02546        298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS  376 (558)
T ss_pred             HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence            999999999999999999999986444433 4555555555689999999999999853   345666 56889999999


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  363 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  363 (479)
                      ||++|+|||+|||+..+          .+++.|..||+.+++||++... ..+|..+|+.  .+...+++++|+++.++.
T Consensus       377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~--vft~Peia~VGlte~eA~  444 (558)
T PLN02546        377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA--VFSQPPIGQVGLTEEQAI  444 (558)
T ss_pred             eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE--EeCCchHhhccCCHHHHH
Confidence            99999999999999754          3567899999999999998543 2467778852  233457899999887543


Q ss_pred             EEcc-----------C-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700          364 HYGN-----------F-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF  422 (479)
Q Consensus       364 ~~~~-----------~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~  422 (479)
                      ..+.           .       ....|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.+++..||++
T Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~  524 (558)
T PLN02546        445 EEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTA  524 (558)
T ss_pred             HcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence            2110           0       1134665554  689999999999999998 56899999999999999999999999


Q ss_pred             ccccCCC
Q 011700          423 ALAVSQK  429 (479)
Q Consensus       423 a~~~~~~  429 (479)
                      +|.+...
T Consensus       525 ~E~~~~~  531 (558)
T PLN02546        525 AEEFVTM  531 (558)
T ss_pred             HHHHHHH
Confidence            9877655

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=7.7e-49  Score=401.83  Aligned_cols=392  Identities=18%  Similarity=0.219  Sum_probs=284.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCCC-CCCCCccccc---CCc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEAP-ARLPSFHTCV---GAN   72 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~~-~~~~~~~~~~---~~~   72 (479)
                      ++||||||||||||++||..|+++|++   |+|||+++.. +...|+..++      +..... .++.......   ...
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~-~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~   77 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAM-YGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSR   77 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcc-cceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHH
Confidence            469999999999999999999999987   9999998632 2222221111      110000 0000000000   000


Q ss_pred             ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC---CcEEEeceEEeecCCCcccccccCCCCCC-CCCeEEecCHH
Q 011700           73 EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT---GETISYKILIIATGARALKLEEFGLSGSD-AENVCYLRDLA  148 (479)
Q Consensus        73 ~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~---g~~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~~~  148 (479)
                      ......+.+.+.+|+++.++ +..  .+++++.+.+   ..++.||+||||||++|+.|++   ||.+ ..++++..++.
T Consensus        78 ~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i---~G~~~~~~v~~~~~~~  151 (438)
T PRK07251         78 LRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPI---PGLADSKHVYDSTGIQ  151 (438)
T ss_pred             HHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCC---CCcCCCCcEEchHHHh
Confidence            01112345667899999874 332  3566666543   2479999999999999998887   5542 34455433222


Q ss_pred             HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       149 ~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                         .+    .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++++||+++++++++
T Consensus       152 ---~~----~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~  222 (438)
T PRK07251        152 ---SL----ET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTT  222 (438)
T ss_pred             ---cc----hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence               21    11 4789999999999999999999999999999999999886 689999999999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccc
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL  304 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~  304 (479)
                      +++. +++.+ .+. .+++++++|.|++|+|++|+++.+.   .++.. ++|+|.||+++||+.|+|||+|||++.+.  
T Consensus       223 ~i~~-~~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~--  297 (438)
T PRK07251        223 EVKN-DGDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ--  297 (438)
T ss_pred             EEEe-cCCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence            9986 33333 233 4567899999999999999987543   34444 56889999999999999999999997653  


Q ss_pred             cCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----------cCC--
Q 011700          305 LGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------NFS--  369 (479)
Q Consensus       305 ~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----------~~~--  369 (479)
                              ....|..+|+.++.++++...  ...+..+|+  ..+++.+++.+|+++.++...|           ...  
T Consensus       298 --------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~  367 (438)
T PRK07251        298 --------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPT--TMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRA  367 (438)
T ss_pred             --------cHhHHHHHHHHHHHHHcCCCCccccccCCCCE--EEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhh
Confidence                    355678899999999987532  134456775  3568999999999876543221           000  


Q ss_pred             -----CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          370 -----GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       370 -----~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                           ...|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.++...||+++|.+.+
T Consensus       368 ~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  434 (438)
T PRK07251        368 HVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLND  434 (438)
T ss_pred             hhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHH
Confidence                 123555544  689999999999999998 56899999999999999999889998876543

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=3.8e-48  Score=396.32  Aligned_cols=389  Identities=20%  Similarity=0.251  Sum_probs=282.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------------CCC-CCCCccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------------APA-RLPSFHT   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------------~~~-~~~~~~~   67 (479)
                      +||+|||||||||..||..+  .|.+   |+|||++...  +.++.|+ +|.++...            ... ..+.+.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   75 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--ADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW   75 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence            48999999999999988663  4776   9999987531  2233232 22211100            000 0000000


Q ss_pred             -----cc---CCcccC-CCHhH-HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC
Q 011700           68 -----CV---GANEER-LTPKW-YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD  137 (479)
Q Consensus        68 -----~~---~~~~~~-~~~~~-~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~  137 (479)
                           ..   -..... ....+ ++..|++++.+.... +  ++++|.+.++++++||+||||||++|+.|++   +|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~i---~g~~  149 (451)
T PRK07846         76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPPV---IADS  149 (451)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCCC---CCcC
Confidence                 00   000001 12233 567899999984433 3  5788888878889999999999999998887   5543


Q ss_pred             CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700          138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK  217 (479)
Q Consensus       138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  217 (479)
                      ...+++   .+++..+.    . .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus       150 ~~~~~~---~~~~~~l~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~  219 (451)
T PRK07846        150 GVRYHT---SDTIMRLP----E-LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK  219 (451)
T ss_pred             CccEEc---hHHHhhhh----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence            333333   33333221    1 3799999999999999999999999999999999998875 8999998887655 56


Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCCeEE
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSSVYA  293 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~IyA  293 (479)
                      +|++++++++++++.+ ++.+ .+.+.+|+++++|.|++++|++|+++++.   .++.. ++|+|.||+++||++|+|||
T Consensus       220 ~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA  297 (451)
T PRK07846        220 RWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA  297 (451)
T ss_pred             CeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence            8999999999999863 3333 46677888999999999999999998753   35666 57889999999999999999


Q ss_pred             EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc-----
Q 011700          294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----  366 (479)
Q Consensus       294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-----  366 (479)
                      +|||+..+          ++...|.+||+++++||++...  ..++..+|..  .+.+++++++|+++.++...|     
T Consensus       298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--if~~p~ia~vGlte~~a~~~g~~~~~  365 (451)
T PRK07846        298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAA--VFTHPQIASVGLTENEARAAGLDITV  365 (451)
T ss_pred             EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE--EECCCCcEeEeCCHHHHHhcCCCEEE
Confidence            99999864          3456789999999999997532  2466778864  345788999999886543211     


Q ss_pred             ------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHh-hcCCCcccccC
Q 011700          367 ------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELE-TQGLGFALAVS  427 (479)
Q Consensus       367 ------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~-~~~~~~a~~~~  427 (479)
                            +       .....|.++.+  +++||||+|++|+++.|+ +.++.||++++|++||.++. ..||++++.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~  443 (451)
T PRK07846        366 KVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVE  443 (451)
T ss_pred             EEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHH
Confidence                  1       01134555544  689999999999999998 66899999999999999865 57888877553

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=1.3e-46  Score=378.21  Aligned_cols=362  Identities=22%  Similarity=0.313  Sum_probs=287.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+  +++||||||+||+++|..|++++ +..+|+||++++..+|++|.++..+........+          ......++
T Consensus         1 m~--~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~----------~~~~~~~~   67 (377)
T PRK04965          1 MS--NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDL----------TRQSAGEF   67 (377)
T ss_pred             CC--CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHh----------hcCCHHHH
Confidence            64  69999999999999999998864 4578999999998899888775433211111000          01124567


Q ss_pred             HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      +++++++++.+++|.+++++++++.+ ++.++.||+||||||++|..|++   +|.+.  ++.++++.++..+...+.  
T Consensus        68 ~~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i---~G~~~--v~~~~~~~~~~~~~~~~~--  139 (377)
T PRK04965         68 AEQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPI---PGREL--MLTLNSQQEYRAAETQLR--  139 (377)
T ss_pred             HHhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCC---CCCce--EEEECCHHHHHHHHHHhh--
Confidence            78899999999899999999888886 56689999999999999988876   66443  888889888887776664  


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+.+++.+ ++ ...
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~  217 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DS-GIR  217 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CC-EEE
Confidence            4789999999999999999999999999999999999887779999999999999999999999999999863 22 235


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHH
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK  319 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  319 (479)
                      +.+.+|+++++|.|++|+|.+|++.+++. ++..++ +|.||++|||++|+|||+|||+..+..      ..+.+..|..
T Consensus       218 v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~  290 (377)
T PRK04965        218 ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQL  290 (377)
T ss_pred             EEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHH
Confidence            77889999999999999999999988754 455554 599999999999999999999986532      1245677899


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCC-eEEEeecCcceEeecCCCceE--EEEccCCCCceEEEEccCCEEEEEEEeCCCHH
Q 011700          320 SAKHAVAAIMEPDKTDKFDYLP-FFYSRVFTLSWQFYGDNVGEV--VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKE  394 (479)
Q Consensus       320 ~g~~aa~~i~~~~~~~~~~~~p-~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~  394 (479)
                      ||+.+|+||++...  .|...+ .....++++++.++|...++.  ....+.....|.+++.++|+|+|+.++|+...
T Consensus       291 ~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~  366 (377)
T PRK04965        291 SAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK  366 (377)
T ss_pred             HHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence            99999999998763  444433 234467788899999764321  11122333568888889999999999997653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-47  Score=401.14  Aligned_cols=395  Identities=19%  Similarity=0.233  Sum_probs=281.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC--C--CCCCCCcc-cccccCCCC-------CCCCCCcccc---
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP--V--APYERPAL-SKGYLLPEA-------PARLPSFHTC---   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~--~--~~~~~~~l-~~~~~~~~~-------~~~~~~~~~~---   68 (479)
                      +||++|||+||||+.||..++++|.+   |+|||+..  .  .+.++.|+ +|.++....       ....+.+...   
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~  192 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA  192 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence            68999999999999999999999998   99999752  1  11222222 222211100       0000011000   


Q ss_pred             --------------c-CC---c--------------ccCCCHhHHHHcC-------cEEEeCceEEEEECCCcEEEe-CC
Q 011700           69 --------------V-GA---N--------------EERLTPKWYNEHG-------IELVLGTRVKSADVRRKTLVT-AT  108 (479)
Q Consensus        69 --------------~-~~---~--------------~~~~~~~~~~~~g-------v~~~~~~~v~~i~~~~~~v~~-~~  108 (479)
                                    . ..   +              ........+++.+       ++++.+...+   .+.+++.+ .+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f---~~~~~v~v~~~  269 (659)
T PTZ00153        193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI---VDKNTIKSEKS  269 (659)
T ss_pred             ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE---ecCCeEEEccC
Confidence                          0 00   0              0011222344443       7777774322   23455555 35


Q ss_pred             CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeE
Q 011700          109 GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINV  188 (479)
Q Consensus       109 g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~V  188 (479)
                      ++++.||+||||||++|..|+.   ++.+..++++..+   +..+.    . .+++++|||+|++|+|+|..|.++|.+|
T Consensus       270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts~d---~~~l~----~-lpk~VvIVGgG~iGvE~A~~l~~~G~eV  338 (659)
T PTZ00153        270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTSDT---AVKLE----G-LQNYMGIVGMGIIGLEFMDIYTALGSEV  338 (659)
T ss_pred             CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEehHH---hhhhh----h-cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence            6789999999999999988775   3344455665433   33221    1 3789999999999999999999999999


Q ss_pred             EEEeecCccccccCCHHHHHHHHHHH-HhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-------C--------cEEecc
Q 011700          189 TMVFPEAHCMARLFTPKIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTD  252 (479)
Q Consensus       189 tlv~~~~~~l~~~~~~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D  252 (479)
                      |++++.+++++. +++++.+.+.+.+ +++||++++++.|.+++..+++....+.+.+       +        +++++|
T Consensus       339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD  417 (659)
T PTZ00153        339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD  417 (659)
T ss_pred             EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence            999999999986 8999999998875 6799999999999999874333323343321       1        379999


Q ss_pred             EEEEecCCCCChhhh---hcccccccCcEEEcCcccCC------CCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700          253 MVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  323 (479)
Q Consensus       253 ~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~------~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  323 (479)
                      .|++|+|++||++.+   ..++..++|+|.||++|||+      +|+|||+|||++.+          .++..|..||+.
T Consensus       418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~  487 (659)
T PTZ00153        418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK  487 (659)
T ss_pred             EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence            999999999999864   23455566889999999997      69999999998654          457789999999


Q ss_pred             HHHHHcCC-------------CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-------------cCC--------
Q 011700          324 AVAAIMEP-------------DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NFS--------  369 (479)
Q Consensus       324 aa~~i~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-------------~~~--------  369 (479)
                      +++||++.             ....+|..+|.  ..+++++++++|+++.++...+             ...        
T Consensus       488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~  565 (659)
T PTZ00153        488 VVDWIEGKGKENVNINVENWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI  565 (659)
T ss_pred             HHHHHcCCCccccccccccccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence            99999975             22234566774  5567888999999876443221             000        


Q ss_pred             ---------------------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccc
Q 011700          370 ---------------------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALA  425 (479)
Q Consensus       370 ---------------------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~  425 (479)
                                           ...|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.++...||+++|.
T Consensus       566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~  645 (659)
T PTZ00153        566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEV  645 (659)
T ss_pred             ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence                                 234555544  689999999999999998 55899999999999999999899998886


Q ss_pred             cCC
Q 011700          426 VSQ  428 (479)
Q Consensus       426 ~~~  428 (479)
                      +..
T Consensus       646 ~~~  648 (659)
T PTZ00153        646 LDA  648 (659)
T ss_pred             HHH
Confidence            644

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=7.8e-48  Score=406.68  Aligned_cols=395  Identities=20%  Similarity=0.245  Sum_probs=285.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC------CCCCC-CCcccccCCc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE------APARL-PSFHTCVGAN   72 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~------~~~~~-~~~~~~~~~~   72 (479)
                      .+||||||||||||++||..|++.|.+   |+|||++...  +.++.|+ ++.++...      ....+ +++.......
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~  173 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI  173 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence            359999999999999999999999987   9999987421  1222222 22111000      00000 0110000000


Q ss_pred             ----c-----------c-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700           73 ----E-----------E-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        73 ----~-----------~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                          .           . ......+++. +|+++.+ ++..++.....+...+|  ++++||+||||||++|..|++   
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i---  249 (561)
T PRK13748        174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPI---  249 (561)
T ss_pred             CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC---
Confidence                0           0 0112234444 7999988 67767765555655555  369999999999999998887   


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      +|.+...+  +.+.+   .+.   ....+++++|||+|++|+|+|..|+++|.+|+++++. .+++. +++++++.+.+.
T Consensus       250 ~g~~~~~~--~~~~~---~~~---~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~  319 (561)
T PRK13748        250 PGLKETPY--WTSTE---ALV---SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA  319 (561)
T ss_pred             CCCCccce--EccHH---Hhh---cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence            55432222  22221   111   1124799999999999999999999999999999985 56665 799999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNS  289 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~  289 (479)
                      |++.||++++++.+++++.+ ++.+ .+.+.++ ++++|.|++++|++||+.++   +.++.. ++|+|.||+++||++|
T Consensus       320 l~~~gI~i~~~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~  396 (561)
T PRK13748        320 FRAEGIEVLEHTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP  396 (561)
T ss_pred             HHHCCCEEEcCCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence            99999999999999999863 3332 3555554 79999999999999999853   345666 5688999999999999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc---
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---  366 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---  366 (479)
                      ||||+|||+..+.          .+..|..||++|+.||++.....++..+|.  ..+++++++++|+++.++...|   
T Consensus       397 ~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~  464 (561)
T PRK13748        397 HIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGIET  464 (561)
T ss_pred             CEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHHHHcCCCe
Confidence            9999999998653          356788999999999997654345566774  4578899999999875432111   


Q ss_pred             --------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 --------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 --------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                              +       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.+.+
T Consensus       465 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  544 (561)
T PRK13748        465 DSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKL  544 (561)
T ss_pred             EEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHH
Confidence                    1       01234666555  589999999999999998 56899999999999999999999999987655


Q ss_pred             C
Q 011700          429 K  429 (479)
Q Consensus       429 ~  429 (479)
                      .
T Consensus       545 ~  545 (561)
T PRK13748        545 A  545 (561)
T ss_pred             H
Confidence            3

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=5.7e-48  Score=396.95  Aligned_cols=392  Identities=18%  Similarity=0.212  Sum_probs=282.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC---------CCCCCC--------Cc
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE---------APARLP--------SF   65 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~---------~~~~~~--------~~   65 (479)
                      ++|||||||||++||..|++.|.+   |+|||+++..  +.++.|+ +|.++...         ....++        .+
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~   78 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW   78 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence            899999999999999999999987   9999997542  1222222 22221100         000000        00


Q ss_pred             ccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCC
Q 011700           66 HTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDA  138 (479)
Q Consensus        66 ~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~  138 (479)
                      .....      ..........+++.+++++.+ ++..++.....+...++ ++++||+||||||++|+.|++   ++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~---~~~~~  154 (458)
T PRK06912         79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPF---APFDG  154 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCC---CCCCC
Confidence            00000      000011223455679999988 55555544444444444 479999999999999987776   44443


Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700          139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG  218 (479)
Q Consensus       139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G  218 (479)
                      ..+++..+   +..+    .. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|+++|
T Consensus       155 ~~v~~~~~---~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G  225 (458)
T PRK06912        155 KWIINSKH---AMSL----PS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG  225 (458)
T ss_pred             CeEEcchH---HhCc----cc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence            44443322   2221    11 4789999999999999999999999999999999999886 79999999999999999


Q ss_pred             cEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh---hcccccccCcEEEcCcccCCCCCeEE
Q 011700          219 VKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQSSNSSVYA  293 (479)
Q Consensus       219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i~Vd~~l~t~~~~IyA  293 (479)
                      |++++++++++++.+ +.. ..+.. ++  +++++|.|++++|++|+++.+   ..++..++++|.||+++||+.|+|||
T Consensus       226 I~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA  302 (458)
T PRK06912        226 VKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA  302 (458)
T ss_pred             CEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence            999999999999762 322 22332 34  369999999999999999753   23455545569999999999999999


Q ss_pred             EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc-------
Q 011700          294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------  366 (479)
Q Consensus       294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~-------  366 (479)
                      +|||+..+          +.+..|..||+.|+.++.+.....++..+|...  +++.+++.+|+++.++...+       
T Consensus       303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~a~~~g~~~~~~~  370 (458)
T PRK06912        303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQAREQYGDIRIGE  370 (458)
T ss_pred             EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHHHHHCCCCeEEEE
Confidence            99999754          457789999999999999765434567788633  56888999999876442111       


Q ss_pred             ----cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 ----NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 ----~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                          ..       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.+
T Consensus       371 ~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  446 (458)
T PRK06912        371 FPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHE  446 (458)
T ss_pred             EecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHH
Confidence                00       0133555554  689999999999999998 56899999999999999999889998886654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=1.5e-47  Score=395.35  Aligned_cols=399  Identities=19%  Similarity=0.238  Sum_probs=285.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcC-------CCC--CCCCCCccc-ccccCCCC----CCCC-CCc
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISE-------EPV--APYERPALS-KGYLLPEA----PARL-PSF   65 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~-------~~~--~~~~~~~l~-~~~~~~~~----~~~~-~~~   65 (479)
                      |+++||++||||||||++||.++++.|.+   |+|||+       ...  .+.+..+++ +.++....    .... ..+
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~   77 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADH   77 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhc
Confidence            77789999999999999999999999987   899998       211  011112211 11110000    0000 000


Q ss_pred             ccccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEEC--CCcEEEeC--CCcEEEeceEEeecCCC
Q 011700           66 HTCVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADV--RRKTLVTA--TGETISYKILIIATGAR  124 (479)
Q Consensus        66 ~~~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~~~v~~~--~g~~~~~d~lviAtG~~  124 (479)
                      ......                 ........+++..+++++.+ ++..++.  +.++|.+.  ++++++||+||||||++
T Consensus        78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~  156 (475)
T PRK06327         78 GIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSE  156 (475)
T ss_pred             CccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCC
Confidence            000000                 00011233455679999987 4555552  35667664  34589999999999999


Q ss_pred             cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCH
Q 011700          125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP  204 (479)
Q Consensus       125 ~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~  204 (479)
                      |+.+|..  + .+...+++..   +...+    . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++
T Consensus       157 p~~~p~~--~-~~~~~~~~~~---~~~~~----~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~  224 (475)
T PRK06327        157 PRHLPGV--P-FDNKIILDNT---GALNF----T-EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADE  224 (475)
T ss_pred             CCCCCCC--C-CCCceEECcH---HHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCH
Confidence            9765432  2 2222333222   22111    1 14799999999999999999999999999999999998886 799


Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecCCCCChhhh---hccccc-ccC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKG  276 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g  276 (479)
                      ++.+.+.+.|+++||++++++.|.+++.+ ++.+ .+.+.+  |  +++++|.|++++|++|+++++   ..++.. ++|
T Consensus       225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G  302 (475)
T PRK06327        225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERG  302 (475)
T ss_pred             HHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCC
Confidence            99999999999999999999999999873 3333 344443  3  479999999999999999843   234555 568


Q ss_pred             cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeec
Q 011700          277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG  356 (479)
Q Consensus       277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G  356 (479)
                      +|.||+++||+.|+|||+|||+..+          ..+..|..||+.||+||++.....++..+|...  +++.+++.+|
T Consensus       303 ~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vG  370 (475)
T PRK06327        303 FIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVG  370 (475)
T ss_pred             eEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEe
Confidence            8999999999999999999999754          346789999999999999765445677788744  5788999999


Q ss_pred             CCCceEEEEc-----------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH
Q 011700          357 DNVGEVVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL  415 (479)
Q Consensus       357 ~~~~~~~~~~-----------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~  415 (479)
                      +++.++...|           +.       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++
T Consensus       371 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~  450 (475)
T PRK06327        371 KTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARI  450 (475)
T ss_pred             CCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC
Confidence            9876542111           00       1134555554  589999999999999988 5689999999999999999


Q ss_pred             hhcCCCcccccCCC
Q 011700          416 ETQGLGFALAVSQK  429 (479)
Q Consensus       416 ~~~~~~~a~~~~~~  429 (479)
                      +..||++++.+...
T Consensus       451 ~~~hPt~~e~~~~~  464 (475)
T PRK06327        451 CHAHPTLSEVWHEA  464 (475)
T ss_pred             CcCCCChHHHHHHH
Confidence            98999998876543

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=3.9e-47  Score=392.36  Aligned_cols=394  Identities=18%  Similarity=0.182  Sum_probs=281.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCC--------C-CCCC----CCCcc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLP--------E-APAR----LPSFH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~--------~-~~~~----~~~~~   66 (479)
                      ++|++|||+||||+++|..|+++|.+   |++||+++..   +.++.|. ++.++..        . ....    .|.+.
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~   92 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSID   92 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccC
Confidence            58999999999999999999999987   9999987321   1122222 2211110        0 0000    01100


Q ss_pred             cc--cC------Cccc-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCCC
Q 011700           67 TC--VG------ANEE-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        67 ~~--~~------~~~~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                      ..  ..      .... ......++.. +++++.+. ..-++.....|...++  +++.||+||||||++|+.|++   +
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i---~  168 (479)
T PRK14727         93 RGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPI---P  168 (479)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCC---C
Confidence            00  00      0000 0122333433 89999884 4444443334444555  369999999999999998887   5


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      |.+....+.  + .+  .+..   ...+++++|||+|++|+|+|..|.++|.+||++.+. ++++. +++++.+.+.+.|
T Consensus       169 G~~~~~~~~--~-~~--~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L  238 (479)
T PRK14727        169 GLMDTPYWT--S-TE--ALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACF  238 (479)
T ss_pred             CcCccceec--c-hH--Hhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHH
Confidence            543222222  1 11  1111   124799999999999999999999999999999875 66775 7999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                      ++.||++++++++++++.++ +. ..+.+.++ ++++|.|++++|++||+.++   ..++.. ++|+|.||+++||++|+
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~-~~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~  315 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDD-NG-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPD  315 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeC-CE-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCC
Confidence            99999999999999998633 32 23555554 69999999999999999853   235655 56889999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEEE-----
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-----  365 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-----  365 (479)
                      |||+|||+..+.          .+..|..||+.|+.||++.....++..+|+  ..+++++++++|+++.++...     
T Consensus       316 IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~--~~~~~p~ia~vGlte~~a~~~g~~~~  383 (479)
T PRK14727        316 IYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPA--VIFTDPQVATVGLSEAKAHLSGIETI  383 (479)
T ss_pred             EEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCc--EEEecCceeeeeCCHHHHHHcCCceE
Confidence            999999998653          356788999999999998654455666775  457889999999987654211     


Q ss_pred             ------ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          366 ------GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       366 ------~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                            .+.       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++...||+++|.+.+.
T Consensus       384 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~  463 (479)
T PRK14727        384 SRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLC  463 (479)
T ss_pred             EEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHH
Confidence                  110       0134566554  689999999999999998 568999999999999999999999999876544

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=5.6e-47  Score=388.16  Aligned_cols=390  Identities=20%  Similarity=0.260  Sum_probs=281.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCC----CCCCCCccc--------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEA----PARLPSFHT--------   67 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~----~~~~~~~~~--------   67 (479)
                      ++||+||||+||||..||..  ..|.+   |+|||++...  +-++.|+ +|.++....    ......+..        
T Consensus         1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d   75 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR   75 (452)
T ss_pred             CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence            46999999999999998654  35777   9999987531  2222222 222221000    000000100        


Q ss_pred             ------ccCC----cccCCCHhHH---HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCC
Q 011700           68 ------CVGA----NEERLTPKWY---NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        68 ------~~~~----~~~~~~~~~~---~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                            ....    ........+.   ++.|++++.++.++.   +.++|.+.++++++||+||||||++|..|+..   
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~---  149 (452)
T TIGR03452        76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPAI---  149 (452)
T ss_pred             HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCCC---
Confidence                  0000    0000011121   237999999865553   67888887888899999999999999887642   


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      +.+  ++. +.+..++..+..     .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       150 ~~~--~~~-~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~  220 (452)
T TIGR03452       150 ADS--GVR-YHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA  220 (452)
T ss_pred             CCC--CCE-EEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH
Confidence            211  222 234445544322     3799999999999999999999999999999999988875 7999998887755


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh---ccccc-ccCcEEEcCcccCCCCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~---~~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                       +.+|++++++.+++++.+ ++.+ .+.+.+|+++++|.|++++|++|+++++.   .++.. ++|+|.||+++||++|+
T Consensus       221 -~~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~  297 (452)
T TIGR03452       221 -KKKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARG  297 (452)
T ss_pred             -hcCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCC
Confidence             468999999999999863 3333 46677888999999999999999998753   35666 56889999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEeecCcceEeecCCCceEEEEc--
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--  366 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--  366 (479)
                      |||+|||+..+          +....|.+||+++++||++...  ..++..+|..  .+++++++++|+++.++...|  
T Consensus       298 IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~--i~t~p~ia~vGlte~ea~~~g~~  365 (452)
T TIGR03452       298 VWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSA--VFTHPQIATVGLTEQEAREAGHD  365 (452)
T ss_pred             EEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeE--EECCCCeeeeeCCHHHHHhcCCC
Confidence            99999999854          3456789999999999997642  3566678864  457889999999886552211  


Q ss_pred             ------c----------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700          367 ------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV  426 (479)
Q Consensus       367 ------~----------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~  426 (479)
                            .          .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.++ ...||+++|.+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~  445 (452)
T TIGR03452       366 ITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVV  445 (452)
T ss_pred             eEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHH
Confidence                  0          01134555554  689999999999999988 5689999999999999986 56788887654


Q ss_pred             C
Q 011700          427 S  427 (479)
Q Consensus       427 ~  427 (479)
                      .
T Consensus       446 ~  446 (452)
T TIGR03452       446 E  446 (452)
T ss_pred             H
Confidence            3

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8.9e-48  Score=354.58  Aligned_cols=394  Identities=19%  Similarity=0.232  Sum_probs=294.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC---CCCCCCcccccccCCCC-----C-----C-----CCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV---APYERPALSKGYLLPEA-----P-----A-----RLPS   64 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~---~~~~~~~l~~~~~~~~~-----~-----~-----~~~~   64 (479)
                      ++||++|||||.+|+.+|+.+++.|.+   +.|+|..-.   .+-++.|.++..++...     .     .     ..+.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~   95 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS   95 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence            369999999999999999999999988   788887621   12233344433332110     0     0     1111


Q ss_pred             cccccCCc----ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccccccCCC
Q 011700           65 FHTCVGAN----EERL----TPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        65 ~~~~~~~~----~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                      |.+..-.+    ...+    ++..+.+.+|+++.+ ...-+++.+-.|...++.  .+++.+++||||++|..|.+||.+
T Consensus        96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E  174 (478)
T KOG0405|consen   96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAE  174 (478)
T ss_pred             CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchh
Confidence            11110000    0011    122234568999988 444455666667776763  378999999999999999874322


Q ss_pred             -CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       135 -g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                       |.+++..|      ++++        .|+|++|||+||+++|+|..|+.+|.+++++.|.+.+|.. ||+.+++.+.+.
T Consensus       175 ~gidSDgff------~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~  239 (478)
T KOG0405|consen  175 LGIDSDGFF------DLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEH  239 (478)
T ss_pred             hcccccccc------chhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHH
Confidence             23333333      2222        4899999999999999999999999999999999999886 999999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNS  289 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~  289 (479)
                      |+.+||++|.++.++++....++... +....++...+|.++||+|+.|++.-+   +.++.+ .+|.|.||+|.+||+|
T Consensus       240 ~~~~ginvh~~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp  318 (478)
T KOG0405|consen  240 LEGRGINVHKNSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVP  318 (478)
T ss_pred             hhhcceeecccccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCC
Confidence            99999999999999999886566443 444556556699999999999999743   456777 6899999999999999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEeecC-cceEeecCCCceEEE-E
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFT-LSWQFYGDNVGEVVH-Y  365 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~-~~~~~~G~~~~~~~~-~  365 (479)
                      +||++||+++.-          .+.+.|+.+|+..++.+++..  ...+|..+|.   .+|. .++..+|++++|++. +
T Consensus       319 ~I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~igtVGLtE~EAieky  385 (478)
T KOG0405|consen  319 SIWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPPIGTVGLTEEEAIEKY  385 (478)
T ss_pred             ceEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCCcccccCCHHHHHHHh
Confidence            999999999854          456788999999999999843  3368889995   4444 457899999987753 2


Q ss_pred             ccCC-------------------CCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700          366 GNFS-------------------GTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA  423 (479)
Q Consensus       366 ~~~~-------------------~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a  423 (479)
                      |..+                   .+.+.++.+  ++.+++|+|++|+...|+ +.++.|+++|+|..|++.+..+||+-|
T Consensus       386 g~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSA  465 (478)
T KOG0405|consen  386 GKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSA  465 (478)
T ss_pred             CccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCH
Confidence            2111                   122334444  799999999999988887 789999999999999999999999999


Q ss_pred             cccCCC
Q 011700          424 LAVSQK  429 (479)
Q Consensus       424 ~~~~~~  429 (479)
                      |+|-+.
T Consensus       466 EElVTm  471 (478)
T KOG0405|consen  466 EELVTM  471 (478)
T ss_pred             HHheec
Confidence            998665

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=6.8e-47  Score=390.24  Aligned_cols=394  Identities=22%  Similarity=0.254  Sum_probs=277.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCC----CCCCCCCcccc------c
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPE----APARLPSFHTC------V   69 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~----~~~~~~~~~~~------~   69 (479)
                      ++||+|||||||||++||.+|++.|.+   |+|||++...  +.++.|+ ++.++...    .....+.+...      .
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~   78 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID   78 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence            569999999999999999999999987   9999995321  1111111 11111100    00000111000      0


Q ss_pred             CCcc-----------cCCC-HhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC
Q 011700           70 GANE-----------ERLT-PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD  137 (479)
Q Consensus        70 ~~~~-----------~~~~-~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~  137 (479)
                      ....           .... ...++..+++++.+ .+..++  .+++.+ ++++++||+||||||++  .|+++|.....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~--~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~  152 (460)
T PRK06292         79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVD--PNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL  152 (460)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEcc--CCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence            0000           0111 22345568888876 344333  345555 66789999999999999  34443322112


Q ss_pred             CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700          138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK  217 (479)
Q Consensus       138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  217 (479)
                      ...+++..   +...+    .. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+++.|+++
T Consensus       153 ~~~~~~~~---~~~~~----~~-~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~  223 (460)
T PRK06292        153 GDRLLTSD---DAFEL----DK-LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE  223 (460)
T ss_pred             CCcEECch---HHhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence            23344332   22211    11 4799999999999999999999999999999999998885 8999999999999999


Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                       |++++++.+.+++.+++..+ .+.+.++  +++++|.|++++|++|+++++   ..++.. ++|.|.||+++||++|+|
T Consensus       224 -I~i~~~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I  301 (460)
T PRK06292        224 -FKIKLGAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI  301 (460)
T ss_pred             -cEEEcCCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence             99999999999986322122 2333333  579999999999999999843   335555 568899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEeecCcceEeecCCCceEEEEc----
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG----  366 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~----  366 (479)
                      ||+|||+..+          ..+..|..||+.||.||++. .....+..+|+  ..+++++++++|+++.++...|    
T Consensus       302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~~~~  369 (460)
T PRK06292        302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVAGGVRYHPIPS--VVFTDPQIASVGLTEEELKAAGIDYV  369 (460)
T ss_pred             EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCCCCcCCCCCCe--EEECCCccEEeECCHHHHHhcCCCeE
Confidence            9999999754          34678999999999999974 32345566775  4466888999999876542211    


Q ss_pred             -------cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 -------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 -------~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                             ..       ....|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  448 (460)
T PRK06292        370 VGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRT  448 (460)
T ss_pred             EEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHH
Confidence                   00       1134555554  579999999999999998 66899999999999999999889998887654

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=100.00  E-value=1.5e-45  Score=376.71  Aligned_cols=389  Identities=23%  Similarity=0.306  Sum_probs=301.8

Q ss_pred             HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhHHHHcCcEEEeCceEEE
Q 011700           18 YAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKWYNEHGIELVLGTRVKS   96 (479)
Q Consensus        18 ~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~~~v~~   96 (479)
                      +||.+|+++. +..+|+|||+++.+.|....++. +.....  ..+       ....... ..++.+.|++++.+++|+.
T Consensus         1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~--~~~-------~~~~~~~~~~~~~~~gv~~~~~~~V~~   69 (427)
T TIGR03385         1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPY-VIGGVI--DDR-------NKLLAYTPEVFIKKRGIDVKTNHEVIE   69 (427)
T ss_pred             CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCe-Eecccc--CCH-------HHcccCCHHHHHHhcCCeEEecCEEEE
Confidence            4788998864 45679999999876554322211 110000  000       0001222 3455888999988889999


Q ss_pred             EECCCcEEEeCC---CcEEE--eceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCC
Q 011700           97 ADVRRKTLVTAT---GETIS--YKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG  171 (479)
Q Consensus        97 i~~~~~~v~~~~---g~~~~--~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG  171 (479)
                      ++++++++.+.+   ++++.  ||+||||||++|..|++   +|.+.+++++.+++.++..++..+....+++++|||+|
T Consensus        70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i---~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  146 (427)
T TIGR03385        70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNI---EGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG  146 (427)
T ss_pred             EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCC---CCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            999988887753   35677  99999999999988876   66666778999999998888887755568999999999


Q ss_pred             hHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEec
Q 011700          172 YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT  251 (479)
Q Consensus       172 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~  251 (479)
                      ++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.|+++||++++++.+.+++.  ++.+  +.+.+|+++++
T Consensus       147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~  222 (427)
T TIGR03385       147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA  222 (427)
T ss_pred             HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence            9999999999999999999999988854458899999999999999999999999999975  3333  45678889999


Q ss_pred             cEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          252 DMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       252 D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      |.+++++|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+++|+||.
T Consensus       223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~  302 (427)
T TIGR03385       223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA  302 (427)
T ss_pred             CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence            999999999999987764 5665 56889999999999999999999998876655555455688899999999999999


Q ss_pred             CCCCCCCCC-CCCeEEEeecCcceEeecCCCceEEEEc---------cCC--------CCceEEEEc--cCCEEEEEEEe
Q 011700          330 EPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVGEVVHYG---------NFS--------GTTFGAYWV--NKGRLVGSFLE  389 (479)
Q Consensus       330 ~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~~~~~~---------~~~--------~~~~~~~~~--~~~~i~G~~~~  389 (479)
                      +..  ..+. ..+...+.+++++++++|+++.++...|         ...        ...|.++.+  ++++|||+|++
T Consensus       303 g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~  380 (427)
T TIGR03385       303 GND--IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAV  380 (427)
T ss_pred             CCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEE
Confidence            864  3443 2345567788999999999775432111         010        123555554  57999999999


Q ss_pred             CCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          390 GGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       390 g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      |++ +.|+ +.++.||++++|++||.++.   +.|.|+|.+.
T Consensus       381 g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p~~~~~  419 (427)
T TIGR03385       381 GKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAYAPPYSRV  419 (427)
T ss_pred             ccccHHHHHHHHHHHHHCCCCHHHHhhcc---cccCCCCCCc
Confidence            999 8887 66899999999999999887   7788888754

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=4.8e-46  Score=384.22  Aligned_cols=394  Identities=22%  Similarity=0.279  Sum_probs=279.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccCCCCC-C---CCCCcccccCC------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLLPEAP-A---RLPSFHTCVGA------   71 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~~~~~-~---~~~~~~~~~~~------   71 (479)
                      |||+||||||||++||.+|+++|.+   |+|||+....  +.+..+. ++.++..... .   ....+......      
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE   78 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence            8999999999999999999999987   9999984321  1122222 1111110000 0   00000000000      


Q ss_pred             -----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700           72 -----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAE  139 (479)
Q Consensus        72 -----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~  139 (479)
                                 ........++++.+++++.+ ++..++.....+...++ .+++||+||||||++|+.|+++ + +.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~-~-~~~~~  155 (461)
T TIGR01350        79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGP-F-DFDGE  155 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCC-C-CCCCc
Confidence                       00011123455678999988 45555544334443343 4799999999999999887762 0 22222


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV  219 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  219 (479)
                      .++   +..+...+    .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus       156 ~~~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi  226 (461)
T TIGR01350       156 VVI---TSTGALNL----KE-VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGV  226 (461)
T ss_pred             eEE---cchHHhcc----cc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCC
Confidence            233   33333222    11 4789999999999999999999999999999999998885 899999999999999999


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChh--hhh-ccccc-ccCcEEEcCcccCCCCCeEE
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKGGIKVTGRLQSSNSSVYA  293 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g~i~Vd~~l~t~~~~IyA  293 (479)
                      ++++++.+.+++.+ ++.+ .+.+.+|  +++++|.|++++|++|++.  +++ .++.. .+|.|.||+++||+.|+|||
T Consensus       227 ~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iya  304 (461)
T TIGR01350       227 KILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYA  304 (461)
T ss_pred             EEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEE
Confidence            99999999999863 3433 3555666  5799999999999999998  333 34555 56889999999999999999


Q ss_pred             EeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecCcceEeecCCCceEEEE-------
Q 011700          294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-------  365 (479)
Q Consensus       294 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-------  365 (479)
                      +|||+..+          ..+..|..||+.+|+||.+... ..++...|.  ..+++.+++.+|+++.++...       
T Consensus       305 iGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~--~~~~~~~~a~vG~~~~~a~~~g~~~~~~  372 (461)
T TIGR01350       305 IGDVIGGP----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVPS--CIYTDPEVASVGLTEEQAKEAGYDVKIG  372 (461)
T ss_pred             eeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCe--EEecCCceEEEeCCHHHHHhCCCCeEEE
Confidence            99999754          4577899999999999997653 234445564  556788899999876543211       


Q ss_pred             ----ccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          366 ----GNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       366 ----~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                          .+.       ....|.++.+  ++++|||+|++|+++.|+ +.++.||++++|++||.++...||++++.+.
T Consensus       373 ~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~  448 (461)
T TIGR01350       373 KFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIK  448 (461)
T ss_pred             EEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHH
Confidence                110       1134555444  589999999999999887 6689999999999999998877777776543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=100.00  E-value=1.7e-45  Score=371.36  Aligned_cols=388  Identities=25%  Similarity=0.352  Sum_probs=324.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      .+.++||||.|++|..+..++.+...+...|+++-.+++..|+|.+++..+.......           +......+|++
T Consensus         2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~e-----------di~l~~~dwy~   70 (793)
T COG1251           2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAE-----------DISLNRNDWYE   70 (793)
T ss_pred             CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHH-----------HHhccchhhHH
Confidence            3478999999999999999999955445679999999999999999876543322221           12245678999


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +++|+++.+.+|+.||++++.|+++.|+++.||+||+||||.|++||+   ||.+.+.++..++++|...+.+..+  ..
T Consensus        71 ~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~Pi---PG~~~~~v~~~R~i~D~~am~~~ar--~~  145 (793)
T COG1251          71 ENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPI---PGSDLPGVFVYRTIDDVEAMLDCAR--NK  145 (793)
T ss_pred             HcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCC---CCCCCCCeeEEecHHHHHHHHHHHh--cc
Confidence            999999999999999999999999999999999999999999999997   8999999999999999999988744  35


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  242 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~  242 (479)
                      ++.+|||+|..|+|+|..|...|.++++++..+.++.+.+|+...+.+++.++++|++++++....++..  ++++..+.
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr  223 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVR  223 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEe
Confidence            6789999999999999999999999999999999999989999999999999999999999988888865  67788999


Q ss_pred             eCCCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHH
Q 011700          243 LRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA  321 (479)
Q Consensus       243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g  321 (479)
                      ++||+.+++|.|++|+|.+||+.+.... +..+. +|.||++||||+|+|||+|+|+.+....+      .++..+.+|+
T Consensus       224 ~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~  296 (793)
T COG1251         224 FADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQA  296 (793)
T ss_pred             ecCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHH
Confidence            9999999999999999999999998764 44444 89999999999999999999999876544      5677889999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCC----ceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHH
Q 011700          322 KHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYE  397 (479)
Q Consensus       322 ~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~  397 (479)
                      +++|.++.+......-..++...-.+....+.+.|...    .+.+.+.|.....|.++.+++++|+|+.++|+. .+-.
T Consensus       297 ~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt-~d~~  375 (793)
T COG1251         297 KVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVLYGDT-SDGG  375 (793)
T ss_pred             HHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEEEeec-ccch
Confidence            99999999876432222233333344455555566432    345666676667899999999999999999964 4456


Q ss_pred             HHHHHHHcCCCcCcHHHHh
Q 011700          398 AIAKATRLQPVVEDLAELE  416 (479)
Q Consensus       398 ~~~~~i~~~~~~~dl~~~~  416 (479)
                      .+..+|..+..++++.+..
T Consensus       376 ~l~~li~~~~~~se~r~~l  394 (793)
T COG1251         376 WLLDLILKGADISEIRDTL  394 (793)
T ss_pred             HHHHHHhcCCCccccchhh
Confidence            6778899999998877654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.3e-46  Score=346.10  Aligned_cols=398  Identities=21%  Similarity=0.272  Sum_probs=292.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCcc-cccccCCCCCC------CCCCcccccCC-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPAL-SKGYLLPEAPA------RLPSFHTCVGA-   71 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~l-~~~~~~~~~~~------~~~~~~~~~~~-   71 (479)
                      .+||++|||+||+|..||+.++++|++   .+.||++...   +.+..|+ ++.++......      .+..+...... 
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~  114 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV  114 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence            369999999999999999999999999   5888886542   1222222 33333221100      00000000000 


Q ss_pred             ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700           72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                                      .....+...+++.+|+++.+.. .-+++..-.+.-.+|  ..+.++++|||||+.-.  +.||+
T Consensus       115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~~PGI  191 (506)
T KOG1335|consen  115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--PFPGI  191 (506)
T ss_pred             ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--CCCCe
Confidence                            0011233456778899998843 334444333444444  57899999999999532  33222


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      . .|.+.+.+.+....+.+        -|++++|||+|++|+|++..+.++|.+||+++-.+.+.+. +|.+++..+++.
T Consensus       192 ~-IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~  261 (506)
T KOG1335|consen  192 T-IDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRV  261 (506)
T ss_pred             E-ecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHH
Confidence            2 23445555554444333        4899999999999999999999999999999999999886 899999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l  284 (479)
                      |+++|++|++++++...+.+.||.+ .+++.+   +  ++++||.+++++||+|.+.-+   +-++.. ..+.|.||.++
T Consensus       262 L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f  340 (506)
T KOG1335|consen  262 LQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRF  340 (506)
T ss_pred             HHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccc
Confidence            9999999999999999998777744 455543   2  479999999999999999743   345555 57889999999


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEEE
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH  364 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~  364 (479)
                      +|.+|+||++|||...|+.          +..|..||..+.+.|.+.....+|..+|...+  ...+++.+|.+++++..
T Consensus       341 ~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~~hv~ynciP~v~y--thPEvawVG~TEeqlke  408 (506)
T KOG1335|consen  341 QTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVY--THPEVAWVGKTEEQLKE  408 (506)
T ss_pred             cccCCceEEecccCCcchh----------hhhhhhhchhheeeecccCcccccCCCCceee--cccceeeeccchhhHHh
Confidence            9999999999999999864          55788899999999998876678888995432  23446778988765321


Q ss_pred             ------Ec------------cCCCCceEEEE--ccCCEEEEEEEeCCCHHHHHH-HHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700          365 ------YG------------NFSGTTFGAYW--VNKGRLVGSFLEGGTKEEYEA-IAKATRLQPVVEDLAELETQGLGFA  423 (479)
Q Consensus       365 ------~~------------~~~~~~~~~~~--~~~~~i~G~~~~g~~~~e~~~-~~~~i~~~~~~~dl~~~~~~~~~~a  423 (479)
                            .|            +.+...|.+..  .+++||||+||+||+|+|+++ ...||..|.+.+|+++....||++.
T Consensus       409 egi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlS  488 (506)
T KOG1335|consen  409 EGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLS  488 (506)
T ss_pred             cCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHH
Confidence                  11            11124455543  389999999999999999955 7899999999999999999999999


Q ss_pred             cccCCC
Q 011700          424 LAVSQK  429 (479)
Q Consensus       424 ~~~~~~  429 (479)
                      |.|.++
T Consensus       489 Ea~kEa  494 (506)
T KOG1335|consen  489 EAFKEA  494 (506)
T ss_pred             HHHHHH
Confidence            998876

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=5.8e-41  Score=328.26  Aligned_cols=301  Identities=25%  Similarity=0.350  Sum_probs=243.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++++||||||.+|+.+|..|.+.. ++.+|++||+.+++.|. |.+..-..     ..++.      ......+...+++
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~------~~i~~p~~~~~~~   69 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSE------SEIAIPLRALLRK   69 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCCh------hheeccHHHHhcc
Confidence            479999999999999999999975 35679999999987764 33321111     00000      1112345666774


Q ss_pred             c-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700           84 H-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS---  159 (479)
Q Consensus        84 ~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~---  159 (479)
                      . +++++++ +|++||+++++|.+.+++.+.||+||||+|+.+..+.+   ||.. ++.+.+++++|+.++++.+..   
T Consensus        70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi---~G~~-E~a~~lks~edA~~ir~~l~~~fe  144 (405)
T COG1252          70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGI---PGAA-EYAFGLKTLEDALRLRRHLLEAFE  144 (405)
T ss_pred             cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCC---CCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence            4 4999998 89999999999999998889999999999999876655   7743 678899999999998887751   


Q ss_pred             ----CCC----CCEEEECCChHHHHHHHHHhhC-------------CCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700          160 ----CSG----GNAVVIGGGYIGMECAASLVIN-------------KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG  218 (479)
Q Consensus       160 ----~~~----~~vvVIGgG~~g~E~A~~l~~~-------------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G  218 (479)
                          .+.    .+++|+|+|++|+|+|.+|.++             ..+|+++++.+++||. +++++++..++.|+++|
T Consensus       145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G  223 (405)
T COG1252         145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG  223 (405)
T ss_pred             HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence                112    2699999999999999998753             1389999999999996 89999999999999999


Q ss_pred             cEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCCChhhhh-ccccc-ccCcEEEcCcccC-CCCCeEEE
Q 011700          219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAV  294 (479)
Q Consensus       219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p~~~l~~-~~~~~-~~g~i~Vd~~l~t-~~~~IyA~  294 (479)
                      |++++++.|+++++  +    .|.+++|. +|++|.++|++|.+++....+ .+.+. ..|++.||++||+ ++|+|||+
T Consensus       224 V~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~  297 (405)
T COG1252         224 VEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA  297 (405)
T ss_pred             CEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence            99999999999976  3    47788887 599999999999999987665 35554 4699999999998 89999999


Q ss_pred             eeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          295 GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       295 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                      |||+..+..    .+.++.++.|.+||..+++||.....
T Consensus       298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~  332 (405)
T COG1252         298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK  332 (405)
T ss_pred             eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence            999987753    22347789999999999999986543

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=9.6e-40  Score=332.49  Aligned_cols=298  Identities=20%  Similarity=0.276  Sum_probs=232.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ++++|||||||+||+.+|..|.+.+   .+|+|||+++++.|. |.++. +.....  ..        ......+...++
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~---~~ItlI~~~~~~~~~-~~l~~-~~~g~~--~~--------~~~~~~~~~~~~   73 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKK---YNITVISPRNHMLFT-PLLPQ-TTTGTL--EF--------RSICEPVRPALA   73 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCC---CeEEEEcCCCCcchh-hhHHH-hcccCC--Ch--------HHhHHHHHHHhc
Confidence            4579999999999999999886533   459999999877663 44332 111100  00        000112344456


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEe----------CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVT----------ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANR  152 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~----------~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~  152 (479)
                      .++++++.+ +|++||++++++.+          .++.+++||+||||||++|..+++   ||.+ ++++.++++.++.+
T Consensus        74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~i---pG~~-e~~~~~~~~~~a~~  148 (424)
T PTZ00318         74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNI---PGVE-ERAFFLKEVNHARG  148 (424)
T ss_pred             cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCC---CCHH-HcCCCCCCHHHHHH
Confidence            678999886 89999999999887          456789999999999999987776   6654 36778888888888


Q ss_pred             HHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhh--------------CCCeEEEEeecCccccccCC
Q 011700          153 LVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI--------------NKINVTMVFPEAHCMARLFT  203 (479)
Q Consensus       153 l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~--------------~g~~Vtlv~~~~~~l~~~~~  203 (479)
                      +++.+.++               ..++++|||+|++|+|+|..|..              .+.+|+++++.+++++. ++
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~  227 (424)
T PTZ00318        149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD  227 (424)
T ss_pred             HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence            77655321               12489999999999999999875              37899999999999985 89


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTG  282 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~  282 (479)
                      +++.+.+++.|+++||+++++++|++++.  +    .+.+++|+++++|.+++++|.+|+..+...++.. ++|+|.||+
T Consensus       228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~  301 (424)
T PTZ00318        228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD  301 (424)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence            99999999999999999999999999964  2    3668899999999999999999985433445555 578999999


Q ss_pred             ccc-CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          283 RLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       283 ~l~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      +|| |++|||||+|||+..+..     ...+.+..|.+||+.+|+||....
T Consensus       302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l  347 (424)
T PTZ00318        302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL  347 (424)
T ss_pred             CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence            999 599999999999986431     112567889999999999997653

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=1.4e-37  Score=311.53  Aligned_cols=297  Identities=22%  Similarity=0.295  Sum_probs=232.5

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG   85 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (479)
                      +|||||||+||+.+|.+|+++..+..+|+|||+++.++|.. .++ .++....    +      ..+......+++++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~-~~~~g~~----~------~~~~~~~~~~~~~~~g   68 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLP-GMIAGHY----S------LDEIRIDLRRLARQAG   68 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhh-HHHheeC----C------HHHhcccHHHHHHhcC
Confidence            58999999999999999976544566899999998877653 221 1111000    0      0111233456777889


Q ss_pred             cEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc-----C
Q 011700           86 IELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----C  160 (479)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~-----~  160 (479)
                      ++++.+ +|..+|+++++|.+.++++++||+||||||++|..|++   || ..++++.+++++++....+.+..     .
T Consensus        69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (364)
T TIGR03169        69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGV---EG-AADLAVPVKPIENFLARWEALLESADAPP  143 (364)
T ss_pred             CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCC---Cc-ccccccccCCHHHHHHHHHHHHHHHhcCC
Confidence            999987 89999999999999999899999999999999998877   66 34677788888777664333321     1


Q ss_pred             CCCCEEEECCChHHHHHHHHHhh----CC--CeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  234 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~----~g--~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  234 (479)
                      .+++++|||+|++|+|+|..|.+    .|  .+|+++ +.+.+++. +++++.+.+.+.|+++||++++++.+++++.  
T Consensus       144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--  219 (364)
T TIGR03169       144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD--  219 (364)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence            35799999999999999999975    34  589999 66677765 7899999999999999999999999998853  


Q ss_pred             CCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccC-CCCCeEEEeeeccccccccCceeecc
Q 011700          235 NGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLE  312 (479)
Q Consensus       235 ~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~  312 (479)
                      +    .+.+.+|+++++|.+++++|.+|+..+...++.. ++|+|.||+++|| ++|+|||+|||+..+...     ..+
T Consensus       220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~  290 (364)
T TIGR03169       220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK  290 (364)
T ss_pred             C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence            2    4667888999999999999999998776666665 5789999999998 999999999999764321     114


Q ss_pred             cHHHHHHHHHHHHHHHcCCC
Q 011700          313 HVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~~~  332 (479)
                      ....|.+||+.+|+||....
T Consensus       291 ~~~~A~~~g~~~a~ni~~~l  310 (364)
T TIGR03169       291 AGVYAVRQAPILAANLRASL  310 (364)
T ss_pred             chHHHHHhHHHHHHHHHHHh
Confidence            56779999999999997543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=1.8e-36  Score=298.16  Aligned_cols=294  Identities=21%  Similarity=0.213  Sum_probs=208.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   81 (479)
                      +.+||+||||||||++||..|+++|++   +++||.......    +    ........+|.... ..+......+.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQ----L----TTTTEVENWPGDPNDLTGPLLMERMHEHA   73 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCc----e----ecCceECCCCCCCCCCCHHHHHHHHHHHH
Confidence            568999999999999999999999987   788885432110    0    00001112222111 00111112334455


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      ..++++++.+ .+..++...+.+.+. +...+.||+||||||+.|+.|+++|........++++..+....        .
T Consensus        74 ~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--------~  144 (321)
T PRK10262         74 TKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--------Y  144 (321)
T ss_pred             HHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH--------c
Confidence            5677787776 677788766664442 23478999999999999988877332211223444443332211        1


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|++|+|+|..|++.+.+|+++++.+.+.   .++.+.+.+.+.|++.||++++++.+++++. +++.+..
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~  220 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTG  220 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEE
Confidence            58999999999999999999999999999999987652   3677888889999999999999999999986 3334445


Q ss_pred             EEeCCC------cEEeccEEEEecCCCCChhhhhcccccccCcEEEcC-----cccCCCCCeEEEeeeccccccccCcee
Q 011700          241 VNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETR  309 (479)
Q Consensus       241 v~~~~g------~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~-----~l~t~~~~IyA~GD~~~~~~~~~g~~~  309 (479)
                      +.+.++      +++++|.|++++|++|++.+++.++..++|+|.||+     ++||++|+|||+|||+..+.       
T Consensus       221 v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~-------  293 (321)
T PRK10262        221 VRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY-------  293 (321)
T ss_pred             EEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc-------
Confidence            555432      379999999999999999988766666778999997     78999999999999997543       


Q ss_pred             ecccHHHHHHHHHHHHHHHc
Q 011700          310 RLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~  329 (479)
                        ..+..|+.+|..||..|.
T Consensus       294 --~~~~~A~~~g~~Aa~~~~  311 (321)
T PRK10262        294 --RQAITSAGTGCMAALDAE  311 (321)
T ss_pred             --ceEEEEehhHHHHHHHHH
Confidence              223346677777777664

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=1.4e-35  Score=289.14  Aligned_cols=285  Identities=25%  Similarity=0.308  Sum_probs=208.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWYNE   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   83 (479)
                      |||+|||||+||++||..|+++|++   |+|||+++..  .      .+........+|.+.. ..+......+.+.+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   69 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPG--G------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK   69 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCC--c------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence            6999999999999999999999887   9999987521  0      0111111112232211 1111222345566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      ++++++. ++|.+++++++  .+.+.++.++.||+||+|||+.|..|++   ||.+   ...+++...... .       
T Consensus        70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i---~g~~~~~~~~~~~~~~~~~-~-------  137 (300)
T TIGR01292        70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGI---PGEDEFLGRGVSYCATCDG-P-------  137 (300)
T ss_pred             cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCC---CChhhcCCccEEEeeecCh-h-------
Confidence            8999998 68999988765  4556677889999999999999887766   4432   233433332221 0       


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCc
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ...+++++|||+|++|+|+|..|.+.+.+|+++.+.+.+..   .+    .+.+.++++ ||++++++.+++++.  ++.
T Consensus       138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~  208 (300)
T TIGR01292       138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---EK----ILLDRLRKNPNIEFLWNSTVKEIVG--DNK  208 (300)
T ss_pred             hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---CH----HHHHHHHhCCCeEEEeccEEEEEEc--cCc
Confidence            11478999999999999999999999999999999876532   33    345566666 999999999999986  334


Q ss_pred             EEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700          238 VVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  311 (479)
Q Consensus       238 v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~  311 (479)
                      +..+.+.   ++  +++++|.+++++|++|+.++++..+.. ++|++.||+++||++|+|||+|||+....         
T Consensus       209 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~---------  279 (300)
T TIGR01292       209 VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY---------  279 (300)
T ss_pred             EEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------
Confidence            4445442   23  579999999999999999877655444 56899999999999999999999997321         


Q ss_pred             ccHHHHHHHHHHHHHHHcC
Q 011700          312 EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..+..|+.||+.||.+|..
T Consensus       280 ~~~~~A~~~g~~aa~~i~~  298 (300)
T TIGR01292       280 RQAVTAAGDGCIAALSAER  298 (300)
T ss_pred             hhhhhhhhhHHHHHHHHHh
Confidence            4577899999999999863

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=4.9e-36  Score=312.02  Aligned_cols=290  Identities=24%  Similarity=0.326  Sum_probs=209.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+||||||||++||.+|++.|++   |+||++....   .+...      ....+++......+......+.+++++
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~GG---~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~~  279 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERIGG---QVKDT------VGIENLISVPYTTGSQLAANLEEHIKQ  279 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC---ccccC------cCcccccccCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999988   8899753211   00000      001111111111112222344566777


Q ss_pred             cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700           84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS  161 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~  161 (479)
                      ++++++.+++|..++.+.  ..+.+.+++.+.||++|+|||++|+.|+++|........++++......      +  ..
T Consensus       280 ~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~  351 (515)
T TIGR03140       280 YPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP------F--FK  351 (515)
T ss_pred             hCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh------h--cC
Confidence            899999998999998765  4556677788999999999999988777633211122345444332211      1  14


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      +++++|||+|++|+|+|..|++.+.+||++++.+.+..       ...+.+.+++ +||++++++.+++++. +++++..
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~  423 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTG  423 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEE
Confidence            78999999999999999999999999999998876532       2345666665 6999999999999986 3456666


Q ss_pred             EEeCC---C--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700          241 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  314 (479)
Q Consensus       241 v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  314 (479)
                      +.+.+   +  +++++|.|++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.         ..+
T Consensus       424 v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~~  494 (515)
T TIGR03140       424 IRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY---------KQI  494 (515)
T ss_pred             EEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc---------ceE
Confidence            76643   2  469999999999999999988755555 56889999999999999999999998654         223


Q ss_pred             HHHHHHHHHHHHHHcC
Q 011700          315 DSARKSAKHAVAAIME  330 (479)
Q Consensus       315 ~~A~~~g~~aa~~i~~  330 (479)
                      ..|+.+|..||.+|..
T Consensus       495 ~~A~~~G~~Aa~~i~~  510 (515)
T TIGR03140       495 IIAMGEGAKAALSAFD  510 (515)
T ss_pred             EEEEccHHHHHHHHHH
Confidence            4577888888888754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.2e-35  Score=278.66  Aligned_cols=287  Identities=27%  Similarity=0.324  Sum_probs=216.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   81 (479)
                      +.+||+|||||||||+||.+++|.+++.  ++|+|+.....+        +.......++|++.. ..+........++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a   71 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA   71 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence            4699999999999999999999998774  566666533211        111113556666654 44444445556666


Q ss_pred             HHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700           82 NEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS  159 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~  159 (479)
                      ...++++.. ..|..++...  ..|.+.++. +++++||||||..++.|..++-+.....+++++..++.  .+      
T Consensus        72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------  141 (305)
T COG0492          72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------  141 (305)
T ss_pred             hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence            678999988 4788888764  566777776 99999999999999988764322223456777777544  11      


Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcE
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v  238 (479)
                       .+++++|||+|.+++|.|..|.+.+.+||+++|++.+..   .+.+    .+.++++ +|+++.++.+.++..+  + +
T Consensus       142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~~~~----~~~l~~~~~i~~~~~~~i~ei~G~--~-v  210 (305)
T COG0492         142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---EEIL----VERLKKNVKIEVLTNTVVKEILGD--D-V  210 (305)
T ss_pred             -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---CHHH----HHHHHhcCCeEEEeCCceeEEecC--c-c
Confidence             578999999999999999999999999999999988654   3333    4444444 8999999999999863  2 5


Q ss_pred             EEEEeCCC----cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700          239 VAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH  313 (479)
Q Consensus       239 ~~v~~~~g----~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~  313 (479)
                      ..+.+.+.    +.+++|.+++++|..|++.+++....+ ++|+|.||+.++||+|+|||+|||+..+.         .+
T Consensus       211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq  281 (305)
T COG0492         211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ  281 (305)
T ss_pred             ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence            56666653    378999999999999999988765444 78999999999999999999999998764         23


Q ss_pred             HHHHHHHHHHHHHHHc
Q 011700          314 VDSARKSAKHAVAAIM  329 (479)
Q Consensus       314 ~~~A~~~g~~aa~~i~  329 (479)
                      +..|..+|..||.++.
T Consensus       282 i~ta~~~G~~Aa~~a~  297 (305)
T COG0492         282 IATAAGDGAIAALSAE  297 (305)
T ss_pred             EeehhhhHHHHHHHHH
Confidence            4456667777776654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=9.6e-35  Score=304.49  Aligned_cols=291  Identities=23%  Similarity=0.292  Sum_probs=204.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |.+.|||+||||||||++||.+|+++|++   |+|||++....   .     +........+|++....+......+.+.
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG---~-----~~~~~~i~~~pg~~~~~~~~l~~~l~~~   69 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGG---Q-----ITITSEVVNYPGILNTTGPELMQEMRQQ   69 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCc---e-----EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence            66779999999999999999999999887   99999875311   0     0000111122222111111122233445


Q ss_pred             HHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           81 YNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      +++.+++++. ++|..++.+++  .+.+.++ .+.+++||||||++|+.|+++|........++++......        
T Consensus        70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~--------  139 (555)
T TIGR03143        70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE--------  139 (555)
T ss_pred             HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--------
Confidence            6678999874 58888887653  4445444 6899999999999999888743222223445554433221        


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                      ...+++++|||+|++|+|+|..|.++|.+|+++++.+.+..   .....   .+.++++||++++++.|+++..  ++.+
T Consensus       140 ~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v  211 (555)
T TIGR03143       140 FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--DDGL  211 (555)
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcE
Confidence            11589999999999999999999999999999999876532   33333   2334557999999999999975  3333


Q ss_pred             EEEE---eCCCcEE----eccE----EEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700          239 VAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       239 ~~v~---~~~g~~i----~~D~----Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g  306 (479)
                      ..+.   ..+|++.    ++|.    |++++|++|++.+++..+.. ++|+|.||+++||++|+|||+|||+....    
T Consensus       212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~----  287 (555)
T TIGR03143       212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL----  287 (555)
T ss_pred             EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc----
Confidence            3332   2456532    3676    99999999999998876666 46889999999999999999999975321    


Q ss_pred             ceeecccHHHHHHHHHHHHHHHc
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                           ..+..|..||+.||.+|.
T Consensus       288 -----~~v~~A~~~G~~Aa~~i~  305 (555)
T TIGR03143       288 -----RQVVTAVADGAIAATSAE  305 (555)
T ss_pred             -----chheeHHhhHHHHHHHHH
Confidence                 345578999999998874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=8.7e-35  Score=303.03  Aligned_cols=290  Identities=23%  Similarity=0.300  Sum_probs=211.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .|||+||||||||++||.+|++.|++   ++||++.......         .......++.+....+......+.+.+++
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~~---------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  278 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQVL---------DTMGIENFISVPETEGPKLAAALEEHVKE  278 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCeee---------ccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999998   8898764211100         00011122222222222233445566778


Q ss_pred             cCcEEEeCceEEEEECC--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700           84 HGIELVLGTRVKSADVR--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS  161 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~  161 (479)
                      ++++++.+++|.+++..  ...+.+.++.++.||+||+|||++|+.|++++........+++.......        ..+
T Consensus       279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--------~~~  350 (517)
T PRK15317        279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--------LFK  350 (517)
T ss_pred             CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--------hcC
Confidence            89999999899999876  34566677888999999999999998877633221222344444332211        115


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      +++++|||+|++|+|+|..|+..+.+|+++++.+.+..   +    +.+.+.+.+ .||++++++.+.+++. +++++..
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~  422 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTG  422 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEE
Confidence            78999999999999999999999999999998876532   2    234555554 6999999999999986 3466666


Q ss_pred             EEeCC---C--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700          241 VNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  314 (479)
Q Consensus       241 v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  314 (479)
                      +.+.+   +  +++++|.+++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.         ..+
T Consensus       423 v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~  493 (517)
T PRK15317        423 LTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY---------KQI  493 (517)
T ss_pred             EEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------CEE
Confidence            66543   3  369999999999999999988755555 56889999999999999999999998653         234


Q ss_pred             HHHHHHHHHHHHHHcC
Q 011700          315 DSARKSAKHAVAAIME  330 (479)
Q Consensus       315 ~~A~~~g~~aa~~i~~  330 (479)
                      ..|+.+|..||.++..
T Consensus       494 ~~A~~eG~~Aa~~~~~  509 (517)
T PRK15317        494 IIAMGEGAKAALSAFD  509 (517)
T ss_pred             EEhhhhHHHHHHHHHH
Confidence            5678888888887754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=3.4e-34  Score=293.30  Aligned_cols=285  Identities=24%  Similarity=0.249  Sum_probs=204.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +.++|+||||||||++||..|+++|++   |+|+|+++...        +.+..    .+|.+..  .........+.++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~  194 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPG--------GVVTY----GIPEFRL--PKEIVVTEIKTLK  194 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------cEeee----cCCCccC--CHHHHHHHHHHHH
Confidence            357999999999999999999999887   99999985321        11100    0111100  0011122335577


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh---
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK---  158 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~---  158 (479)
                      +.|++++.++.+      .+.+.+.+. ...||+||||||+ .|+.|++   ||.+.+++++..++.+...+.....   
T Consensus       195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~i---pG~~~~gv~~~~~~l~~~~~~~~~~~~~  264 (449)
T TIGR01316       195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMNI---PGEELCGVYSANDFLTRANLMKAYEFPH  264 (449)
T ss_pred             hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCC---CCCCCCCcEEHHHHHHHHhhcccccccc
Confidence            889999998643      233444332 3479999999998 6877766   7777777877665543322211110   


Q ss_pred             ----cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700          159 ----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  234 (479)
Q Consensus       159 ----~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  234 (479)
                          ...+++++|||+|++|+|+|..+.++|.+||++.+.++.... ..    ....+.+++.||++++++.+.++..++
T Consensus       265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~  339 (449)
T TIGR01316       265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMT-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDE  339 (449)
T ss_pred             cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCC-CC----HHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence                124689999999999999999999999999999987652111 11    222355778999999999999998655


Q ss_pred             CCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeE
Q 011700          235 NGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVY  292 (479)
Q Consensus       235 ~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~Iy  292 (479)
                      ++++..+.+.         +|           +++++|.|++++|+.|++.+++. ++.. .+|+|.||+++||+.|+||
T Consensus       340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf  419 (449)
T TIGR01316       340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF  419 (449)
T ss_pred             CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence            6766666543         22           26999999999999999987764 4665 5688999999999999999


Q ss_pred             EEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      |+|||+..+          .++..|+.+|+.||.+|.
T Consensus       420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~  446 (449)
T TIGR01316       420 AGGDIILGA----------ATVIRAMGQGKRAAKSIN  446 (449)
T ss_pred             EecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence            999998654          357789999999999985

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-34  Score=269.97  Aligned_cols=403  Identities=27%  Similarity=0.414  Sum_probs=302.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCC--cccccCCcccC--C---
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPS--FHTCVGANEER--L---   76 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~--~---   76 (479)
                      +.-.+|||+|.+..+++..... ....+.+.+|..++..||.||++++.+++..+......  |....|.....  .   
T Consensus       178 hvp~liigggtaAfaa~rai~s-~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~  256 (659)
T KOG1346|consen  178 HVPYLIIGGGTAAFAAFRAIKS-NDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG  256 (659)
T ss_pred             cCceeEEcCCchhhhccccccc-CCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence            3468999999887776655544 44567899999999999999999999887655432221  22222222111  1   


Q ss_pred             ---CHhHH---HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHH
Q 011700           77 ---TPKWY---NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLAD  149 (479)
Q Consensus        77 ---~~~~~---~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~  149 (479)
                         ..+.+   ..-||-+..|..|..|+.+.+.|.+.||.++.||+++||||.+|+.++.+.-.+. -...+.+++...|
T Consensus       257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D  336 (659)
T KOG1346|consen  257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD  336 (659)
T ss_pred             ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence               11222   2347999999999999999999999999999999999999999988766322221 1356788889999


Q ss_pred             HHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhh----CCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          150 ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       150 ~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ..++.+.+.+  .+++.|||+|++|-|+|..|.+    .|.+|+-+.....-+...+++.++++-.+.+++.||.++.+.
T Consensus       337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna  414 (659)
T KOG1346|consen  337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA  414 (659)
T ss_pred             HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence            9999888775  4899999999999999999976    478999888877777777888899999999999999999999


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc--ccCcEEEcCcccCCCCCeEEEeeeccccc
Q 011700          226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL--EKGGIKVTGRLQSSNSSVYAVGDVAAFPL  302 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~--~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~  302 (479)
                      .|.++..+ .+. ..+.++||.++..|.|++|+|-.||+++.+. ++..  .=|++.||..|+. -.|||++||++.+..
T Consensus       415 ~v~sv~~~-~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D  491 (659)
T KOG1346|consen  415 KVESVRKC-CKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED  491 (659)
T ss_pred             hhhhhhhh-ccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence            99988763 233 3588999999999999999999999999875 4665  4589999999987 489999999999988


Q ss_pred             cccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec-CcceEeecCCCc------------------eEE
Q 011700          303 KLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGDNVG------------------EVV  363 (479)
Q Consensus       303 ~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~-~~~~~~~G~~~~------------------~~~  363 (479)
                      ...|. ++++|+.+|.-.|+.|.+||.+..  .+|....+||+... ++.+..+|+-..                  ++.
T Consensus       492 ~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~s  568 (659)
T KOG1346|consen  492 GVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLS  568 (659)
T ss_pred             ccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhh
Confidence            77665 456889999999999999998865  46666667776543 122333332100                  000


Q ss_pred             EEccC----------------------------C-CCceE---EEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCc
Q 011700          364 HYGNF----------------------------S-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED  411 (479)
Q Consensus       364 ~~~~~----------------------------~-~~~~~---~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~d  411 (479)
                      ...++                            . ...|+   .|+.+|+.|+|..+++- -..+.....+|..+...+|
T Consensus       569 e~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~AR~II~d~kk~dd  647 (659)
T KOG1346|consen  569 ESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLARTIINDNKKYDD  647 (659)
T ss_pred             hccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhhHHHhccccchhh
Confidence            00000                            0 12243   46779999999999872 2256667788999999999


Q ss_pred             HHHHh
Q 011700          412 LAELE  416 (479)
Q Consensus       412 l~~~~  416 (479)
                      +.+..
T Consensus       648 lnEvA  652 (659)
T KOG1346|consen  648 LNEVA  652 (659)
T ss_pred             HHHHH
Confidence            87764

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.2e-33  Score=289.63  Aligned_cols=287  Identities=22%  Similarity=0.260  Sum_probs=205.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +.+||+||||||||++||.+|+++|++   |+|+|+.+...        +.+.    ..+|.+... .........++++
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~  202 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK  202 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence            357999999999999999999999987   99999875311        1110    011221110 0101122345678


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHH---
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVM---  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l---  157 (479)
                      +.|++++.++.+.      +.+.+.+. +.+.||+||||||+ .|+.+++   ||.+.+++++..++.+...+....   
T Consensus       203 ~~gv~i~~~~~v~------~~v~~~~~~~~~~~d~viiAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~  273 (464)
T PRK12831        203 KLGVKIETNVVVG------KTVTIDELLEEEGFDAVFIGSGAGLPKFMGI---PGENLNGVFSANEFLTRVNLMKAYKPE  273 (464)
T ss_pred             HcCCEEEcCCEEC------CcCCHHHHHhccCCCEEEEeCCCCCCCCCCC---CCcCCcCcEEHHHHHHHHHhccccccc
Confidence            8899999987542      22333332 34579999999998 5877776   777778888776654433221110   


Q ss_pred             ---hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          158 ---KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                         ....+++|+|||+|++|+|+|..+.++|.+||++.+.+. -++.    .. ..+ +.+++.||++++++.+.++..+
T Consensus       274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a----~~-~e~-~~a~~eGV~i~~~~~~~~i~~~  347 (464)
T PRK12831        274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPA----RV-EEV-HHAKEEGVIFDLLTNPVEILGD  347 (464)
T ss_pred             ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCC----CH-HHH-HHHHHcCCEEEecccceEEEec
Confidence               012579999999999999999999999999999998653 2222    11 111 2356789999999999999865


Q ss_pred             CCCcEEEEEeC------------------CCc--EEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcCc-ccCCCC
Q 011700          234 SNGKVVAVNLR------------------DGN--RLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNS  289 (479)
Q Consensus       234 ~~g~v~~v~~~------------------~g~--~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~~-l~t~~~  289 (479)
                      +++++..+++.                  +|+  ++++|.|++|+|+.|++.++..  ++.. ++|.|.||++ ++||.|
T Consensus       348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p  427 (464)
T PRK12831        348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE  427 (464)
T ss_pred             CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence            56766655542                  222  6999999999999999987754  4555 5688999998 999999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~  458 (464)
T PRK12831        428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE  458 (464)
T ss_pred             CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            999999998754          3467899999999999854

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.6e-31  Score=272.26  Aligned_cols=385  Identities=29%  Similarity=0.313  Sum_probs=294.5

Q ss_pred             EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcCc
Q 011700            7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGI   86 (479)
Q Consensus         7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   86 (479)
                      ++|||+|++|+++|..+++.. +..+++++..++..+|.++.++.............          ..... +..+.++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~i   68 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL----------RYPPR-FNRATGI   68 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHh----------cccch-hHHhhCC
Confidence            589999999999999988854 46779989888888887777655443322111100          01111 2346789


Q ss_pred             EEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEE
Q 011700           87 ELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAV  166 (479)
Q Consensus        87 ~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vv  166 (479)
                      ++..+++|..+|+.++++.+.++ ++.||+|++|||++|..++     +.....+++++...++..+......  .++++
T Consensus        69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~  140 (415)
T COG0446          69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV  140 (415)
T ss_pred             EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence            99999999999999999999888 8999999999999998775     3445678999999999888776653  58999


Q ss_pred             EECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE--EEeC
Q 011700          167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA--VNLR  244 (479)
Q Consensus       167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~--v~~~  244 (479)
                      |+|+|++|+|+|..+.+.|.+|++++..+++++..+.+++.+.+.+.++++||+++++..+.+++... +....  +...
T Consensus       141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~-~~~~~~~~~~~  219 (415)
T COG0446         141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG-NTLVVERVVGI  219 (415)
T ss_pred             EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEccc-CcceeeEEEEe
Confidence            99999999999999999999999999999998873228999999999999999999999999998733 22222  5677


Q ss_pred             CCcEEeccEEEEecCCCCChhhhhccc--cc-ccCcEEEcCcccCC-CCCeEEEeeeccccccccCceeecccHHHHHHH
Q 011700          245 DGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS  320 (479)
Q Consensus       245 ~g~~i~~D~Vi~a~G~~p~~~l~~~~~--~~-~~g~i~Vd~~l~t~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~  320 (479)
                      ++..+++|.+++++|.+||+.+.+...  .. .+|+|.||++++|+ .++|||+|||+..+....+.....+++..|..+
T Consensus       220 ~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~  299 (415)
T COG0446         220 DGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAA  299 (415)
T ss_pred             CCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhh
Confidence            888999999999999999988887654  33 67789999999997 999999999999877654455567889999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc-eE-------EEEccCC------CC---ce-EEEEccCCE
Q 011700          321 AKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV-------VHYGNFS------GT---TF-GAYWVNKGR  382 (479)
Q Consensus       321 g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~-------~~~~~~~------~~---~~-~~~~~~~~~  382 (479)
                      ++.++.++.+.  ......+++.+...+++.....|.+.. +.       ...+...      ..   .. ..+..++++
T Consensus       300 ~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (415)
T COG0446         300 GRIAAENIAGA--LRIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADTGR  377 (415)
T ss_pred             hHHHHHHhccc--cccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcccc
Confidence            99999999876  233455788888999998888888764 11       1111110      00   11 112336778


Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHH
Q 011700          383 LVGSFLEGGTKEEYEAIAKATRLQPVVEDLAEL  415 (479)
Q Consensus       383 i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~~~  415 (479)
                      ++|++. -.....+..+..++..+.++.++..+
T Consensus       378 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (415)
T COG0446         378 ILGGQE-LEVLKRIGALALAIGLGDTVAELDAL  409 (415)
T ss_pred             eehhhh-HHHHhhhhhhhhhhhhcCchhhhhhc
Confidence            888877 22223345567777777777766543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=6e-32  Score=293.32  Aligned_cols=286  Identities=25%  Similarity=0.291  Sum_probs=205.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +.+||+||||||||++||.+|+++|++   |+|+|+.+...        +.+.    ..+|.+...  ........+++.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~rlp--~~~~~~~~~~l~  492 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLK----YGIPEFRLP--KKIVDVEIENLK  492 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCCCCC--HHHHHHHHHHHH
Confidence            357999999999999999999999987   99999874311        1111    011221110  011122345677


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAENVCYLRDLADANRLVNVM----  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l----  157 (479)
                      +.|++++.++.+      ++.+.+++.+...||+||||||+ .|+.+++   ||.+.+++++..++.....+....    
T Consensus       493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~~  563 (752)
T PRK12778        493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMNI---PGENSNGVMSSNEYLTRVNLMDAASPDS  563 (752)
T ss_pred             HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCC---CCCCCCCcEEHHHHHHHHhhcccccccc
Confidence            889999988643      23344444445679999999998 4777766   777778888766554432221110    


Q ss_pred             --hcCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          158 --KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       158 --~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                        ....+++|+|||+|++|+|+|..+.++|.+ ||++.+.+. .++. ...+     .+.+++.||++++++.+.++..+
T Consensus       564 ~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e-----~~~~~~~GV~i~~~~~~~~i~~~  637 (752)
T PRK12778        564 DTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE-----VKHAKEEGIEFLTLHNPIEYLAD  637 (752)
T ss_pred             cCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH-----HHHHHHcCCEEEecCcceEEEEC
Confidence              012468999999999999999999999987 999998754 2332 1111     13467889999999999999875


Q ss_pred             CCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcCcccCCCCC
Q 011700          234 SNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       234 ~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                      +++++..+.+.         +|           +++++|.|++|+|++|+..+...  ++.. .+|.|.||++++|+.|+
T Consensus       638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~g  717 (752)
T PRK12778        638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPG  717 (752)
T ss_pred             CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCC
Confidence            56776666542         22           25999999999999999876543  4555 56889999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      |||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       718 VfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~  747 (752)
T PRK12778        718 IYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE  747 (752)
T ss_pred             EEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence            99999999754          3467899999999999864

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=1.1e-31  Score=288.43  Aligned_cols=295  Identities=24%  Similarity=0.335  Sum_probs=200.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+||||||||++||.+|+++|++   |+|+|+.+.. +       +.+.    ..+|.+...  ........+++.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~-G-------G~lr----~~IP~~Rlp--~evL~~die~l~~  601 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENA-G-------GVVK----NIIPQFRIP--AELIQHDIEFVKA  601 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEeccccc-C-------ccee----eeccccccc--HHHHHHHHHHHHH
Confidence            47899999999999999999999987   9999998642 1       1111    012222110  0111223356778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecC-HHHHHHHHHHHhcCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRD-LADANRLVNVMKSCS  161 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~-~~~~~~l~~~l~~~~  161 (479)
                      .|++++.++.+ .++.       .+.+...||+||||||+++ ..+++   +|.+ +++++..+ +.+.......+  ..
T Consensus       602 ~GVe~~~gt~V-di~l-------e~L~~~gYDaVILATGA~~~~~l~I---pG~~-~gV~saldfL~~~k~~~~~~--~~  667 (1019)
T PRK09853        602 HGVKFEFGCSP-DLTV-------EQLKNEGYDYVVVAIGADKNGGLKL---EGGN-QNVIKALPFLEEYKNKGTAL--KL  667 (1019)
T ss_pred             cCCEEEeCcee-EEEh-------hhheeccCCEEEECcCCCCCCCCCC---CCcc-CCceehHHHHHHHhhhcccc--cC
Confidence            89999999765 2222       2334456999999999985 33343   6543 34443211 11111111111  14


Q ss_pred             CCCEEEECCChHHHHHHHHHhhC-C-CeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~-g-~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                      +++|+|||+|++|+|+|..+.+. | .+|+++.|++. .++. .++++    .+.+ +.||+++..+.+.+++.  ++++
T Consensus       668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eEl----e~Al-eeGVe~~~~~~p~~I~~--dG~l  739 (1019)
T PRK09853        668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREEY----EEAL-EDGVEFKELLNPESFDA--DGTL  739 (1019)
T ss_pred             CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHHH----HHHH-HcCCEEEeCCceEEEEc--CCcE
Confidence            79999999999999999998887 4 48999998763 4443 33333    3333 46999999998888863  3322


Q ss_pred             E----------------EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccc
Q 011700          239 V----------------AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF  300 (479)
Q Consensus       239 ~----------------~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~  300 (479)
                      .                .+...++.++++|.||+|+|.+|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..
T Consensus       740 ~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~G  819 (1019)
T PRK09853        740 TCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRG  819 (1019)
T ss_pred             EEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccC
Confidence            1                122233468999999999999999998754 4655 568899999999999999999999865


Q ss_pred             cccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec
Q 011700          301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF  348 (479)
Q Consensus       301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~  348 (479)
                      +          ..+..|+.+|+.||++|.+... ..+...|.+++..+
T Consensus       820 p----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~~~~~  856 (1019)
T PRK09853        820 P----------STIVAAIADARRAADAILSREG-IRSHQNDKYWNNVE  856 (1019)
T ss_pred             c----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccccccc
Confidence            5          3567899999999999987543 34555565555444

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.98  E-value=4.1e-31  Score=271.94  Aligned_cols=283  Identities=25%  Similarity=0.278  Sum_probs=196.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+||||||||+++|..|+++|++   |+|+|+++...        +++..    .+|.+..  .........+++++
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~--~~~~~~~~~~~l~~  202 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRL--PKDIVDREVERLLK  202 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccC--CHHHHHHHHHHHHH
Confidence            47999999999999999999999876   99999986421        11100    1111110  01111233456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc-CC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CS  161 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~-~~  161 (479)
                      .|++++.++.+.      +.+.+.+. .+.||+||||||+. |..+++   +|.+.+++++..++............ ..
T Consensus       203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i---~G~~~~gv~~~~~~l~~~~~~~~~~~~~~  272 (457)
T PRK11749        203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLGI---PGENLGGVYSAVDFLTRVNQAVADYDLPV  272 (457)
T ss_pred             cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCCC---CCccCCCcEEHHHHHHHHhhccccccCCC
Confidence            899999986542      22223222 37899999999986 555555   66666666654433222111000011 14


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      +++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++.  ...    ..+.+++.||++++++.+.++..+ ++.+.
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~  345 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SEE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVT  345 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CHH----HHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence            7999999999999999999999987 8999998754 3332  222    245678899999999999999863 33322


Q ss_pred             EEEeC-------------------CCcEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-cccCCCCCeEEEee
Q 011700          240 AVNLR-------------------DGNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGD  296 (479)
Q Consensus       240 ~v~~~-------------------~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~~IyA~GD  296 (479)
                      .+.+.                   +++++++|.|++++|++|+..++..  ++.. ++|+|.||+ +++|+.|+|||+||
T Consensus       346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD  425 (457)
T PRK11749        346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD  425 (457)
T ss_pred             EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence            33321                   2347999999999999999887643  3555 578899998 89999999999999


Q ss_pred             eccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          297 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       297 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      |+..+          ..+..|+.+|+.||.+|..
T Consensus       426 ~~~~~----------~~~~~A~~~G~~aA~~I~~  449 (457)
T PRK11749        426 IVTGA----------ATVVWAVGDGKDAAEAIHE  449 (457)
T ss_pred             cCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            99543          3577899999999999864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.98  E-value=6.9e-31  Score=286.90  Aligned_cols=285  Identities=21%  Similarity=0.221  Sum_probs=203.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||||||||+||.+|+++|++   |+|+|+.+..        .+++.    ..+|.+...  ........+.+++
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~--------GG~l~----yGIP~~rlp--~~vi~~~i~~l~~  368 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDL--------GGVLR----YGIPEFRLP--NQLIDDVVEKIKL  368 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCC--------CceEE----ccCCCCcCh--HHHHHHHHHHHHh
Confidence            57999999999999999999999997   9999998531        12221    113332210  1111223456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----  157 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l-----  157 (479)
                      .|++++.++.+      ++.+.+++.....||+|+||||+. |+.+++   ||.+.++|++..++..........     
T Consensus       369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~I---pG~dl~GV~~a~dfL~~~~~~~~~~~~~~  439 (944)
T PRK12779        369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMNV---PGEHLLGVMSANEFLTRVNLMRGLDDDYE  439 (944)
T ss_pred             hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCCC---CCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence            89999988543      344555555556799999999995 777766   887888888766654433221111     


Q ss_pred             ---hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          158 ---KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                         ....+++|+|||||++|+|+|..+.+.|.+|+++.+++. .++.     ..+.+.+ ..+.||+++.+..+.+|..+
T Consensus       440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa-----~~~e~~~-a~eeGV~~~~~~~p~~i~~d  513 (944)
T PRK12779        440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPA-----RVEELHH-ALEEGINLAVLRAPREFIGD  513 (944)
T ss_pred             ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccc-----cHHHHHH-HHHCCCEEEeCcceEEEEec
Confidence               112478999999999999999999999999999988753 2221     1122333 34679999999999999764


Q ss_pred             CC-CcEEEEEe---------C--------CC--cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-cccCCCC
Q 011700          234 SN-GKVVAVNL---------R--------DG--NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNS  289 (479)
Q Consensus       234 ~~-g~v~~v~~---------~--------~g--~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~  289 (479)
                      ++ +++..+.+         .        +|  .++++|.||+|+|+.|+..+...  ++.. ++|.|.||+ +++||.|
T Consensus       514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p  593 (944)
T PRK12779        514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK  593 (944)
T ss_pred             CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence            33 34544432         1        12  36999999999999999865443  3554 568899996 5899999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +|||+|||+..+          .++..|+.+|+.||.+|..
T Consensus       594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~  624 (944)
T PRK12779        594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVG  624 (944)
T ss_pred             CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHH
Confidence            999999999754          3577899999999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.98  E-value=4.5e-31  Score=262.72  Aligned_cols=288  Identities=25%  Similarity=0.294  Sum_probs=196.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+|++|+++|..|++.|++   |+++|+.+...        +.+...    .+.+..  .........+.+.+
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~g--------g~~~~~----~~~~~~--~~~~~~~~~~~l~~   80 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPG--------GLMLFG----IPEFRI--PIERVREGVKELEE   80 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCC--------ceeeec----Cccccc--CHHHHHHHHHHHHh
Confidence            47999999999999999999998876   99999986421        111000    010000  00001122344556


Q ss_pred             cCcEEEeCceEEEEEC----CCcEE--Ee--CCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHH
Q 011700           84 HGIELVLGTRVKSADV----RRKTL--VT--ATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLV  154 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~----~~~~v--~~--~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~  154 (479)
                      .+++++.++.+..++.    +....  ..  .++..+.||+||||||+. |+.|++   ||.+.+++++..+  ....+.
T Consensus        81 ~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~i---pg~~~~~v~~~~~--~~~~~~  155 (352)
T PRK12770         81 AGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGI---PGEDLPGVYSALE--YLFRIR  155 (352)
T ss_pred             CCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCC---CCccccCceeHHH--HHHHhh
Confidence            7999999877754432    01111  11  112247899999999994 666666   6666666665322  222211


Q ss_pred             HH------Hh---cCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcC
Q 011700          155 NV------MK---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  224 (479)
Q Consensus       155 ~~------l~---~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~  224 (479)
                      ..      ..   ...+++++|||+|++|+|+|..|...|.+ |+++.+.+..... ..    ....+.|+++||+++++
T Consensus       156 ~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~~----~~~~~~l~~~gi~i~~~  230 (352)
T PRK12770        156 AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-AG----KYEIERLIARGVEFLEL  230 (352)
T ss_pred             hccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-CC----HHHHHHHHHcCCEEeec
Confidence            10      00   11258999999999999999999999987 9999887543211 11    33445688999999999


Q ss_pred             CceEEEEEcCCCcEEEEEe--------------------CCCcEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEc
Q 011700          225 TVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVT  281 (479)
Q Consensus       225 ~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd  281 (479)
                      +.+.+++.  ++++..+.+                    .+++++++|.|++++|++|++.+...  ++.. .+|+|.||
T Consensus       231 ~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd  308 (352)
T PRK12770        231 VTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVD  308 (352)
T ss_pred             cCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeC
Confidence            99999975  233333332                    12357999999999999999987663  4555 56789999


Q ss_pred             CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          282 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       282 ~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ++++|+.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       309 ~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~  347 (352)
T PRK12770        309 EKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE  347 (352)
T ss_pred             CCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence            99999999999999999754          3467899999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.97  E-value=4.8e-30  Score=282.77  Aligned_cols=284  Identities=21%  Similarity=0.245  Sum_probs=199.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||||||||+||.+|+++|++   |+|+|+.+...        +++.    ..+|.+..  ..+......+++.+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~  492 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD  492 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence            47999999999999999999999987   99999875421        1111    11222210  01112234566778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCc-EEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM----  157 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~-~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l----  157 (479)
                      .|++++.++.+ .     +.+.+.+-. ...||+||||||+. |+.+++   ||.+.+++++..++.....+....    
T Consensus       493 ~Gv~~~~~~~v-g-----~~~~~~~l~~~~~yDaViIATGa~~pr~l~I---pG~~l~gV~~a~~fL~~~~~~~~~~~~~  563 (1006)
T PRK12775        493 IGVKIETNKVI-G-----KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGI---PGEFAGQVYSANEFLTRVNLMGGDKFPF  563 (1006)
T ss_pred             CCCEEEeCCcc-C-----CccCHHHHhhccCCCEEEEecCCCCCCCCCC---CCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence            99999998533 1     222221111 24699999999995 777776   777777887765544332221000    


Q ss_pred             ---hcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          158 ---KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                         ....+++|+|||+|++|+++|..+.++|. .|+++.+.... ++.  .++   . .+.+++.||++++++.+.++..
T Consensus       564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a--~~~---e-~~~a~eeGI~~~~~~~p~~i~~  637 (1006)
T PRK12775        564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPA--RIE---E-IRHAKEEGIDFFFLHSPVEIYV  637 (1006)
T ss_pred             ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCC--CHH---H-HHHHHhCCCEEEecCCcEEEEe
Confidence               01257999999999999999999999987 48888765432 221  111   1 2346778999999999999986


Q ss_pred             cCCCcEEEEEeC-----------------CC--cEEeccEEEEecCCCCChhhhhc--cccc-ccCcEEEcC-----ccc
Q 011700          233 DSNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQ  285 (479)
Q Consensus       233 ~~~g~v~~v~~~-----------------~g--~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~i~Vd~-----~l~  285 (479)
                      +++|++..+.+.                 +|  .++++|.|++|+|+.|++.+...  ++.. .+|.|.+|+     +++
T Consensus       638 ~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~  717 (1006)
T PRK12775        638 DAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQS  717 (1006)
T ss_pred             CCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcC
Confidence            567777666542                 12  26999999999999999886543  4555 567899996     789


Q ss_pred             CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      ||+|+|||+|||+..+          .++..|+.+|+.||.+|.
T Consensus       718 Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~  751 (1006)
T PRK12775        718 TNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA  751 (1006)
T ss_pred             CCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence            9999999999998754          356789999999999875

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=5.2e-30  Score=244.11  Aligned_cols=295  Identities=21%  Similarity=0.295  Sum_probs=216.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ++++|||+|.|.+|.+....|-...+   +|++|++..++.|. |.++....   ...++...        .+......+
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~v---GTve~rSI--------vEPIr~i~r  118 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTV---GTVELRSI--------VEPIRAIAR  118 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCccc---cceeehhh--------hhhHHHHhh
Confidence            46799999999999999888766444   49999999876553 22111000   00011110        122233333


Q ss_pred             Hc--CcEEEeCceEEEEECCCcEEEe----CCC----cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHH
Q 011700           83 EH--GIELVLGTRVKSADVRRKTLVT----ATG----ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANR  152 (479)
Q Consensus        83 ~~--gv~~~~~~~v~~i~~~~~~v~~----~~g----~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~  152 (479)
                      ..  ++.++.. +.+.+|+++++|+.    .++    ..+.||+||+|+|+.+..+.+   ||.. ++.+.++..+++++
T Consensus       119 ~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi---pGV~-e~~~FLKEv~dAqe  193 (491)
T KOG2495|consen  119 KKNGEVKYLEA-ECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI---PGVE-ENAHFLKEVEDAQE  193 (491)
T ss_pred             ccCCCceEEec-ccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCC---Cchh-hchhhhhhhhHHHH
Confidence            33  5777765 77889999998875    233    468999999999999877666   6643 67788999999998


Q ss_pred             HHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhhC--------------CCeEEEEeecCccccccCC
Q 011700          153 LVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN--------------KINVTMVFPEAHCMARLFT  203 (479)
Q Consensus       153 l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~  203 (479)
                      ++..+-.+               +--++||||||+.|+|+|.+|+.+              -.+||+++..|++|+. ||
T Consensus       194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~m-Fd  272 (491)
T KOG2495|consen  194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNM-FD  272 (491)
T ss_pred             HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHH-HH
Confidence            86654321               123689999999999999999752              4689999999999995 99


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh--hccccc-ccCcE
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--EGQLTL-EKGGI  278 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~--~~~~~~-~~g~i  278 (479)
                      ..+.++.++.+.+.||++.+++.|..++.   .. ..+...||  ++|++.+++|+||..|..-.-  ...+.. .+.++
T Consensus       273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L  348 (491)
T KOG2495|consen  273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL  348 (491)
T ss_pred             HHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence            99999999999999999999999998864   22 23444455  579999999999988765422  112222 24489


Q ss_pred             EEcCcccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          279 KVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       279 ~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      .||++||. +.+||||+|||+..+..       .++++.|.+||.++|+++-
T Consensus       349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn  393 (491)
T KOG2495|consen  349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN  393 (491)
T ss_pred             eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence            99999998 89999999999944322       2578899999999999874

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.97  E-value=1e-29  Score=261.98  Aligned_cols=289  Identities=25%  Similarity=0.322  Sum_probs=195.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+||||++||..|+++|++   |+|+|+++...        +++.    ..+|.+..  .........+++.+
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~----~gip~~~~--~~~~~~~~~~~~~~  205 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLR----YGIPDFKL--EKEVIDRRIELMEA  205 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceee----ecCCcccC--CHHHHHHHHHHHHh
Confidence            47999999999999999999999987   99999986421        1111    01121110  00111223456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHH--HHHHH----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADAN--RLVNV----  156 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~--~l~~~----  156 (479)
                      .|++++.++.+. .+...      +.....||+||+|||+. |+.+++   +|.+..++++..++....  .+...    
T Consensus       206 ~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~i---pG~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (471)
T PRK12810        206 EGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGI---PGRDLDGVHFAMDFLIQNTRRVLGDETEP  275 (471)
T ss_pred             CCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCC---CCccCCCcEEHHHHHHHHHhhhccccccc
Confidence            899999986542 22111      11235799999999997 666665   777777777643321110  00000    


Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCC----HHHH-HHHHHHHHhCCcEEEcCCceEEE
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFT----PKIA-SYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~----~~~~-~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .....+++++|||+|++|+|+|..+.+.|. +|+++++.+......++    +... ....+.+++.||++++++.+++|
T Consensus       276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i  355 (471)
T PRK12810        276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF  355 (471)
T ss_pred             cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence            011257899999999999999998888875 78976655432221101    0011 11345567889999999999999


Q ss_pred             EEcCCCcEEEEEeC-----CC---------cEEeccEEEEecCCCCChh-hhhc-cccc-ccCcEEEc-CcccCCCCCeE
Q 011700          231 DVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGIRPNTS-LFEG-QLTL-EKGGIKVT-GRLQSSNSSVY  292 (479)
Q Consensus       231 ~~~~~g~v~~v~~~-----~g---------~~i~~D~Vi~a~G~~p~~~-l~~~-~~~~-~~g~i~Vd-~~l~t~~~~Iy  292 (479)
                      .. +++++..|++.     +|         +++++|.||+|+|++|+.. +++. ++.. ++|.+.+| ++++|+.|+||
T Consensus       356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf  434 (471)
T PRK12810        356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF  434 (471)
T ss_pred             Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence            75 46776655432     22         4799999999999999853 5543 4555 46889998 79999999999


Q ss_pred             EEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      |+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~  462 (471)
T PRK12810        435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDA  462 (471)
T ss_pred             EccccCCCc----------hhHHHHHHHHHHHHHHHHH
Confidence            999999753          3467899999999999864

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.97  E-value=3.5e-29  Score=270.67  Aligned_cols=280  Identities=24%  Similarity=0.344  Sum_probs=187.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+||||||||++||.+|+++|++   |+|+|+++.. +       +.+..    .+|.+...  ........+++.+
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~l-G-------G~l~~----~IP~~rlp--~e~l~~~ie~l~~  599 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKP-G-------GVVKN----IIPEFRIS--AESIQKDIELVKF  599 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccc-C-------ceeee----cccccCCC--HHHHHHHHHHHHh
Confidence            47999999999999999999999987   9999998642 1       11100    01221100  0111223356677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH-hcCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSG  162 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l-~~~~~  162 (479)
                      .||+++.++..        .+.+.+.+...||+||||||+++..+.  +++|.+ ++++.  ..+.+..+.... ....+
T Consensus       600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G  666 (1012)
T TIGR03315       600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG  666 (1012)
T ss_pred             cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence            89999887421        112223334679999999999853321  235533 33432  222222221110 01258


Q ss_pred             CCEEEECCChHHHHHHHHHhhC-CC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          163 GNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~-g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      ++|+|||+|++|+|+|..+.+. |. +|+++.|.+. .++. .++++    .+.+ +.||+++++..+.+++   ++++.
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eEl----~~al-eeGVe~~~~~~p~~I~---~g~l~  737 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREEL----EEAL-EDGVDFKELLSPESFE---DGTLT  737 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHHH----HHHH-HcCCEEEeCCceEEEE---CCeEE
Confidence            9999999999999999998876 74 8999998763 3443 33333    3333 4799999998888886   12221


Q ss_pred             EE--------------EeCCC--cEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCc-ccCCCCCeEEEeeeccc
Q 011700          240 AV--------------NLRDG--NRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAF  300 (479)
Q Consensus       240 ~v--------------~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~  300 (479)
                      ..              ...+|  .++++|.||+|+|.+|++.+++. ++.. .+|+|.||++ ++|+.|+|||+|||+..
T Consensus       738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G  817 (1012)
T TIGR03315       738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG  817 (1012)
T ss_pred             EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC
Confidence            11              11123  36899999999999999998754 4555 5688999986 89999999999999865


Q ss_pred             cccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          301 PLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      +          ..+..|+.+|+.||.+|++..
T Consensus       818 P----------~tVv~AIaqGr~AA~nIl~~~  839 (1012)
T TIGR03315       818 P----------ATIVEAIADGRKAANAILSRE  839 (1012)
T ss_pred             c----------cHHHHHHHHHHHHHHHHhccc
Confidence            4          357789999999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=99.96  E-value=1.8e-28  Score=252.00  Aligned_cols=284  Identities=23%  Similarity=0.355  Sum_probs=197.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+||+|+++|..|+++|++   |+++|+.+..        .+++.    ..+|.+..  .........+++++
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~--------gG~l~----~gip~~~~--~~~~~~~~~~~~~~  203 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEI--------GGLLT----FGIPSFKL--DKAVLSRRREIFTA  203 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCC--------Cceee----ecCccccC--CHHHHHHHHHHHHH
Confidence            47899999999999999999999886   9999988642        11111    01222211  01111233467788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADA--NRLVNV----  156 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~--~~l~~~----  156 (479)
                      .|++++.++.+..      .+.+.+ ....||+||+|||+.+. .+++   +|.+.+++++..++...  ..+...    
T Consensus       204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i---~g~~~~gV~~a~~~l~~~~~~~~~~~~~~  273 (467)
T TIGR01318       204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGL---PGEDAPGVLQALPFLIANTRQLMGLPESP  273 (467)
T ss_pred             CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCC---CCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence            9999999876521      111111 12479999999999874 3454   77777787764432211  111000    


Q ss_pred             ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                         +....+++++|||+|++|+|+|..+.++|. +||++++.+.. ++. .+.++     +.+++.||++++++.+.++.
T Consensus       274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~  347 (467)
T TIGR01318       274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRREV-----ANAREEGVEFLFNVQPVYIE  347 (467)
T ss_pred             cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHHH-----HHHHhcCCEEEecCCcEEEE
Confidence               001246899999999999999999999985 79999987653 443 23322     34567899999999999997


Q ss_pred             EcCCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCCh-hhhh-ccccc-ccCcEEEc----Ccc
Q 011700          232 VDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNT-SLFE-GQLTL-EKGGIKVT----GRL  284 (479)
Q Consensus       232 ~~~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~-~~~~~-~~g~i~Vd----~~l  284 (479)
                      .++++++..+++.         +|           +++++|.||+++|++|+. .+++ .++.. ++|+|.||    +++
T Consensus       348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~  427 (467)
T TIGR01318       348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY  427 (467)
T ss_pred             ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence            6556666555431         11           369999999999999985 3433 34555 56889999    689


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +|+.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~  463 (467)
T TIGR01318       428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILD  463 (467)
T ss_pred             cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHH
Confidence            99999999999998754          3466899999999999863

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.96  E-value=1.8e-28  Score=261.13  Aligned_cols=282  Identities=23%  Similarity=0.285  Sum_probs=191.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+||||||||++||..|++.|++   |+|+|+++...        +.+..    .+|.+..  .........+.+.+
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~~--~~~~~~~~~~~l~~  255 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG--------GMMRY----GIPRFRL--PESVIDADIAPLRA  255 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC--------ceeee----cCCCCCC--CHHHHHHHHHHHHH
Confidence            47999999999999999999999987   99999986421        11110    1121110  00111122345677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      .|++++.++.+ .++     +.+.+. ...||+||||||+.+ ..+++   ||.+.++++...++...  ....-....+
T Consensus       256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~i---pG~~~~gv~~~~~~l~~--~~~~~~~~~g  323 (652)
T PRK12814        256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMGI---PGEELPGVISGIDFLRN--VALGTALHPG  323 (652)
T ss_pred             cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCCC---CCcCcCCcEeHHHHHHH--hhcCCcccCC
Confidence            89999988643 221     112111 235999999999985 34454   77666666643222111  1000011257


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE--
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--  238 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v--  238 (479)
                      ++++|||+|++|+|+|..+.+.|. +||++.+.++ .++. .+.++    .+. .+.||+|++++.+.++..+ ++.+  
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~ei----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v  396 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAEI----EEA-LAEGVSLRELAAPVSIERS-EGGLEL  396 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH----HHH-HHcCCcEEeccCcEEEEec-CCeEEE
Confidence            999999999999999999999986 6999998764 3443 23333    222 3579999999999999763 3332  


Q ss_pred             EEEEeC---------------CCc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcC-cccCCCCCeEEEeeec
Q 011700          239 VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVA  298 (479)
Q Consensus       239 ~~v~~~---------------~g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~-~l~t~~~~IyA~GD~~  298 (479)
                      ..+.+.               +|+  ++++|.||+++|+.|++.+++. ++.. .+|+|.||+ +++|+.|+|||+|||+
T Consensus       397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~  476 (652)
T PRK12814        397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV  476 (652)
T ss_pred             EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence            222111               122  5999999999999999987754 4555 468899997 6899999999999998


Q ss_pred             cccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          299 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ..+          .++..|+.+|+.||.+|...
T Consensus       477 ~g~----------~~v~~Ai~~G~~AA~~I~~~  499 (652)
T PRK12814        477 TGA----------DIAINAVEQGKRAAHAIDLF  499 (652)
T ss_pred             CCc----------hHHHHHHHHHHHHHHHHHHH
Confidence            754          34678999999999998643

>PRK13984 putative oxidoreductase; Provisional

Probab=99.96  E-value=3.5e-28  Score=258.48  Aligned_cols=280  Identities=23%  Similarity=0.238  Sum_probs=190.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+|+||+++|..|+++|++   |+|+|+++...        +.+.    ..+|.+..  .........+++++
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~g--------G~~~----~~i~~~~~--~~~~~~~~~~~~~~  345 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPG--------GVMR----YGIPSYRL--PDEALDKDIAFIEA  345 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceEe----ecCCcccC--CHHHHHHHHHHHHH
Confidence            57899999999999999999999987   99999886421        1110    01111100  00111223456788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS---  159 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~---  159 (479)
                      .|++++.++.|.. +     +... .....||+||+|||+. |+.+++   +|.+..++++.  ...+..+...+..   
T Consensus       346 ~gv~~~~~~~v~~-~-----~~~~-~~~~~yD~vilAtGa~~~r~l~i---~G~~~~gv~~a--~~~l~~~~~~~~~~~~  413 (604)
T PRK13984        346 LGVKIHLNTRVGK-D-----IPLE-ELREKHDAVFLSTGFTLGRSTRI---PGTDHPDVIQA--LPLLREIRDYLRGEGP  413 (604)
T ss_pred             CCcEEECCCEeCC-c-----CCHH-HHHhcCCEEEEEcCcCCCccCCC---CCcCCcCeEeH--HHHHHHHHhhhccCCC
Confidence            9999999876631 1     1111 1235799999999987 566665   77666666642  2233333322211   


Q ss_pred             --CCCCCEEEECCChHHHHHHHHHhhCCC------eEEEEeec--CccccccCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          160 --CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE--AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       160 --~~~~~vvVIGgG~~g~E~A~~l~~~g~------~Vtlv~~~--~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                        ..+++++|||||++|+|+|..+.+++.      +|+++...  ...++.    ... .+.+ +.+.||++++++.+.+
T Consensus       414 ~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~----~~~-e~~~-~~~~GV~i~~~~~~~~  487 (604)
T PRK13984        414 KPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA----DME-EIEE-GLEEGVVIYPGWGPME  487 (604)
T ss_pred             cCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC----CHH-HHHH-HHHcCCEEEeCCCCEE
Confidence              136899999999999999999998753      78886432  222222    211 1222 3457999999998988


Q ss_pred             EEEcCCCcEEEEEeC--------C-----------CcEEeccEEEEecCCCCChhhhhc----ccccccCcEEEcCcccC
Q 011700          230 FDVDSNGKVVAVNLR--------D-----------GNRLPTDMVVVGIGIRPNTSLFEG----QLTLEKGGIKVTGRLQS  286 (479)
Q Consensus       230 i~~~~~g~v~~v~~~--------~-----------g~~i~~D~Vi~a~G~~p~~~l~~~----~~~~~~g~i~Vd~~l~t  286 (479)
                      +.. +++++..+++.        +           .+++++|.|++++|++|++.++..    .+..++|.|.||+++||
T Consensus       488 i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~T  566 (604)
T PRK13984        488 VVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQT  566 (604)
T ss_pred             EEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCcc
Confidence            865 45666555442        1           236999999999999999987653    24346788999999999


Q ss_pred             CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ++|+|||+|||+..+.           +..|+.+|+.||.+|..
T Consensus       567 s~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~  599 (604)
T PRK13984        567 SIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM  599 (604)
T ss_pred             CCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence            9999999999997642           35689999999999853

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.96  E-value=7.8e-28  Score=257.35  Aligned_cols=284  Identities=22%  Similarity=0.351  Sum_probs=194.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+|||||+||..|++.|++   |+|+|+.+..        ++++..    .+|.+..  .........+++++
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~--------GG~l~~----gip~~~l--~~~~~~~~~~~~~~  389 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEI--------GGLLTF----GIPAFKL--DKSLLARRREIFSA  389 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCC--------Cceeee----cCCCccC--CHHHHHHHHHHHHH
Confidence            57999999999999999999999987   9999987542        111111    1222211  01111223456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHH--HHHHHHHH----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLA--DANRLVNV----  156 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~--~~~~l~~~----  156 (479)
                      .|++++.++.+..      .+...+ ....||+|++|||+... .+++   +|.+..+++...++.  ....+...    
T Consensus       390 ~Gv~~~~~~~v~~------~i~~~~-~~~~~DavilAtGa~~~~~l~i---~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~  459 (654)
T PRK12769        390 MGIEFELNCEVGK------DISLES-LLEDYDAVFVGVGTYRSMKAGL---PNEDAPGVYDALPFLIANTKQVMGLEELP  459 (654)
T ss_pred             CCeEEECCCEeCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCC---CCCCCCCeEEhHHHHHHHHhhhccCcccc
Confidence            8999998875521      111111 12369999999998643 3444   777777776432211  00010000    


Q ss_pred             ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                         .....+++++|||+|++|+|+|..+.++|. +||++.+.+.. ++. .+.+     .+.+++.||++++++.+.++.
T Consensus       460 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~  533 (654)
T PRK12769        460 EEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKKE-----VKNAREEGANFEFNVQPVALE  533 (654)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEE
Confidence               001246899999999999999999989886 79999987653 332 2222     345778899999999999997


Q ss_pred             EcCCCcEEEEEeC---------CC-----------cEEeccEEEEecCCCCCh-hhhh-ccccc-ccCcEEEcC----cc
Q 011700          232 VDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIGIRPNT-SLFE-GQLTL-EKGGIKVTG----RL  284 (479)
Q Consensus       232 ~~~~g~v~~v~~~---------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~-~~~~~-~~g~i~Vd~----~l  284 (479)
                      .++++++..+++.         +|           .++++|.||+|+|+.|+. .+++ .++.+ .+|.|.||+    ++
T Consensus       534 ~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~  613 (654)
T PRK12769        534 LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRY  613 (654)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCc
Confidence            6556777666541         22           259999999999999986 3443 34665 568899986    58


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ||+.|+|||+|||+..+          .++..|+.+|+.||.+|..
T Consensus       614 ~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~  649 (654)
T PRK12769        614 QTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIID  649 (654)
T ss_pred             ccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHH
Confidence            99999999999998764          3567899999999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.96  E-value=8e-28  Score=248.07  Aligned_cols=290  Identities=21%  Similarity=0.298  Sum_probs=193.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+|++|++||..|+++|++   |+|+|+.+...        +++.    ..+|.+..  .........+++++
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~g--------G~l~----~gip~~~~--~~~~~~~~~~~~~~  205 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCG--------GLLM----YGIPNMKL--DKAIVDRRIDLLSA  205 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceee----ccCCCccC--CHHHHHHHHHHHHh
Confidence            37999999999999999999999886   99999986421        1110    01121110  00111223466788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCH-HHHHHHHH--HH--
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDL-ADANRLVN--VM--  157 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~-~~~~~l~~--~l--  157 (479)
                      .|++++.++.+. .+...      +.....||+|++|||+. |+.+++   +|.+.+++++..++ .+......  ..  
T Consensus       206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~i---~G~~~~gV~~~~~~l~~~~~~~~~~~~~~  275 (485)
T TIGR01317       206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLPI---PGRELKGIHYAMEFLPSATKALLGKDFKD  275 (485)
T ss_pred             CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCCC---CCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence            999999987653 11111      11235799999999998 777776   77777788765432 22211110  00  


Q ss_pred             ---hcCCCCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccccCC----H------HHHHHHHHHHHhCCcEE-E
Q 011700          158 ---KSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARLFT----P------KIASYYEEYYKSKGVKF-V  222 (479)
Q Consensus       158 ---~~~~~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~~~----~------~~~~~~~~~l~~~GV~i-~  222 (479)
                         ....+++|+|||+|++|+|+|..+.+++ .+|+++++.+..+.....    +      ++....++..+..||++ +
T Consensus       276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~  355 (485)
T TIGR01317       276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE  355 (485)
T ss_pred             cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence               0125799999999999999987777776 589999887765432110    0      12223344444467654 4


Q ss_pred             cCCceEEEEEcCCCcEEEEEe--------CCC-----------cEEeccEEEEecCCC-CChhhhhc-cccc-ccCcEE-
Q 011700          223 KGTVLSSFDVDSNGKVVAVNL--------RDG-----------NRLPTDMVVVGIGIR-PNTSLFEG-QLTL-EKGGIK-  279 (479)
Q Consensus       223 ~~~~v~~i~~~~~g~v~~v~~--------~~g-----------~~i~~D~Vi~a~G~~-p~~~l~~~-~~~~-~~g~i~-  279 (479)
                      +++.+.+|..++++++..+.+        .+|           .++++|.|++++|.. |++.+++. ++.. .+|.+. 
T Consensus       356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~  435 (485)
T TIGR01317       356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA  435 (485)
T ss_pred             EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence            677788887644466666553        133           269999999999986 88877654 4554 467775 


Q ss_pred             EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          280 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       280 Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +|++++|+.|+|||+|||+..+          ..+..|+.+|+.||.+|..
T Consensus       436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~  476 (485)
T TIGR01317       436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDR  476 (485)
T ss_pred             cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999998754          3466799999999999854

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.4e-28  Score=213.18  Aligned_cols=281  Identities=23%  Similarity=0.265  Sum_probs=198.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (479)
                      .+.+|+|||.|||+.+||++++|.-++.   +|+|--..   +.......+.......++|+|+.. .|.+..+.+.++.
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkP---llfEG~~~---~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs   80 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKP---LLFEGMMA---NGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQS   80 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCc---eEEeeeec---cCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHH
Confidence            3458999999999999999999987773   77765421   111112233334456778888753 3444445566666


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      .++|.+++.. .|..++...+-..+ .+.+.+.+|.+|+|||+..+.+..   ||.. +.-|+.+.+....-+.....-+
T Consensus        81 ~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~---pg~g-e~~fWqrGiSaCAVCDGaapif  155 (322)
T KOG0404|consen   81 ERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHL---PGEG-EGEFWQRGISACAVCDGAAPIF  155 (322)
T ss_pred             Hhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeeec---CCCC-cchHHhcccchhhcccCcchhh
Confidence            7789999986 78888877664333 356789999999999999888776   4431 1112222222111111111112


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      +.|.++|||||.+++|-|.+|.+.+.+|++++|++++..   ...|.+   +..+..+|+++.++.+.+...+ .+.+..
T Consensus       156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~Mq~---ra~~npnI~v~~nt~~~ea~gd-~~~l~~  228 (322)
T KOG0404|consen  156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIMQQ---RAEKNPNIEVLYNTVAVEALGD-GKLLNG  228 (322)
T ss_pred             cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHHHH---HHhcCCCeEEEechhhhhhccC-cccccc
Confidence            578899999999999999999999999999999988654   233332   3345678999999987777652 222222


Q ss_pred             -----EEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc-CcccCCCCCeEEEeeecccc
Q 011700          241 -----VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFP  301 (479)
Q Consensus       241 -----v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd-~~l~t~~~~IyA~GD~~~~~  301 (479)
                           +.+.+-+.++.+-+++++|..|++.+++.++++ ++|+|++- ..-.||+|++||+||+....
T Consensus       229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k  296 (322)
T KOG0404|consen  229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK  296 (322)
T ss_pred             eEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence                 333334579999999999999999999998888 68898887 56788999999999998754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=9.1e-27  Score=258.38  Aligned_cols=278  Identities=19%  Similarity=0.172  Sum_probs=192.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+|||||||||+||.+|++.|++   |+|+|+++....       .+....  ..+++..   .........+.+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG-------~~~~~~--~~~~g~~---~~~~~~~~~~~l~~  227 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGG-------SLLSEA--ETIDGKP---AADWAAATVAELTA  227 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCC-------eeeccc--cccCCcc---HHHHHHHHHHHHhc
Confidence            57999999999999999999999987   999999864210       011000  0111100   00000112233444


Q ss_pred             c-CcEEEeCceEEEEECCCcEEEeC----------C----C--cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecC
Q 011700           84 H-GIELVLGTRVKSADVRRKTLVTA----------T----G--ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRD  146 (479)
Q Consensus        84 ~-gv~~~~~~~v~~i~~~~~~v~~~----------~----g--~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~  146 (479)
                      . +++++.++.|..++..+......          +    +  .++.||+||||||+.++.|++   +|.+.+++++...
T Consensus       228 ~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pi---pG~~~pgV~~~~~  304 (985)
T TIGR01372       228 MPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVF---ANNDRPGVMLAGA  304 (985)
T ss_pred             CCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCC---CCCCCCCcEEchH
Confidence            4 59999998998886543211110          1    1  268999999999999988887   7777788887654


Q ss_pred             HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ....   .......++++++|||+|++++|+|..|.+.|. .|+++++.+.+         ...+.+.+++.||++++++
T Consensus       305 ~~~~---l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~~  372 (985)
T TIGR01372       305 ARTY---LNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTGH  372 (985)
T ss_pred             HHHH---HHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcCC
Confidence            4322   111111257999999999999999999999995 57888766433         2235567889999999999


Q ss_pred             ceEEEEEcCCCcEEEEEeC----CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcc-----cCCCCCeEEEe
Q 011700          226 VLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRL-----QSSNSSVYAVG  295 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~----~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l-----~t~~~~IyA~G  295 (479)
                      .+.+++.  ++.+..|++.    +++++++|.|+++.|++||+++... +..     +..|+..     .|+.|+||++|
T Consensus       373 ~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaaG  445 (985)
T TIGR01372       373 VVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILAG  445 (985)
T ss_pred             eEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEee
Confidence            9999975  3444455543    4568999999999999999998753 221     2222221     37899999999


Q ss_pred             eeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      ||++..           .+..|..+|+.|+..++
T Consensus       446 D~~g~~-----------~~~~A~~eG~~Aa~~i~  468 (985)
T TIGR01372       446 AANGLF-----------GLAAALADGAAAGAAAA  468 (985)
T ss_pred             ccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence            999753           35678999999998875

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.95  E-value=5.7e-27  Score=238.23  Aligned_cols=291  Identities=22%  Similarity=0.302  Sum_probs=189.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHH--cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK--RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY   81 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (479)
                      .++|+||||||||++||..|++  .|++   |+|+|+.+. +|.       ++........+..     ......+..++
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~-pgG-------lvr~gvaP~~~~~-----k~v~~~~~~~~   89 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPT-PFG-------LVRSGVAPDHPET-----KNVTNQFSRVA   89 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCC-Ccc-------eEeeccCCCcchh-----HHHHHHHHHHH
Confidence            4789999999999999999987  4555   999999974 332       2211110111100     00112234456


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHH-------HHHH
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLAD-------ANRL  153 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~-------~~~l  153 (479)
                      ...+++++.+..+      ++.+.+++- ...||+||||||+.+ +.+++   ||.+.++++...++..       ...+
T Consensus        90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~I---pG~d~~gV~~a~~fl~~~ng~~d~~~~  159 (491)
T PLN02852         90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLGI---PGEDLPGVLSAREFVWWYNGHPDCVHL  159 (491)
T ss_pred             HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCCC---CCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence            6778998876443      222333332 247999999999985 55555   7877788887655421       1111


Q ss_pred             HHHHhcCCCCCEEEECCChHHHHHHHHHhhC--------------------C-CeEEEEeecCccccccCCHHHH-----
Q 011700          154 VNVMKSCSGGNAVVIGGGYIGMECAASLVIN--------------------K-INVTMVFPEAHCMARLFTPKIA-----  207 (479)
Q Consensus       154 ~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--------------------g-~~Vtlv~~~~~~l~~~~~~~~~-----  207 (479)
                      ...+  ..+++++|||+|++|+|+|..|.+.                    + .+|+++.|+...-..+-..|+.     
T Consensus       160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l  237 (491)
T PLN02852        160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL  237 (491)
T ss_pred             hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence            0001  1478999999999999999998775                    5 4699998876321111111111     


Q ss_pred             --------------------------------HHHHHHHHh---------CCcEEEcCCceEEEEEc--CCCcEEEEEeC
Q 011700          208 --------------------------------SYYEEYYKS---------KGVKFVKGTVLSSFDVD--SNGKVVAVNLR  244 (479)
Q Consensus       208 --------------------------------~~~~~~l~~---------~GV~i~~~~~v~~i~~~--~~g~v~~v~~~  244 (479)
                                                      +.+.+...+         ++|.|++...+.+|..+  +++++..+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~  317 (491)
T PLN02852        238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE  317 (491)
T ss_pred             CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence                                            122222222         57999999999999742  23567666653


Q ss_pred             -----------------CC--cEEeccEEEEecCCC--CChhh-hhc--ccc-cccCcEEEcCcccCCCCCeEEEeeecc
Q 011700          245 -----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG--QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       245 -----------------~g--~~i~~D~Vi~a~G~~--p~~~l-~~~--~~~-~~~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                                       +|  +++++|.||.++|++  |...+ +..  ++. ..+|.|.+|+.++|+.|+|||+|||..
T Consensus       318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~  397 (491)
T PLN02852        318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR  397 (491)
T ss_pred             EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence                             12  258999999999998  55553 222  233 357899999888999999999999998


Q ss_pred             ccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          300 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      .|.         ..+..++.+|+.++++|...
T Consensus       398 Gp~---------gvI~t~~~dA~~ta~~i~~d  420 (491)
T PLN02852        398 GPT---------GIIGTNLTCAEETVASIAED  420 (491)
T ss_pred             CCC---------CeeeecHhhHHHHHHHHHHH
Confidence            765         24556777888888888643

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.4e-28  Score=226.05  Aligned_cols=271  Identities=23%  Similarity=0.313  Sum_probs=198.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .|||+||||||||-+||.+.+|.|.+.+-+  -|+-     .     ...+..-...++.......|......+++..++
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerf-----G-----GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~  278 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERF-----G-----GQVLDTMGIENFISVPETEGPKLAAALEAHVKQ  278 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhh-----C-----CeeccccchhheeccccccchHHHHHHHHHHhh
Confidence            589999999999999999999999874211  1111     1     001111112222222222233333445666778


Q ss_pred             cCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      +.|+++...++..+.+.     ...|.+.+|..+.++.+|||||++.+...+||-......+|.++.+++...       
T Consensus       279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPL-------  351 (520)
T COG3634         279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPL-------  351 (520)
T ss_pred             cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcc-------
Confidence            88998877777777663     356888999999999999999999988777433333356788887765432       


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCc
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~  237 (479)
                       +.+|+|.|||||++|+|.|..|+..-.+||+++-.+.+-       .-+.+++.++. .+++++++..-++|.. +..+
T Consensus       352 -F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~k  422 (520)
T COG3634         352 -FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKG-DGDK  422 (520)
T ss_pred             -cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEec-CCce
Confidence             268999999999999999999999989999987443321       12345555554 5799999999999986 3356


Q ss_pred             EEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccc
Q 011700          238 VVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPL  302 (479)
Q Consensus       238 v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~  302 (479)
                      ++.+...|   |+  .++-+-|++-+|..||+++++..+.. ..|-|.||.+..||+|+|||+|||+..+.
T Consensus       423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~y  493 (520)
T COG3634         423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPY  493 (520)
T ss_pred             ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCcc
Confidence            66666644   32  46778899999999999999988877 67889999999999999999999998765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.95  E-value=1.4e-26  Score=246.56  Aligned_cols=284  Identities=21%  Similarity=0.349  Sum_probs=193.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+||+||++|..|++.|++   |+++|+.+..        .+++.    ..+|.+...  ........+++++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~--------GG~l~----~gip~~~l~--~~~~~~~~~~~~~  372 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEI--------GGMLT----FGIPPFKLD--KTVLSQRREIFTA  372 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCC--------CCeee----ccCCcccCC--HHHHHHHHHHHHH
Confidence            57999999999999999999999987   9999998642        11111    112222110  1111223466788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADA--NRLVNV----  156 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~--~~l~~~----  156 (479)
                      .|++++.++.+..      .+.+.+ ....||+|++|||+.+. .+++   +|.+..++++..++...  ..+...    
T Consensus       373 ~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~i---~g~~~~gv~~a~~~l~~~~~~~~~~~~~~  442 (639)
T PRK12809        373 MGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRADL---PHEDAPGVIQALPFLTAHTRQLMGLPESE  442 (639)
T ss_pred             CCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCCC---CCCccCCcEeHHHHHHHHHHhhccCcccc
Confidence            9999999875521      111211 23469999999998743 3444   77776777653221110  001000    


Q ss_pred             ---HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          157 ---MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       157 ---l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                         +....+++++|||+|++++++|..+.++|. +||++.+++.. ++. .+.++.     .+++.||+|++++.+.+|.
T Consensus       443 ~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~~-----~a~~eGv~~~~~~~~~~i~  516 (639)
T PRK12809        443 EYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEVV-----NAREEGVEFQFNVQPQYIA  516 (639)
T ss_pred             ccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHHH-----HHHHcCCeEEeccCCEEEE
Confidence               011246899999999999999999888884 89999987654 442 222222     3467899999999999998


Q ss_pred             EcCCCcEEEEEe---C------CC-----------cEEeccEEEEecCCCCCh-hhhhc-cccc-ccCcEEEcC----cc
Q 011700          232 VDSNGKVVAVNL---R------DG-----------NRLPTDMVVVGIGIRPNT-SLFEG-QLTL-EKGGIKVTG----RL  284 (479)
Q Consensus       232 ~~~~g~v~~v~~---~------~g-----------~~i~~D~Vi~a~G~~p~~-~l~~~-~~~~-~~g~i~Vd~----~l  284 (479)
                      .++++++..+.+   .      +|           .++++|.||+|+|++|+. .+++. ++.. .+|.|.||+    ++
T Consensus       517 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~  596 (639)
T PRK12809        517 CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPT  596 (639)
T ss_pred             ECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCc
Confidence            655676665532   1      12           368999999999999975 34443 4555 467899985    48


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ||+.|+|||+|||...+          .++..|+.+|+.||.+|..
T Consensus       597 ~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~  632 (639)
T PRK12809        597 QTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLT  632 (639)
T ss_pred             ccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            99999999999998764          3567899999999999864

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.94  E-value=3.7e-25  Score=233.22  Aligned_cols=281  Identities=24%  Similarity=0.327  Sum_probs=188.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+|+|||+||+||++|..|+++|++   |+++|+.+...        +++.    ..+|.+...  ........+.+.+
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~~~--~~~~~~~l~~~~~  199 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLG--------GMMR----YGIPAYRLP--REVLDAEIQRILD  199 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC--HHHHHHHHHHHHH
Confidence            46899999999999999999999986   99999886421        1111    112222110  0011122345667


Q ss_pred             cCcEEEeCceE-EEEECCCcEEEeCCCcEEEeceEEeecCCCcc-cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700           84 HGIELVLGTRV-KSADVRRKTLVTATGETISYKILIIATGARAL-KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS  161 (479)
Q Consensus        84 ~gv~~~~~~~v-~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~-~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~  161 (479)
                      .|+++..++.+ ..+..+.        ....||++|+|||+.+. .+.   +++.+..+++..-.+.  ...........
T Consensus       200 ~Gv~~~~~~~~~~~~~~~~--------~~~~~D~Vi~AtG~~~~~~~~---i~g~~~~gv~~~~~~l--~~~~~~~~~~~  266 (564)
T PRK12771        200 LGVEVRLGVRVGEDITLEQ--------LEGEFDAVFVAIGAQLGKRLP---IPGEDAAGVLDAVDFL--RAVGEGEPPFL  266 (564)
T ss_pred             CCCEEEeCCEECCcCCHHH--------HHhhCCEEEEeeCCCCCCcCC---CCCCccCCcEEHHHHH--HHhhccCCcCC
Confidence            89998888654 2211110        11258999999998753 333   3665555554332221  11110001224


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE-
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-  238 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v-  238 (479)
                      +++++|+|+|..+++++..+.+++ .+|+++.+.+.. ++. ...++     +.+.+.||+++++..+.+++.++++.+ 
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~  340 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEEI-----EEALREGVEINWLRTPVEIEGDENGATG  340 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEE
Confidence            789999999999999999998888 679999887542 222 22222     224567999999999999986444432 


Q ss_pred             ---EEEEe----CCC---------cEEeccEEEEecCCCCChhhhhc--ccccccCcEEEcC-cccCCCCCeEEEeeecc
Q 011700          239 ---VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLFEG--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       239 ---~~v~~----~~g---------~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~g~i~Vd~-~l~t~~~~IyA~GD~~~  299 (479)
                         ..+..    .+|         .++++|.||+|+|..|++.+++.  ++..++|.|.||+ +++|+.|+|||+|||+.
T Consensus       341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~  420 (564)
T PRK12771        341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVP  420 (564)
T ss_pred             EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCC
Confidence               12222    122         37999999999999999887763  4444678899998 78999999999999987


Q ss_pred             ccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          300 FPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      .+          .++..|+.+|+.||.+|..
T Consensus       421 g~----------~~v~~Av~~G~~aA~~i~~  441 (564)
T PRK12771        421 GP----------RTVTTAIGHGKKAARNIDA  441 (564)
T ss_pred             Cc----------hHHHHHHHHHHHHHHHHHH
Confidence            54          4577899999999999853

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.92  E-value=8.7e-24  Score=215.74  Aligned_cols=289  Identities=13%  Similarity=0.125  Sum_probs=185.2

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-Ccc---------------cc---ccc--CCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YER-PAL---------------SK---GYL--LPE   57 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~-~~l---------------~~---~~~--~~~   57 (479)
                      |++.++|+|||||+|||+||++|++.|++   ++++|+++...  |.. +..               +.   .+.  .+.
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~   83 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR   83 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence            34568999999999999999999999986   99999987531  110 000               00   000  000


Q ss_pred             CCCCCCCcccc--------------cCCcccCCCHhHHHHcCcE--EEeCceEEEEECCCc--EEEeCCC----cEEEec
Q 011700           58 APARLPSFHTC--------------VGANEERLTPKWYNEHGIE--LVLGTRVKSADVRRK--TLVTATG----ETISYK  115 (479)
Q Consensus        58 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~--~v~~~~g----~~~~~d  115 (479)
                      ....++.|...              ...+...++..+.++++++  ++.+++|+++++.++  .|.+.++    .+..||
T Consensus        84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d  163 (461)
T PLN02172         84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD  163 (461)
T ss_pred             hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence            00111111110              1111222344555567877  788999999987654  3444322    246799


Q ss_pred             eEEeecC--CCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEee
Q 011700          116 ILIIATG--ARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP  193 (479)
Q Consensus       116 ~lviAtG--~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~  193 (479)
                      +||+|||  +.|+.|+++|+..... ..++.+++.+.+.       +.+|+|+|||+|.+|+|+|..|++.+.+|+++.|
T Consensus       164 ~VIvAtG~~~~P~~P~ipG~~~f~G-~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r  235 (461)
T PLN02172        164 AVVVCNGHYTEPNVAHIPGIKSWPG-KQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASR  235 (461)
T ss_pred             EEEEeccCCCCCcCCCCCCcccCCc-eEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEe
Confidence            9999999  6788888744432221 2334444433322       2689999999999999999999999999999998


Q ss_pred             cCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc
Q 011700          194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL  273 (479)
Q Consensus       194 ~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~  273 (479)
                      ...+..           .+.+.....++..+..|..+..  ++   .|.+.||+.+++|.||+|||++|+.++++.    
T Consensus       236 ~~~~~~-----------~~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~----  295 (461)
T PLN02172        236 ASESDT-----------YEKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET----  295 (461)
T ss_pred             eccccc-----------cccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc----
Confidence            754211           0011112234455666666543  34   478899999999999999999999998763    


Q ss_pred             ccCcEEEcCc------ccC---C-CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          274 EKGGIKVTGR------LQS---S-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       274 ~~g~i~Vd~~------l~t---~-~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                       .+.+.+|++      .++   . .|+++.+|=....           .....+..|++.+|+.+.|..
T Consensus       296 -~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~  352 (461)
T PLN02172        296 -NGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV  352 (461)
T ss_pred             -ccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence             233444432      121   2 4899999965322           234567889999999888764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.88  E-value=5.8e-22  Score=182.06  Aligned_cols=298  Identities=20%  Similarity=0.287  Sum_probs=203.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc---cccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL---SKGYLLPEAPARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      ++++|+|||||.+|+..|..+.+. +..++|.++|+.+.+.|+ |..   ..++...+...+              . ..
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr--------------~-~a  100 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR--------------K-QA  100 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccC-cceEEeccchhhhhhccC--------------c-cc
Confidence            468999999999999999999874 556789999999987765 321   122211111000              0 00


Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCC-CCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL-SGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~-~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      -+--.+...+. ..|.+.++++++|.+.+|++++||++|||+|..-..-.+.|+ ++.+.++|.+..+..-++.....+.
T Consensus       101 ~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~  179 (446)
T KOG3851|consen  101 SLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELM  179 (446)
T ss_pred             ccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHH
Confidence            01112333333 367788899999999999999999999999988666666554 3456788988888888888888777


Q ss_pred             cCCCCCEEE---------ECCChHHHHHHH-HHhhCCC--eEEEEeecCccccccCC-HHHHHHHHHHHHhCCcEEEcCC
Q 011700          159 SCSGGNAVV---------IGGGYIGMECAA-SLVINKI--NVTMVFPEAHCMARLFT-PKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       159 ~~~~~~vvV---------IGgG~~g~E~A~-~l~~~g~--~Vtlv~~~~~~l~~~~~-~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ++...+.+.         -|+..-.+-++. .+++.|.  ++.++...  -|+..|. ...++.+++..+++.|++....
T Consensus       180 ~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~T--sl~~iFgVk~Y~~AL~k~~~~rni~vn~kr  257 (446)
T KOG3851|consen  180 NFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNT--SLPTIFGVKHYADALEKVIQERNITVNYKR  257 (446)
T ss_pred             hccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEec--CccceecHHHHHHHHHHHHHhcceEeeecc
Confidence            654444332         344444444443 3555654  34554433  2333344 5678889999999999999998


Q ss_pred             ceEEEEEcCCCcEEEEEeCC-C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcC-cccC-CCCCeEEEeeeccc
Q 011700          226 VLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAF  300 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~-~l~t-~~~~IyA~GD~~~~  300 (479)
                      .+.++..+ +.+.+--.+.+ |  ++++++++-+....++...+.++.+....|++.||. .+|. .+||||++|||.+.
T Consensus       258 nLiEV~~~-~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~  336 (446)
T KOG3851|consen  258 NLIEVRTN-DRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNL  336 (446)
T ss_pred             ceEEEecc-chhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCC
Confidence            88888763 32211111222 4  478999999999998888787777777889999994 6776 89999999999998


Q ss_pred             cccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          301 PLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       301 ~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      |..        ..++....|..++-+|+.
T Consensus       337 Pns--------KTaAAvaaq~~vv~~nl~  357 (446)
T KOG3851|consen  337 PNS--------KTAAAVAAQSPVVDKNLT  357 (446)
T ss_pred             Cch--------hhHHHHHhcCchhhhhHH
Confidence            865        444444556666767764

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.86  E-value=3.7e-21  Score=172.26  Aligned_cols=266  Identities=24%  Similarity=0.390  Sum_probs=177.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCcccccccCCCCCCCCCCcccccCCcccCCC-HhH
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPALSKGYLLPEAPARLPSFHTCVGANEERLT-PKW   80 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (479)
                      +.+|||||+||.+||.+|+.+ .+.++|.++..++..    .|..  +.+ ++.        .|..      .+.. .++
T Consensus         1 kfivvgggiagvscaeqla~~-~psa~illitass~vksvtn~~~--i~~-yle--------kfdv------~eq~~~el   62 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQL-EPSAEILLITASSFVKSVTNYQK--IGQ-YLE--------KFDV------KEQNCHEL   62 (334)
T ss_pred             CeEEEcCccccccHHHHHHhh-CCCCcEEEEeccHHHHHHhhHHH--HHH-HHH--------hcCc------cccchhhh
Confidence            479999999999999999985 567789999888641    1100  000 000        0000      0000 000


Q ss_pred             HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      ..+.. +++ + .|..++...+.+++.+|..+.|++|+++||.+|..-.    .+ -.+.+...++.+.++.++..+.. 
T Consensus        63 g~~f~-~~~-~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~k-  133 (334)
T KOG2755|consen   63 GPDFR-RFL-N-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLVK-  133 (334)
T ss_pred             cccHH-HHH-H-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHhh-
Confidence            00000 111 2 2556667788999999999999999999999997543    33 23567788888888888888874 


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC----cE--------EEcCCc--
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG----VK--------FVKGTV--  226 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G----V~--------i~~~~~--  226 (479)
                       .|.|+|+|.|-+++|++.++.  ..+|++....+.+-..+|+|.+++.+...|+..+    |.        .+.++.  
T Consensus       134 -aK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n  210 (334)
T KOG2755|consen  134 -AKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEEN  210 (334)
T ss_pred             -cceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCccccc
Confidence             799999999999999999884  6789999999888888889988887766662111    11        110000  


Q ss_pred             ---------------eEEE-------------------EEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh-c
Q 011700          227 ---------------LSSF-------------------DVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE-G  269 (479)
Q Consensus       227 ---------------v~~i-------------------~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~-~  269 (479)
                                     ...+                   .++....+......++  ..+.+|.++.++|..||+++.- .
T Consensus       211 ~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~  290 (334)
T KOG2755|consen  211 NVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNK  290 (334)
T ss_pred             CcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecC
Confidence                           0000                   0000000000000111  3578999999999999998543 3


Q ss_pred             cccc-ccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700          270 QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  301 (479)
Q Consensus       270 ~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~  301 (479)
                      .+.. ++|++.||+.|+|+.|++||+||++...
T Consensus       291 ~lq~~edggikvdd~m~tslpdvFa~gDvctt~  323 (334)
T KOG2755|consen  291 MLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT  323 (334)
T ss_pred             hhhhccccCeeehhhccccccceeeecceeccC
Confidence            3555 7899999999999999999999999843

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.85  E-value=1.3e-20  Score=194.89  Aligned_cols=299  Identities=16%  Similarity=0.242  Sum_probs=158.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC--C-C-----cccccccC--CCCCCCCCCcccc----
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE--R-P-----ALSKGYLL--PEAPARLPSFHTC----   68 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~--~-~-----~l~~~~~~--~~~~~~~~~~~~~----   68 (479)
                      ++|+|||||++||++|+.|.+.|++   ++++|+++...  |.  . +     .+...+..  +.....+++|...    
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p   78 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP   78 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence            6899999999999999999999987   89999998632  11  0 0     00000000  0001112222211    


Q ss_pred             ---cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCC-------cEEEeCC-C--cEEEeceEEeecCC--Cccccccc
Q 011700           69 ---VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRR-------KTLVTAT-G--ETISYKILIIATGA--RALKLEEF  131 (479)
Q Consensus        69 ---~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~-------~~v~~~~-g--~~~~~d~lviAtG~--~~~~~~~~  131 (479)
                         ...+...+++.+.+++++  .+..+++|.++....       ..|.+.+ |  ++-.||+||+|||.  .|..|. +
T Consensus        79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~  157 (531)
T PF00743_consen   79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P  157 (531)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred             CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence               111122334455556665  467788999887431       3455543 3  34579999999995  477664 1


Q ss_pred             CCCCCC--CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cccccC------
Q 011700          132 GLSGSD--AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMARLF------  202 (479)
Q Consensus       132 g~~g~~--~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l~~~~------  202 (479)
                      .+||.+  ...+++.+++.+.+.       +.+|+|+|||+|.+|+++|..|++...+|++..|+.. ++++..      
T Consensus       158 ~~~G~e~F~G~i~HS~~yr~~~~-------f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~  230 (531)
T PF00743_consen  158 SFPGLEKFKGEIIHSKDYRDPEP-------FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF  230 (531)
T ss_dssp             --CTGGGHCSEEEEGGG--TGGG-------GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred             hhhhhhcCCeeEEccccCcChhh-------cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence            135543  234666666655433       3689999999999999999999999999999888743 222211      


Q ss_pred             ----------------CHHHHHHH-HHHHH--------------------------------hCCcEEEcCCceEEEEEc
Q 011700          203 ----------------TPKIASYY-EEYYK--------------------------------SKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       203 ----------------~~~~~~~~-~~~l~--------------------------------~~GV~i~~~~~v~~i~~~  233 (479)
                                      +..+.+.+ .+.+.                                ...|.+.  ..|.++.. 
T Consensus       231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~~~~-  307 (531)
T PF00743_consen  231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKRFTE-  307 (531)
T ss_dssp             --------------------------------------------------------------------E--E-EEEE-S-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc-
Confidence                            11111111 11110                                0011111  12333321 


Q ss_pred             CCCcEEEEEeCCCcEE-eccEEEEecCCCCChhhhhcccc-cccCcEEEcCccc---CCCCCeEEEeeeccccccccCce
Q 011700          234 SNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGET  308 (479)
Q Consensus       234 ~~g~v~~v~~~~g~~i-~~D~Vi~a~G~~p~~~l~~~~~~-~~~g~i~Vd~~l~---t~~~~IyA~GD~~~~~~~~~g~~  308 (479)
                           ..+.+.||+++ ++|.||+|||++...++++..+. ..++.+..-.++-   ...|++..+|=+....       
T Consensus       308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g-------  375 (531)
T PF00743_consen  308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG-------  375 (531)
T ss_dssp             -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred             -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence                 15778999875 69999999999998888876533 2344333333332   2458899999764311       


Q ss_pred             eecccHHHHHHHHHHHHHHHcCCC
Q 011700          309 RRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                         ...+.+..|++.+++-+.|..
T Consensus       376 ---~~fp~~ElQArw~a~v~sG~~  396 (531)
T PF00743_consen  376 ---SIFPIFELQARWAARVFSGRV  396 (531)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTSS
T ss_pred             ---ccccccccccccccccccccc
Confidence               235568889999999887754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.84  E-value=1.4e-20  Score=189.75  Aligned_cols=288  Identities=25%  Similarity=0.310  Sum_probs=195.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+|.|||+|||||+||..|++.|+.   |+++|+.+.        ..+++..    .+|.+...  .+......+.+.+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~--------~GGll~y----GIP~~kl~--k~i~d~~i~~l~~  185 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVAL--------DGGLLLY----GIPDFKLP--KDILDRRLELLER  185 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCC--------CceeEEe----cCchhhcc--chHHHHHHHHHHH
Confidence            37899999999999999999999998   899988864        2223221    12332211  1122344567888


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc---
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS---  159 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~---  159 (479)
                      .|++|+.++++-      +.++.+. -.-.||.++++||+. |+..++   +|.+.++++...++....... .+..   
T Consensus       186 ~Gv~~~~~~~vG------~~it~~~-L~~e~Dav~l~~G~~~~~~l~i---~g~d~~gv~~A~dfL~~~~~~-~~~~~~~  254 (457)
T COG0493         186 SGVEFKLNVRVG------RDITLEE-LLKEYDAVFLATGAGKPRPLDI---PGEDAKGVAFALDFLTRLNKE-VLGDFAE  254 (457)
T ss_pred             cCeEEEEcceEC------CcCCHHH-HHHhhCEEEEeccccCCCCCCC---CCcCCCcchHHHHHHHHHHHH-Hhccccc
Confidence            999999986543      1111111 123579999999976 555554   787777776544332211111 1110   


Q ss_pred             -----CCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          160 -----CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       160 -----~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                           ..+++++|||+|.++++++....+.|. +|+.+.+...--.. ..+....+...+...++|+.+.......++..
T Consensus       255 ~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~  334 (457)
T COG0493         255 DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIG  334 (457)
T ss_pred             ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEee
Confidence                 123899999999999999999999987 67777532211000 01222344556667788999999999999998


Q ss_pred             cCCCcEEEEEeCC-------------------C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcc-cC
Q 011700          233 DSNGKVVAVNLRD-------------------G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QS  286 (479)
Q Consensus       233 ~~~g~v~~v~~~~-------------------g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l-~t  286 (479)
                      +++|++..+.+..                   |  .++++|.|+.++|+.++....   ...+.. ..|.|.+|+.+ +|
T Consensus       335 ~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t  414 (457)
T COG0493         335 NEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT  414 (457)
T ss_pred             cCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc
Confidence            7788777654311                   2  257899999999998885432   223444 56889999998 99


Q ss_pred             CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      +.|++||.||+....          ..+..|+.+|+.+|+.|-
T Consensus       415 s~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~  447 (457)
T COG0493         415 SIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID  447 (457)
T ss_pred             cCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence            999999999999863          456778999999998774

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.82  E-value=3e-19  Score=190.36  Aligned_cols=273  Identities=18%  Similarity=0.162  Sum_probs=161.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC-----------------CCcc-cccccCCCCCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE-----------------RPAL-SKGYLLPEAPARLP   63 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~-----------------~~~l-~~~~~~~~~~~~~~   63 (479)
                      .++|+|||+||||++||.+|+++|++   |+++|+.+..+  |.                 +.+. .+++.......++|
T Consensus       383 gKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~  459 (1028)
T PRK06567        383 NYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWD  459 (1028)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccch
Confidence            57999999999999999999999998   99999864311  11                 0000 11111110011111


Q ss_pred             CcccccCCcccCCCHhHHHHc--CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCCCCC
Q 011700           64 SFHTCVGANEERLTPKWYNEH--GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSDAEN  140 (479)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~--gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~~~~  140 (479)
                      .       ..... ...+.+.  +++++.++. ..     ..++.++-....||+|+||||+ .|+.+++   ||.+..+
T Consensus       460 k-------~~l~~-i~~il~~g~~v~~~~gv~-lG-----~dit~edl~~~gyDAV~IATGA~kpr~L~I---PGeda~G  522 (1028)
T PRK06567        460 K-------NNLDI-LRLILERNNNFKYYDGVA-LD-----FNITKEQAFDLGFDHIAFCIGAGQPKVLDI---ENFEAKG  522 (1028)
T ss_pred             H-------HHHHH-HHHHHhcCCceEEECCeE-EC-----ccCCHHHHhhcCCCEEEEeCCCCCCCCCCC---CCccCCC
Confidence            0       00000 1111222  466665643 21     1122222124579999999999 6888877   7777777


Q ss_pred             eEEecCHHHHHHHHHHH-----hc-CCCCCEEEECCChHHHHHHHHHhh-------------------------------
Q 011700          141 VCYLRDLADANRLVNVM-----KS-CSGGNAVVIGGGYIGMECAASLVI-------------------------------  183 (479)
Q Consensus       141 v~~~~~~~~~~~l~~~l-----~~-~~~~~vvVIGgG~~g~E~A~~l~~-------------------------------  183 (479)
                      +++..++..........     .. ..+++|+|||||++|+|+|.....                               
T Consensus       523 V~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~  602 (1028)
T PRK06567        523 VKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIA  602 (1028)
T ss_pred             eEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHH
Confidence            87655432221111000     00 025799999999999999983321                               


Q ss_pred             --------------------CCCeEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700          184 --------------------NKINVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  242 (479)
Q Consensus       184 --------------------~g~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~  242 (479)
                                          .|. |+++.|...- +|. .. -..+.+.+ ..+.||+|+.+..+.+|..+++|++..++
T Consensus       603 h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA-~~-~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~  678 (1028)
T PRK06567        603 HAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPA-YK-LNHEELIY-ALALGVDFKENMQPLRINVDKYGHVESVE  678 (1028)
T ss_pred             HHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCC-CC-CCHHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEE
Confidence                                222 8888776432 221 10 00122332 34579999999999999876667777665


Q ss_pred             eC--------------C-C---------------cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeE
Q 011700          243 LR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVY  292 (479)
Q Consensus       243 ~~--------------~-g---------------~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~Iy  292 (479)
                      +.              + +               .+++||.|++|+|..||+.+..           .+..+-++.+++|
T Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~-----------~~~s~~~d~~~~f  747 (1028)
T PRK06567        679 FENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE-----------DKYSYFGDCNPKY  747 (1028)
T ss_pred             EEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc-----------cccccccCCCCcc
Confidence            42              1 1               3689999999999999998631           1112334556666


Q ss_pred             EEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          293 AVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       293 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      +-                  ++..|+.+|+.++.+|.
T Consensus       748 ~G------------------tvv~A~as~k~~~~~i~  766 (1028)
T PRK06567        748 SG------------------SVVKALASSKEGYDAIN  766 (1028)
T ss_pred             cc------------------HHHHHHHHHHhHHHHHH
Confidence            43                  35568888888888883

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.82  E-value=2.1e-21  Score=177.85  Aligned_cols=148  Identities=31%  Similarity=0.484  Sum_probs=96.4

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCccc-CCCHhHHHHc
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEE-RLTPKWYNEH   84 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   84 (479)
                      |||||||||||++||.+|++.+.+   ++++++.+..++...++....+.....    .... . .... ....+.+...
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~~~~~~~~~~   71 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAP----HRHE-F-LPARLFKLVDQLKNR   71 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHH----HHHH-H-HHHHHGHHHHHHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccc----cccc-c-ccccccccccccccc
Confidence            799999999999999999987776   999988875444433332221110000    0000 0 0000 0122234678


Q ss_pred             CcEEEeCceEEEEECCCcEE----------EeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHH
Q 011700           85 GIELVLGTRVKSADVRRKTL----------VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV  154 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v----------~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~  154 (479)
                      ++++..++++.+++...+.+          ...++.++.||+||||||+.|+.|++   +|.+  .....+...++.++.
T Consensus        72 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i---~g~~--~~~~~~~~~~~~~~~  146 (201)
T PF07992_consen   72 GVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI---PGEE--VAYFLRGVDDAQRFL  146 (201)
T ss_dssp             THEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS---TTTT--TECBTTSEEHHHHHH
T ss_pred             eEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec---CCCc--ccccccccccccccc
Confidence            99998888999999887742          12345789999999999999988876   5542  233345666677776


Q ss_pred             HHHhcCCCCCEEEEC
Q 011700          155 NVMKSCSGGNAVVIG  169 (479)
Q Consensus       155 ~~l~~~~~~~vvVIG  169 (479)
                      .....  +++++|||
T Consensus       147 ~~~~~--~~~v~VvG  159 (201)
T PF07992_consen  147 ELLES--PKRVAVVG  159 (201)
T ss_dssp             THSST--TSEEEEES
T ss_pred             ccccc--cccccccc
Confidence            65543  45999999

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.75  E-value=6.5e-18  Score=154.96  Aligned_cols=174  Identities=25%  Similarity=0.352  Sum_probs=101.8

Q ss_pred             EEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CC----CCcc-cccccCCCCCCCCCCc---c-----------
Q 011700            8 VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YE----RPAL-SKGYLLPEAPARLPSF---H-----------   66 (479)
Q Consensus         8 vIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~----~~~l-~~~~~~~~~~~~~~~~---~-----------   66 (479)
                      +||||||+||++|.+|.++|.+.  ++|+|+++...  |.    .+.+ +.....  ....++.+   .           
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   76 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFS--SDFGLPDFESFSFDDSPEWRWPH   76 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCT--GGSS--CCCHSCHHHHHHHHHSB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCcccc--ccccCCcccccccccCCCCCCCc
Confidence            79999999999999999998864  99999986421  11    0111 000000  00111111   0           


Q ss_pred             -cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCC--CcccccccCCCC-CCCCC
Q 011700           67 -TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGA--RALKLEEFGLSG-SDAEN  140 (479)
Q Consensus        67 -~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~--~~~~~~~~g~~g-~~~~~  140 (479)
                       .....+...++..+.++++++++.+++|.++..++  ..|++.+++++.+|+||+|||.  .|+.|++   ++ .+. .
T Consensus        77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~---~g~~~~-~  152 (203)
T PF13738_consen   77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDI---PGSAFR-P  152 (203)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-E
T ss_pred             ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccc---cccccc-c
Confidence             01111112334455667899999999999987654  5778888888999999999995  6777766   55 332 4


Q ss_pred             eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .++..+..+..       ...+++|+|||+|.+|++++..|.+.|.+|+++.|++.
T Consensus       153 ~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  153 IIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             EEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             eEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            44443332222       23689999999999999999999999999999999864

...

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.72  E-value=6.3e-17  Score=158.99  Aligned_cols=248  Identities=21%  Similarity=0.269  Sum_probs=133.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccccc------cc----CCCCCCCCCCc---ccccC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKG------YL----LPEAPARLPSF---HTCVG   70 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~------~~----~~~~~~~~~~~---~~~~~   70 (479)
                      .+|+|+||.||++|+.|..|...+  ..++.++|+.+.+.|...++..+      ++    ....+...-.|   ....+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~   79 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG   79 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence            489999999999999999998876  23489999998776654332111      11    11111100000   00000


Q ss_pred             Cc-----------ccC---CCHhHHH-HcCcEEEeCceEEEEECCC------cEEEeC----CCcEEEeceEEeecCCCc
Q 011700           71 AN-----------EER---LTPKWYN-EHGIELVLGTRVKSADVRR------KTLVTA----TGETISYKILIIATGARA  125 (479)
Q Consensus        71 ~~-----------~~~---~~~~~~~-~~gv~~~~~~~v~~i~~~~------~~v~~~----~g~~~~~d~lviAtG~~~  125 (479)
                      ..           ...   .+.+|.. +..-.+..+++|.+|++..      ..|.+.    +++++.++.||||||..|
T Consensus        80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P  159 (341)
T PF13434_consen   80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP  159 (341)
T ss_dssp             -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred             ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence            00           000   1112222 2343377788999998654      245552    346899999999999999


Q ss_pred             ccccccCCCCCC-CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccccc--
Q 011700          126 LKLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--  200 (479)
Q Consensus       126 ~~~~~~g~~g~~-~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l~~--  200 (479)
                      ..|+..  .... .+.+++..++.....-     ...+++|+|||||.+|.|++..|.+.+.  +|+++.|++.+.+.  
T Consensus       160 ~iP~~~--~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~  232 (341)
T PF13434_consen  160 RIPEWF--QDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD  232 (341)
T ss_dssp             ---GGG--GGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred             CCCcch--hhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence            988763  3222 3678877665433211     1257999999999999999999988764  89999998654431  


Q ss_pred             ------cCCHHHH-------------------------------HHHHH-----HH-HhCCcEEEcCCceEEEEEcCCCc
Q 011700          201 ------LFTPKIA-------------------------------SYYEE-----YY-KSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       201 ------~~~~~~~-------------------------------~~~~~-----~l-~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                            .|+|+..                               +.+-+     .+ .+..++++.+++|+.++..+++.
T Consensus       233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~  312 (341)
T PF13434_consen  233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG  312 (341)
T ss_dssp             -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred             ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence                  2333322                               11111     11 22357899999999999866544


Q ss_pred             EEEEEeCC---C--cEEeccEEEEecCCC
Q 011700          238 VVAVNLRD---G--NRLPTDMVVVGIGIR  261 (479)
Q Consensus       238 v~~v~~~~---g--~~i~~D~Vi~a~G~~  261 (479)
                      + .+.+.+   +  .++++|.||+|||++
T Consensus       313 ~-~l~~~~~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  313 V-RLTLRHRQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             E-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred             E-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence            3 344443   2  478999999999975

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.71  E-value=3.8e-16  Score=156.96  Aligned_cols=160  Identities=18%  Similarity=0.163  Sum_probs=115.4

Q ss_pred             CCEEEECCChHHHHHH-HHHh----hCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          163 GNAVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ..=.|++.+.+|+|.+ ..++    ++|.+|+++...+..++.   .++.+.+.+.+++.|++++++++|.+++.. ++.
T Consensus       216 ~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~  291 (422)
T PRK05329        216 DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGR  291 (422)
T ss_pred             CCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCE
Confidence            3346788899999998 6665    469999999988887764   478889999999999999999999999873 455


Q ss_pred             EEEEEeCCCc--EEeccEEEEecCCCCChhhhh-----------ccc------------------ccccCcEEEcCccc-
Q 011700          238 VVAVNLRDGN--RLPTDMVVVGIGIRPNTSLFE-----------GQL------------------TLEKGGIKVTGRLQ-  285 (479)
Q Consensus       238 v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~l~~-----------~~~------------------~~~~g~i~Vd~~l~-  285 (479)
                      +..+...+++  .+++|.|++|+|+.++..+..           ..+                  ....-+|.+|+++| 
T Consensus       292 V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p  371 (422)
T PRK05329        292 VTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRP  371 (422)
T ss_pred             EEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCc
Confidence            5555555553  589999999999876654410           000                  11123466666665 


Q ss_pred             ------CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          286 ------SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       286 ------t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                            +.++|+||+|++.+.+++....    .....|+..|..|+++|..
T Consensus       372 ~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~  418 (422)
T PRK05329        372 LDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAE  418 (422)
T ss_pred             ccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHH
Confidence                  4589999999999988764211    1123567778888888764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.71  E-value=5.8e-15  Score=141.53  Aligned_cols=316  Identities=16%  Similarity=0.203  Sum_probs=191.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccc----------cccCCCCCCCCCCccc---
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSK----------GYLLPEAPARLPSFHT---   67 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~---   67 (479)
                      |++.+|+|.||-||+-|+.|..|...+.  .+...+|+.+.+.|+..++..          .+.....+...-.|..   
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~   79 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH   79 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence            6678999999999999999998887653  338999999987776433311          1111111111000000   


Q ss_pred             c--------------cCCcccCCCHhHHHHcCcEEEeCceEE---EEECCCcE---EEeCCCcEEEeceEEeecCCCccc
Q 011700           68 C--------------VGANEERLTPKWYNEHGIELVLGTRVK---SADVRRKT---LVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        68 ~--------------~~~~~~~~~~~~~~~~gv~~~~~~~v~---~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .              +-..+...+..|....--.++.+++|.   +++.+...   +.+.++..++++.|||.+|.+|.+
T Consensus        80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I  159 (436)
T COG3486          80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI  159 (436)
T ss_pred             HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence            0              000001112234444445677788888   44444332   445666789999999999999999


Q ss_pred             ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC----CCeEEEEeecCccccc---
Q 011700          128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMAR---  200 (479)
Q Consensus       128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l~~---  200 (479)
                      |+.+  .....+++++...+..     ...+-...++|.|||+|-+|.|+-..|...    ..++.++.|+..++|.   
T Consensus       160 P~~f--~~l~~~~vfHss~~~~-----~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S  232 (436)
T COG3486         160 PPCF--RSLIGERVFHSSEYLE-----RHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS  232 (436)
T ss_pred             ChHH--hCcCccceeehHHHHH-----hhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccc
Confidence            9763  4444567776544321     111111234499999999999998888653    4468889998766542   


Q ss_pred             -----cCCHHHHHHH-----------------------------------HHHH--HhCCcEEEcCCceEEEEEcCCCcE
Q 011700          201 -----LFTPKIASYY-----------------------------------EEYY--KSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       201 -----~~~~~~~~~~-----------------------------------~~~l--~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                           .|.|+..+.+                                   ++.+  .+..|.++.++++..++...+|+ 
T Consensus       233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-  311 (436)
T COG3486         233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-  311 (436)
T ss_pred             hhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-
Confidence                 1222222111                                   1111  13468899999999999866675 


Q ss_pred             EEEEeC-----CCcEEeccEEEEecCCCCChh-hhh---ccccc-ccCcEEEcCcccCCC-----CCeEEEeeecccccc
Q 011700          239 VAVNLR-----DGNRLPTDMVVVGIGIRPNTS-LFE---GQLTL-EKGGIKVTGRLQSSN-----SSVYAVGDVAAFPLK  303 (479)
Q Consensus       239 ~~v~~~-----~g~~i~~D~Vi~a~G~~p~~~-l~~---~~~~~-~~g~i~Vd~~l~t~~-----~~IyA~GD~~~~~~~  303 (479)
                      ..+.+.     +.++++.|.||+|||++...+ +++   ..+.. ++|...|++.++...     -.||+.|-+......
T Consensus       312 ~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi  391 (436)
T COG3486         312 YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI  391 (436)
T ss_pred             EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc
Confidence            344442     225789999999999985554 433   23455 678899998766521     369999877654321


Q ss_pred             ccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          304 LLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       304 ~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                        |.    +....+..-+..+++.+++..
T Consensus       392 --g~----pdLsl~a~Raa~I~~~L~g~~  414 (436)
T COG3486         392 --GA----PDLSLGAWRAAVILNSLLGRE  414 (436)
T ss_pred             --CC----ccchHHHHHHHHHHHHHhCcC
Confidence              22    122233334445567777754

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.70  E-value=5.1e-17  Score=169.38  Aligned_cols=285  Identities=20%  Similarity=0.281  Sum_probs=165.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|.|||.|||||+||-+|.+.|+.   |++.|+....        .+++.    ..+|.+...  .....+-.+++.+
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~--------ggll~----ygipnmkld--k~vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRV--------GGLLM----YGIPNMKLD--KFVVQRRVDLLEQ 1847 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCc--------Cceee----ecCCccchh--HHHHHHHHHHHHh
Confidence            47899999999999999999999997   8999998642        22221    122322110  0011233456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHHh----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK----  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~----  158 (479)
                      .||+|+.++++-      +.+.. ++-.-.+|.+|+|+|++ |+.+|+   ||.+..++++.-.+.... -+..+.    
T Consensus      1848 egi~f~tn~eig------k~vs~-d~l~~~~daiv~a~gst~prdlpv---~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIG------KHVSL-DELKKENDAIVLATGSTTPRDLPV---PGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred             hCceEEeecccc------ccccH-HHHhhccCeEEEEeCCCCCcCCCC---CCccccccHHHHHHHHHh-HHhhhccccc
Confidence            899999886542      22222 33334689999999987 777777   888877775433222211 011111    


Q ss_pred             ----cCCCCCEEEECCChHHHHHHHHHhhCCCe-EEEEe--ecC-------cccc---ccCCHHH-HHHHHHHHHhCCcE
Q 011700          159 ----SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVF--PEA-------HCMA---RLFTPKI-ASYYEEYYKSKGVK  220 (479)
Q Consensus       159 ----~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~--~~~-------~~l~---~~~~~~~-~~~~~~~l~~~GV~  220 (479)
                          +..+|+|+|||||..|-+|...-.+.|++ |--++  +.+       .++|   +.|--+. .+...+.   .|-+
T Consensus      1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~---~g~d 1993 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH---YGSD 1993 (2142)
T ss_pred             cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHH---hCCC
Confidence                12689999999999999998888888764 32222  111       1111   1111111 1111211   1222


Q ss_pred             EEcCCc-eEEEEEcCCCcEEEEE------------------eCC-CcEEeccEEEEecCCCCChhhhhc--cccc-ccCc
Q 011700          221 FVKGTV-LSSFDVDSNGKVVAVN------------------LRD-GNRLPTDMVVVGIGIRPNTSLFEG--QLTL-EKGG  277 (479)
Q Consensus       221 i~~~~~-v~~i~~~~~g~v~~v~------------------~~~-g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~-~~g~  277 (479)
                      .++-+. -+++..+++|.++.++                  ..+ .+.++||+|++|.|+..+-.....  .+.. .++.
T Consensus      1994 pr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsn 2073 (2142)
T KOG0399|consen 1994 PRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSN 2073 (2142)
T ss_pred             cceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCcccc
Confidence            111111 1123333333333222                  222 246899999999998765543322  3444 3344


Q ss_pred             EEE-cCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          278 IKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       278 i~V-d~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      |.. ++.+.|+++.|||+|||-....          ++..|+.+|+.+|+.+-
T Consensus      2074 i~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd 2116 (2142)
T KOG0399|consen 2074 ILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVD 2116 (2142)
T ss_pred             ccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHH
Confidence            443 4568889999999999987643          23346778888887653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.67  E-value=7.9e-16  Score=156.74  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=115.9

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCCCCCCCCCCcccc------cCCc
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLPEAPARLPSFHTC------VGAN   72 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~~~~~~~~~~~~~------~~~~   72 (479)
                      ++++||+|||||++|+++|..|.++|.+.  ++++|++....  |....... .+-.+.....+|.+...      ....
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~   83 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE   83 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence            45689999999999999999999999876  99999996421  11100000 00001111122322221      0011


Q ss_pred             ccCCCHhHHHHcCcE--EEeCceEEEEECCC----cEEEeCCCcE--EEeceEEeecC--CCcccccccCCCCCCC--CC
Q 011700           73 EERLTPKWYNEHGIE--LVLGTRVKSADVRR----KTLVTATGET--ISYKILIIATG--ARALKLEEFGLSGSDA--EN  140 (479)
Q Consensus        73 ~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~----~~v~~~~g~~--~~~d~lviAtG--~~~~~~~~~g~~g~~~--~~  140 (479)
                      ...+...++++++++  +...+.|..++.+.    .+|+++++.+  +.+|+||+|||  +.|+.|++   +|.+.  ..
T Consensus        84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~---~G~~~f~g~  160 (443)
T COG2072          84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF---AGLDEFKGR  160 (443)
T ss_pred             HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC---CCccCCCce
Confidence            123344556666543  23334444454433    3566766654  56999999999  55777777   55442  22


Q ss_pred             eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +++..+..+.+.       ..+|+|+|||+|.+|++++..|.+.|.+||++.|++..
T Consensus       161 ~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         161 ILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             EEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            344444333333       26999999999999999999999999999999998754

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.64  E-value=1.1e-14  Score=141.44  Aligned_cols=197  Identities=21%  Similarity=0.328  Sum_probs=115.9

Q ss_pred             EEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHH--------HHh---cCCCCCEEEE---CCCh---
Q 011700          111 TISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVN--------VMK---SCSGGNAVVI---GGGY---  172 (479)
Q Consensus       111 ~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~--------~l~---~~~~~~vvVI---GgG~---  172 (479)
                      ++....+|+|||-.++.+....--|. ..++|.+.-   +.+++..        .++   -.+||+|++|   |+-.   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence            56788999999988765432110111 123443321   2223221        011   1257888875   5543   


Q ss_pred             ----H-------HHHHHHHHhhC--CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          173 ----I-------GMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       173 ----~-------g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                          .       ++.-|+...++  ..+|++....-+-    +....-+++.+.-++.||+|+.+. +.+|...++++ .
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l  448 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L  448 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence                1       22333444433  4578887766443    344445566666668899999885 67777655665 2


Q ss_pred             EEEeCC---C--cEEeccEEEEecCCCCChhhhh----ccccc-ccCcEEEc-Ccc---cCCCCCeEEEeeecccccccc
Q 011700          240 AVNLRD---G--NRLPTDMVVVGIGIRPNTSLFE----GQLTL-EKGGIKVT-GRL---QSSNSSVYAVGDVAAFPLKLL  305 (479)
Q Consensus       240 ~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~~----~~~~~-~~g~i~Vd-~~l---~t~~~~IyA~GD~~~~~~~~~  305 (479)
                      .|...|   |  .++++|+|++++|..|.....+    .++.. ++|++... +.+   +|+.++||.+|-|.++..   
T Consensus       449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd---  525 (622)
T COG1148         449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD---  525 (622)
T ss_pred             EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc---
Confidence            354444   3  4789999999999998654222    23544 56777665 444   468899999998887643   


Q ss_pred             CceeecccHHHHHHHHHHHHHH
Q 011700          306 GETRRLEHVDSARKSAKHAVAA  327 (479)
Q Consensus       306 g~~~~~~~~~~A~~~g~~aa~~  327 (479)
                              ++.++.||..||..
T Consensus       526 --------I~~siaqa~aAA~k  539 (622)
T COG1148         526 --------IADSIAQAKAAAAK  539 (622)
T ss_pred             --------HHHHHHHhHHHHHH
Confidence                    44455555555443

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.62  E-value=1.7e-14  Score=144.82  Aligned_cols=272  Identities=16%  Similarity=0.203  Sum_probs=148.8

Q ss_pred             cCeEEEECCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFT-KRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      .++|+||||||||++||.+|+ +.|++   |+|+|+.+.+ |       |++........+...     .....+...+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~p-g-------GLvR~GVaPdh~~~k-----~v~~~f~~~~~  102 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNP-Y-------GLIRYGVAPDHIHVK-----NTYKTFDPVFL  102 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCC-c-------cEEEEeCCCCCccHH-----HHHHHHHHHHh
Confidence            468999999999999999875 45665   9999999752 2       222211111111110     01112223344


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCC------C-CCC----CCCeEEecCH----
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL------S-GSD----AENVCYLRDL----  147 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~------~-g~~----~~~v~~~~~~----  147 (479)
                      ..+++++.+..+-      ..+..++ -.-.||.||+|||+.+..+++++-      . |.+    ..++|..+++    
T Consensus       103 ~~~v~f~gnv~VG------~Dvt~ee-L~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY  175 (506)
T PTZ00188        103 SPNYRFFGNVHVG------VDLKMEE-LRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY  175 (506)
T ss_pred             hCCeEEEeeeEec------CccCHHH-HHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence            5677777442221      1111111 123799999999999765442110      0 222    2344332221    


Q ss_pred             ---HHH---HHHHHHHhcC-CCCCEEEECCChHHHHHHHHHh--------------------hCC-CeEEEEeecCccc-
Q 011700          148 ---ADA---NRLVNVMKSC-SGGNAVVIGGGYIGMECAASLV--------------------INK-INVTMVFPEAHCM-  198 (479)
Q Consensus       148 ---~~~---~~l~~~l~~~-~~~~vvVIGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l-  198 (479)
                         .+.   .....++... ..++++|||.|++++++|..|.                    +.+ .+|+++.|+...- 
T Consensus       176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa  255 (506)
T PTZ00188        176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS  255 (506)
T ss_pred             cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence               111   0111122111 3578999999999999999753                    223 3688888772110 


Q ss_pred             -------------cc---cCC-HH-----------------------HHHHHHHHHH----------hCCcEEEcCCceE
Q 011700          199 -------------AR---LFT-PK-----------------------IASYYEEYYK----------SKGVKFVKGTVLS  228 (479)
Q Consensus       199 -------------~~---~~~-~~-----------------------~~~~~~~~l~----------~~GV~i~~~~~v~  228 (479)
                                   +.   .++ .+                       ..+.+.++..          .+-+.+++...+.
T Consensus       256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~  335 (506)
T PTZ00188        256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR  335 (506)
T ss_pred             CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence                         00   000 00                       1112333321          1346788888888


Q ss_pred             EEEEcCCCcEEEEEeC-----------CC--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccC--CCCCeEE
Q 011700          229 SFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS--SNSSVYA  293 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~-----------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t--~~~~IyA  293 (479)
                      +|.. .++++..+++.           .|  +++++|+|+-++|++...- .  ++.++ ..+.+. ..+.  ..|++|+
T Consensus       336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~-~--g~pFd-~~~~n~-~grv~~~~~g~Y~  409 (506)
T PTZ00188        336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF-A--ENLYN-QSVQMF-KEDIGQHKFAIFK  409 (506)
T ss_pred             EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC-C--CCCcc-ccCCCC-CCcccCCCCCcEE
Confidence            8875 34677777665           23  3699999999999886531 1  12222 112111 1111  3699999


Q ss_pred             Eeeeccccccc
Q 011700          294 VGDVAAFPLKL  304 (479)
Q Consensus       294 ~GD~~~~~~~~  304 (479)
                      +|.+...|...
T Consensus       410 ~GWiKrGP~Gv  420 (506)
T PTZ00188        410 AGWFDKGPKGN  420 (506)
T ss_pred             eeecCcCCCce
Confidence            99999887654

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.61  E-value=6.6e-15  Score=139.15  Aligned_cols=153  Identities=22%  Similarity=0.320  Sum_probs=96.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+|.|||+||||+++|..|.++ ++..+|+++|+.|. ||.       +.......+.|....     ....+.+.+++
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~   85 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH   85 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence            46899999999999999999996 55677999999985 332       222222222232211     11233445556


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----  157 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l-----  157 (479)
                      ....++.+..+-      ..+.+ ..-+-.||.+|||+|+. ++.+.+   ||.+..+|++.+.+-.   +++-+     
T Consensus        86 ~rfsf~gNv~vG------~dvsl-~eL~~~ydavvLaYGa~~dR~L~I---PGe~l~~V~Sarefv~---Wyng~P~~~~  152 (468)
T KOG1800|consen   86 ERFSFFGNVKVG------RDVSL-KELTDNYDAVVLAYGADGDRRLDI---PGEELSGVISAREFVG---WYNGLPENQN  152 (468)
T ss_pred             cceEEEecceec------ccccH-HHHhhcccEEEEEecCCCCcccCC---CCcccccceehhhhhh---hccCCCcccc
Confidence            667777664331      11111 11123699999999987 666666   8877788876554321   11100     


Q ss_pred             --hcCCCCCEEEECCChHHHHHHHHHhh
Q 011700          158 --KSCSGGNAVVIGGGYIGMECAASLVI  183 (479)
Q Consensus       158 --~~~~~~~vvVIGgG~~g~E~A~~l~~  183 (479)
                        .+....+++|||.|.+++++|..|..
T Consensus       153 le~dls~~~vvIvG~GNVAlDvARiLls  180 (468)
T KOG1800|consen  153 LEPDLSGRKVVIVGNGNVALDVARILLS  180 (468)
T ss_pred             cCcccccceEEEEccCchhhhhhhhhhC
Confidence              11247899999999999999988753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.61  E-value=1.2e-14  Score=146.22  Aligned_cols=240  Identities=16%  Similarity=0.174  Sum_probs=145.4

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------ccccccc--CCCCCCCCCCccccc
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERP--------ALSKGYL--LPEAPARLPSFHTCV   69 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~--------~l~~~~~--~~~~~~~~~~~~~~~   69 (479)
                      +...+|+|||||||||.+|+.|.+.|++   ++++|+.+...  |..+        .+.+.+.  .+.....++.|.+..
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence            3468999999999999999999999988   89999997632  1111        1111111  111222333333322


Q ss_pred             CC--------cccCCCHhHHHHcCc--EEEeCceEEEEECCC---cEEEeCCC----cEEEeceEEeecCCC--cccccc
Q 011700           70 GA--------NEERLTPKWYNEHGI--ELVLGTRVKSADVRR---KTLVTATG----ETISYKILIIATGAR--ALKLEE  130 (479)
Q Consensus        70 ~~--------~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~---~~v~~~~g----~~~~~d~lviAtG~~--~~~~~~  130 (479)
                      ..        +...++..+.++.++  .+..+++|..++...   ..|.+.++    ++..||.|++|||-.  |+.|.+
T Consensus        81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence            10        111233344455554  466677777777654   34555333    467899999999977  777766


Q ss_pred             cCCC-CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--CccccccCCHHHH
Q 011700          131 FGLS-GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCMARLFTPKIA  207 (479)
Q Consensus       131 ~g~~-g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l~~~~~~~~~  207 (479)
                      ++.. ..-...+++.+++...+.       +.+|+|+|||.|.+|+|++..++....+|++..+.  ....+.    .  
T Consensus       161 ~g~~~~~f~G~~iHS~~Yk~~e~-------f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~----~--  227 (448)
T KOG1399|consen  161 PGPGIESFKGKIIHSHDYKSPEK-------FRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPP----E--  227 (448)
T ss_pred             CCCchhhcCCcceehhhccCccc-------ccCceEEEECCCccHHHHHHHHHHhccCcceeeeccccccccc----c--
Confidence            3310 011234555555543333       25799999999999999999999998888887651  011110    0  


Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcc
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ  270 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~  270 (479)
                       .     ...++..+..  +..+.  +++   .+.+.++....+|.+++|||..-...+++..
T Consensus       228 -~-----~~~~~~~~~~--i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~  277 (448)
T KOG1399|consen  228 -I-----LGENLWQVPS--IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETL  277 (448)
T ss_pred             -e-----eecceEEccc--ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccC
Confidence             0     0112222222  44443  233   3445667788999999999999887776643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.51  E-value=2.1e-13  Score=105.03  Aligned_cols=80  Identities=36%  Similarity=0.592  Sum_probs=74.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  243 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~  243 (479)
                      +++|||+|++|+|+|..|.++|.+||++++++.+++ .+++++.+.+.+.++++||++++++.+++++.++++ +. |.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence            589999999999999999999999999999999995 589999999999999999999999999999987666 65 888


Q ss_pred             CCC
Q 011700          244 RDG  246 (479)
Q Consensus       244 ~~g  246 (479)
                      +||
T Consensus        78 ~~g   80 (80)
T PF00070_consen   78 EDG   80 (80)
T ss_dssp             ETS
T ss_pred             ecC
Confidence            876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.27  E-value=1.3e-09  Score=107.99  Aligned_cols=309  Identities=19%  Similarity=0.282  Sum_probs=163.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCc--c----cccc--cC-CCCCCCCCCcccc---
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPA--L----SKGY--LL-PEAPARLPSFHTC---   68 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~--l----~~~~--~~-~~~~~~~~~~~~~---   68 (479)
                      ++|+|||+|++|++.|.+|.+.-.....|.|+|+.+..    +|....  .    ...-  .. ++..+++-.+...   
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            79999999999999999999975545559999999763    343211  0    0000  00 1101000000000   


Q ss_pred             -------cCCc-------------ccCCCHhHHHHcC---cEEEeCceEEEEECC----CcEEEeCCCcEEEeceEEeec
Q 011700           69 -------VGAN-------------EERLTPKWYNEHG---IELVLGTRVKSADVR----RKTLVTATGETISYKILIIAT  121 (479)
Q Consensus        69 -------~~~~-------------~~~~~~~~~~~~g---v~~~~~~~v~~i~~~----~~~v~~~~g~~~~~d~lviAt  121 (479)
                             ...+             ...++..++++..   +.++.. +++++...    ...+...+|....+|-+|+||
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                   0000             0011111222222   555543 55555444    234566788888999999999


Q ss_pred             CCCcccccc--cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcc
Q 011700          122 GARALKLEE--FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC  197 (479)
Q Consensus       122 G~~~~~~~~--~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~  197 (479)
                      |..+-.++.  ..+++.  ..  +..+...+..+ +.+.  ...+|+|+|+|...++....|.++|.  ++|++.|+. +
T Consensus       161 gh~~~~~~~~~~~~~~~--~~--~ia~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l  232 (474)
T COG4529         161 GHSAPPADPAARDLKGS--PR--LIADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-L  232 (474)
T ss_pred             cCCCCCcchhhhccCCC--cc--eeccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-c
Confidence            976533322  001111  11  12222122111 1111  24569999999999999999999875  688888773 1


Q ss_pred             ccc------------cCC--------------------------------------------------------------
Q 011700          198 MAR------------LFT--------------------------------------------------------------  203 (479)
Q Consensus       198 l~~------------~~~--------------------------------------------------------------  203 (479)
                      ++.            ..+                                                              
T Consensus       233 ~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~d  312 (474)
T COG4529         233 VPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWD  312 (474)
T ss_pred             ccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHH
Confidence            111            000                                                              


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C-cEEeccEEEEecCCCCChh-----h--
Q 011700          204 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G-NRLPTDMVVVGIGIRPNTS-----L--  266 (479)
Q Consensus       204 -------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g-~~i~~D~Vi~a~G~~p~~~-----l--  266 (479)
                             +++...+.+.+.+.-++++.+ ++..|.....+..+.+....  . +++++|.||-|+|..+...     +  
T Consensus       313 vHr~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~  391 (474)
T COG4529         313 VHRFRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLR  391 (474)
T ss_pred             HHHhhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHH
Confidence                   001111111111112334433 35555543444322333222  2 4789999999999766432     2  


Q ss_pred             --hhccccc---ccCcEEEcCcccC------CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          267 --FEGQLTL---EKGGIKVTGRLQS------SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       267 --~~~~~~~---~~g~i~Vd~~l~t------~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                        .+.++..   .+.+|.|++..+.      ..++.||+|-.+.....      -+..++.-..|+..+|..++
T Consensus       392 sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~------ei~~vP~v~~qa~~~A~~l~  459 (474)
T COG4529         392 SLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFW------EIDGVPDVRVQAARLAAQLA  459 (474)
T ss_pred             HHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCchh------hhccChHHHHHHHHHHHHHh
Confidence              2334433   3568999988764      46799999988865421      11233444556777777666

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.21  E-value=3.5e-10  Score=109.32  Aligned_cols=86  Identities=13%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             HHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccE
Q 011700          175 MECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM  253 (479)
Q Consensus       175 ~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~  253 (479)
                      -++-..+.++|.+...- ...+++|. .-...+.+.+.+.+++.||+++++++|.+++.++  ....+.+.+|+++.||.
T Consensus        82 ~d~i~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~  158 (408)
T COG2081          82 EDFIDWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDS  158 (408)
T ss_pred             HHHHHHHHhcCCeeEEc-cCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccE
Confidence            34455566667665443 33455554 2346788899999999999999999999999733  34568888998999999


Q ss_pred             EEEecC--CCCC
Q 011700          254 VVVGIG--IRPN  263 (479)
Q Consensus       254 Vi~a~G--~~p~  263 (479)
                      +|+|+|  .-|.
T Consensus       159 lilAtGG~S~P~  170 (408)
T COG2081         159 LILATGGKSWPK  170 (408)
T ss_pred             EEEecCCcCCCC
Confidence            999999  5553

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.18  E-value=4.2e-09  Score=105.02  Aligned_cols=123  Identities=17%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhh-----------
Q 011700          202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFE-----------  268 (479)
Q Consensus       202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~-----------  268 (479)
                      ....+.+.+.+.+++.|++++.+++|.+++. +++.+..+.+.++  .++.+|.+|+|+|.--...+.+           
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~  339 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFG  339 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccC
Confidence            3567788889999999999999999999987 4566666776665  4899999999999772222211           


Q ss_pred             cccc------------------cccCcEEEcCcccC-----CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700          269 GQLT------------------LEKGGIKVTGRLQS-----SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV  325 (479)
Q Consensus       269 ~~~~------------------~~~g~i~Vd~~l~t-----~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  325 (479)
                      ..+.                  .-.-+|.+|+++|.     .++|+||+|-+.+..+++...    -....|+..|-.|+
T Consensus       340 L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~g----cG~GVai~Ta~~aa  415 (419)
T TIGR03378       340 LDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEG----CGSGVAVSTALHAA  415 (419)
T ss_pred             CCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcC----CCchhHHHHHHHHH
Confidence            0010                  01236889999983     389999999999987654311    11235677888888


Q ss_pred             HHHc
Q 011700          326 AAIM  329 (479)
Q Consensus       326 ~~i~  329 (479)
                      ++|.
T Consensus       416 ~~i~  419 (419)
T TIGR03378       416 EQII  419 (419)
T ss_pred             HhhC
Confidence            8763

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK09897 hypothetical protein; Provisional

Probab=99.18  E-value=1.3e-08  Score=105.65  Aligned_cols=167  Identities=17%  Similarity=0.216  Sum_probs=91.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCcccccccCCCCCCCC----CCcccc--------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA----PYERPALSKGYLLPEAPARL----PSFHTC--------   68 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~----~~~~~~l~~~~~~~~~~~~~----~~~~~~--------   68 (479)
                      ++|+||||||+|+++|.+|.+.+ ...+|+|||++...    +|.....+.-++........    +.|...        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~-~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~   80 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQ-TPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH   80 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcC-CCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence            69999999999999999999864 34569999997542    23221111101100000000    000000        


Q ss_pred             ---cC-------C-cc------cCCCHh-------HHHHcC--cEEEeCceEEEEECCCcE--EEeCC-CcEEEeceEEe
Q 011700           69 ---VG-------A-NE------ERLTPK-------WYNEHG--IELVLGTRVKSADVRRKT--LVTAT-GETISYKILII  119 (479)
Q Consensus        69 ---~~-------~-~~------~~~~~~-------~~~~~g--v~~~~~~~v~~i~~~~~~--v~~~~-g~~~~~d~lvi  119 (479)
                         .+       . ..      ..++..       .+...|  +.++.+++|++++.+...  +.+.+ +..+.+|+||+
T Consensus        81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL  160 (534)
T PRK09897         81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI  160 (534)
T ss_pred             HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence               00       0 00      000111       122344  677778899999776543  44434 46789999999


Q ss_pred             ecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC
Q 011700          120 ATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN  184 (479)
Q Consensus       120 AtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~  184 (479)
                      |||..+..++    ++ . ..  ++.+..+...    +...++.+|+|+|.|.++++.+..|...
T Consensus       161 AtGh~~p~~~----~~-~-~~--yi~~pw~~~~----~~~i~~~~V~I~GtGLt~iD~v~~Lt~~  213 (534)
T PRK09897        161 ATGHVWPDEE----EA-T-RT--YFPSPWSGLM----EAKVDACNVGIMGTSLSGLDAAMAVAIQ  213 (534)
T ss_pred             CCCCCCCCCC----hh-h-cc--ccCCCCcchh----hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence            9997532111    11 1 11  1112111111    1112468999999999999999888755

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.09  E-value=7.6e-10  Score=109.44  Aligned_cols=223  Identities=19%  Similarity=0.183  Sum_probs=108.8

Q ss_pred             cCcEEEeCceEEEEECCCc-EE---EeC-C-C--cEEEeceEEeecCCCccccccc-CCCCCCCCCe-------EEecCH
Q 011700           84 HGIELVLGTRVKSADVRRK-TL---VTA-T-G--ETISYKILIIATGARALKLEEF-GLSGSDAENV-------CYLRDL  147 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~-~v---~~~-~-g--~~~~~d~lviAtG~~~~~~~~~-g~~g~~~~~v-------~~~~~~  147 (479)
                      .+|+++.++.+..+-.+++ .+   .+. . +  ..+.++.+|||||.--..-..- +-.+...+++       ..+.++
T Consensus       147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl  226 (518)
T COG0029         147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL  226 (518)
T ss_pred             CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence            6999999988777766665 22   232 2 2  4678899999999653211110 0001110110       011111


Q ss_pred             HHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEE-eecCccccc------cCCHH-HHHHHHHHHHhCCc
Q 011700          148 ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV-FPEAHCMAR------LFTPK-IASYYEEYYKSKGV  219 (479)
Q Consensus       148 ~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv-~~~~~~l~~------~~~~~-~~~~~~~~l~~~GV  219 (479)
                      +        +.++.| +.+-.+ +--..-+.++++..|.  .++ ....++++.      ..+.+ ++..+...+++.|-
T Consensus       227 E--------FvQFHP-T~l~~~-~~~~~LiSEAVRGEGA--~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~  294 (518)
T COG0029         227 E--------FVQFHP-TALYIP-QRRAFLISEAVRGEGA--ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGA  294 (518)
T ss_pred             c--------ceeecc-ceecCC-CCccceeehhhhcCcc--EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCC
Confidence            0        001111 122222 1111122333444442  233 344566653      12333 35566777777676


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeCCCcEEec-cEEEEecCCCCChhhhhccc--ccccCcEEEcCcccCCCCCeEEEee
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGD  296 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~-D~Vi~a~G~~p~~~l~~~~~--~~~~g~i~Vd~~l~t~~~~IyA~GD  296 (479)
                      +++++.+  .+..   ..   +  .  +.++. ...+...|..|..+...-..  -...|+|.||.+.||+.|++||+|.
T Consensus       295 ~V~LD~s--~~~~---~~---~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGE  362 (518)
T COG0029         295 DVFLDIS--HIPG---DF---F--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGE  362 (518)
T ss_pred             eEEEecc--CCCc---hh---h--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeee
Confidence            5555432  1111   00   0  0  11221 11223345555444322111  1246999999999999999999999


Q ss_pred             eccccccccCceee-cccHHHHHHHHHHHHHHHcCCC
Q 011700          297 VAAFPLKLLGETRR-LEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       297 ~~~~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      |+..-  ++|..+. -.+.-.+.--|..+|++|.+..
T Consensus       363 vA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~  397 (518)
T COG0029         363 VACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL  397 (518)
T ss_pred             ecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence            98742  2333321 1233455667788888888653

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.07  E-value=5.9e-10  Score=115.15  Aligned_cols=54  Identities=22%  Similarity=0.252  Sum_probs=38.7

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||.+.||++|++||+|+|+. ..   +|..+.- .....+...|+.|++++..
T Consensus       309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~  364 (466)
T PRK08401        309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR  364 (466)
T ss_pred             cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            56999999999999999999999974 22   2222111 2344566778888888764

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.06  E-value=4e-09  Score=110.86  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||.++++.|.+   |+|+||.+.
T Consensus        16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~   50 (541)
T PRK07804         16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL   50 (541)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence            58999999999999999999998876   999999874

>PLN02463 lycopene beta cyclase

Probab=99.06  E-value=1.8e-08  Score=102.84  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccc-cc--c-CCC-CCCCCCCccc----------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSK-GY--L-LPE-APARLPSFHT----------   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~-~~--~-~~~-~~~~~~~~~~----------   67 (479)
                      .+||+||||||||+++|..|++.|++   |+|+|+.+...+.+.. ... .+  + ..+ ....++....          
T Consensus        28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~  104 (447)
T PLN02463         28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL  104 (447)
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence            48999999999999999999998887   9999998643332110 000 00  0 000 0000111000          


Q ss_pred             --ccCCccc----CCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           68 --CVGANEE----RLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        68 --~~~~~~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                        ..+.-..    ..+.+.+.+.|++++. .+|.+++.+..  .|.+.+|.++++|.||.|+|.....
T Consensus       105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l  171 (447)
T PLN02463        105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL  171 (447)
T ss_pred             cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence              0000000    1112223456899875 48888876543  4667788899999999999987643

>TIGR00551 nadB L-aspartate oxidase

Probab=99.05  E-value=1.3e-09  Score=113.44  Aligned_cols=54  Identities=24%  Similarity=0.257  Sum_probs=39.3

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||.+.||++|++||+|+|+. ..   +|..+.- .....+.-.|+.|++++..
T Consensus       332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~g~sl~~~~v~G~~Ag~~aa~  387 (488)
T TIGR00551       332 TCGGISVDDHGRTTVPGLYAIGEVACTGL---HGANRLASNSLLECLVFGWSAAEDISR  387 (488)
T ss_pred             ecCCEEECCCCcccCCCEEECcccccccc---CcccccchhHHHHHHHHHHHHHHHHHh
Confidence            56899999999999999999999974 22   2221111 2345677788888888764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=99.03  E-value=3.2e-09  Score=99.30  Aligned_cols=124  Identities=19%  Similarity=0.262  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCCCCChhh-----------hh
Q 011700          202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSL-----------FE  268 (479)
Q Consensus       202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~~p~~~l-----------~~  268 (479)
                      +.-.+.+.+.+.+++.|.-++.+.+|.+.+. .+++++.+.+.+...  +.+|..++|+|.--...+           +.
T Consensus       256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~  334 (421)
T COG3075         256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD  334 (421)
T ss_pred             hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence            3445677888899999999999999999887 678888998888764  569999999985222111           11


Q ss_pred             ccc------------------ccccCcEEEcCcccCC-----CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHH
Q 011700          269 GQL------------------TLEKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV  325 (479)
Q Consensus       269 ~~~------------------~~~~g~i~Vd~~l~t~-----~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa  325 (479)
                      ..+                  ....=++.+|+++|-+     ..|+||||.+.+..+++.-..    ....++..|..|+
T Consensus       335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egc----GsGVaivta~~aa  410 (421)
T COG3075         335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGC----GSGVAIVTALHAA  410 (421)
T ss_pred             cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcC----CcchHHHHHHHHH
Confidence            000                  0112357788888753     579999999999877643110    0123445566666


Q ss_pred             HHHcC
Q 011700          326 AAIME  330 (479)
Q Consensus       326 ~~i~~  330 (479)
                      +.|+.
T Consensus       411 ~qi~~  415 (421)
T COG3075         411 EQIAE  415 (421)
T ss_pred             HHHHH
Confidence            66654

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.98  E-value=3e-09  Score=111.03  Aligned_cols=55  Identities=25%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||.+.||++|++||+|+|+...  ++|..+.. .....+...|+.|++++..
T Consensus       331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~  386 (510)
T PRK08071        331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILT  386 (510)
T ss_pred             EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999997521  12221111 2455677788888888864

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.96  E-value=9.2e-10  Score=110.66  Aligned_cols=118  Identities=24%  Similarity=0.376  Sum_probs=60.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCcccc------cccCC--CCCCCC----CCc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALSK------GYLLP--EAPARL----PSF   65 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~~------~~~~~--~~~~~~----~~~   65 (479)
                      |||+|||||||||+||..|++.|.+   |+|+|+++...       -.|+.++.      .+...  .....+    ..|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~---V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGAR---VLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            7999999999999999999999987   99999997621       01122211      01100  000000    000


Q ss_pred             c--------cccC------Cc------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEece
Q 011700           66 H--------TCVG------AN------------EERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKI  116 (479)
Q Consensus        66 ~--------~~~~------~~------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~  116 (479)
                      .        ...+      ..            ....+...+++.|++++.+++|.++..++..   |.+.++.++.+|+
T Consensus        78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~  157 (409)
T PF03486_consen   78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA  157 (409)
T ss_dssp             -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred             CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence            0        0000      00            0011223345789999999999999764433   5565778999999


Q ss_pred             EEeecCCCc
Q 011700          117 LIIATGARA  125 (479)
Q Consensus       117 lviAtG~~~  125 (479)
                      ||||||...
T Consensus       158 vILAtGG~S  166 (409)
T PF03486_consen  158 VILATGGKS  166 (409)
T ss_dssp             EEE----SS
T ss_pred             EEEecCCCC
Confidence            999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK08275 putative oxidoreductase; Provisional

Probab=98.95  E-value=1.2e-08  Score=107.78  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.+. ..+|+|+||.+.
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~   45 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV   45 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence            4799999999999999999998631 124999999875

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.92  E-value=3.6e-08  Score=99.78  Aligned_cols=116  Identities=21%  Similarity=0.243  Sum_probs=68.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccc-cc----cCCCCCCCCCCcc-cc-------cC-
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSK-GY----LLPEAPARLPSFH-TC-------VG-   70 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~-~~----~~~~~~~~~~~~~-~~-------~~-   70 (479)
                      ||+||||||||+++|..|++.|++   |+|||+.+..+..... +.. .+    +.......++... ..       .. 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT   77 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence            799999999999999999998887   9999998643322110 000 00    0000000111100 00       00 


Q ss_pred             -------CcccCCCHhHHHHcCcEEEeCceEEEEECC-C--cEEEeCCCcEEEeceEEeecCCCc
Q 011700           71 -------ANEERLTPKWYNEHGIELVLGTRVKSADVR-R--KTLVTATGETISYKILIIATGARA  125 (479)
Q Consensus        71 -------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~--~~v~~~~g~~~~~d~lviAtG~~~  125 (479)
                             ......+.+.+.+.+++++.+ .+..+..+ .  ..+.+.++++++++.||.|+|..+
T Consensus        78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence                   000011222334568888754 78777655 2  345666777899999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.90  E-value=1.4e-08  Score=108.08  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.  |.+   |+|||+.+.
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~   47 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI   47 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence            47999999999999999999997  776   999999864

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.87  E-value=2.1e-08  Score=105.98  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.+|.+.||++|++||+|+|+...  ++|..+.- .....+...|+.|++++..
T Consensus       356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~  411 (580)
T TIGR01176       356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAE  411 (580)
T ss_pred             cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999997421  12222111 2345566777777777654

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.86  E-value=2.5e-08  Score=110.84  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+|+||.+.
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence            47999999999999999999998877   999999864

>PRK06847 hypothetical protein; Provisional

Probab=98.86  E-value=1.5e-08  Score=102.02  Aligned_cols=124  Identities=22%  Similarity=0.333  Sum_probs=76.0

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccc----------------
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGY----------------   53 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~----------------   53 (479)
                      |.+.+||+||||||+|+++|..|++.|++   |+|+|+.+...-....+  .         -++                
T Consensus         1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~   77 (375)
T PRK06847          1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL   77 (375)
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence            77889999999999999999999999987   89999886421100000  0         000                


Q ss_pred             cCCCCC--CCCC--Cc-----cc---ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEe
Q 011700           54 LLPEAP--ARLP--SF-----HT---CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILII  119 (479)
Q Consensus        54 ~~~~~~--~~~~--~~-----~~---~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lvi  119 (479)
                      ......  ...+  .+     ..   .........+.+.+.+.+++++.++++..++.+..  .+.+.+|+++.+|.||.
T Consensus        78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847         78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence            000000  0000  00     00   00000001122333457899999999998876544  45567888899999999


Q ss_pred             ecCCCccc
Q 011700          120 ATGARALK  127 (479)
Q Consensus       120 AtG~~~~~  127 (479)
                      |+|..+..
T Consensus       158 AdG~~s~~  165 (375)
T PRK06847        158 ADGLYSKV  165 (375)
T ss_pred             CcCCCcch
Confidence            99987644

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=7.4e-08  Score=101.82  Aligned_cols=35  Identities=29%  Similarity=0.451  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+|+||.+.
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~   39 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP   39 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence            58999999999999999999998887   999999854

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.85  E-value=4.5e-08  Score=103.75  Aligned_cols=70  Identities=19%  Similarity=0.246  Sum_probs=43.7

Q ss_pred             CCCCChhhhhccc--ccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          259 GIRPNTSLFEGQL--TLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       259 G~~p~~~l~~~~~--~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      |..|....++...  ....|+|.||.+.||++|++||+|+|+...  .+|..+.- .....|...|++|++++..
T Consensus       340 G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~  412 (582)
T PRK09231        340 GVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAE  412 (582)
T ss_pred             CCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence            5555544333221  125799999999999999999999997521  12222111 2344566677777777654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.84  E-value=5.3e-08  Score=103.32  Aligned_cols=33  Identities=39%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||||||+|.||++||..+++.|.+   |+|||+.+.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~---V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLN---TAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            799999999999999999998887   999999864

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.84  E-value=5.9e-09  Score=110.55  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=78.8

Q ss_pred             CCCCEEEECCCh--HHHHHHHHHhhCCCeEEEEeecCcccccc-------------CCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          161 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARL-------------FTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       161 ~~~~vvVIGgG~--~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      .++++.|+|+++  ++.|++..+...+.+++++.+.++++...             -..++.+.+.+.+++.|++++.++
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~  235 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT  235 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence            468899999998  89999999999999888776655554321             124567778888889999999999


Q ss_pred             ceEEEEEcCCCcEEEEEeCC--Cc-EEecc-EEEEecCCCCCh
Q 011700          226 VLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNT  264 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~Vi~a~G~~p~~  264 (479)
                      .++++.. +++++..+...+  ++ .+.++ .||+|+|..++.
T Consensus       236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n  277 (574)
T PRK12842        236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD  277 (574)
T ss_pred             EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence            9999987 467777776643  33 47786 799999977644

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.84  E-value=3.4e-08  Score=104.13  Aligned_cols=54  Identities=19%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||.+.||++|++||+|+|++...   |..+.- .....|...|++|+++++.
T Consensus       347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~  401 (543)
T PRK06263        347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAK  401 (543)
T ss_pred             ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHH
Confidence            56899999999999999999999975432   211110 2344566777887777754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.83  E-value=1.7e-07  Score=93.65  Aligned_cols=60  Identities=20%  Similarity=0.382  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCCCCCh
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNT  264 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~~p~~  264 (479)
                      -++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|.....
T Consensus       153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad~  213 (429)
T COG0579         153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYADP  213 (429)
T ss_pred             HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHHH
Confidence            345667777888889999999999999986665 55677888876 9999999999976543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.82  E-value=2.8e-08  Score=101.66  Aligned_cols=126  Identities=29%  Similarity=0.428  Sum_probs=74.3

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---cc-cc--ccCCC-----CCCCC---CC-
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LS-KG--YLLPE-----APARL---PS-   64 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~-~~--~~~~~-----~~~~~---~~-   64 (479)
                      |++ +|||+||||||||++||..|++.|++   |+|+|+.+.......+   +. ..  .+.+.     .....   .. 
T Consensus         1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~   77 (428)
T PRK10157          1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL   77 (428)
T ss_pred             CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence            553 59999999999999999999999997   9999998653221100   00 00  00000     00000   00 


Q ss_pred             -c---------ccccC---Cc-------ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEE
Q 011700           65 -F---------HTCVG---AN-------EERL----TPKWYNEHGIELVLGTRVKSADVRRKTL--VTATGETISYKILI  118 (479)
Q Consensus        65 -~---------~~~~~---~~-------~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lv  118 (479)
                       +         .....   ..       ....    +.+..++.|++++.+++|.++..++..+  ...++.++.+|.||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI  157 (428)
T PRK10157         78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI  157 (428)
T ss_pred             EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence             0         00000   00       0001    1222345799999999999886544433  33466789999999


Q ss_pred             eecCCCccccc
Q 011700          119 IATGARALKLE  129 (479)
Q Consensus       119 iAtG~~~~~~~  129 (479)
                      +|+|.......
T Consensus       158 ~A~G~~s~l~~  168 (428)
T PRK10157        158 LADGVNSILAE  168 (428)
T ss_pred             EEeCCCHHHHH
Confidence            99998765443

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.82  E-value=2.1e-08  Score=105.35  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=39.5

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcCC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ..|+|.||.+.||++|++||+|+|+...  .+|..+.- .....|...|+.|++++...
T Consensus       352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~  408 (536)
T PRK09077        352 TCGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR  408 (536)
T ss_pred             ecCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999997421  12222111 23456777888888887643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.81  E-value=2.4e-08  Score=105.35  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             CCCCEEEECCChHHHHHHHH-------HhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          161 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                      .|+.++++|++++++|++..       +.+++.+|+++...+..+.. +...+...+.+.+++.||++++++.++++.. 
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-  236 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-  236 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence            46788999999999998865       66677777776554443332 5777888888999999999999999999987 


Q ss_pred             CCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhhc
Q 011700          234 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG  269 (479)
Q Consensus       234 ~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~~  269 (479)
                      +++++..+... +++  .+.++ .||+|+| +.+|.++++.
T Consensus       237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence            46777776553 443  47785 5888665 7777766543

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.80  E-value=3.3e-08  Score=103.27  Aligned_cols=55  Identities=31%  Similarity=0.316  Sum_probs=37.9

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||.+.||++|++||+|+|+..-  .+|..+.- .....+...|+.|++++..
T Consensus       340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~  395 (513)
T PRK07512        340 HMGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAG  395 (513)
T ss_pred             EcCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999997321  12221111 2344566678888887754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.79  E-value=1.9e-07  Score=94.58  Aligned_cols=58  Identities=16%  Similarity=0.269  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+.+.+.+.+++.|++++.++++.+++.. ++.+ .+.+.++ ++.+|.||+|+|....
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH
Confidence            4677888888899999999999999999863 3333 5666666 7999999999998754

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.79  E-value=3.3e-08  Score=104.89  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=31.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC---CCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG---VPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g---~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||.++++.|   .+   |+|+||.+.
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~   42 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP   42 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence            589999999999999999999987   55   999999864

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.79  E-value=2.6e-08  Score=104.68  Aligned_cols=35  Identities=29%  Similarity=0.499  Sum_probs=30.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||||||+|.||++||+++++ |.+   |+||||.+.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~---V~lieK~~~   42 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPS-HLR---VGLITKDTL   42 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-CCC---EEEEEccCC
Confidence            35899999999999999999964 765   999999865

>PRK06834 hypothetical protein; Provisional

Probab=98.78  E-value=5e-08  Score=101.33  Aligned_cols=125  Identities=24%  Similarity=0.372  Sum_probs=76.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---cccc---------c----ccCCCCCCCCCCcc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP---ALSK---------G----YLLPEAPARLPSFH   66 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~---~l~~---------~----~~~~~~~~~~~~~~   66 (479)
                      +++||+||||||+|+++|..|++.|.+   |+|||+.+...+..+   .++.         +    +...........+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~   78 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA   78 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence            469999999999999999999999988   999999864321111   1100         0    00000000000000


Q ss_pred             ---cc---------cC-----CcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           67 ---TC---------VG-----ANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        67 ---~~---------~~-----~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                         ..         .+     ......+.+.+++.+++++.+++++++..++.  .+.+.+++++++|+||.|.|.....
T Consensus        79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v  158 (488)
T PRK06834         79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV  158 (488)
T ss_pred             eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence               00         00     00001122334567999999999999876654  3445667789999999999988755


Q ss_pred             ccc
Q 011700          128 LEE  130 (479)
Q Consensus       128 ~~~  130 (479)
                      ...
T Consensus       159 R~~  161 (488)
T PRK06834        159 RKA  161 (488)
T ss_pred             Hhh
Confidence            443

>PLN02815 L-aspartate oxidase

Probab=98.76  E-value=2.4e-07  Score=97.97  Aligned_cols=54  Identities=26%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec-ccHHHHHHHHHHHHHHHc
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~  329 (479)
                      ..|+|.+|.+.||++|++||+|+|+...  ++|..+.- .....+...|+.|++++.
T Consensus       376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa  430 (594)
T PLN02815        376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSI  430 (594)
T ss_pred             eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999997421  12222111 234566667777777765

>PRK10015 oxidoreductase; Provisional

Probab=98.75  E-value=7e-08  Score=98.65  Aligned_cols=124  Identities=19%  Similarity=0.299  Sum_probs=72.9

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccc---cccCCC----C-CC-CCCC--c
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSK---GYLLPE----A-PA-RLPS--F   65 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~---~~~~~~----~-~~-~~~~--~   65 (479)
                      |+. +|||+||||||||++||+.|++.|++   |+|||+.+.......+   ++.   ..+.+.    . .. ....  +
T Consensus         1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~   77 (429)
T PRK10015          1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI   77 (429)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence            553 58999999999999999999999987   9999998753221110   000   000000    0 00 0000  0


Q ss_pred             -----------cccc---------CCc-ccCC----CHhHHHHcCcEEEeCceEEEEECCCcEEE--eCCCcEEEeceEE
Q 011700           66 -----------HTCV---------GAN-EERL----TPKWYNEHGIELVLGTRVKSADVRRKTLV--TATGETISYKILI  118 (479)
Q Consensus        66 -----------~~~~---------~~~-~~~~----~~~~~~~~gv~~~~~~~v~~i~~~~~~v~--~~~g~~~~~d~lv  118 (479)
                                 ....         +-. ....    +.+..++.|++++.+++|..+..++..+.  ..++.++.+|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI  157 (429)
T PRK10015         78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI  157 (429)
T ss_pred             EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence                       0000         000 0011    12223467999999999988876544332  2345679999999


Q ss_pred             eecCCCccc
Q 011700          119 IATGARALK  127 (479)
Q Consensus       119 iAtG~~~~~  127 (479)
                      +|+|.....
T Consensus       158 ~AdG~~s~v  166 (429)
T PRK10015        158 LADGVNSML  166 (429)
T ss_pred             EccCcchhh
Confidence            999976543

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=8.1e-08  Score=101.94  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=32.9

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |++.||||||+|.||++||+++++.|.+   |+|||+.+.
T Consensus         1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lieK~~~   37 (589)
T PRK08641          1 MAKGKVIVVGGGLAGLMATIKAAEAGVH---VDLFSLVPV   37 (589)
T ss_pred             CCCccEEEECchHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence            3468999999999999999999998887   899998764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.74  E-value=4.4e-08  Score=94.90  Aligned_cols=120  Identities=25%  Similarity=0.393  Sum_probs=70.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--ccccc---cc----------------C-CCC-CCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--ALSKG---YL----------------L-PEA-PAR   61 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l~~~---~~----------------~-~~~-~~~   61 (479)
                      |||+|||||++|+++|..|++.|.+   |+|+|+.+.......  .+...   .+                . ... ...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE   77 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence            6999999999999999999999887   999999865321000  00000   00                0 000 000


Q ss_pred             CCC---ccc-ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCC-CcEEEeceEEeecCCCccc
Q 011700           62 LPS---FHT-CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTAT-GETISYKILIIATGARALK  127 (479)
Q Consensus        62 ~~~---~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~-g~~~~~d~lviAtG~~~~~  127 (479)
                      .+.   ... .........+.+.+.+.|++++.++++..+..+...  +.+.+ +.++++|++|+|+|.....
T Consensus        78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~  150 (295)
T TIGR02032        78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV  150 (295)
T ss_pred             eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence            000   000 000000111223345678999999999887655443  33333 4679999999999986543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.73  E-value=1.5e-07  Score=91.50  Aligned_cols=99  Identities=14%  Similarity=0.245  Sum_probs=79.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      +++|||+|+.|+++|..|.+.|.+|+++++.+.   +        ++.    ..+.++.+.+.+.+++.|+++++ .++.
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~   80 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI   80 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence            589999999999999999999999999997641   1        121    12367888888889999999998 7889


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +++.. +. ...+.+.+++++.+|.+++|+|.+|+..
T Consensus        81 ~v~~~-~~-~~~v~~~~~~~~~~d~liiAtG~~~~~~  115 (300)
T TIGR01292        81 KVDLS-DR-PFKVKTGDGKEYTAKAVIIATGASARKL  115 (300)
T ss_pred             EEEec-CC-eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence            98873 22 2356677788999999999999988754

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06184 hypothetical protein; Provisional

Probab=98.73  E-value=6.3e-08  Score=101.32  Aligned_cols=124  Identities=23%  Similarity=0.292  Sum_probs=73.6

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC-ccc---------ccc----------------c
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERP-ALS---------KGY----------------L   54 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~-~l~---------~~~----------------~   54 (479)
                      |+++||+||||||+|+++|..|+++|++   |+|||+.+... ..+. .+.         -++                .
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~   77 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIY   77 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEE
Confidence            3469999999999999999999999998   99999986421 0000 000         000                0


Q ss_pred             CCCCC-CC--C-------C--Cccc--ccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEe---CCCcEEEe
Q 011700           55 LPEAP-AR--L-------P--SFHT--CVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVT---ATGETISY  114 (479)
Q Consensus        55 ~~~~~-~~--~-------~--~~~~--~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~---~~g~~~~~  114 (479)
                      ..... ..  +       +  .+..  ... ......+.+.+.+.++++..++++++++.+...  +.+   .+++++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a  157 (502)
T PRK06184         78 RDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRA  157 (502)
T ss_pred             eCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEe
Confidence            00000 00  0       0  0000  000 000011223345668999999999998765443  333   45578999


Q ss_pred             ceEEeecCCCcccc
Q 011700          115 KILIIATGARALKL  128 (479)
Q Consensus       115 d~lviAtG~~~~~~  128 (479)
                      |+||.|+|.+...-
T Consensus       158 ~~vVgADG~~S~vR  171 (502)
T PRK06184        158 RYLVGADGGRSFVR  171 (502)
T ss_pred             CEEEECCCCchHHH
Confidence            99999999886443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.72  E-value=4.5e-08  Score=99.16  Aligned_cols=124  Identities=22%  Similarity=0.272  Sum_probs=75.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccc----cccCCCCC---CCCCC--cccc---
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSK----GYLLPEAP---ARLPS--FHTC---   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~----~~~~~~~~---~~~~~--~~~~---   68 (479)
                      +|||+||||||||++||+.|++.|++   |+|+|+.....+...+   ++.    .+......   ..+..  +...   
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~   79 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK   79 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence            49999999999999999999999976   9999998764443222   110    00000000   00000  0000   


Q ss_pred             --cCC----c---ccCCCHhHH----HHcCcEEEeCceEEEEECCCcEE--Ee-CCCcEEEeceEEeecCCCcccccc
Q 011700           69 --VGA----N---EERLTPKWY----NEHGIELVLGTRVKSADVRRKTL--VT-ATGETISYKILIIATGARALKLEE  130 (479)
Q Consensus        69 --~~~----~---~~~~~~~~~----~~~gv~~~~~~~v~~i~~~~~~v--~~-~~g~~~~~d~lviAtG~~~~~~~~  130 (479)
                        ...    .   ....+.+|+    .+.|++++.++.+..+..++..+  .+ .++.+++++.+|.|+|........
T Consensus        80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~  157 (396)
T COG0644          80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARK  157 (396)
T ss_pred             eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHH
Confidence              000    0   011223333    46799999999998887655332  22 333689999999999987654433

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.72  E-value=8.6e-08  Score=95.38  Aligned_cols=60  Identities=27%  Similarity=0.423  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+|+ +.+|.||+|+|.....
T Consensus       146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred             ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEeccccccee
Confidence            567888888889999999999999999998 46667679999997 9999999999975443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.71  E-value=4e-08  Score=101.03  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=74.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..+++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~~~~~l~~  210 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL-------------------PREE----PSVAALAKQYMEE  210 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC-------------------CCCC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999885310                   0000    0011234566788


Q ss_pred             cCcEEEeCceEEEEECCCcEEE-eCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLV-TATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~-~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.+.+++.++..+. ..+++++.+|.+|+|+|.+|...
T Consensus       211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~  256 (438)
T PRK07251        211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE  256 (438)
T ss_pred             cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence            9999999999999987654443 34567899999999999998753

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.71  E-value=5.8e-08  Score=91.95  Aligned_cols=117  Identities=18%  Similarity=0.163  Sum_probs=68.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCC-----------CCCC------Ccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAP-----------ARLP------SFH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-----------~~~~------~~~   66 (479)
                      ++||+||||||||++||++|++.|++   |+|+|+.+.....  ....+.+.+...           ..++      ++.
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~   99 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY   99 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence            58999999999999999999999987   9999998643210  000111111000           0000      000


Q ss_pred             cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc-EEE---eC-----------CCcEEEeceEEeecCCCc
Q 011700           67 TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK-TLV---TA-----------TGETISYKILIIATGARA  125 (479)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~-~v~---~~-----------~g~~~~~d~lviAtG~~~  125 (479)
                      ..........+.+...+.|++++.++.|..+..++. .+.   ..           +..++.++.+|+|||...
T Consensus       100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a  173 (257)
T PRK04176        100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA  173 (257)
T ss_pred             eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence            000000011122334567999999998888764332 221   11           224789999999999764

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.70  E-value=1.6e-07  Score=99.37  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=29.3

Q ss_pred             eEEEECCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFT----KRGVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~----~~g~~~~~V~lie~~~~   41 (479)
                      ||||||+|.||++||++++    +.|.+   |+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence            7999999999999999998    55766   999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07190 hypothetical protein; Provisional

Probab=98.69  E-value=9.5e-08  Score=99.14  Aligned_cols=126  Identities=21%  Similarity=0.230  Sum_probs=76.0

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCCc-cc---------cccc---CC---------
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERPA-LS---------KGYL---LP---------   56 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~~-l~---------~~~~---~~---------   56 (479)
                      |+. .+||+||||||+|+++|..|+++|.+   |+|||+.+... ..+.. +.         .+++   ..         
T Consensus         1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~   77 (487)
T PRK07190          1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS   77 (487)
T ss_pred             CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence            543 48999999999999999999999987   99999987421 11100 00         0000   00         


Q ss_pred             ----CCC-C-------CCCC----cccccCC-cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700           57 ----EAP-A-------RLPS----FHTCVGA-NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL  117 (479)
Q Consensus        57 ----~~~-~-------~~~~----~~~~~~~-~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l  117 (479)
                          ... .       ..+.    +...... .....+.+.+++.|+++..+++|+++..+..  .+.+.+++++++++|
T Consensus        78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v  157 (487)
T PRK07190         78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV  157 (487)
T ss_pred             EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence                000 0       0000    0000000 0001122334567999999999999876544  345567778999999


Q ss_pred             EeecCCCccccc
Q 011700          118 IIATGARALKLE  129 (479)
Q Consensus       118 viAtG~~~~~~~  129 (479)
                      |.|+|.+...-.
T Consensus       158 VgADG~~S~vR~  169 (487)
T PRK07190        158 IGADGSRSFVRN  169 (487)
T ss_pred             EECCCCCHHHHH
Confidence            999998864433

>PRK09126 hypothetical protein; Provisional

Probab=98.66  E-value=1.6e-07  Score=95.11  Aligned_cols=126  Identities=25%  Similarity=0.327  Sum_probs=74.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-------cc---------cccc---CCCCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-------LS---------KGYL---LPEAPAR   61 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-------l~---------~~~~---~~~~~~~   61 (479)
                      || ++||+||||||+|+++|..|+++|++   |+|+|+.+......+.       ++         -++.   .......
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~   76 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISP   76 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCc
Confidence            66 59999999999999999999999998   9999998642110000       00         0000   0000000


Q ss_pred             CCCc-----------cccc---CCc-cc-----CCCHh-----HHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEe
Q 011700           62 LPSF-----------HTCV---GAN-EE-----RLTPK-----WYNEHGIELVLGTRVKSADVRRK--TLVTATGETISY  114 (479)
Q Consensus        62 ~~~~-----------~~~~---~~~-~~-----~~~~~-----~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~  114 (479)
                      ....           ....   ... ..     ..+.+     ..+..|++++.++++.+++.+..  .+.+.+|+++.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a  156 (392)
T PRK09126         77 LRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTA  156 (392)
T ss_pred             cceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEe
Confidence            0000           0000   000 00     00111     11235899999999998875544  455677889999


Q ss_pred             ceEEeecCCCcccccc
Q 011700          115 KILIIATGARALKLEE  130 (479)
Q Consensus       115 d~lviAtG~~~~~~~~  130 (479)
                      |.||.|.|........
T Consensus       157 ~~vI~AdG~~S~vr~~  172 (392)
T PRK09126        157 RLLVAADSRFSATRRQ  172 (392)
T ss_pred             CEEEEeCCCCchhhHh
Confidence            9999999987654443

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.66  E-value=9.4e-08  Score=96.86  Aligned_cols=124  Identities=19%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--Cc-----cc---------ccccCC---CCCCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER--PA-----LS---------KGYLLP---EAPARLP   63 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~--~~-----l~---------~~~~~~---~~~~~~~   63 (479)
                      ..+||+||||||+|+++|..|+++|++   |+|||+.+...+..  +.     +.         -+++..   .....+.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~---v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~   81 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLS---VALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYR   81 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCE---EEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCccc
Confidence            468999999999999999999999987   99999986432210  00     10         000000   0000000


Q ss_pred             Ccc-----------cc---cCCc----------ccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700           64 SFH-----------TC---VGAN----------EERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL  117 (479)
Q Consensus        64 ~~~-----------~~---~~~~----------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l  117 (479)
                      .+.           ..   .+..          ....+.+.+++.|+++..+++|+++..+..  ++++.+++++.+|.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~v  161 (392)
T PRK08773         82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALA  161 (392)
T ss_pred             EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEE
Confidence            000           00   0000          000112224457999999999998876544  455567788999999


Q ss_pred             EeecCCCccccc
Q 011700          118 IIATGARALKLE  129 (479)
Q Consensus       118 viAtG~~~~~~~  129 (479)
                      |.|+|.......
T Consensus       162 V~AdG~~S~vr~  173 (392)
T PRK08773        162 IAADGAASTLRE  173 (392)
T ss_pred             EEecCCCchHHH
Confidence            999998765433

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.65  E-value=1.9e-07  Score=97.43  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=33.5

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..++||||||||.|||.||.++++.|.+   |+|+||.+.
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~   40 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP   40 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence            3568999999999999999999999977   899999875

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=98.64  E-value=1.3e-08  Score=83.32  Aligned_cols=83  Identities=20%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             EeecCcceEeecCCCceEEE-----------Ecc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHH
Q 011700          345 SRVFTLSWQFYGDNVGEVVH-----------YGN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKAT  403 (479)
Q Consensus       345 ~~~~~~~~~~~G~~~~~~~~-----------~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i  403 (479)
                      ..+++++++.+|+++.++..           +.+       .+...|.++.+  ++++|+|+|++|++++|+ +.++.+|
T Consensus         4 ~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai   83 (110)
T PF02852_consen    4 VVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAI   83 (110)
T ss_dssp             EEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHH
T ss_pred             EEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHH
Confidence            56788999999998764311           111       11244556544  589999999999999998 6689999


Q ss_pred             HcCCCcCcHHHHhhcCCCcccccC
Q 011700          404 RLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       404 ~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                      +.++|++++.+....||++++.+.
T Consensus        84 ~~~~t~~~l~~~~~~~Pt~se~~~  107 (110)
T PF02852_consen   84 QNGLTVEDLADDIFYHPTFSEAIQ  107 (110)
T ss_dssp             HTTSBHHHHHTSBSSSTSTGHHHH
T ss_pred             HcCCCHHHHhCCeeeCCChhHHHH
Confidence            999999999998888888876543

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.61  E-value=1.8e-07  Score=97.33  Aligned_cols=121  Identities=21%  Similarity=0.342  Sum_probs=70.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCC--C----------CCC--
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLP--E----------APA--   60 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~--~----------~~~--   60 (479)
                      |+.+|||||||||+||+.||..+++.|.+   |+|+|+........+|   .   .++.+..  +          ...  
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~gi   77 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGI   77 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccC
Confidence            56779999999999999999999999998   8999987422211111   1   0100000  0          000  


Q ss_pred             CCCCcccccCC-------c-ccCC----CHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCC
Q 011700           61 RLPSFHTCVGA-------N-EERL----TPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGAR  124 (479)
Q Consensus        61 ~~~~~~~~~~~-------~-~~~~----~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~  124 (479)
                      ...-.....+.       . ....    +.+.+.+ .+++++.+ .|..+..++..   |.+.+|..+.++.+|+|||..
T Consensus        78 q~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF  156 (618)
T PRK05192         78 QFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF  156 (618)
T ss_pred             ceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence            00000000000       0 0001    1122233 37888765 78877655543   556788899999999999975


Q ss_pred             c
Q 011700          125 A  125 (479)
Q Consensus       125 ~  125 (479)
                      .
T Consensus       157 L  157 (618)
T PRK05192        157 L  157 (618)
T ss_pred             h
Confidence            3

>PRK08244 hypothetical protein; Provisional

Probab=98.61  E-value=1.8e-07  Score=97.67  Aligned_cols=121  Identities=21%  Similarity=0.361  Sum_probs=71.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC-cc---------cccc---------------cCC-C
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-YERP-AL---------SKGY---------------LLP-E   57 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-~~~~-~l---------~~~~---------------~~~-~   57 (479)
                      +||+||||||+|+++|..|++.|.+   |+|||+.+... ..+. .+         .-++               +.. .
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~   79 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLD   79 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccc
Confidence            8999999999999999999999998   99999986521 1110 00         0000               000 0


Q ss_pred             CCCCCCCcc------cccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEE--EeC--CC-cEEEeceEEeecCCCc
Q 011700           58 APARLPSFH------TCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTL--VTA--TG-ETISYKILIIATGARA  125 (479)
Q Consensus        58 ~~~~~~~~~------~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v--~~~--~g-~~~~~d~lviAtG~~~  125 (479)
                      ....+....      .... ......+.+.+++.+++++.+++++++..++..+  .+.  ++ +++++|+||.|.|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S  159 (493)
T PRK08244         80 TRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS  159 (493)
T ss_pred             ccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence            000000000      0000 0001112233456799999999999887655433  332  45 4799999999999876


Q ss_pred             ccc
Q 011700          126 LKL  128 (479)
Q Consensus       126 ~~~  128 (479)
                      ..-
T Consensus       160 ~vR  162 (493)
T PRK08244        160 IVR  162 (493)
T ss_pred             HHH
Confidence            443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.60  E-value=2.1e-07  Score=94.65  Aligned_cols=123  Identities=23%  Similarity=0.310  Sum_probs=73.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCCCC-CCCCc---cc---------cccc---CCC---------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPVAP-YERPA---LS---------KGYL---LPE---------   57 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~~~-~~~~~---l~---------~~~~---~~~---------   57 (479)
                      +||+||||||+|+++|..|+++|  ++   |+|+|+.+... ...+.   ++         -++.   ...         
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   78 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVI   78 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEE
Confidence            89999999999999999999985  65   99999986421 11000   00         0000   000         


Q ss_pred             ---CC---CCCCCcccc----cCCc---------ccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEece
Q 011700           58 ---AP---ARLPSFHTC----VGAN---------EERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATGETISYKI  116 (479)
Q Consensus        58 ---~~---~~~~~~~~~----~~~~---------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~  116 (479)
                         ..   .....+...    .+..         ....+.+.+.+.|++++.+++|++++.+...  +.+.++.++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  158 (403)
T PRK07333         79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARL  158 (403)
T ss_pred             EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCE
Confidence               00   000000000    0000         0011223344569999999999998765544  4556788899999


Q ss_pred             EEeecCCCcccccc
Q 011700          117 LIIATGARALKLEE  130 (479)
Q Consensus       117 lviAtG~~~~~~~~  130 (479)
                      ||.|+|........
T Consensus       159 vI~AdG~~S~vr~~  172 (403)
T PRK07333        159 LVAADGARSKLREL  172 (403)
T ss_pred             EEEcCCCChHHHHH
Confidence            99999987654443

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.60  E-value=2.8e-07  Score=86.97  Aligned_cols=116  Identities=19%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-----------CCCCCC------cc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-----------PARLPS------FH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~------~~   66 (479)
                      ++||+||||||||++||+.|+++|++   |+|+|+++.....  ....+.+.+..           ...++.      +.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg--~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~   95 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG--SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV   95 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc--ccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence            58999999999999999999999987   9999999753211  00001110000           000110      00


Q ss_pred             cccCCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EE---EeC-----------CCcEEEeceEEeecCCC
Q 011700           67 TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TL---VTA-----------TGETISYKILIIATGAR  124 (479)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v---~~~-----------~g~~~~~d~lviAtG~~  124 (479)
                      ..........+.+...+.|++++.++.+..+..++.  .+   .+.           +..++.++.+|.|||..
T Consensus        96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~  169 (254)
T TIGR00292        96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD  169 (254)
T ss_pred             EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence            000000001122233567999999999988775433  22   221           12478999999999965

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.60  E-value=6.4e-07  Score=95.30  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=28.9

Q ss_pred             EEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            7 YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         7 vvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |||||+|.||++||+++++.|.+   |+|+|+.+
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~---VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYH---VKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCC---EEEEEecC
Confidence            69999999999999999998887   99999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.60  E-value=2.4e-07  Score=98.41  Aligned_cols=101  Identities=13%  Similarity=0.115  Sum_probs=69.2

Q ss_pred             CCCEEEECCChHH-HHHHHHHhhCCCeEEEEeecCccccc-------------cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIG-MECAASLVINKINVTMVFPEAHCMAR-------------LFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g-~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      +.++.++|+++++ .+++..+...+..+.+..+..+++..             .....+.+.+.+.+++.|++++.++.+
T Consensus       161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v  240 (581)
T PRK06134        161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA  240 (581)
T ss_pred             cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence            4567778888776 67777777666655544332221111             123456778888889999999999999


Q ss_pred             EEEEEcCCCcEEEEEeC--CCc-EEec-cEEEEecCCCCC
Q 011700          228 SSFDVDSNGKVVAVNLR--DGN-RLPT-DMVVVGIGIRPN  263 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~--~g~-~i~~-D~Vi~a~G~~p~  263 (479)
                      +++.. +++++..|...  ++. ++.+ +.||+|+|--.+
T Consensus       241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  279 (581)
T PRK06134        241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH  279 (581)
T ss_pred             EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence            99886 36777666553  333 5788 999999986554

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.60  E-value=3.7e-07  Score=94.60  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=73.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ........+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~~~~~l~~  223 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL-------------------PGED----AEVSKVVAKALKK  223 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC-------------------CCCC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310                   0000    0011234566778


Q ss_pred             cCcEEEeCceEEEEECCCcEE--EeCCC--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTL--VTATG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v--~~~~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.+.+++.++..+  ...++  +++++|.||+|+|..|...
T Consensus       224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            899999999999887665444  33455  4799999999999998654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.57  E-value=2.3e-07  Score=94.49  Aligned_cols=125  Identities=20%  Similarity=0.255  Sum_probs=73.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCC-C----CC-Ccccc---------cccCC---CCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP-VAP-Y----ER-PALSK---------GYLLP---EAPAR   61 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~-~~~-~----~~-~~l~~---------~~~~~---~~~~~   61 (479)
                      ||..+||+||||||+|+++|..|++.|++   |+|+|+.+ ... .    .+ ..++.         ++...   .....
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~   77 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAP   77 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCc
Confidence            77789999999999999999999999987   99999862 110 0    01 00100         00000   00000


Q ss_pred             CCCccc-----------cc--------CCcc-cCCCHhH----HHH-cCcEEEeCceEEEEECCC--cEEEeCCCcEEEe
Q 011700           62 LPSFHT-----------CV--------GANE-ERLTPKW----YNE-HGIELVLGTRVKSADVRR--KTLVTATGETISY  114 (479)
Q Consensus        62 ~~~~~~-----------~~--------~~~~-~~~~~~~----~~~-~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~  114 (479)
                      ...+..           ..        +... ...+...    +.+ .++++..++++.+++.++  ..+.+.+|+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a  157 (405)
T PRK08850         78 YIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTA  157 (405)
T ss_pred             ccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEe
Confidence            000000           00        0000 0001111    122 379999999999886544  3566678889999


Q ss_pred             ceEEeecCCCcccc
Q 011700          115 KILIIATGARALKL  128 (479)
Q Consensus       115 d~lviAtG~~~~~~  128 (479)
                      |.||.|.|.....-
T Consensus       158 ~lvIgADG~~S~vR  171 (405)
T PRK08850        158 KLVVGADGANSWLR  171 (405)
T ss_pred             CEEEEeCCCCChhH
Confidence            99999999875443

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.56  E-value=1.3e-06  Score=86.00  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=67.8

Q ss_pred             HHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          180 SLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       180 ~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      .+...+...-++.-..+.+....-+++.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|
T Consensus       149 e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~G  227 (486)
T COG2509         149 EFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPG  227 (486)
T ss_pred             HHHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccC
Confidence            34444555555543333344335678899999999999999999999999998 56667789999999999999999999


Q ss_pred             CCCChhhh
Q 011700          260 IRPNTSLF  267 (479)
Q Consensus       260 ~~p~~~l~  267 (479)
                      +....++.
T Consensus       228 rsg~dw~~  235 (486)
T COG2509         228 RSGRDWFE  235 (486)
T ss_pred             cchHHHHH
Confidence            99887643

>PRK08013 oxidoreductase; Provisional

Probab=98.55  E-value=2.2e-07  Score=94.36  Aligned_cols=123  Identities=15%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-ccc---------ccccCC---CCCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE-------RP-ALS---------KGYLLP---EAPARL   62 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-------~~-~l~---------~~~~~~---~~~~~~   62 (479)
                      +++||+||||||+|+++|..|++.|++   |+|+|+.+...-.       +. .+.         -+++..   ......
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~   78 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY   78 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence            458999999999999999999999987   9999998642110       00 000         011000   000000


Q ss_pred             CCcc-----------cc---cCCcc------cCCCHhH----HHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEec
Q 011700           63 PSFH-----------TC---VGANE------ERLTPKW----YNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYK  115 (479)
Q Consensus        63 ~~~~-----------~~---~~~~~------~~~~~~~----~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d  115 (479)
                      ..+.           ..   .+...      ...+.+.    +.+ .+++++.++++.+++.+..  ++.+.+|+++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~  158 (400)
T PRK08013         79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR  158 (400)
T ss_pred             cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence            0000           00   00000      0001111    223 3799999999998865543  4556788899999


Q ss_pred             eEEeecCCCcccc
Q 011700          116 ILIIATGARALKL  128 (479)
Q Consensus       116 ~lviAtG~~~~~~  128 (479)
                      .||-|.|.....-
T Consensus       159 lvVgADG~~S~vR  171 (400)
T PRK08013        159 LVVGADGANSWLR  171 (400)
T ss_pred             EEEEeCCCCcHHH
Confidence            9999999875443

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.54  E-value=2.8e-07  Score=93.09  Aligned_cols=124  Identities=23%  Similarity=0.355  Sum_probs=73.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C------ccc---------ccccCC---CCCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER--P------ALS---------KGYLLP---EAPARL   62 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~--~------~l~---------~~~~~~---~~~~~~   62 (479)
                      +.+||+||||||+|+++|..|++.|++   |+|+|+.+...+..  +      .++         -+++..   .....+
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~   78 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPY   78 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence            358999999999999999999999987   99999875222111  0      110         000000   000000


Q ss_pred             CC------------ccc-ccC-Cc----cc-CCCHhH----HHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700           63 PS------------FHT-CVG-AN----EE-RLTPKW----YNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYKI  116 (479)
Q Consensus        63 ~~------------~~~-~~~-~~----~~-~~~~~~----~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~  116 (479)
                      ..            +.. ... ..    .. ..+...    +.. .+++++.++++.+++.+..  ++++.+|.++++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l  158 (384)
T PRK08849         79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW  158 (384)
T ss_pred             ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence            00            000 000 00    00 001111    122 3799999999998875443  56778888999999


Q ss_pred             EEeecCCCccccc
Q 011700          117 LIIATGARALKLE  129 (479)
Q Consensus       117 lviAtG~~~~~~~  129 (479)
                      ||.|+|.....-.
T Consensus       159 vIgADG~~S~vR~  171 (384)
T PRK08849        159 VIGADGANSQVRQ  171 (384)
T ss_pred             EEEecCCCchhHH
Confidence            9999998765433

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.53  E-value=3.8e-07  Score=92.26  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.4

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |+.+||+||||||+|+++|..|++.|.+   |+|||+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence            4568999999999999999999999887   999999864

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.52  E-value=5.3e-06  Score=78.62  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=107.4

Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------  200 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------  200 (479)
                      +.+...-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+-..                                    
T Consensus        20 ~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~   99 (257)
T PRK04176         20 LLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY   99 (257)
T ss_pred             HHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence            33334568999999999999999999999999999987543110                                    


Q ss_pred             -cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCChh-hh
Q 011700          201 -LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF  267 (479)
Q Consensus       201 -~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~~-l~  267 (479)
                       ....++...+.+..++.|++++.++.+.++..++++++..+...           +..++.++.||.|+|...... .+
T Consensus       100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence             00134455566677788999999999999876444466555442           224799999999999765432 11


Q ss_pred             -hc----cccc-ccCc--------EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          268 -EG----QLTL-EKGG--------IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       268 -~~----~~~~-~~g~--------i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                       +.    .... ....        ..|+..-+ -+|++|++|=.+....   |.++-=+...-=...|+.||+.|+..
T Consensus       180 ~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~~  253 (257)
T PRK04176        180 ARKGPELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILEK  253 (257)
T ss_pred             HHHcCCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHHH
Confidence             11    0111 0111        22222222 3799999998776432   22222133332245677787777643

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.51  E-value=4e-06  Score=87.01  Aligned_cols=64  Identities=16%  Similarity=0.322  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecC-CCCChhhhh
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G-~~p~~~l~~  268 (479)
                      ..+.+.+.+.+++.|++++.+++++++.. +++++..+...  ++  ..+.++.||+|+| +..+.++++
T Consensus       131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~  199 (466)
T PRK08274        131 KALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR  199 (466)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence            56677788888899999999999999987 46777777653  33  3688999999998 455655554

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.50  E-value=3.8e-07  Score=92.53  Aligned_cols=124  Identities=18%  Similarity=0.187  Sum_probs=73.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--ccc---------ccccCC--CCCCCCCCccc
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--ALS---------KGYLLP--EAPARLPSFHT   67 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l~---------~~~~~~--~~~~~~~~~~~   67 (479)
                      |+.+.||+|||||++|+++|..|++.|++   |+|+|+.+...-...  .+.         -++...  ........+..
T Consensus         1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~---v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~   77 (396)
T PRK08163          1 MTKVTPVLIVGGGIGGLAAALALARQGIK---VKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTM   77 (396)
T ss_pred             CCCCCeEEEECCcHHHHHHHHHHHhCCCc---EEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEE
Confidence            77789999999999999999999999987   999999864211000  000         000000  00000000000


Q ss_pred             --------------------ccCCccc--------CCCHhHHHHc-CcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700           68 --------------------CVGANEE--------RLTPKWYNEH-GIELVLGTRVKSADVRRK--TLVTATGETISYKI  116 (479)
Q Consensus        68 --------------------~~~~~~~--------~~~~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~  116 (479)
                                          ..+....        ..+.+.+.+. +++++.++++.+++.++.  .+.+.+|+++.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~  157 (396)
T PRK08163         78 MDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDA  157 (396)
T ss_pred             EeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCE
Confidence                                0000000        0011112233 489999999999876544  34556778899999


Q ss_pred             EEeecCCCccc
Q 011700          117 LIIATGARALK  127 (479)
Q Consensus       117 lviAtG~~~~~  127 (479)
                      ||.|.|.....
T Consensus       158 vV~AdG~~S~~  168 (396)
T PRK08163        158 LIGCDGVKSVV  168 (396)
T ss_pred             EEECCCcChHH
Confidence            99999987543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.50  E-value=3.7e-06  Score=85.72  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ..++.+.+.+.++..|.++++++.|.+|+.++++++..|.+.+|+++.|+.||......|.
T Consensus       231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence            4578888888889999999999999999875567788899999999999999998877765

>PRK07045 putative monooxygenase; Reviewed

Probab=98.50  E-value=4.1e-07  Score=92.01  Aligned_cols=123  Identities=18%  Similarity=0.225  Sum_probs=72.7

Q ss_pred             CC-CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCc-cc---------ccccC---CCCCCCCCC-
Q 011700            1 MG-RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE-RPA-LS---------KGYLL---PEAPARLPS-   64 (479)
Q Consensus         1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~-~~~-l~---------~~~~~---~~~~~~~~~-   64 (479)
                      |+ +++||+||||||+|+++|..|++.|++   |+|+|+.+..... +.. +.         -+++.   ......... 
T Consensus         1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~   77 (388)
T PRK07045          1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM   77 (388)
T ss_pred             CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence            44 578999999999999999999999987   9999988753110 000 00         00000   000000000 


Q ss_pred             -----------cccc----cCCcc---cCCCHhHH----H-HcCcEEEeCceEEEEECCC-c---EEEeCCCcEEEeceE
Q 011700           65 -----------FHTC----VGANE---ERLTPKWY----N-EHGIELVLGTRVKSADVRR-K---TLVTATGETISYKIL  117 (479)
Q Consensus        65 -----------~~~~----~~~~~---~~~~~~~~----~-~~gv~~~~~~~v~~i~~~~-~---~v~~~~g~~~~~d~l  117 (479)
                                 +...    .+...   ...+.+.+    . ..+++++.+++++.+..+. .   .++..+|+++.+|.|
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v  157 (388)
T PRK07045         78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL  157 (388)
T ss_pred             EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence                       0000    00000   00011111    1 2479999999999887542 2   466678889999999


Q ss_pred             EeecCCCcc
Q 011700          118 IIATGARAL  126 (479)
Q Consensus       118 viAtG~~~~  126 (479)
                      |.|.|....
T Consensus       158 IgADG~~S~  166 (388)
T PRK07045        158 VGADGARSM  166 (388)
T ss_pred             EECCCCChH
Confidence            999998753

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.49  E-value=1.1e-06  Score=90.69  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHhhCCCeEEEEeecCcc--ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CC--CcEEEEEeC-C
Q 011700          172 YIGMECAASLVINKINVTMVFPEAHC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-D  245 (479)
Q Consensus       172 ~~g~E~A~~l~~~g~~Vtlv~~~~~~--l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~--g~v~~v~~~-~  245 (479)
                      .++.|+...|.++=.++.-+.....+  ....-.+.+...+.++++++||+|+++++|+++..+ ++  ++++.+... +
T Consensus       192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~  271 (576)
T PRK13977        192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN  271 (576)
T ss_pred             hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence            57888888887652221111111110  111123677888999999999999999999999874 23  567777774 3


Q ss_pred             Cc-----EEeccEEEEecCCC
Q 011700          246 GN-----RLPTDMVVVGIGIR  261 (479)
Q Consensus       246 g~-----~i~~D~Vi~a~G~~  261 (479)
                      |+     ..+.|.||+++|.-
T Consensus       272 ~~~~~I~l~~~DlVivTnGs~  292 (576)
T PRK13977        272 GKEETIDLTEDDLVFVTNGSI  292 (576)
T ss_pred             CceeEEEecCCCEEEEeCCcC
Confidence            32     35689999999954

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.49  E-value=5.1e-06  Score=84.89  Aligned_cols=57  Identities=23%  Similarity=0.335  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+.+.+++.|++++.+++|++++.+ ++.+..+.+.++ ++.+|.||+|+|...
T Consensus       201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~  257 (416)
T PRK00711        201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence            456677778888999999999999999873 445545666554 799999999999754

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.48  E-value=7.5e-07  Score=90.23  Aligned_cols=122  Identities=23%  Similarity=0.320  Sum_probs=71.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------ccc---------ccccCCC-----CC-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--------ALS---------KGYLLPE-----AP-   59 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--------~l~---------~~~~~~~-----~~-   59 (479)
                      +.+||+||||||+|+++|..|++.|++   |+|+|+.+...+...        .++         -+++..-     .. 
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~   80 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY   80 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence            358999999999999999999999987   999999763222100        000         0000000     00 


Q ss_pred             CC-----CCC--cccc---cC-Cc----c-cCCC----HhHHHHc-CcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700           60 AR-----LPS--FHTC---VG-AN----E-ERLT----PKWYNEH-GIELVLGTRVKSADVRRK--TLVTATGETISYKI  116 (479)
Q Consensus        60 ~~-----~~~--~~~~---~~-~~----~-~~~~----~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~  116 (479)
                      ..     ...  ....   .. ..    . ...+    .+.+.+. +++++.++++..+..+..  .+.+.+++++++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~  160 (391)
T PRK08020         81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKL  160 (391)
T ss_pred             ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCE
Confidence            00     000  0000   00 00    0 0001    1112334 899999999998865543  45566778899999


Q ss_pred             EEeecCCCccc
Q 011700          117 LIIATGARALK  127 (479)
Q Consensus       117 lviAtG~~~~~  127 (479)
                      ||.|.|.....
T Consensus       161 vI~AdG~~S~v  171 (391)
T PRK08020        161 VIGADGANSQV  171 (391)
T ss_pred             EEEeCCCCchh
Confidence            99999987644

>PRK06185 hypothetical protein; Provisional

Probab=98.47  E-value=5.6e-07  Score=91.64  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||+|||||++|+++|..|++.|++   |+|+|+.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence            468999999999999999999999987   999999753

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.47  E-value=5.9e-07  Score=91.75  Aligned_cols=36  Identities=25%  Similarity=0.499  Sum_probs=33.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||+||||||||+++|..|++.|++   |+|+|+.+.
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~   52 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA   52 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence            468999999999999999999999987   999999875

>PLN02697 lycopene epsilon cyclase

Probab=98.46  E-value=5.7e-07  Score=93.47  Aligned_cols=116  Identities=17%  Similarity=0.260  Sum_probs=67.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccccc----CCC-CCCCCCCccccc--------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYL----LPE-APARLPSFHTCV--------   69 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~----~~~-~~~~~~~~~~~~--------   69 (479)
                      .+||+||||||||+++|..|++.|++   |++||+..  ++..+. +....+    ..+ ....++......        
T Consensus       108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~  182 (529)
T PLN02697        108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI  182 (529)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence            48999999999999999999999987   89999863  222111 100000    000 000011000000        


Q ss_pred             CCc----cc----CCCHhHHHHcCcEEEeCceEEEEECCCc--E-EEeCCCcEEEeceEEeecCCCc
Q 011700           70 GAN----EE----RLTPKWYNEHGIELVLGTRVKSADVRRK--T-LVTATGETISYKILIIATGARA  125 (479)
Q Consensus        70 ~~~----~~----~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~-v~~~~g~~~~~d~lviAtG~~~  125 (479)
                      +..    ..    ..+.+.+.+.|+++. +++|..+..+..  . +...++.++.++.||.|+|...
T Consensus       183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            000    00    111122345689984 558888875433  2 3456778899999999999876

>PRK07236 hypothetical protein; Provisional

Probab=98.46  E-value=1.1e-06  Score=88.97  Aligned_cols=121  Identities=19%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-c--ccc---------cccCCCCCCCCC--Cc--c
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-A--LSK---------GYLLPEAPARLP--SF--H   66 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~--l~~---------~~~~~~~~~~~~--~~--~   66 (479)
                      ..++|+|||||++|+++|..|++.|++   |+|+|+.+...-.+. .  +..         ++. .......+  ..  .
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~-~~~~~~~~~~~~~~~   80 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVA-LPADIGVPSRERIYL   80 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCC-cccccccCccceEEE
Confidence            358999999999999999999999987   999999864211110 0  000         000 00000000  00  0


Q ss_pred             cccCCcc--------c---CCCHhHHH-H-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           67 TCVGANE--------E---RLTPKWYN-E-HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        67 ~~~~~~~--------~---~~~~~~~~-~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      ...+...        .   ..+.+.+. . .+++++.+++|+++..+..  ++.+.+|+++.+|.||.|-|.....
T Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence            0000000        0   00111121 1 2467888999999976554  3566788899999999999977543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.46  E-value=6.8e-07  Score=90.98  Aligned_cols=122  Identities=19%  Similarity=0.291  Sum_probs=72.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CC-----CCCc---cc---------ccccCC---CCCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PY-----ERPA---LS---------KGYLLP---EAPARL   62 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~-----~~~~---l~---------~~~~~~---~~~~~~   62 (479)
                      +||+||||||+|+++|..|++.|++   |+|+|+.+..  ++     ..+.   ++         -+++..   ......
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~   79 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPY   79 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccc
Confidence            8999999999999999999999987   9999998621  00     0000   00         000000   000000


Q ss_pred             CCcc-----------ccc---CCcc----------cCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEece
Q 011700           63 PSFH-----------TCV---GANE----------ERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKI  116 (479)
Q Consensus        63 ~~~~-----------~~~---~~~~----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~  116 (479)
                      ..+.           ...   ....          ...+.+.+++.+++++.++++.+++.+..  .+.+.+|+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~  159 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPL  159 (405)
T ss_pred             eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCE
Confidence            0000           000   0000          00111223456899999999998875543  45667888899999


Q ss_pred             EEeecCCCccccc
Q 011700          117 LIIATGARALKLE  129 (479)
Q Consensus       117 lviAtG~~~~~~~  129 (479)
                      ||.|.|.....-.
T Consensus       160 vVgAdG~~S~vR~  172 (405)
T PRK05714        160 VVAADGANSAVRR  172 (405)
T ss_pred             EEEecCCCchhHH
Confidence            9999998754433

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.44  E-value=1.4e-06  Score=87.85  Aligned_cols=98  Identities=19%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------------------------  198 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------------------------------  198 (479)
                      +|+|||+|+.|+-+|..+++.|.+|+++++.+++.                                             
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            58999999999999999999999999999883221                                             


Q ss_pred             ---------------------ccc-CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          199 ---------------------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       199 ---------------------~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                                           |.. -..++.+.+.+.+++.||+++++++|.+++. +++.+..|.++++.++.+|.||+
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEE
Confidence                                 110 0134566777888899999999999999987 45555678887788999999999


Q ss_pred             ecCCCC
Q 011700          257 GIGIRP  262 (479)
Q Consensus       257 a~G~~p  262 (479)
                      |+|-..
T Consensus       161 AtGG~S  166 (409)
T PF03486_consen  161 ATGGKS  166 (409)
T ss_dssp             ----SS
T ss_pred             ecCCCC
Confidence            999654

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.43  E-value=1.8e-05  Score=74.79  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=105.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------ccc---------------------------CC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------ARL---------------------------FT  203 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------~~~---------------------------~~  203 (479)
                      ..-.++|||+|+.|+-+|..|++.|.+|.++++.+.+-          +..                           ..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~   99 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADS   99 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeH
Confidence            45689999999999999999999999999999875431          000                           11


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC-cEEEEEeC-----------CCcEEeccEEEEecCCCCCh-hhhhcc
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT-SLFEGQ  270 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~-~l~~~~  270 (479)
                      .++.+.+.+...+.|++++.++.+.++..++++ ++..+...           +..+++++.||.|+|..... .++...
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~  179 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK  179 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence            244556666777889999999999998864442 56666653           22478999999999976543 333211


Q ss_pred             --ccc--c----cCcEEEcCc-----ccC--CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          271 --LTL--E----KGGIKVTGR-----LQS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       271 --~~~--~----~g~i~Vd~~-----l~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                        +..  .    .+...++.-     -.|  -+|++|++|=.+....   |.++-=+....=...|+.||+.|+.
T Consensus       180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~~  251 (254)
T TIGR00292       180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQILE  251 (254)
T ss_pred             cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHHH
Confidence              111  0    111222210     023  4899999998776322   2222213333234567888877654

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.43  E-value=9.9e-07  Score=93.34  Aligned_cols=35  Identities=23%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+|+++|..|+++|++   |+|||+.+.
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~   57 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT   57 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            47999999999999999999999988   899999874

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.43  E-value=1.1e-06  Score=88.35  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             eEEEECCchHHHHHHHHH--HHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-------CCCCCCcccccCCc----
Q 011700            6 VYVIVGGGVAAGYAALEF--TKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-------PARLPSFHTCVGAN----   72 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l--~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~----   72 (479)
                      |||||||||||+++|.+|  ++.|.+   |+|||+++..++..... ..+.....       ...++.........    
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~t-W~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~   76 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDRT-WCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL   76 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCcc-cccccccccchHHHHheecCceEEEeCCCceEE
Confidence            899999999999999999  555555   99999987653332221 00110000       01111111000000    


Q ss_pred             --------ccCCCHh----HHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcc
Q 011700           73 --------EERLTPK----WYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        73 --------~~~~~~~----~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                              ....+.+    .+...++ .+.++.|.+|+....  .+.+.+|++++++.||-|+|..+.
T Consensus        77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence                    0001111    1222344 455678999987765  567788899999999999995543

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.42  E-value=2.3e-06  Score=74.70  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=29.6

Q ss_pred             EEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700            8 VIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV   41 (479)
Q Consensus         8 vIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~   41 (479)
                      +|||+|++|++++.+|.++.  .+..+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            59999999999999999974  45668999999765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.42  E-value=1.3e-05  Score=80.69  Aligned_cols=57  Identities=19%  Similarity=0.240  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++ ++.+|.||+|+|...
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcch
Confidence            3456677778888899999999999999873 4443 4666665 799999999999653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.42  E-value=8e-07  Score=89.88  Aligned_cols=122  Identities=21%  Similarity=0.280  Sum_probs=71.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-------cc---------ccccCC---CCCCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-------LS---------KGYLLP---EAPARLPS   64 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-------l~---------~~~~~~---~~~~~~~~   64 (479)
                      ++||+||||||||+++|..|++.|.+   |+|+|+.+........       +.         .++...   ........
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~   81 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYD   81 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceE
Confidence            48999999999999999999999887   9999998653210000       00         000000   00000000


Q ss_pred             ----------cccc---cCCc----------ccCCCHhHHHHcC-cEEEeCceEEEEECCCc--EEEeCCCcEEEeceEE
Q 011700           65 ----------FHTC---VGAN----------EERLTPKWYNEHG-IELVLGTRVKSADVRRK--TLVTATGETISYKILI  118 (479)
Q Consensus        65 ----------~~~~---~~~~----------~~~~~~~~~~~~g-v~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lv  118 (479)
                                +...   ....          ....+.+.+++.+ ++++ ++++.++..++.  .+.+.++.++.+|.+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI  160 (388)
T PRK07608         82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVV  160 (388)
T ss_pred             EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEE
Confidence                      0000   0000          0001122334555 8888 778888865443  4556677789999999


Q ss_pred             eecCCCccccc
Q 011700          119 IATGARALKLE  129 (479)
Q Consensus       119 iAtG~~~~~~~  129 (479)
                      .|+|.......
T Consensus       161 ~adG~~S~vr~  171 (388)
T PRK07608        161 GADGAHSWVRS  171 (388)
T ss_pred             EeCCCCchHHH
Confidence            99998754433

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.42  E-value=1.4e-06  Score=91.94  Aligned_cols=35  Identities=26%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+||||||+|+++|..|+++|++   |+|+|+.+.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~   44 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT   44 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence            58999999999999999999999987   999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.40  E-value=6.6e-06  Score=86.35  Aligned_cols=101  Identities=24%  Similarity=0.324  Sum_probs=81.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Ccc-----------ccccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      ..+++|||+|+.|+.+|..+++.|.+|+++.+.  ..+           .+....+++.+.+.+.+++.|++++.++++.
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~  290 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS  290 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            458999999999999999999999999999653  111           0111346788889999999999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      ++...+ + ...+.+.+++++.+|.|++|+|.+|..
T Consensus       291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~  324 (517)
T PRK15317        291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN  324 (517)
T ss_pred             EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            998732 2 345677888899999999999998754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=8.8e-07  Score=89.81  Aligned_cols=44  Identities=23%  Similarity=0.387  Sum_probs=34.8

Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .+++++.+++++++..++.  .+.+.++.++.+|.||.|.|.....
T Consensus       126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v  171 (395)
T PRK05732        126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSAL  171 (395)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhh
Confidence            4799999999998875543  4566777889999999999987543

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.39  E-value=1.4e-06  Score=88.22  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      |||+||||||||+++|+.|++.|++   |+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            7999999999999999999999987   9999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=98.39  E-value=1.9e-06  Score=85.86  Aligned_cols=119  Identities=18%  Similarity=0.274  Sum_probs=67.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCc---ccc---------cccCCCCC-C-----CCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPA---LSK---------GYLLPEAP-A-----RLP   63 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~---l~~---------~~~~~~~~-~-----~~~   63 (479)
                      |||+||||||||+++|..|++. ++   |+++|+.+..   ++..++   ++.         ++..+... .     ...
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~   77 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK   77 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence            8999999999999999999997 66   9999988642   122212   100         00000000 0     000


Q ss_pred             Ccccc------cCCc----ccCCCHhHH---HHcCcEEEeCceEEEEECCCc--EEEe-CCCc--EEEeceEEeecCCCc
Q 011700           64 SFHTC------VGAN----EERLTPKWY---NEHGIELVLGTRVKSADVRRK--TLVT-ATGE--TISYKILIIATGARA  125 (479)
Q Consensus        64 ~~~~~------~~~~----~~~~~~~~~---~~~gv~~~~~~~v~~i~~~~~--~v~~-~~g~--~~~~d~lviAtG~~~  125 (479)
                      .....      .+..    ....+.+++   ...+++++.++.+..+..+..  .+.+ .+++  ++++|.||.|+|...
T Consensus        78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S  157 (351)
T PRK11445         78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS  157 (351)
T ss_pred             EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            00000      0000    000111222   246899999988888865443  3443 4553  689999999999875


Q ss_pred             cc
Q 011700          126 LK  127 (479)
Q Consensus       126 ~~  127 (479)
                      ..
T Consensus       158 ~v  159 (351)
T PRK11445        158 MV  159 (351)
T ss_pred             HH
Confidence            43

>TIGR00275 flavoprotein, HI0933 family

Probab=98.39  E-value=5.1e-06  Score=84.26  Aligned_cols=84  Identities=12%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             HHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccE
Q 011700          175 MECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM  253 (479)
Q Consensus       175 ~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~  253 (479)
                      -++...+.+.|.+++.... .++++. ....++.+.+.+.+++.|++++.++.+.+++.+ ++. ..+.+ +++++.+|.
T Consensus        76 ~d~~~~~~~~Gv~~~~~~~-g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~  151 (400)
T TIGR00275        76 KDLIDFFESLGLELKVEED-GRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADK  151 (400)
T ss_pred             HHHHHHHHHcCCeeEEecC-CEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCE
Confidence            3455667777888776543 334432 134678888899999999999999999999763 332 34555 566899999


Q ss_pred             EEEecCCCC
Q 011700          254 VVVGIGIRP  262 (479)
Q Consensus       254 Vi~a~G~~p  262 (479)
                      ||+|+|...
T Consensus       152 VIlAtG~~s  160 (400)
T TIGR00275       152 VILATGGLS  160 (400)
T ss_pred             EEECCCCcc
Confidence            999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.38  E-value=8.3e-07  Score=87.75  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=62.2

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCCC-----C-------CCCC-----
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLPE-----A-------PARL-----   62 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~~-----~-------~~~~-----   62 (479)
                      ||+|||||.||..||..+++.|.+   |.|+..........+|   +   .++.+..+     .       ...+     
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l   77 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML   77 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence            899999999999999999999998   8888433221111111   1   00000000     0       0000     


Q ss_pred             -----CCcccccCCcccCCCH----hHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCC
Q 011700           63 -----PSFHTCVGANEERLTP----KWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGA  123 (479)
Q Consensus        63 -----~~~~~~~~~~~~~~~~----~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~  123 (479)
                           |.........+...+.    +.+.+ .+++++.+ +|..+..++..   |.+.+|+.+.+|.+|+|||.
T Consensus        78 N~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   78 NRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             STTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             cccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence                 0000000000011122    22333 58999875 89999887665   45688999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.38  E-value=2.2e-06  Score=86.90  Aligned_cols=99  Identities=17%  Similarity=0.332  Sum_probs=73.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc-cc-cCCHHHH-----H----HHHHHHHhCCcEEEcCCceE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM-AR-LFTPKIA-----S----YYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l-~~-~~~~~~~-----~----~~~~~l~~~GV~i~~~~~v~  228 (479)
                      .++++|||+|+.|+.+|..|++.+.  +|+++.+.+... .+ .+...+.     +    .-.+.+++.+|+++.++.+.
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~   82 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK   82 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence            5789999999999999999999875  799998775421 10 1222110     0    01345677899999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .++.. + +  .+.+.+|+++.+|.+++|||.+|..
T Consensus        83 ~id~~-~-~--~v~~~~g~~~~yd~LViATGs~~~~  114 (396)
T PRK09754         83 TLGRD-T-R--ELVLTNGESWHWDQLFIATGAAARP  114 (396)
T ss_pred             EEECC-C-C--EEEECCCCEEEcCEEEEccCCCCCC
Confidence            99762 2 2  4667888899999999999999854

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.37  E-value=1.6e-06  Score=88.98  Aligned_cols=100  Identities=21%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+... . +.             ++       ........+.+++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-------------~~-------~~~~~~~~~~l~~  191 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-------------FD-------EEMNQIVEEELKK  191 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-------------cC-------HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999875310 0 00             00       0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.++..+.+.+++++.+|.||+|+|.+|...
T Consensus       192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence            999999999999998776654666788999999999999987643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.37  E-value=7.6e-07  Score=68.26  Aligned_cols=78  Identities=19%  Similarity=0.362  Sum_probs=57.5

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG   85 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (479)
                      +++|||||+.|+.+|..|+++|.+   |+++++.+...   +                .+    .........+++++.|
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~----------------~~----~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---P----------------GF----DPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---T----------------TS----SHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---h----------------hc----CHHHHHHHHHHHHHCC
Confidence            589999999999999999998876   99999986421   0                00    0111234567788999


Q ss_pred             cEEEeCceEEEEECCCcE--EEeCCC
Q 011700           86 IELVLGTRVKSADVRRKT--LVTATG  109 (479)
Q Consensus        86 v~~~~~~~v~~i~~~~~~--v~~~~g  109 (479)
                      |+++.++.+.+++.++..  |+++||
T Consensus        55 V~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   55 VEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            999999999999876543  555443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.37  E-value=6.7e-07  Score=92.91  Aligned_cols=57  Identities=25%  Similarity=0.309  Sum_probs=49.0

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      -..+.+.+.+.+++.|++|+++++|++|.. ++++.+.+...+|+.+++|.|+.....
T Consensus       223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence            356788899999999999999999999998 566666777788878999999999876

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.37  E-value=5.1e-06  Score=87.10  Aligned_cols=102  Identities=21%  Similarity=0.318  Sum_probs=80.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cccc-----------cccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      ...+++|||+|+.|+.+|..+++.|.+|+++...  ..+.           +....+++.+.+.+.+++.|++++.+++|
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V  290 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA  290 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence            4578999999999999999999999999998642  1111           11134677888888899999999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .+++.. ++ ...+.+.+|+.+.+|.+++|+|.+|..
T Consensus       291 ~~I~~~-~~-~~~v~~~~g~~i~~d~lIlAtGa~~~~  325 (515)
T TIGR03140       291 KKIETE-DG-LIVVTLESGEVLKAKSVIVATGARWRK  325 (515)
T ss_pred             EEEEec-CC-eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence            999763 22 235667788899999999999998754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06126 hypothetical protein; Provisional

Probab=98.36  E-value=1.8e-06  Score=91.49  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+||||||+|+++|..|+++|++   |+|+|+.+.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            57999999999999999999999998   999998864

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.36  E-value=5.3e-07  Score=89.61  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=30.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+||||||+|+++|..|+++|++   |+|||+.+.
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~   35 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGID---VTIIERRPD   35 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence            37999999999999999999999998   999999876

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07588 hypothetical protein; Provisional

Probab=98.36  E-value=2.5e-06  Score=86.43  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--cc-cc--------cccC--CCCCCCCCCc------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP--AL-SK--------GYLL--PEAPARLPSF------   65 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--~l-~~--------~~~~--~~~~~~~~~~------   65 (479)
                      +||+|||||++|+++|..|++.|++   |+|+|+.+...-...  .+ ..        ++..  ......+..+      
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~   77 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT   77 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence            3899999999999999999999987   999998864210000  00 00        0000  0000000000      


Q ss_pred             -------c-----cccCCcccC----CCHhHH---HHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCC
Q 011700           66 -------H-----TCVGANEER----LTPKWY---NEHGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGAR  124 (479)
Q Consensus        66 -------~-----~~~~~~~~~----~~~~~~---~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~  124 (479)
                             .     ...+.....    .+...+   ...+++++.+++|.+++.+...  +.+.+|+++++|.||.|.|.+
T Consensus        78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~  157 (391)
T PRK07588         78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH  157 (391)
T ss_pred             CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence                   0     000000000    011111   1346899999999999876554  556788889999999999977


Q ss_pred             ccc
Q 011700          125 ALK  127 (479)
Q Consensus       125 ~~~  127 (479)
                      ...
T Consensus       158 S~v  160 (391)
T PRK07588        158 SHV  160 (391)
T ss_pred             ccc
Confidence            544

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.36  E-value=2.7e-06  Score=89.20  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+.+.+++.|+++++++.|.+|.. +++++..|.+.+|+++.+|.||++++...
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLHH  276 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence            56788888899999999999999999987 45666788889998999999999887543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.35  E-value=9.6e-06  Score=82.69  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p  262 (479)
                      ..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.+     +.++.+|.||+|+|...
T Consensus       197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence            355667778888999999999999999863 3433 233322     23799999999999764

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.35  E-value=3.8e-06  Score=76.71  Aligned_cols=98  Identities=28%  Similarity=0.420  Sum_probs=67.2

Q ss_pred             EEECCChHHHHHHHHHhhCCCe-EEEEeecCccc--------------ccc----------------------------C
Q 011700          166 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCM--------------ARL----------------------------F  202 (479)
Q Consensus       166 vVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l--------------~~~----------------------------~  202 (479)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+.              +..                            .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999999 99999873221              000                            0


Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC--CCChh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  265 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~--~p~~~  265 (479)
                      -+++.+++++..++.+++++++++|++++.++++  ..|++.+++++.||.||+|+|.  .|...
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence            1345677888888999999999999999986555  5688899889999999999996  55544

...

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.35  E-value=1.6e-06  Score=87.59  Aligned_cols=120  Identities=24%  Similarity=0.331  Sum_probs=71.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---cc---------cccc---cCCCCCCCCC-----
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP---AL---------SKGY---LLPEAPARLP-----   63 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~---~l---------~~~~---~~~~~~~~~~-----   63 (479)
                      .+||+||||||+|+++|..|++.|++   |+|||+.+.......   .+         .-++   +.........     
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~---V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~   78 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLD---VTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD   78 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence            48999999999999999999999988   999999832111100   00         0000   0000000000     


Q ss_pred             --C-----cccc-cC-C---------cccCCCHhHHHHc-CcEEEeCceEEEEECCCc--EEEeC-CCcEEEeceEEeec
Q 011700           64 --S-----FHTC-VG-A---------NEERLTPKWYNEH-GIELVLGTRVKSADVRRK--TLVTA-TGETISYKILIIAT  121 (479)
Q Consensus        64 --~-----~~~~-~~-~---------~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~--~v~~~-~g~~~~~d~lviAt  121 (479)
                        .     +... .+ .         .....+.+.+.+. +++++.+++|..++.+..  ++++. +|+++++|.||-|-
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD  158 (387)
T COG0654          79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD  158 (387)
T ss_pred             cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence              0     0000 00 0         0001112223333 499999999999987653  45666 88999999999999


Q ss_pred             CCCcc
Q 011700          122 GARAL  126 (479)
Q Consensus       122 G~~~~  126 (479)
                      |....
T Consensus       159 G~~S~  163 (387)
T COG0654         159 GANSA  163 (387)
T ss_pred             CCchH
Confidence            97643

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.35  E-value=1.3e-06  Score=88.25  Aligned_cols=119  Identities=23%  Similarity=0.272  Sum_probs=70.4

Q ss_pred             eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-Cccc---------ccccCC--CCCCCCCCccc
Q 011700            6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPVAPYE-----R-PALS---------KGYLLP--EAPARLPSFHT   67 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~~~~~-----~-~~l~---------~~~~~~--~~~~~~~~~~~   67 (479)
                      ||+||||||+|+++|..|+++| ++   |+|+|+.+.....     + ..+.         -++...  ........+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~   77 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV   77 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence            7999999999999999999999 87   9999998643211     0 0000         000000  00000000000


Q ss_pred             c--------------cCCc-----c-cCCCH----hHHHH-cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEee
Q 011700           68 C--------------VGAN-----E-ERLTP----KWYNE-HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIA  120 (479)
Q Consensus        68 ~--------------~~~~-----~-~~~~~----~~~~~-~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviA  120 (479)
                      .              .+..     . ...+.    +.+.+ .|++++.+++|+++..+..  ++.+.+++++.+|.||.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A  157 (382)
T TIGR01984        78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA  157 (382)
T ss_pred             EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence            0              0000     0 00011    12234 4899999999999875443  456677888999999999


Q ss_pred             cCCCccc
Q 011700          121 TGARALK  127 (479)
Q Consensus       121 tG~~~~~  127 (479)
                      .|.....
T Consensus       158 dG~~S~v  164 (382)
T TIGR01984       158 DGANSKV  164 (382)
T ss_pred             cCCChHH
Confidence            9977543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.35  E-value=2.3e-06  Score=87.57  Aligned_cols=54  Identities=26%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeecc-ccccccCceee-cccHHHHHHHHHHHHHHHcC
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRR-LEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~-~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..|+|.||...||++|++||+|.|+. ..   +|..+. -.....+.--|+.|++++..
T Consensus       330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~  385 (433)
T PRK06175        330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS  385 (433)
T ss_pred             ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999974 22   222111 12345667788888888753

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.34  E-value=1.2e-05  Score=80.55  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=40.8

Q ss_pred             CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+...+.+.+.++ |++++.+++|.+++.  +    .+.+.+| ++.+|.||+|+|...+
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~s~  198 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGADFE  198 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCChh
Confidence            345666777777665 999999999999964  2    4666666 4789999999997543

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.34  E-value=3.1e-06  Score=84.81  Aligned_cols=116  Identities=19%  Similarity=0.253  Sum_probs=66.2

Q ss_pred             eEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCc------cccc---ccCCCCCCCCCCcccccCCcc-
Q 011700            6 VYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPA------LSKG---YLLPEAPARLPSFHTCVGANE-   73 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~------l~~~---~~~~~~~~~~~~~~~~~~~~~-   73 (479)
                      ||+|||||+||+++|..|++.  |++   |+++|+.+...-+++.      +...   .+.......++.+........ 
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~   77 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR   77 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh
Confidence            799999999999999999986  665   9999998742211111      1000   000000111121111110000 


Q ss_pred             ----------cCCCHhH-HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc
Q 011700           74 ----------ERLTPKW-YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        74 ----------~~~~~~~-~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                                ...+.+. ++..+..+..+++|..++.+  .+++.+|+++++|.||-|.|..+.
T Consensus        78 ~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        78 KLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             hcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCCC
Confidence                      0001111 22224446667788888654  366678899999999999997753

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.34  E-value=2e-06  Score=87.16  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +||+||||||||++||..|++.|++   |+|+|+.+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCC
Confidence            5899999999999999999999998   99999875

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.33  E-value=2e-06  Score=91.32  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||||||||.||++||+++++.|. ..+|+|+||.+.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence            46899999999999999999998652 123999999864

>PLN02612 phytoene desaturase

Probab=98.33  E-value=9.5e-06  Score=85.90  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      ..+.+.+.+.+++.|.++++++.|++|+.++++.+..+.+.+|+++++|.||++++
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p  363 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP  363 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence            55778888888889999999999999998667767678888899999999999975

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.32  E-value=4.6e-07  Score=92.68  Aligned_cols=115  Identities=24%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----cccc---------c----ccCCC-C--CCCC-C
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-----ALSK---------G----YLLPE-A--PARL-P   63 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-----~l~~---------~----~~~~~-~--~~~~-~   63 (479)
                      ||||||||+||++||+.+++.|.+   |+|||+.+.......     ....         +    +.... .  .... +
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence            899999999999999999999998   999999976321100     0000         0    00000 0  0000 0


Q ss_pred             Ccc----cccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEE---EeCC---CcEEEeceEEeecCC
Q 011700           64 SFH----TCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTL---VTAT---GETISYKILIIATGA  123 (479)
Q Consensus        64 ~~~----~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v---~~~~---g~~~~~d~lviAtG~  123 (479)
                      ...    .... ......+.+++.+.|++++.++.+..+..++..|   .+.+   ..++.++.+|-|||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000    0000 1111234556677899999999999988876443   3332   467999999999994

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.32  E-value=2.3e-05  Score=79.21  Aligned_cols=58  Identities=24%  Similarity=0.339  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+...+.+.+++.| ..+..++.+..++.. . ....+.+.+|+ +.+|.||+|+|...+
T Consensus       155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            3467778888888999 555568888888763 2 45678888886 999999999995533

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.31  E-value=1.2e-05  Score=83.01  Aligned_cols=58  Identities=19%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI  260 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~  260 (479)
                      ...+.+.+.+.+++.|+++++++.|++|+..++++++.+.+.+++     ++.+|.||+++..
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            355677888888889999999999999986556767778886665     7999999999864

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.31  E-value=3e-06  Score=87.05  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||+||||||||++||..|++.|++   |+|+|+.+
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCC
Confidence            58999999999999999999999998   89999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.31  E-value=3.5e-06  Score=86.83  Aligned_cols=101  Identities=19%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcc------cc----ccCC--HHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MA----RLFT--PKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~------l~----~~~~--~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      ++++|||+|+.|+.+|..|++++  .+|+++++++.+      ++    ..++  .++.....+.+++.||+++.++.+.
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~   80 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV   80 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence            37999999999999999999875  489999988753      11    1011  1223334566788899999999999


Q ss_pred             EEEEcCCCcEEEEEe-CCCcEEe--ccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~-~~g~~i~--~D~Vi~a~G~~p~~~  265 (479)
                      +++.+ +. ...+.. .++++++  +|.+++|||.+|+..
T Consensus        81 ~id~~-~~-~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         81 KVDAK-NK-TITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             EEECC-CC-EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            99862 32 223332 2355666  999999999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.31  E-value=1.6e-05  Score=81.88  Aligned_cols=103  Identities=20%  Similarity=0.266  Sum_probs=76.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------------------
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------  200 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------  200 (479)
                      ..++|+|||+|+.|+-+|..|.+.|.+|+++++++.+-..                                        
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            3689999999999999999999999999999986422100                                        


Q ss_pred             ----c-------------C--CHHHHHHHHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCCC--c--EEeccEEE
Q 011700          201 ----L-------------F--TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDG--N--RLPTDMVV  255 (479)
Q Consensus       201 ----~-------------~--~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~g--~--~i~~D~Vi  255 (479)
                          .             +  ..++.++++++.++.|++  ++++++|.+++.. +++ ..|.+.++  .  +..+|.||
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d~VI  166 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFDAVV  166 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcCEEE
Confidence                0             0  145777788888888988  8899999999873 333 34554432  2  46799999


Q ss_pred             EecC--CCCChh
Q 011700          256 VGIG--IRPNTS  265 (479)
Q Consensus       256 ~a~G--~~p~~~  265 (479)
                      +|+|  ..|+..
T Consensus       167 vAtG~~~~P~~P  178 (461)
T PLN02172        167 VCNGHYTEPNVA  178 (461)
T ss_pred             EeccCCCCCcCC
Confidence            9999  466654

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.31  E-value=3.3e-06  Score=85.00  Aligned_cols=34  Identities=15%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||+|||||+.|+++|++|+++|++   |+|+|++.
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~~---V~lie~~~   36 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGLR---VLGLDRFM   36 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCe---EEEEeccc
Confidence            58999999999999999999999876   99999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.30  E-value=2.9e-06  Score=85.52  Aligned_cols=99  Identities=18%  Similarity=0.341  Sum_probs=74.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+... .      ..        ++       ........+.+++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~-------~~~~~~l~~~l~~  195 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MP-------PEVSSRLQHRLTE  195 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CC-------HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875311 0      00        00       0011234566788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.+.+++.+..  .+.+.+++++.+|.+|+|+|.+|..
T Consensus       196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence            9999999999999987643  4566788899999999999998853

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.30  E-value=1.1e-05  Score=83.58  Aligned_cols=55  Identities=16%  Similarity=0.240  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      +..+...+.+.+++.|++++.++.|.+++. .+ . ..|.+.+| ++.+|.||+|+|.-
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~-~-~~v~t~~g-~v~A~~VV~Atga~  236 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ-P-AVVRTPDG-QVTADKVVLALNAW  236 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC-c-eEEEeCCc-EEECCEEEEccccc
Confidence            456677888888999999999999999975 22 2 34666666 69999999999854

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK05868 hypothetical protein; Validated

Probab=98.30  E-value=3.8e-06  Score=84.40  Aligned_cols=119  Identities=16%  Similarity=0.187  Sum_probs=70.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccccC--CCCCCCCCCc------
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGYLL--PEAPARLPSF------   65 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~~~--~~~~~~~~~~------   65 (479)
                      +||+|||||++|+++|..|++.|++   |+|+|+.+...-....+  .         -++..  ..........      
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~   78 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD   78 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence            5999999999999999999999987   99999986521100000  0         00000  0000000000      


Q ss_pred             -------------ccccCC-cccC---CCHhHHH---HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCC
Q 011700           66 -------------HTCVGA-NEER---LTPKWYN---EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGA  123 (479)
Q Consensus        66 -------------~~~~~~-~~~~---~~~~~~~---~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~  123 (479)
                                   ...... ....   .+.+.+.   ..+++++.++++++++.+..  ++.+.++.++++|.||-|-|.
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~  158 (372)
T PRK05868         79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL  158 (372)
T ss_pred             CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence                         000000 0000   1112222   35899999999999875544  456678889999999999997


Q ss_pred             Ccc
Q 011700          124 RAL  126 (479)
Q Consensus       124 ~~~  126 (479)
                      +..
T Consensus       159 ~S~  161 (372)
T PRK05868        159 HSN  161 (372)
T ss_pred             Cch
Confidence            653

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.29  E-value=2.5e-06  Score=86.05  Aligned_cols=119  Identities=24%  Similarity=0.303  Sum_probs=70.6

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-Cccc---------ccccCC--C-CCCCCCCcc
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE------R-PALS---------KGYLLP--E-APARLPSFH   66 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~------~-~~l~---------~~~~~~--~-~~~~~~~~~   66 (479)
                      ||+||||||||+++|..|++.|++   |+|+|+.+.....      + ..++         -++...  . .......+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~   77 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLK---IALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH   77 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCE---EEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence            799999999999999999999987   9999999752111      0 0000         000000  0 000000000


Q ss_pred             -----------ccc---CCc----------ccCCCHhHHHHcC-cEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEe
Q 011700           67 -----------TCV---GAN----------EERLTPKWYNEHG-IELVLGTRVKSADVRRKT--LVTATGETISYKILII  119 (479)
Q Consensus        67 -----------~~~---~~~----------~~~~~~~~~~~~g-v~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lvi  119 (479)
                                 ...   ...          ....+.+.+.+.+ ++++.+++|++++.+...  +.+.+|+++.+|.||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~  157 (385)
T TIGR01988        78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG  157 (385)
T ss_pred             EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence                       000   000          0001112233455 999999999998765544  4557888899999999


Q ss_pred             ecCCCccc
Q 011700          120 ATGARALK  127 (479)
Q Consensus       120 AtG~~~~~  127 (479)
                      |.|.....
T Consensus       158 adG~~S~v  165 (385)
T TIGR01988       158 ADGANSKV  165 (385)
T ss_pred             eCCCCCHH
Confidence            99977543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.27  E-value=3.6e-06  Score=87.06  Aligned_cols=98  Identities=17%  Similarity=0.334  Sum_probs=72.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+.+|..+++.|.+   |+++++.+...                   +.+.    .+......+.+++.
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll-------------------~~~d----~e~~~~l~~~L~~~  224 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLL-------------------PGED----EDIAHILREKLEND  224 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC-------------------cccc----HHHHHHHHHHHHHC
Confidence            5899999999999999999998876   89999875310                   0000    01112345667788


Q ss_pred             CcEEEeCceEEEEECCCcEEEeC-CC--cEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTA-TG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~-~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      |++++.++++.+++.++..+.+. ++  .++.+|.|++|+|.+|...
T Consensus       225 GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~  271 (458)
T PRK06912        225 GVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ  271 (458)
T ss_pred             CCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence            99999999999998766555442 33  3689999999999988753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.27  E-value=1.2e-05  Score=87.11  Aligned_cols=58  Identities=9%  Similarity=0.149  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+.+.+.+.+++ |++++.++.|++++.. ++.+ .+.+.++..+.+|.||+|+|....
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~-~v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGW-QLDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEE-EEEECCCcEEECCEEEECCCCCcc
Confidence            45677778888888 9999999999999863 4444 377778877899999999997643

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.27  E-value=4.5e-05  Score=77.67  Aligned_cols=57  Identities=19%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      ..+...+.+.+++.|++++.+++|++++..+++.+..+.+.+| ++.++.||+++|-.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~  239 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH  239 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence            3455667778889999999999999997634566666777777 69999998887754

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07233 hypothetical protein; Provisional

Probab=98.26  E-value=4.3e-06  Score=85.83  Aligned_cols=56  Identities=23%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      ..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+. .+++++++|.||++++..
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~-~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGVE-VDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEEE-eCCceEECCEEEECCCHH
Confidence            567788888898999999999999999873 44443333 566789999999998753

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.26  E-value=1.3e-06  Score=77.81  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..||+||||||+||+||++|++.|++   |+++|++-.
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls   64 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS   64 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence            36999999999999999999999998   999999854

>PRK06753 hypothetical protein; Provisional

Probab=98.26  E-value=6.9e-06  Score=82.62  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------ccccCC--CCCCCCCCccc--cc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYLLP--EAPARLPSFHT--CV   69 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~~~--~~~~~~~~~~~--~~   69 (479)
                      +||+||||||||+++|..|++.|++   |+|+|+.+........  +.         -++...  ........+..  ..
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~   77 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDK   77 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCC
Confidence            3899999999999999999999987   9999998752111000  00         000000  00000000000  00


Q ss_pred             CC-----------cc----cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcc
Q 011700           70 GA-----------NE----ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        70 ~~-----------~~----~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                      +.           ..    ...+.+.+.+  .+.+++.++++++++.++.  ++++.+|+++.+|.||-|.|.+..
T Consensus        78 g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753         78 GTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            00           00    0011222222  2457888999999976554  455678888999999999997643

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.26  E-value=2.7e-06  Score=88.99  Aligned_cols=38  Identities=18%  Similarity=0.458  Sum_probs=35.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |++.+||||||||..|+++|++|+++|++   |+|||+++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~---V~LvEk~d~   40 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLS---VLLCEQDDL   40 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            66779999999999999999999999998   999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.25  E-value=5.4e-06  Score=86.71  Aligned_cols=36  Identities=36%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||||||+|.||++||+++++.|.+   |+|||+.+.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~---VivlEK~~~   95 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMN---PVILEKMPV   95 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence            358999999999999999999999987   999999875

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.25  E-value=3.7e-06  Score=86.41  Aligned_cols=45  Identities=18%  Similarity=0.276  Sum_probs=35.5

Q ss_pred             CcEEEeCceEEEEEC---------CCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           85 GIELVLGTRVKSADV---------RRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        85 gv~~~~~~~v~~i~~---------~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      +++++.++++.+++.         +.-++.+.+|+++++|.||-|-|.....-.
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~  187 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRK  187 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence            489999999999863         223566788899999999999998765443

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.25  E-value=3.5e-06  Score=84.80  Aligned_cols=33  Identities=27%  Similarity=0.473  Sum_probs=30.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +||+||||||+|+++|..|++.|++   |+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence            7999999999999999999999987   99999863

>PRK14694 putative mercuric reductase; Provisional

Probab=98.24  E-value=5e-06  Score=86.27  Aligned_cols=98  Identities=17%  Similarity=0.242  Sum_probs=71.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|+++|.+   |+++++....+.                    +    .........+.+++
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~----~~~~~~~l~~~l~~  230 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQ--------------------E----DPAVGEAIEAAFRR  230 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCC--------------------C----CHHHHHHHHHHHHh
Confidence            36899999999999999999998876   899986532110                    0    00111345667788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.++..+.+ .++.++.+|.||+|+|.+|...
T Consensus       231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~  276 (468)
T PRK14694        231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE  276 (468)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence            99999999999999876654332 2344799999999999998754

>PRK06847 hypothetical protein; Provisional

Probab=98.23  E-value=1.5e-05  Score=80.14  Aligned_cols=102  Identities=23%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------------------------c--
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------------R--  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~--  200 (479)
                      .++|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                       .  
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            57899999999999999999999999999987642100                                       0  


Q ss_pred             ---cC-----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          201 ---LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       201 ---~~-----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                         .+                 .+++.+.+.+.+++.|++++.++++++++.+ ++. ..+.+.+|+++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~ad~vI~AdG~  161 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD-DDG-VTVTFSDGTTGRYDLVVGADGL  161 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCE-EEEEEcCCCEEEcCEEEECcCC
Confidence               00                 0345566777777789999999999999873 333 3577888999999999999998


Q ss_pred             CCChh
Q 011700          261 RPNTS  265 (479)
Q Consensus       261 ~p~~~  265 (479)
                      .+...
T Consensus       162 ~s~~r  166 (375)
T PRK06847        162 YSKVR  166 (375)
T ss_pred             Ccchh
Confidence            87654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.23  E-value=5.7e-06  Score=85.95  Aligned_cols=99  Identities=20%  Similarity=0.295  Sum_probs=71.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||++|+.+|..|++.|.+   |+++++.+...                   |.+.    ........+.+++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il-------------------~~~~----~~~~~~l~~~l~~  233 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL-------------------PTED----AELSKEVARLLKK  233 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC-------------------CcCC----HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310                   0000    0011234566788


Q ss_pred             cCcEEEeCceEEEEEC--CCcE-E-EeCCC--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADV--RRKT-L-VTATG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~--~~~~-v-~~~~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.  +++. + ...+|  +++.+|.+|+|+|.+|...
T Consensus       234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  284 (472)
T PRK05976        234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE  284 (472)
T ss_pred             cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence            8999999999999874  3333 2 23455  4699999999999998753

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.23  E-value=2.6e-06  Score=77.57  Aligned_cols=137  Identities=27%  Similarity=0.385  Sum_probs=96.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--ccCCH-----------HHH--H--HHHHHHHhCCcEEEcCCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV  226 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~GV~i~~~~~  226 (479)
                      +++|||+|+.|+.+|..|.+.+.+++++++.+....  ..+..           ...  +  .+.+.++..+++++.+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   80 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK   80 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence            489999999999999999999999999977653110  00000           011  1  334445678999999999


Q ss_pred             eEEEEEcCCCc-------EEEEEeCCCcEEeccEEEEecCCCCChhh-------------------h-------------
Q 011700          227 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F-------------  267 (479)
Q Consensus       227 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l-------------------~-------------  267 (479)
                      +.+++. ..+.       +......++.++.+|.+|+|+|.+|+...                   .             
T Consensus        81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  159 (201)
T PF07992_consen   81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG  159 (201)
T ss_dssp             EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred             cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence            999987 3332       11223455678999999999997755220                   0             


Q ss_pred             ------hccccc-ccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700          268 ------EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP  301 (479)
Q Consensus       268 ------~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~  301 (479)
                            ..++.. ++|++.||+++||+.|+|||+|||+..+
T Consensus       160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~  200 (201)
T PF07992_consen  160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY  200 (201)
T ss_dssp             TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred             ccccccccccccccccccccccccccccccccccccccccC
Confidence                  012334 5788999999999999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.21  E-value=5.8e-06  Score=85.66  Aligned_cols=98  Identities=20%  Similarity=0.338  Sum_probs=73.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+.+|..|+++|.+   |+++++.+...                   |.+.    ........+.+++.
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~~  226 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL-------------------PGED----KEISKLAERALKKR  226 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC-------------------CcCC----HHHHHHHHHHHHHc
Confidence            5899999999999999999998876   99999875310                   0000    01113345667889


Q ss_pred             CcEEEeCceEEEEECCCcEE--EeCCC---cEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRKTL--VTATG---ETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v--~~~~g---~~~~~d~lviAtG~~~~~~  128 (479)
                      |++++.++++.+++.+...+  .+.++   +++.+|.+|+|+|.+|...
T Consensus       227 gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~  275 (462)
T PRK06416        227 GIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE  275 (462)
T ss_pred             CCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence            99999999999998765443  33444   6799999999999998654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.21  E-value=4.2e-06  Score=87.51  Aligned_cols=38  Identities=16%  Similarity=0.392  Sum_probs=34.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |+.++||+|||||+.|+++|++|+++|++   |+|+|+++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~---V~LlEk~d~   40 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLK---VLLCEKDDL   40 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence            45579999999999999999999999987   999999964

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.20  E-value=4.3e-05  Score=79.12  Aligned_cols=58  Identities=14%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHh----CC--cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          204 PKIASYYEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       204 ~~~~~~~~~~l~~----~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ..+...+.+.+++    .|  ++++++++|++|+.. ++....|.+.+| ++.+|.||+|+|....
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            3567777788887    77  889999999999873 344456777776 6999999999996543

>PLN02661 Putative thiazole synthesis

Probab=98.20  E-value=8.3e-06  Score=79.52  Aligned_cols=35  Identities=34%  Similarity=0.381  Sum_probs=31.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|++||++|++. |++   |+|||+...
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~  127 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVS  127 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCcc
Confidence            57999999999999999999975 565   999999864

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.20  E-value=7.3e-06  Score=82.15  Aligned_cols=97  Identities=21%  Similarity=0.309  Sum_probs=72.5

Q ss_pred             CEEEECCChHHHHHHHHHhhC---CCeEEEEeecCccccc-cC---------CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMAR-LF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~l~~-~~---------~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +++|||||+.|+.+|..+.+.   +.+|+++++++...-. .+         ..++...+.+.+++.||+++.+ ++.++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i   79 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI   79 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence            589999999999999999643   6899999988653211 11         1223334556677889999876 68888


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+  .+  .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus        80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~  110 (364)
T TIGR03169        80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS  110 (364)
T ss_pred             ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence            762  22  47778888999999999999988754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.20  E-value=4e-06  Score=88.44  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||||..|+++|++|+++|++   |+|||++..
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~---V~LlEk~d~   40 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLR---CILVERHDI   40 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCC
Confidence            58999999999999999999999987   999999764

>PRK06116 glutathione reductase; Validated

Probab=98.20  E-value=7.1e-06  Score=84.72  Aligned_cols=99  Identities=20%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~L~~  220 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL-------------------RGFD----PDIRETLVEEMEK  220 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99998875310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.|.+++.+.   ..+.+.+|+++.+|.+|+|+|.+|...
T Consensus       221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~  268 (450)
T PRK06116        221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD  268 (450)
T ss_pred             CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence            999999999999997542   245666788899999999999988654

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.20  E-value=9.4e-06  Score=83.06  Aligned_cols=102  Identities=25%  Similarity=0.371  Sum_probs=72.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC---------C-HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      ..+++||||||+.|+.+|..|.+.+.+||++++++.+.-...         + .++...+.+.++..+++++.+ +|++|
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I   87 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV   87 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence            457899999999999999999777789999998876432111         1 223334556667778998765 68899


Q ss_pred             EEcCCCcEEEEEe--------CCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~--------~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+ +..+ .+..        .+++++++|.+++|+|.+|+..
T Consensus        88 d~~-~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~  128 (424)
T PTZ00318         88 DFE-EKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF  128 (424)
T ss_pred             EcC-CCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence            862 3322 2211        4567899999999999987653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.19  E-value=1.8e-06  Score=77.39  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+||+||++|++.|++   |++||++..
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~   51 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS   51 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence            58999999999999999999999998   999999854

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.19  E-value=7.5e-06  Score=84.38  Aligned_cols=98  Identities=21%  Similarity=0.249  Sum_probs=73.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..+++.|.+   |+++++.+...                   +.+.    .+......+.+++
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  219 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELIL-------------------RGFD----DDMRALLARNMEG  219 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCC-------------------cccC----HHHHHHHHHHHHH
Confidence            35799999999999999999998876   99999875310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.+.+++.++  ..+.+.+++++.+|.+|+|+|.+|..
T Consensus       220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~  265 (446)
T TIGR01424       220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT  265 (446)
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence            999999999999987533  34555677889999999999998864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.19  E-value=7.7e-06  Score=84.08  Aligned_cols=95  Identities=14%  Similarity=0.182  Sum_probs=73.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+..|..|++.|.+   |+++++.+...   +.                +    ..+......+.+++.
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~----------------~----d~~~~~~l~~~l~~~  202 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL----------------M----DADMNQPILDELDKR  202 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh----------------c----CHHHHHHHHHHHHhc
Confidence            5899999999999999999998876   99999875310   00                0    001113345667889


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      ||+++.++.+.+++.  ..+.+.+++++.+|.+++|+|.+|..
T Consensus       203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~  243 (438)
T PRK13512        203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNS  243 (438)
T ss_pred             CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence            999999999999874  46777778889999999999999864

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.18  E-value=4.7e-06  Score=78.83  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=37.7

Q ss_pred             HhHHHHcCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCC
Q 011700           78 PKWYNEHGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGAR  124 (479)
Q Consensus        78 ~~~~~~~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~  124 (479)
                      +..+++.|+.++.+.+|..+...     ...|.+.+|..+.++++|+++|+.
T Consensus       160 ~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  160 QDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             HHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            34566789999999888877632     245778888889999999999976

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.17  E-value=1e-05  Score=82.38  Aligned_cols=100  Identities=22%  Similarity=0.312  Sum_probs=76.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+-|+..|..++++|.+   |||+|+.+..                   +|.+.    .+....+.+.+++
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~i-------------------Lp~~D----~ei~~~~~~~l~~  226 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRI-------------------LPGED----PEISKELTKQLEK  226 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCC-------------------CCcCC----HHHHHHHHHHHHh
Confidence            46799999999999999999999988   9999998641                   11111    1122345566777


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCc--EEEeceEEeecCCCccccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGE--TISYKILIIATGARALKLE  129 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~--~~~~d~lviAtG~~~~~~~  129 (479)
                      .+++++.++.+..++..+.  .+.+++++  ++.+|++++|+|-+|+...
T Consensus       227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~  276 (454)
T COG1249         227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG  276 (454)
T ss_pred             CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence            7899999999998876654  45566665  7899999999999987653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.16  E-value=9.8e-06  Score=83.98  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=74.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..+++.|.+   |+++++.+...                   +.+.    .+....+.+.+++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  228 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL-------------------SFLD----DEISDALSYHLRD  228 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC-------------------CcCC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999875310                   0000    0111334556778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.+.+++.++.  .+.+.+++++++|.+++|+|.+|...
T Consensus       229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  275 (461)
T PRK05249        229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD  275 (461)
T ss_pred             cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence            8999999999999875433  34556778899999999999998653

>PRK06996 hypothetical protein; Provisional

Probab=98.15  E-value=8.6e-06  Score=82.71  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC-CC--CC-cc---------cccccCCCCCCCC-------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAP-YE--RP-AL---------SKGYLLPEAPARL-------   62 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~-~~--~~-~l---------~~~~~~~~~~~~~-------   62 (479)
                      .+||+||||||+|+++|..|++.|. +..+|+|+|+.+... ..  +. .+         .-+.+ ......+       
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~-~~~~~~~~~~~~~~   89 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAW-PADATPIEHIHVSQ   89 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCc-hhcCCcccEEEEec
Confidence            4799999999999999999999873 213499999975311 10  00 00         00000 0000000       


Q ss_pred             ----------------CCcccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCC---cEEEeceEEee
Q 011700           63 ----------------PSFHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATG---ETISYKILIIA  120 (479)
Q Consensus        63 ----------------~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g---~~~~~d~lviA  120 (479)
                                      +.+..... ......+.+.+.+.++++..++++..++.+...  +.+.++   +++++|.||-|
T Consensus        90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgA  169 (398)
T PRK06996         90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQA  169 (398)
T ss_pred             CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEEC
Confidence                            00000000 000111223345668999999999888655543  444433   58999999999


Q ss_pred             cCC
Q 011700          121 TGA  123 (479)
Q Consensus       121 tG~  123 (479)
                      .|.
T Consensus       170 DG~  172 (398)
T PRK06996        170 EGG  172 (398)
T ss_pred             CCC
Confidence            995

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.15  E-value=2.4e-06  Score=85.80  Aligned_cols=120  Identities=23%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---c---cccccCCC------------CCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---L---SKGYLLPE------------APARL   62 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l---~~~~~~~~------------~~~~~   62 (479)
                      |++.|||+|||||.||..||..++|.|.+   +.|+.-+.......+|   +   .|+.+..+            +...+
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~I   77 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGI   77 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCC
Confidence            66779999999999999999999999998   6777666542211111   1   12211100            00000


Q ss_pred             CC--cccccCCc--------ccCCCHhHHH-----HcCcEEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecCC
Q 011700           63 PS--FHTCVGAN--------EERLTPKWYN-----EHGIELVLGTRVKSADVRRK----TLVTATGETISYKILIIATGA  123 (479)
Q Consensus        63 ~~--~~~~~~~~--------~~~~~~~~~~-----~~gv~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG~  123 (479)
                      ..  +....|..        +...+..+++     ..|++++.+ .|.++..++.    -|.+.+|..+.++.|||+||.
T Consensus        78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            00  00001110        0111222222     358888887 6776665333    356788999999999999996


Q ss_pred             C
Q 011700          124 R  124 (479)
Q Consensus       124 ~  124 (479)
                      -
T Consensus       157 F  157 (621)
T COG0445         157 F  157 (621)
T ss_pred             c
Confidence            5

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.14  E-value=1.5e-05  Score=85.48  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||||||+|.||++||.++++.|.+   |+|+|+..
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~   68 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQD   68 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCC
Confidence            47999999999999999999998887   89999754

>PRK07538 hypothetical protein; Provisional

Probab=98.14  E-value=9.5e-06  Score=82.81  Aligned_cols=34  Identities=26%  Similarity=0.553  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+||||||+|+++|..|++.|++   |+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence            3899999999999999999999987   999999864

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.14  E-value=8e-06  Score=89.72  Aligned_cols=97  Identities=22%  Similarity=0.401  Sum_probs=73.6

Q ss_pred             EEEECCChHHHHHHHHHhhC---CCeEEEEeecCccc------cccCC-----HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          165 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      ++|||+|+.|+.+|..|.++   +.+||++.+.+++.      +..+.     +++.....+++++.||++++++.|++|
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I   80 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI   80 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence            58999999999999998775   46899999887642      11111     122222356778899999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +..  .+  .|.+.+|+++++|.+|+|||.+|+..
T Consensus        81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p  111 (785)
T TIGR02374        81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL  111 (785)
T ss_pred             ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence            762  22  46778888999999999999988764

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.13  E-value=1.7e-05  Score=85.08  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   41 (479)
                      |.+++||+||||||+||++|..|+++ |.+   |+|||+.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence            45678999999999999999999995 887   899998864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.13  E-value=1.4e-05  Score=82.30  Aligned_cols=33  Identities=36%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      ||||||+|.||++||+++++.| .+   |+|+|+.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence            7999999999999999999998 76   999999865

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR02053 MerA mercuric reductase

Probab=98.13  E-value=1.1e-05  Score=83.60  Aligned_cols=98  Identities=22%  Similarity=0.287  Sum_probs=71.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||+|+.|+.+|..|+++|.+   |+++++.+...                   |.+.    .+......+.+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~l~~~  220 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL-------------------PREE----PEISAAVEEALAEE  220 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC-------------------CccC----HHHHHHHHHHHHHc
Confidence            6899999999999999999998876   99999875310                   0000    00112345667788


Q ss_pred             CcEEEeCceEEEEECCCc--EEEeC---CCcEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRK--TLVTA---TGETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~--~v~~~---~g~~~~~d~lviAtG~~~~~~  128 (479)
                      ||+++.+++|..++.++.  .+.+.   +++++++|.+|+|+|.+|...
T Consensus       221 gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~  269 (463)
T TIGR02053       221 GIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD  269 (463)
T ss_pred             CCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence            999999999998876543  33332   236799999999999998754

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=98.13  E-value=1.2e-05  Score=83.33  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=72.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  224 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLL-------------------PRED----EDVAAAVREILER  224 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCC-------------------cccC----HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310                   0000    0011234566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEe---CCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVT---ATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~---~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.+.+++.++.  .+.+   .++.++.+|.||+|+|.+|...
T Consensus       225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence            9999999999999986543  2333   2345799999999999998753

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.12  E-value=7.6e-06  Score=81.63  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=69.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+++|..|.+.|.+|+++++.+.+...        .++.+......+.+.+.|++++.++.+..+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~   96 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP   96 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence            4789999999999999999999999999999988765321        12333334445566777999999987765432


Q ss_pred             --cCCCcEEEEEe--CCCcEEeccEEEEecCCC-CC
Q 011700          233 --DSNGKVVAVNL--RDGNRLPTDMVVVGIGIR-PN  263 (479)
Q Consensus       233 --~~~g~v~~v~~--~~g~~i~~D~Vi~a~G~~-p~  263 (479)
                        ..++.......  .++..+.+|.|++|+|.. |.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~  132 (352)
T PRK12770         97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSR  132 (352)
T ss_pred             cccccccccccccCCHHHHHhhCCEEEEEeCCCCCC
Confidence              00111111111  112247899999999984 43

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.12  E-value=1e-05  Score=81.93  Aligned_cols=34  Identities=18%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+||||||+|+++|..|++.|++   |+|+|+.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence            8999999999999999999999998   999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.11  E-value=9.3e-06  Score=86.94  Aligned_cols=35  Identities=26%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+.+++.|.+   |+|||+.+.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~   42 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF   42 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence            47999999999999999999998887   999999864

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.11  E-value=1.6e-05  Score=80.51  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=32.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+|+++|..|++.|++   |+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence            38999999999999999999999987   999999874

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.10  E-value=1.4e-05  Score=85.04  Aligned_cols=37  Identities=30%  Similarity=0.319  Sum_probs=31.2

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||. ++||||||+|.||++||+++++. .+   |+|+||.+.
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~   38 (583)
T PRK08205          1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP   38 (583)
T ss_pred             CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence            444 68999999999999999999874 44   999999754

>PRK07846 mycothione reductase; Reviewed

Probab=98.10  E-value=1.7e-05  Score=81.72  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=71.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    .+....+.+ +.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll-------------------~~~d----~~~~~~l~~-l~~  218 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL-------------------RHLD----DDISERFTE-LAS  218 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHH-HHh
Confidence            36899999999999999999998876   99999875311                   0000    000011222 235


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .+++++.++++.+++.++.  .+.+.+++++.+|.|++|+|.+|...
T Consensus       219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~  265 (451)
T PRK07846        219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD  265 (451)
T ss_pred             cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence            6899999999999986544  35556778899999999999998653

>PRK07121 hypothetical protein; Validated

Probab=98.09  E-value=8.2e-05  Score=77.72  Aligned_cols=66  Identities=23%  Similarity=0.283  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-Cc--EEec-cEEEEecCC-CCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~Vi~a~G~-~p~~~l~~  268 (479)
                      ...+.+.+.+.+++.|+++++++.++++..++++++..+...+ ++  .+.+ +.||+|+|- ..|.++++
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence            3557777888888999999999999999875456777776543 32  5778 999999994 45555554

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.09  E-value=1.4e-05  Score=83.00  Aligned_cols=99  Identities=17%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...   +..             +       .+......+.+++
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~-------------d-------~~~~~~~~~~l~~  236 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA-------------D-------EQVAKEAAKAFTK  236 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC-------------C-------HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999875310   000             0       0011234556778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCC--C--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTAT--G--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~--g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.|.+++.+...  +.+.+  +  +++++|.|++|+|.+|...
T Consensus       237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~  287 (475)
T PRK06327        237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD  287 (475)
T ss_pred             cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence            89999999999999866443  33333  3  4699999999999998754

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.09  E-value=1.5e-05  Score=82.62  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+..           +        |.+.    ........+.+++
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~-----------l--------~~~d----~~~~~~l~~~l~~  225 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRA-----------L--------PNED----AEVSKEIAKQYKK  225 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCc-----------C--------CccC----HHHHHHHHHHHHH
Confidence            35899999999999999999998876   8999876421           0        0000    0011334567788


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeC--CC--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTA--TG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~--~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.|.+++.++..  +.+.  +|  +++++|.||+|+|.+|...
T Consensus       226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence            99999999999999765543  3332  45  4799999999999988653

>PRK07236 hypothetical protein; Provisional

Probab=98.09  E-value=2.1e-05  Score=79.56  Aligned_cols=103  Identities=24%  Similarity=0.350  Sum_probs=74.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----cCCHHHHHHHH------------------------
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYE------------------------  211 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------  211 (479)
                      ...+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+.+.                        
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g   84 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG   84 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence            3578999999999999999999999999999988643221     01232222221                        


Q ss_pred             -------------------HHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          212 -------------------EYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       212 -------------------~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                         +.|.+  .+++++.++++++++.+ ++. ..+.+.+|+++.+|.||.|-|......
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vIgADG~~S~vR  157 (386)
T PRK07236         85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD-GDR-VTARFADGRRETADLLVGADGGRSTVR  157 (386)
T ss_pred             CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec-CCe-EEEEECCCCEEEeCEEEECCCCCchHH
Confidence                               11111  13568899999999874 333 357889999999999999999876553

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.09  E-value=4.7e-06  Score=85.20  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=29.6

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||||||+|.||++||++|+++|.+   |+|||+.+.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~---V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAK---VLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT----EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCe---EEEEEeecc
Confidence            899999999999999999999987   999999976

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.09  E-value=1.7e-05  Score=87.43  Aligned_cols=100  Identities=18%  Similarity=0.354  Sum_probs=75.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC----CCeEEEEeecCccc------cccC----CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~----g~~Vtlv~~~~~~l------~~~~----~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .++++|||+|+.|+.+|..|.+.    +.+||++.+.+++.      +..+    ..++.....+.+++.||+++.++.+
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V   82 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA   82 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence            36899999999999999999764    47899999887642      1111    1122222345678899999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .+++.  +.+  .|.+.+|+++++|.+|+|||.+|...
T Consensus        83 ~~Id~--~~~--~V~~~~G~~i~yD~LVIATGs~p~~p  116 (847)
T PRK14989         83 ITINR--QEK--VIHSSAGRTVFYDKLIMATGSYPWIP  116 (847)
T ss_pred             EEEeC--CCc--EEEECCCcEEECCEEEECCCCCcCCC
Confidence            99875  222  46678888999999999999988754

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.08  E-value=1.7e-05  Score=81.81  Aligned_cols=99  Identities=18%  Similarity=0.111  Sum_probs=73.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-------------------~~~d----~~~~~~~~~~l~~  219 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-------------------RSFD----SMISETITEEYEK  219 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999875310                   0000    0011334566788


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCC-cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATG-ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g-~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.+.   ..+.+.++ +.+.+|.+++|+|.+|...
T Consensus       220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~  268 (450)
T TIGR01421       220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK  268 (450)
T ss_pred             cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence            999999999999987542   24555666 5799999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.08  E-value=1.7e-05  Score=78.99  Aligned_cols=99  Identities=26%  Similarity=0.419  Sum_probs=77.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccC----------CHHHHHHHHHHHHhCC-cEEEcCCceE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKG-VKFVKGTVLS  228 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~G-V~i~~~~~v~  228 (479)
                      .+++||||||+-|+..+..|.+.-  .+||++++.+..+-..+          +.++...+.+.++..+ |+++.+ +|+
T Consensus         3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~   81 (405)
T COG1252           3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT   81 (405)
T ss_pred             CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence            578999999999999999999874  88999999876542211          2345556777787556 998876 488


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +|+.  +.+  .|.+.++.++++|.+++++|..+++.
T Consensus        82 ~ID~--~~k--~V~~~~~~~i~YD~LVvalGs~~~~f  114 (405)
T COG1252          82 DIDR--DAK--KVTLADLGEISYDYLVVALGSETNYF  114 (405)
T ss_pred             EEcc--cCC--EEEeCCCccccccEEEEecCCcCCcC
Confidence            8876  332  57778878999999999999999875

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.08  E-value=1.6e-05  Score=84.74  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+|+||...
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~---V~lveK~~~   46 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLK---TACITKVFP   46 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence            47999999999999999999998876   899999753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.08  E-value=1.2e-05  Score=89.55  Aligned_cols=93  Identities=23%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++|+|||+|+.|+.+|..|++.|.+||++++.+.+..       . -++.++.+...+.+++.||+|++++.+..   
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~---  381 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK---  381 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence            479999999999999999999999999999998764321       1 13567777777888999999998875421   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCC-CC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN  263 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~-p~  263 (479)
                             .+.+.+.....+|.|++|+|.. |.
T Consensus       382 -------dit~~~l~~~~yDAV~LAtGA~~pr  406 (944)
T PRK12779        382 -------TATLEDLKAAGFWKIFVGTGAGLPT  406 (944)
T ss_pred             -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence                   2445555556799999999984 54

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.07  E-value=1e-05  Score=83.73  Aligned_cols=90  Identities=23%  Similarity=0.292  Sum_probs=70.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+++|..|++.|.+|+++++.+.+.       +. ..+.++.+...+.+++.||+++.++.+..   
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  215 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR---  215 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence            46899999999999999999999999999999887642       11 13567777778888999999999886521   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                             .+.+.+. .+.+|.|++|+|..
T Consensus       216 -------~v~~~~~-~~~~d~vvlAtGa~  236 (457)
T PRK11749        216 -------DITLDEL-RAGYDAVFIGTGAG  236 (457)
T ss_pred             -------ccCHHHH-HhhCCEEEEccCCC
Confidence                   1222222 36799999999985

>PRK10262 thioredoxin reductase; Provisional

Probab=98.07  E-value=0.00011  Score=72.36  Aligned_cols=101  Identities=11%  Similarity=0.159  Sum_probs=71.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC---cc--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ..++++|||+|+.|+.+|..+.++|.++++++...   .+        ++.    ...+++.+.+.+.....+++++.+ 
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   83 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   83 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence            46889999999999999999999999998886431   10        011    123456777777777888887776 


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .+..++. .++. ..+...+ ..+.+|.||+|+|..|+..
T Consensus        84 ~v~~v~~-~~~~-~~v~~~~-~~~~~d~vilAtG~~~~~~  120 (321)
T PRK10262         84 HINKVDL-QNRP-FRLTGDS-GEYTCDALIIATGASARYL  120 (321)
T ss_pred             EEEEEEe-cCCe-EEEEecC-CEEEECEEEECCCCCCCCC
Confidence            4667765 2332 2343333 4789999999999988643

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.06  E-value=5.3e-05  Score=73.22  Aligned_cols=98  Identities=18%  Similarity=0.268  Sum_probs=73.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------------------------c----
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------------R----  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~----  200 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+....                                       .    
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            489999999999999999999999999998753210                                       0    


Q ss_pred             -----cC-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCCCCC
Q 011700          201 -----LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       201 -----~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~~p~  263 (479)
                           .+ ..++.+.+.+.+++.|++++.++++++++.++ +.+ .+.+. ++.++.+|.||.|.|....
T Consensus        82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~a~~vv~a~G~~s~  149 (295)
T TIGR02032        82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRV-VVIVRGGEGTVTAKIVIGADGSRSI  149 (295)
T ss_pred             CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEE-EEEEcCccEEEEeCEEEECCCcchH
Confidence                 01 13455667777888999999999999987633 333 34334 3468999999999997743

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.06  E-value=2.2e-05  Score=86.44  Aligned_cols=92  Identities=28%  Similarity=0.287  Sum_probs=69.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       |. .++.+..+.-.+.+++.||++++++.+ .+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l  616 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV  616 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence            46899999999999999999999999999999876532       11 124455555567788899999999866 2221


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                                 .+.+...+|.|++|||.++..
T Consensus       617 -----------e~L~~~gYDaVILATGA~~~~  637 (1019)
T PRK09853        617 -----------EQLKNEGYDYVVVAIGADKNG  637 (1019)
T ss_pred             -----------hhheeccCCEEEECcCCCCCC
Confidence                       222345689999999987643

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.06  E-value=2e-05  Score=81.64  Aligned_cols=98  Identities=18%  Similarity=0.301  Sum_probs=73.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||+|+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++.
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~l~~~L~~~  231 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVL-------------------PGED----ADAAEVLEEVFARR  231 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCC-------------------CCCC----HHHHHHHHHHHHHC
Confidence            5799999999999999999998876   99999875310                   0000    00112345677889


Q ss_pred             CcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      ||+++.++++.+++.++.  .+.+.+++++.+|.+++|+|.+|...
T Consensus       232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~  277 (466)
T PRK07845        232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA  277 (466)
T ss_pred             CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence            999999999998864433  34556788899999999999998754

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.05  E-value=4.2e-05  Score=75.79  Aligned_cols=95  Identities=24%  Similarity=0.345  Sum_probs=69.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec-Cccc--------------------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM--------------------------------------------  198 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l--------------------------------------------  198 (479)
                      .|+|||+|..|+|.|..+++.|.+|.++... +.+.                                            
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            3899999999999999999999999999432 1110                                            


Q ss_pred             --cc------cCCH-HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          199 --AR------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       199 --~~------~~~~-~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                        +.      ..|. ...+.+.+.+++ .+++++ ..+|+++.. +++++..|.+.+|+++.+|.||+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              00      1222 345556666766 689987 457999987 678999999999999999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.04  E-value=2.1e-05  Score=79.97  Aligned_cols=34  Identities=38%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+|+|||||++|+++|..|++.|++   |+|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence            6899999999999999999999987   999998864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.04  E-value=1.6e-05  Score=80.86  Aligned_cols=97  Identities=29%  Similarity=0.355  Sum_probs=76.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||+|+.|+.+|..|+++|++   |+++|..+...-.       ...       +        .....+.+.++++
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~--------~~~~~~~~~l~~~  191 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------P--------EVAEELAELLEKY  191 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------H--------HHHHHHHHHHHHC
Confidence            6899999999999999999999987   8999998642100       000       1        1124566778899


Q ss_pred             CcEEEeCceEEEEECCCcE-----EEeCCCcEEEeceEEeecCCCcc
Q 011700           85 GIELVLGTRVKSADVRRKT-----LVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~-----v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                      ||+++.++.+..++...+.     +...++..+++|.+++++|.+|.
T Consensus       192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN  238 (415)
T ss_pred             CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence            9999999999999987653     45667788999999999999984

>PLN02507 glutathione reductase

Probab=98.04  E-value=2.4e-05  Score=81.56  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=73.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..+++.|.+   |+|+++.+.. .                  +.+.    .+......+.+++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~-l------------------~~~d----~~~~~~l~~~l~~  256 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELP-L------------------RGFD----DEMRAVVARNLEG  256 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCc-C------------------cccC----HHHHHHHHHHHHh
Confidence            35899999999999999999998876   9999887521 0                  0000    0111234556788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.|.+++.++.  .+.+.+++++++|.+++|+|.+|...
T Consensus       257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  303 (499)
T PLN02507        257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK  303 (499)
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence            9999999999999875433  45556778899999999999998753

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.03  E-value=0.00026  Score=63.42  Aligned_cols=167  Identities=18%  Similarity=0.209  Sum_probs=102.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cC-------------------------------C
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LF-------------------------------T  203 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~-------------------------------~  203 (479)
                      ....|+|||+|++|+-+|..|++.|.+|.+++++-.+-..      .|                               +
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds  108 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS  108 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecH
Confidence            4568999999999999999999999999999987432111      00                               1


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCChh-hh-hcc
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ  270 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~~-l~-~~~  270 (479)
                      .+....+....-+.|.+++..+.++.+...++.++..+..+           |--.++++.|+-+||.....- ++ +..
T Consensus       109 ~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~  188 (262)
T COG1635         109 AEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI  188 (262)
T ss_pred             HHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence            22333333344467899999999998876444356666553           234789999999999877653 22 111


Q ss_pred             ----ccc-ccCcEE--------EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          271 ----LTL-EKGGIK--------VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       271 ----~~~-~~g~i~--------Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                          ... ..+..+        |+... --+|++|++|=.+..-   +|.++.=+...-=...|+.||+.++..
T Consensus       189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T~-eV~pgL~vaGMa~~av---~G~pRMGPiFGgMllSGkkaAe~i~e~  258 (262)
T COG1635         189 PELGIEVPGEKSMWAERGEDLVVENTG-EVYPGLYVAGMAVNAV---HGLPRMGPIFGGMLLSGKKAAEEILEK  258 (262)
T ss_pred             cccccccCCCcchhhhHHHHHHHhccc-cccCCeEeehhhHHhh---cCCcccCchhhhhhhchHHHHHHHHHH
Confidence                111 111122        22222 2489999999776532   122222122222245677777776543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.03  E-value=2.3e-05  Score=81.26  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..+++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il-------------------~~~d----~~~~~~l~~~l~~  227 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC-------------------PGTD----TETAKTLQKALTK  227 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC-------------------CCCC----HHHHHHHHHHHHh
Confidence            46899999999999999999998876   99999875310                   1000    0011334566778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeC-----CCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTA-----TGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~-----~g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.++..++..  +.+.     +++++++|.|++|+|.+|..
T Consensus       228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~  278 (466)
T PRK06115        228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT  278 (466)
T ss_pred             cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence            89999999999999764332  3222     23579999999999998864

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.02  E-value=2.3e-05  Score=83.46  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+|||+...
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~vleK~~~   46 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLS---VAVLSKVFP   46 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            47999999999999999999998876   999999753

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.02  E-value=4.4e-05  Score=77.95  Aligned_cols=33  Identities=27%  Similarity=0.488  Sum_probs=30.1

Q ss_pred             eEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      +|+|||||++||++|..|++.| .+   |+|+|+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence            7999999999999999999987 46   999999865

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.02  E-value=2.5e-05  Score=81.60  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+..|..|+++|.+   |+++++...  ..  .+             +       ........+.+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~--l~--~~-------------d-------~~~~~~l~~~l~~~  235 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIP--LR--GF-------------D-------RQCSEKVVEYMKEQ  235 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcc--cc--cC-------------C-------HHHHHHHHHHHHHc
Confidence            5899999999999999999998876   899976421  10  00             0       00113455677889


Q ss_pred             CcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      ||+++.++.+..+...+  ..+.+.+++++.+|.|++|+|.+|...
T Consensus       236 GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~  281 (499)
T PTZ00052        236 GTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK  281 (499)
T ss_pred             CCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence            99999998888776433  245566788899999999999998653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.02  E-value=2.3e-05  Score=83.73  Aligned_cols=35  Identities=31%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+|+||.+.
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~---V~lveK~~~   63 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYK---TACISKLFP   63 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEeccCC
Confidence            57999999999999999999998876   999999865

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.01  E-value=0.00014  Score=75.39  Aligned_cols=65  Identities=15%  Similarity=0.250  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC--CC--cEEEEEeCCC---cEEeccEEEEecCCCCChhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NG--KVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~g--~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      ..-+.+.+.+.|+++|.+++++++|++|+.++  ++  +++.+.+.+|   +++++|.||+|++..--..++
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL  289 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC
Confidence            44456777888889999999999999998743  23  2666666544   468999999998854333343

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=98.01  E-value=6e-05  Score=79.23  Aligned_cols=60  Identities=13%  Similarity=0.192  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC--CC--cEEEEEe---CCCcEEeccEEEEecCCC
Q 011700          202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NG--KVVAVNL---RDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~g--~v~~v~~---~~g~~i~~D~Vi~a~G~~  261 (479)
                      +...+.+.+.+.++++|.+|++++.|.+|+.+.  ++  +++.+.+   .+++.+++|.||++++..
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            455688889999999999999999999998742  33  3677777   344578999999999854

>PRK13748 putative mercuric reductase; Provisional

Probab=98.00  E-value=2.3e-05  Score=83.26  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++....+                    .+.    ........+.+++
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~--------------------~~d----~~~~~~l~~~l~~  322 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFF--------------------RED----PAIGEAVTAAFRA  322 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCcccc--------------------ccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99998753110                    000    0011334567788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.++..+.+ .++.++.+|.+++|+|.+|...
T Consensus       323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~  368 (561)
T PRK13748        323 EGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTR  368 (561)
T ss_pred             CCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCC
Confidence            99999999999988765443332 2234699999999999998753

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.00  E-value=2.4e-05  Score=81.65  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |||+|||||+||+.||..+++.|.+   |+|+++..
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence            6999999999999999999999887   89999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.99  E-value=3.2e-05  Score=82.70  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||+++++.|.+   |+||||...
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~---VilveK~~~   84 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFN---TACITKLFP   84 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCc---EEEEEcCCC
Confidence            47999999999999999999998887   899999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.98  E-value=3.5e-05  Score=79.40  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++.+...                   |.+.    ........+.+++
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  211 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL-------------------PRED----RDIADNIATILRD  211 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC-------------------CCcC----HHHHHHHHHHHHh
Confidence            35899999999999999999998876   99999875310                   0000    0011234566788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.+.+++.++..+.+. ++.++.+|.+++|+|.+|..
T Consensus       212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPAT  256 (441)
T ss_pred             CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCC
Confidence            999999999999998665444332 23368999999999999865

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.97  E-value=3.2e-05  Score=80.29  Aligned_cols=98  Identities=16%  Similarity=0.228  Sum_probs=71.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      ..+++|||||+.|+..|..+.+.   |.+   |+|+++.+...                   +.+.    ........+.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il-------------------~~~d----~~~~~~l~~~  240 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMIL-------------------RGFD----STLRKELTKQ  240 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCccc-------------------cccC----HHHHHHHHHH
Confidence            36899999999999999876654   554   99999875310                   0000    0111344566


Q ss_pred             HHHcCcEEEeCceEEEEECC-C--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           81 YNEHGIELVLGTRVKSADVR-R--KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~-~--~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      +++.|++++.++.+.+++.+ +  ..+.+.+++++++|.+++|+|.+|..
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~  290 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT  290 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence            78899999999999988753 2  34566677789999999999998864

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.97  E-value=3.8e-05  Score=79.27  Aligned_cols=97  Identities=23%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |++|++.+...                   +.+.    .+....+.+. .+
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll-------------------~~~d----~~~~~~l~~~-~~  221 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL-------------------RHLD----EDISDRFTEI-AK  221 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc-------------------cccC----HHHHHHHHHH-Hh
Confidence            36899999999999999999998876   99999875310                   0000    0000112222 34


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .+++++.++.+.+++.++.  .+.+.+++++.+|.+++|+|.+|..
T Consensus       222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~  267 (452)
T TIGR03452       222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG  267 (452)
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence            6899999999999986543  3445567789999999999999865

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.96  E-value=2.3e-05  Score=72.04  Aligned_cols=34  Identities=24%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+++|||+|+||++||..|+..|.+   |+|+||+.-
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G   35 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG   35 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence            4799999999999999999999987   999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=97.96  E-value=3.1e-05  Score=80.53  Aligned_cols=96  Identities=17%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||+|+.|+..|..|++.|.+   |+++++....+                    .+.    ........+.+++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~L~~~  241 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLF--------------------RED----PLLGETLTACFEKE  241 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCC--------------------cch----HHHHHHHHHHHHhC
Confidence            6899999999999999999998876   89997642110                    000    00113345667889


Q ss_pred             CcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRKTL--VTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      |++++.++.+..++.++..+  ...+ .++.+|.+|+|+|..|...
T Consensus       242 GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~  286 (479)
T PRK14727        242 GIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH  286 (479)
T ss_pred             CCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence            99999999998887544433  3333 4689999999999998653

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.96  E-value=3.4e-05  Score=80.16  Aligned_cols=96  Identities=14%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+.+|..|+++|.+   |+++++....+                    .+.    ........+.+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~--------------------~~d----~~~~~~l~~~L~~~  233 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLR--------------------GFD----QDCANKVGEHMEEH  233 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCc---EEEEEeccccc--------------------ccC----HHHHHHHHHHHHHc
Confidence            5799999999999999999998876   89997642110                    000    00112345677889


Q ss_pred             CcEEEeCceEEEEECCCc--EEEeCCC---cEEEeceEEeecCCCccc
Q 011700           85 GIELVLGTRVKSADVRRK--TLVTATG---ETISYKILIIATGARALK  127 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~--~v~~~~g---~~~~~d~lviAtG~~~~~  127 (479)
                      ||+++.++.+..++....  .+.+.++   +++.+|.+++|+|.+|..
T Consensus       234 gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~  281 (484)
T TIGR01438       234 GVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT  281 (484)
T ss_pred             CCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence            999999988877764332  3444444   479999999999998865

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.96  E-value=4.2e-05  Score=77.27  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=31.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++|||||++||+||++|.+++ ++.+|+|+|+++.
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~-p~~~i~lfE~~~r   36 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAG-PDVEVTLFEADDR   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence            7999999999999999999976 3456999999865

>PLN02661 Putative thiazole synthesis

Probab=97.95  E-value=0.00047  Score=67.42  Aligned_cols=167  Identities=15%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCcccc----------c----------------cCC----------
Q 011700          161 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------R----------------LFT----------  203 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~----------~----------------~~~----------  203 (479)
                      ..-.++|||+|..|+-+|..|++. |.+|+++++...+-.          .                .++          
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            456899999999999999999976 899999998643211          0                001          


Q ss_pred             -HHHHHHHH-HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC------C--C------cEEeccEEEEecCCCCChh--
Q 011700          204 -PKIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------D--G------NRLPTDMVVVGIGIRPNTS--  265 (479)
Q Consensus       204 -~~~~~~~~-~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~i~~D~Vi~a~G~~p~~~--  265 (479)
                       .++...+. +.+++.||+++.++.+.++.. +++++..+...      +  +      ..+.++.||+|||-.+...  
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~  249 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT  249 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence             11112233 344457899999999999887 46677676631      1  1      2689999999999665321  


Q ss_pred             hhh----ccccc---ccCcEEEcC--cc---cC--CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          266 LFE----GQLTL---EKGGIKVTG--RL---QS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       266 l~~----~~~~~---~~g~i~Vd~--~l---~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ..+    .++..   ......++.  .+   .|  -+|++|++|=.+.-.   .|.++.=+....=...|+.||+.|+..
T Consensus       250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence            111    01100   011122221  10   22  489999999776532   122222122322245677777777644

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.94  E-value=0.0003  Score=72.96  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE---eCCC--cEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDG--NRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~---~~~g--~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+.+.+.+.++++|++++.+++|++++.++++.+ .+.   ..++  .++.+|.||+|+|....
T Consensus       177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL  241 (483)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH
Confidence            456778888888889999999999999987444432 232   2334  36899999999997643

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=4.2e-05  Score=81.36  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||.++++.|.+   |+|+||...
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~---V~lleK~~~   41 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQS---CALLSKVFP   41 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCc---EEEEEccCC
Confidence            47999999999999999999998887   899999854

>PRK06834 hypothetical protein; Provisional

Probab=97.94  E-value=0.00012  Score=76.29  Aligned_cols=101  Identities=28%  Similarity=0.415  Sum_probs=76.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---ccc--------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---ARL--------------------------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---~~~--------------------------------------  201 (479)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+...   ++.                                      
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999763210   000                                      


Q ss_pred             ---C-----------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          202 ---F-----------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       202 ---~-----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                         +           -..+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.|..+...
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~vR  159 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLVR  159 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCcH
Confidence               0           0123344556667789999999999999874433 3 46677888999999999999887653

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.93  E-value=3.2e-05  Score=79.56  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||||||||+||..+|..|++.+.+..+|+|||++..
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            799999999999999999998744467999999976

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.92  E-value=0.00012  Score=77.53  Aligned_cols=99  Identities=18%  Similarity=0.320  Sum_probs=74.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc--------c---cc---cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------M---AR---LFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------l---~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      -.++|||||+.|+.+|..+++.|.+|+++++.+.-        .   +.   ...+++.+.+.+.+++.|++++ +..+.
T Consensus         5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~   83 (555)
T TIGR03143         5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL   83 (555)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence            46999999999999999999999999999975310        0   10   0124667777788888999986 56788


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .++.  ++....+.+.++ ++.+|.+|+|+|.+|...
T Consensus        84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~  117 (555)
T TIGR03143        84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL  117 (555)
T ss_pred             EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence            8876  233334666555 689999999999988754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07045 putative monooxygenase; Reviewed

Probab=97.92  E-value=0.00014  Score=73.68  Aligned_cols=103  Identities=22%  Similarity=0.262  Sum_probs=77.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------c---------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R---------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~---------------------------------  200 (479)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..         .                                 
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999987643210         0                                 


Q ss_pred             ----c------CC-------HHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          201 ----L------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       201 ----~------~~-------~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                          .      ..       .++.+.+.+.+. ..|++++.+++++.++.++++.+..+.+.+|+++.+|+||-|.|...
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence                0      00       122333444443 35799999999999988666665678888999999999999999876


Q ss_pred             Chh
Q 011700          263 NTS  265 (479)
Q Consensus       263 ~~~  265 (479)
                      ...
T Consensus       166 ~vR  168 (388)
T PRK07045        166 MIR  168 (388)
T ss_pred             HHH
Confidence            543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.91  E-value=2.6e-05  Score=80.41  Aligned_cols=93  Identities=23%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+++|..|++.|.+|+++++.+.+.       +. .+++++.+...+.+++.||+++.++.+..   
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~---  208 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK---  208 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence            36789999999999999999999999999999876541       11 14667777777788899999999875411   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  264 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~  264 (479)
                             .+.+.+. ...+|.|++|+|. .|..
T Consensus       209 -------~v~~~~~-~~~yd~viiAtGa~~p~~  233 (449)
T TIGR01316       209 -------TATLEEL-FSQYDAVFIGTGAGLPKL  233 (449)
T ss_pred             -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence                   1222222 3468999999997 5543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK08244 hypothetical protein; Provisional

Probab=97.91  E-value=0.00013  Score=76.31  Aligned_cols=103  Identities=22%  Similarity=0.330  Sum_probs=74.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--c----------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R----------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~----------------------------------------  200 (479)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+....  +                                        
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            3699999999999999999999999999997632100  0                                        


Q ss_pred             c-------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChh
Q 011700          201 L-------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       201 ~-------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .             ++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|.++...
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR  162 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVR  162 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHH
Confidence            0             00 1344556666777899999999999998744442222333355 4799999999999887543

>PTZ00058 glutathione reductase; Provisional

Probab=97.90  E-value=5.7e-05  Score=79.52  Aligned_cols=98  Identities=14%  Similarity=0.118  Sum_probs=71.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..+++.|.+   |+++++.+..           +        +.+.    ........+.+++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~i-----------l--------~~~d----~~i~~~l~~~L~~  290 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRL-----------L--------RKFD----ETIINELENDMKK  290 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEecccc-----------c--------ccCC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   9999987521           0        0000    0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCc---EEEeCC-CcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK---TLVTAT-GETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~---~v~~~~-g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.+..   .+...+ ++++.+|.|++|+|.+|..
T Consensus       291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~  338 (561)
T PTZ00058        291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT  338 (561)
T ss_pred             CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCc
Confidence            8999999999999875432   233333 3579999999999988764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.90  E-value=5.2e-05  Score=78.59  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|+++|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~d----~~~~~~~~~~l~~  222 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL-------------------PLED----PEVSKQAQKILSK  222 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC-------------------cchh----HHHHHHHHHHHhh
Confidence            46899999999999999999998876   99999875310                   0000    0111234556677


Q ss_pred             cCcEEEeCceEEEEECCCc-EEEe----CCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK-TLVT----ATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~-~v~~----~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      . ++++.++++.+++.++. .+.+    .+++++++|.+++|+|.+|...
T Consensus       223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~  271 (460)
T PRK06292        223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD  271 (460)
T ss_pred             c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence            7 99999999999976543 3432    2335799999999999998764

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.90  E-value=0.00015  Score=73.39  Aligned_cols=101  Identities=23%  Similarity=0.375  Sum_probs=76.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------c-cc---------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------M-AR---------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------l-~~---------------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..             + +.                           
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV   85 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence            467999999999999999999999999999975311             0 00                           


Q ss_pred             ---------cC---------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          201 ---------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       201 ---------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                               .+               ...+.+.+.+.+++.|++++.++++++++.++ +.+ .+++.+|+++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA-DRV-RLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC-CeE-EEEECCCCEEEeCEEEE
Confidence                     00               02234445566777899999999999998733 333 47778888999999999


Q ss_pred             ecCCCCCh
Q 011700          257 GIGIRPNT  264 (479)
Q Consensus       257 a~G~~p~~  264 (479)
                      |.|..+..
T Consensus       164 AdG~~S~v  171 (392)
T PRK08773        164 ADGAASTL  171 (392)
T ss_pred             ecCCCchH
Confidence            99998754

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.89  E-value=4e-05  Score=81.99  Aligned_cols=36  Identities=25%  Similarity=0.497  Sum_probs=33.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++||||||||..|.++|+.|+++|++   |+|||+++.
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~---V~LvE~~d~  105 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLR---VGLVEREDF  105 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecccc
Confidence            358999999999999999999999997   999999864

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.89  E-value=0.0005  Score=71.15  Aligned_cols=60  Identities=13%  Similarity=0.141  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEE---eCCCc--EEeccEEEEecCCCCCh
Q 011700          204 PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       204 ~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~Vi~a~G~~p~~  264 (479)
                      ..+.+.+.+.+. ..|++++++++|..++..+++.. .+.   ..+++  ++.+|.||+|.|.....
T Consensus       184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~  249 (497)
T PRK13339        184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP  249 (497)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence            455666767675 45999999999999987424432 233   33442  68999999999987643

>PLN02463 lycopene beta cyclase

Probab=97.88  E-value=0.00014  Score=74.56  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=73.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-cccC---------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF---------------------------------------  202 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~~~---------------------------------------  202 (479)
                      -.++|||+|+.|+-+|..|++.|.+|.++++.+... +...                                       
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            379999999999999999999999999998864211 1000                                       


Q ss_pred             ----CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                          ..++.+.+.+.+.+.|++++ ..+|++++.. ++. ..|.+++|+++.+|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCcC
Confidence                11233455556667899997 4678999873 333 4678889989999999999998764

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.88  E-value=0.00014  Score=73.69  Aligned_cols=101  Identities=22%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------------c------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~------  201 (479)
                      +.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                  .      
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   83 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA   83 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence            578999999999999999999999999999987432100                                  0      


Q ss_pred             -------CC----------------HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700          202 -------FT----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  257 (479)
Q Consensus       202 -------~~----------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a  257 (479)
                             ++                .++.+.+.+.+.+. +++++.++++++++.+ ++.+ .+.+.+|+++.+|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vV~A  161 (396)
T PRK08163         84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGV-TVFDQQGNRWTGDALIGC  161 (396)
T ss_pred             CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCce-EEEEcCCCEEecCEEEEC
Confidence                   00                11223344444444 4999999999999863 3333 477788889999999999


Q ss_pred             cCCCCCh
Q 011700          258 IGIRPNT  264 (479)
Q Consensus       258 ~G~~p~~  264 (479)
                      .|..+..
T Consensus       162 dG~~S~~  168 (396)
T PRK08163        162 DGVKSVV  168 (396)
T ss_pred             CCcChHH
Confidence            9987655

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.88  E-value=3.9e-05  Score=79.39  Aligned_cols=93  Identities=22%  Similarity=0.315  Sum_probs=70.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|++++.++.+..-  
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--  217 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--  217 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence            36889999999999999999999999999999876541       11 146667677778889999999999865221  


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                              +.+.+ ....+|.|++|+|..+..
T Consensus       218 --------~~~~~-~~~~~D~vilAtGa~~~~  240 (467)
T TIGR01318       218 --------ISLDD-LLEDYDAVFLGVGTYRSM  240 (467)
T ss_pred             --------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence                    11111 124699999999988753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.87  E-value=6e-05  Score=81.06  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||||||+|.||++||+++++.|.+   |+|+|+.+.
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~   39 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA   39 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence            48999999999999999999998887   899998764

>PRK12831 putative oxidoreductase; Provisional

Probab=97.86  E-value=3.4e-05  Score=79.70  Aligned_cols=94  Identities=24%  Similarity=0.305  Sum_probs=68.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCH-HHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTP-KIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~-~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++. ++.+...+.+++.||++++++.+..  
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~--  216 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK--  216 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence            46899999999999999999999999999999865431       11 0222 3666666788889999999985421  


Q ss_pred             EcCCCcEEEEEeCCC-cEEeccEEEEecCC-CCCh
Q 011700          232 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT  264 (479)
Q Consensus       232 ~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~-~p~~  264 (479)
                              .+.+.+. +.+.+|.|++|+|. .|..
T Consensus       217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~  243 (464)
T PRK12831        217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF  243 (464)
T ss_pred             --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence                    1222232 24569999999997 4643

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.85  E-value=1.9e-05  Score=58.28  Aligned_cols=30  Identities=23%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             EECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            9 IVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         9 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |||||++||++|..|++.|.+   |+|+|+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSE---EEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCc---EEEEecCcc
Confidence            899999999999999998775   999999975

...

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.84  E-value=0.00022  Score=72.11  Aligned_cols=100  Identities=21%  Similarity=0.304  Sum_probs=77.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC-ccccc-----------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCMAR-----------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~l~~-----------------------------------------  200 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+.                                         
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~   82 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR   82 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence            579999999999999999999999999999861 11110                                         


Q ss_pred             ------------------cCCHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeC-CCcEEeccEEEEecCC
Q 011700          201 ------------------LFTPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGI  260 (479)
Q Consensus       201 ------------------~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~Vi~a~G~  260 (479)
                                        .--.++.+.+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ ||+++.||+||-|=|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654          83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCCC
Confidence                              001245566677777666 9999999999999843 4444 7777 9999999999999997


Q ss_pred             CCCh
Q 011700          261 RPNT  264 (479)
Q Consensus       261 ~p~~  264 (479)
                      ....
T Consensus       161 ~S~v  164 (387)
T COG0654         161 NSAV  164 (387)
T ss_pred             chHH
Confidence            6544

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.82  E-value=4.9e-05  Score=79.04  Aligned_cols=90  Identities=24%  Similarity=0.353  Sum_probs=68.5

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+++|..|++.|.+|+++++.+++.       +. .+++++.....+.+++.||+++.++.+.. + 
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~-  219 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-D-  219 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-c-
Confidence            34799999999999999999999999999999887642       11 13566766667788999999999987631 1 


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                              +. .+.....+|.|++|+|..
T Consensus       220 --------~~-~~~~~~~~d~VilAtGa~  239 (485)
T TIGR01317       220 --------IS-ADELKEQFDAVVLAGGAT  239 (485)
T ss_pred             --------cC-HHHHHhhCCEEEEccCCC
Confidence                    00 011235789999999987

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.81  E-value=5.9e-05  Score=77.71  Aligned_cols=92  Identities=18%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhh--CCCeEEEEeecCcccc--------cc-CCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMA--------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~--------~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      .+++|+|||+|+.|+.+|..|.+  .|.+|+++++.+.+..        .. ....+.+.+.+.++..+|+++.+..+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~  104 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR  104 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence            46899999999999999999987  7999999999876531        10 1123344556667778999998765421


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                                .+.+.+- ...+|.||+|+|..+.
T Consensus       105 ----------dvtl~~L-~~~yDaVIlAtGa~~~  127 (491)
T PLN02852        105 ----------DVSLSEL-RDLYHVVVLAYGAESD  127 (491)
T ss_pred             ----------cccHHHH-hhhCCEEEEecCCCCC
Confidence                      1233332 2468999999998764

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.79  E-value=0.00028  Score=71.85  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=74.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----------cccc-------------------------c------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR-------------------------L------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----------~l~~-------------------------~------  201 (479)
                      ..|+|||+|+.|+-+|..|++.|.+|+++++.+.          ..++                         .      
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~   82 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM   82 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence            3699999999999999999999999999997641          0000                         0      


Q ss_pred             ------------CC---------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEE
Q 011700          202 ------------FT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  254 (479)
Q Consensus       202 ------------~~---------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~V  254 (479)
                                  ++               ..+.+.+.+.+++.|++++.++++.+++.++++  ..+.+.+|+++.+|.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v  160 (405)
T PRK05714         83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV  160 (405)
T ss_pred             EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence                        00               012233445566679999999999999874443  3477888889999999


Q ss_pred             EEecCCCCCh
Q 011700          255 VVGIGIRPNT  264 (479)
Q Consensus       255 i~a~G~~p~~  264 (479)
                      |.|.|.....
T Consensus       161 VgAdG~~S~v  170 (405)
T PRK05714        161 VAADGANSAV  170 (405)
T ss_pred             EEecCCCchh
Confidence            9999987654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.78  E-value=4.6e-05  Score=77.69  Aligned_cols=123  Identities=20%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCe
Q 011700          108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN  187 (479)
Q Consensus       108 ~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~  187 (479)
                      ++..+.++.|..+.|........  +++. .+..                  ..+++|.|||+|+.|+.+|..|++.|+.
T Consensus        90 ~~~~v~i~~le~~i~d~~~~~g~--i~~~-~~~~------------------~tg~~VaviGaGPAGl~~a~~L~~~G~~  148 (457)
T COG0493          90 EELPVNIGALERAIGDKADREGW--IPGE-LPGS------------------RTGKKVAVIGAGPAGLAAADDLSRAGHD  148 (457)
T ss_pred             CCCchhhhhHHHHHhhHHHHhCC--CCCC-CCCC------------------CCCCEEEEECCCchHhhhHHHHHhCCCe
Confidence            44567888888888866432110  1221 1111                  1368999999999999999999999999


Q ss_pred             EEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          188 VTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       188 Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      ||++++.+.+-..        .++.++.+...+.|++.|++|+.++.+-.     +     +++++ ..-++|.|++++|
T Consensus       149 Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~-----~-----it~~~-L~~e~Dav~l~~G  217 (457)
T COG0493         149 VTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR-----D-----ITLEE-LLKEYDAVFLATG  217 (457)
T ss_pred             EEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC-----c-----CCHHH-HHHhhCEEEEecc
Confidence            9999988654221        14668888889999999999999986531     0     11111 1234599999999


Q ss_pred             CCC
Q 011700          260 IRP  262 (479)
Q Consensus       260 ~~p  262 (479)
                      ..-
T Consensus       218 ~~~  220 (457)
T COG0493         218 AGK  220 (457)
T ss_pred             ccC
Confidence            543

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.78  E-value=0.00033  Score=68.28  Aligned_cols=59  Identities=19%  Similarity=0.294  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---------------CcEEeccEEEEecCCCCCh
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---------------GNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---------------g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +..++-+..++.||+++.+...+++.-++||.+..+.++|               |-++.+..-++|-|-+-..
T Consensus       185 ~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L  258 (621)
T KOG2415|consen  185 LVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL  258 (621)
T ss_pred             HHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence            4455666778889999999999999888899888888764               2357778888888866543

>PRK07208 hypothetical protein; Provisional

Probab=97.78  E-value=2.7e-05  Score=81.16  Aligned_cols=58  Identities=21%  Similarity=0.349  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe--CCCc--EEeccEEEEecCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g~--~i~~D~Vi~a~G~~  261 (479)
                      ..+.+.+.+.+++.|++++++++|++|+.++++.+..+..  .+|+  ++.+|.||+++...
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            4677888888999999999999999999855554444443  2453  68899999997743

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=97.78  E-value=8.2e-05  Score=73.96  Aligned_cols=101  Identities=19%  Similarity=0.310  Sum_probs=78.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      ..+|++|+|..|+.+|..|.....+   |++|++++.. ..      .++               +......+..+|++.
T Consensus       214 ~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~-~~------~lf---------------~~~i~~~~~~y~e~k  268 (478)
T KOG1336|consen  214 GKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWL-LP------RLF---------------GPSIGQFYEDYYENK  268 (478)
T ss_pred             ceEEEECchHHHHHHHHHHHhcCce---EEEEccCccc-hh------hhh---------------hHHHHHHHHHHHHhc
Confidence            5699999999999999999986555   9999998631 10      011               112234567889999


Q ss_pred             CcEEEeCceEEEEECCC----cEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700           85 GIELVLGTRVKSADVRR----KTLVTATGETISYKILIIATGARALKLEE  130 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~----~~v~~~~g~~~~~d~lviAtG~~~~~~~~  130 (479)
                      +|+++.++.+.+++...    ..|.+.++.++.+|-||+.+|++|.....
T Consensus       269 gVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~  318 (478)
T KOG1336|consen  269 GVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL  318 (478)
T ss_pred             CeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc
Confidence            99999999888886543    24667899999999999999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.77  E-value=0.00012  Score=75.88  Aligned_cols=97  Identities=13%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+..|..+++.|.+   |+||++.+..           +        |.+.    ........+.+++.
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~i-----------l--------~~~d----~~~~~~~~~~l~~~  228 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQV-----------I--------PAAD----KDIVKVFTKRIKKQ  228 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCC-----------C--------CcCC----HHHHHHHHHHHhhc
Confidence            6899999999999999999999886   9999987531           0        1000    00112234556666


Q ss_pred             CcEEEeCceEEEEECCCcE--EEeCC--C--cEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRKT--LVTAT--G--ETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~--v~~~~--g--~~~~~d~lviAtG~~~~~~  128 (479)
                       ++++.++.+..++..+..  +.+.+  +  +++++|.+|+|+|.+|...
T Consensus       229 -v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~  277 (471)
T PRK06467        229 -FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK  277 (471)
T ss_pred             -eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence             999999999988754333  33332  2  4699999999999998753

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.77  E-value=0.00044  Score=72.40  Aligned_cols=137  Identities=24%  Similarity=0.254  Sum_probs=84.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------cC----------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LF----------  202 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~~----------  202 (479)
                      |+|+|||+|++|+-.+..|.+.|.+++++++++.+-.-                              .+          
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~   81 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP   81 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence            78999999999999999999999999999987532110                              00          


Q ss_pred             -CHHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCCC---cEEEEEeCC-Cc--EEeccEEEEecCC--CCChhhh-hcc
Q 011700          203 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNG---KVVAVNLRD-GN--RLPTDMVVVGIGI--RPNTSLF-EGQ  270 (479)
Q Consensus       203 -~~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g---~v~~v~~~~-g~--~i~~D~Vi~a~G~--~p~~~l~-~~~  270 (479)
                       .+++.++++++.+..++  .+.++++|.+++..++.   ....|.+.+ |+  +..+|.|++|+|.  .|+.+.. -.+
T Consensus        82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G  161 (531)
T PF00743_consen   82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG  161 (531)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred             CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence             15788888888888776  58899999999875442   123455543 42  4569999999995  3554420 012


Q ss_pred             cccccCcEEEcCcccC----CCCCeEEEeeecc
Q 011700          271 LTLEKGGIKVTGRLQS----SNSSVYAVGDVAA  299 (479)
Q Consensus       271 ~~~~~g~i~Vd~~l~t----~~~~IyA~GD~~~  299 (479)
                      +..=+|.|.=...++.    ..++|-.+|-..+
T Consensus       162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S  194 (531)
T PF00743_consen  162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS  194 (531)
T ss_dssp             GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred             hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence            2221344443333332    3567888886544

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.77  E-value=0.0003  Score=71.47  Aligned_cols=99  Identities=25%  Similarity=0.426  Sum_probs=74.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcccc----c-------------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA----R-------------------------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~----~-------------------------------------  200 (479)
                      +|+|||+|+.|+-+|..|++.|  .+|+++++.+...+    +                                     
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  99999997532100    0                                     


Q ss_pred             ----------cC---------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700          201 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  255 (479)
Q Consensus       201 ----------~~---------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi  255 (479)
                                .+               ...+.+.+.+.+++.|++++.++++++++.+ ++. ..+.+.+|+++.+|.||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~-v~v~~~~g~~~~ad~vI  160 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR-DEG-VTVTLSDGSVLEARLLV  160 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCE-EEEEECCCCEEEeCEEE
Confidence                      00               0234455666677789999999999999863 333 35777888899999999


Q ss_pred             EecCCCCCh
Q 011700          256 VGIGIRPNT  264 (479)
Q Consensus       256 ~a~G~~p~~  264 (479)
                      .|.|..+..
T Consensus       161 ~AdG~~S~v  169 (403)
T PRK07333        161 AADGARSKL  169 (403)
T ss_pred             EcCCCChHH
Confidence            999987654

>PLN02985 squalene monooxygenase

Probab=97.76  E-value=0.00013  Score=76.39  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||||++|+++|..|++.|.+   |+|+|+.+.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~   77 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR   77 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence            58999999999999999999999987   999999753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.76  E-value=0.00012  Score=76.35  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=65.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|+|+|.+|+++|..|.++|.+|+++++.+.        +....+.+.+++.||+++.+..+.            
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------   74 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------   74 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence            468999999999999999999999999999986542        233445667888999998776432            


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                            ....+|.||+++|..|+.+++.
T Consensus        75 ------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 ------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             ------ccCCCCEEEECCCcCCCCHHHH
Confidence                  1245899999999999998653

>PRK06184 hypothetical protein; Provisional

Probab=97.76  E-value=0.00031  Score=73.60  Aligned_cols=100  Identities=16%  Similarity=0.250  Sum_probs=74.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  200 (479)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            46999999999999999999999999999976321100                                          


Q ss_pred             ---------------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEE
Q 011700          201 ---------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  255 (479)
Q Consensus       201 ---------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi  255 (479)
                                           .++ ..+.+.+.+.+++.|++++.++++.+++.++++ + .+.+   .+++++.+|.||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV  161 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV  161 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence                                 000 112345566677789999999999999874444 2 3444   456789999999


Q ss_pred             EecCCCCCh
Q 011700          256 VGIGIRPNT  264 (479)
Q Consensus       256 ~a~G~~p~~  264 (479)
                      .|.|.....
T Consensus       162 gADG~~S~v  170 (502)
T PRK06184        162 GADGGRSFV  170 (502)
T ss_pred             ECCCCchHH
Confidence            999987643

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00037  Score=67.48  Aligned_cols=99  Identities=16%  Similarity=0.290  Sum_probs=73.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCc---------------cccccCCHHHHHHHHHHHHhCCcEEEcCCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH---------------CMARLFTPKIASYYEEYYKSKGVKFVKGTV  226 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~---------------~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~  226 (479)
                      -.++|||+|+.|+-.|-.+.+.+.+ +.+++....               +-.....+++.+.+.++.+..|+++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            4699999999999999999999988 444443211               011123577888888888889999987 56


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          227 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       227 v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+++..++  ...|.+.+++ +.++.||+|+|..+...
T Consensus        83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL  118 (305)
T ss_pred             EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence            777765222  5568888887 99999999999876654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.74  E-value=6.9e-05  Score=76.85  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=45.6

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~~p~  263 (479)
                      |..+.-.......++|-++++.++|+++.. +++ +..|+..|..     ++.++.||.|+|.-..
T Consensus       163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d  226 (532)
T COG0578         163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD  226 (532)
T ss_pred             hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH
Confidence            455666666677889999999999999987 444 7788876532     5889999999996543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.73  E-value=0.00039  Score=71.28  Aligned_cols=98  Identities=20%  Similarity=0.343  Sum_probs=72.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------cc-----cC-----------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR-----LF-----------------  202 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~-----~~-----------------  202 (479)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+.                  +.     .+                 
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA   85 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence            469999999999999999999999999999763211                  00     00                 


Q ss_pred             ---------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          203 ---------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       203 ---------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                                           -.++.+.+.+..++.|++++.+++|++++. +++.+..+. .++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN  163 (428)
T ss_pred             eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence                                 011223455566778999999999999876 355554443 567789999999999974


Q ss_pred             C
Q 011700          262 P  262 (479)
Q Consensus       262 p  262 (479)
                      .
T Consensus       164 s  164 (428)
T PRK10157        164 S  164 (428)
T ss_pred             H
Confidence            3

>PRK07588 hypothetical protein; Provisional

Probab=97.73  E-value=0.00035  Score=70.78  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------c----------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R----------------------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~----------------------------------  200 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+....         .                                  
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~   81 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK   81 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence            689999999999999999999999999987643210         0                                  


Q ss_pred             -cCC-----------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          201 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       201 -~~~-----------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                       .++                 .++.+.+.+.+ ..++++++++++++++.+ ++.+ .+.+++|+++.+|.||-|-|...
T Consensus        82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGV-RVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeE-EEEECCCCEEEeCEEEECCCCCc
Confidence             000                 01122222223 347999999999999874 3333 57888999999999999999876


Q ss_pred             Chh
Q 011700          263 NTS  265 (479)
Q Consensus       263 ~~~  265 (479)
                      .+.
T Consensus       159 ~vR  161 (391)
T PRK07588        159 HVR  161 (391)
T ss_pred             cch
Confidence            653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.73  E-value=8e-05  Score=81.82  Aligned_cols=94  Identities=22%  Similarity=0.283  Sum_probs=69.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-       +. .++.++.+...+.+++.||+|+.++.+..   
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~---  506 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK---  506 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence            46789999999999999999999999999999865321       11 13556666666778899999999875411   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  264 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~  264 (479)
                             .+.+.+.....+|.|++|+|. .|..
T Consensus       507 -------~v~~~~l~~~~ydavvlAtGa~~~~~  532 (752)
T PRK12778        507 -------TITIEELEEEGFKGIFIASGAGLPNF  532 (752)
T ss_pred             -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence                   133334345669999999998 4654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.72  E-value=0.00012  Score=81.03  Aligned_cols=91  Identities=19%  Similarity=0.174  Sum_probs=66.0

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-.       . ..+.+..+...+.+++.||++++++.. .    
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d----  611 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D----  611 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence            57899999999999999999999999999998764311       1 124455555556778889999987421 1    


Q ss_pred             CCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          234 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                             +.+.+.+...+|.|++|+|..+..
T Consensus       612 -------~~ve~l~~~gYDaVIIATGA~~~~  635 (1012)
T TIGR03315       612 -------LTVAELKNQGYKYVILAIGAWKHG  635 (1012)
T ss_pred             -------eEhhhhhcccccEEEECCCCCCCC
Confidence                   112222345689999999987543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.68  E-value=9.8e-05  Score=76.63  Aligned_cols=90  Identities=19%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                      +++++|||+|+.|+.+|..|++.|.+|+++++.+.+...        .++.++.....+.+++.||+++.++.+.. .  
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~--  219 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D--  219 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c--
Confidence            578999999999999999999999999999987654210        13556666666778899999999876531 1  


Q ss_pred             CCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          234 SNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                             +.. +.....+|.|++|+|..+
T Consensus       220 -------~~~-~~~~~~~d~vvlAtGa~~  240 (471)
T PRK12810        220 -------ITA-EELLAEYDAVFLGTGAYK  240 (471)
T ss_pred             -------CCH-HHHHhhCCEEEEecCCCC
Confidence                   000 111347899999999873

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.68  E-value=0.00071  Score=71.74  Aligned_cols=103  Identities=19%  Similarity=0.297  Sum_probs=72.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                         
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            357999999999999999999999999999877421000                                         


Q ss_pred             -----c-------------CC-HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecC
Q 011700          201 -----L-------------FT-PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG  259 (479)
Q Consensus       201 -----~-------------~~-~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G  259 (479)
                           .             +. ..+.+.+.+.+++. ++++++++++++++.++++....+...+++ ++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG  182 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG  182 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence                 0             00 11223344455554 799999999999987544432233334554 699999999999


Q ss_pred             CCCCh
Q 011700          260 IRPNT  264 (479)
Q Consensus       260 ~~p~~  264 (479)
                      .....
T Consensus       183 ~~S~v  187 (547)
T PRK08132        183 ARSPL  187 (547)
T ss_pred             CCcHH
Confidence            88765

>PLN02546 glutathione reductase

Probab=97.67  E-value=0.00019  Score=75.58  Aligned_cols=99  Identities=19%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.+.+   |+++++.+..           +        +.+.    ........+.+++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~i-----------l--------~~~d----~~~~~~l~~~L~~  305 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKV-----------L--------RGFD----EEVRDFVAEQMSL  305 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEecccc-----------c--------cccC----HHHHHHHHHHHHH
Confidence            46899999999999999999988765   9999877421           0        0000    0111234566788


Q ss_pred             cCcEEEeCceEEEEECC-CcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVR-RKT--LVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~-~~~--v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.++... +..  +...+++...+|.+++|+|.+|...
T Consensus       306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence            99999999999888642 232  3334444445899999999998653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.67  E-value=0.00035  Score=69.27  Aligned_cols=102  Identities=25%  Similarity=0.376  Sum_probs=72.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------------------------------------c---
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------L---  201 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------------------~---  201 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                       .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            5899999999999999999999999999987221100                                       0   


Q ss_pred             -------------------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEecc
Q 011700          202 -------------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD  252 (479)
Q Consensus       202 -------------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D  252 (479)
                                               + -.++.+.+.+.+++.|++++.++++..++.+.++....+... +|  +++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad  162 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD  162 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence                                     0 135667777888888999999999999987555433233333 34  368999


Q ss_pred             EEEEecCCCCChh
Q 011700          253 MVVVGIGIRPNTS  265 (479)
Q Consensus       253 ~Vi~a~G~~p~~~  265 (479)
                      +||-|-|....+.
T Consensus       163 lvVgADG~~S~vR  175 (356)
T PF01494_consen  163 LVVGADGAHSKVR  175 (356)
T ss_dssp             EEEE-SGTT-HHH
T ss_pred             eeecccCcccchh
Confidence            9999999887654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05868 hypothetical protein; Validated

Probab=97.67  E-value=0.00032  Score=70.51  Aligned_cols=101  Identities=21%  Similarity=0.187  Sum_probs=72.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  200 (479)
                      ++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                          
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            47999999999999999999999999999976332100                                          


Q ss_pred             --cCC--H---------H---HHHHHHHHHH---hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          201 --LFT--P---------K---IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       201 --~~~--~---------~---~~~~~~~~l~---~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                        ...  .         .   ....+.+.|.   ..|+++++++++++++.+ ++. ..+.+.||+++.+|+||-|-|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~-~~~-v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD-GDS-VRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec-CCe-EEEEECCCCeEEeCEEEECCCCC
Confidence              000  0         0   0112222222   358999999999999863 333 35888999999999999999987


Q ss_pred             CChh
Q 011700          262 PNTS  265 (479)
Q Consensus       262 p~~~  265 (479)
                      ....
T Consensus       160 S~vR  163 (372)
T PRK05868        160 SNVR  163 (372)
T ss_pred             chHH
Confidence            7654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.67  E-value=0.00049  Score=70.21  Aligned_cols=102  Identities=18%  Similarity=0.321  Sum_probs=71.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----cc-------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR-------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----~~-------------------------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+..-    ++                                     
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            3579999999999999999999999999999764210    00                                     


Q ss_pred             -----cC---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCC--C-cEEeccEEEE
Q 011700          201 -----LF---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G-NRLPTDMVVV  256 (479)
Q Consensus       201 -----~~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g-~~i~~D~Vi~  256 (479)
                           .+               ...+.+.+.+.+.+. +|+++.++++++++.++++ + .+.+.+  + .++.+|+||.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvIg  175 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVVA  175 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEEE
Confidence                 00               012233334444443 7999999999999874333 2 355553  2 3699999999


Q ss_pred             ecCCCCChh
Q 011700          257 GIGIRPNTS  265 (479)
Q Consensus       257 a~G~~p~~~  265 (479)
                      |.|......
T Consensus       176 ADG~~S~vR  184 (415)
T PRK07364        176 ADGARSPIR  184 (415)
T ss_pred             eCCCCchhH
Confidence            999877553

>PLN02697 lycopene epsilon cyclase

Probab=97.67  E-value=0.00045  Score=72.08  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-----------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------------  201 (479)
                      -.|+|||+|+.|+.+|..|++.|.+|.++++...+....                                         
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            479999999999999999999999999998642211100                                         


Q ss_pred             CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          202 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       202 ~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ++ ..+.+.+.+.+.+.|+++ .+++|++++.+++ .+..+.+.+|.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence            00 123344555666779998 5678899876333 33334567888999999999999876

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.66  E-value=0.00011  Score=79.23  Aligned_cols=92  Identities=20%  Similarity=0.302  Sum_probs=69.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+..|..|++.|.+|+++++.+.+.        +..++.++.+...+.+++.||++++++.+..   
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  385 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR---  385 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence            36899999999999999999999999999999887532        1124667777667888999999999986531   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                        +     +.+.+ ....+|.|++|+|..+.
T Consensus       386 --~-----~~~~~-l~~~~DaV~latGa~~~  408 (639)
T PRK12809        386 --D-----ITFSD-LTSEYDAVFIGVGTYGM  408 (639)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              1     11111 13468999999998654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.66  E-value=0.00063  Score=68.57  Aligned_cols=98  Identities=14%  Similarity=0.290  Sum_probs=72.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccc--------cC--------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LF--------------------------------  202 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~--------~~--------------------------------  202 (479)
                      .|+|||+|+.|+-+|..|++.| .+|+++++.+.....        .+                                
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            3899999999999999999999 999999876421100        00                                


Q ss_pred             -----------------------CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          203 -----------------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       203 -----------------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                                             -.++.+.+.+.+.+ .|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~Ad  158 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAAD  158 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEec
Confidence                                   01233344455555 49999999999999874333 3 4777888899999999999


Q ss_pred             CCCCC
Q 011700          259 GIRPN  263 (479)
Q Consensus       259 G~~p~  263 (479)
                      |....
T Consensus       159 G~~S~  163 (382)
T TIGR01984       159 GANSK  163 (382)
T ss_pred             CCChH
Confidence            97654

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.65  E-value=0.00071  Score=68.35  Aligned_cols=99  Identities=24%  Similarity=0.353  Sum_probs=73.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------cc-C------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------RL-F------------------  202 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------~~-~------------------  202 (479)
                      -+|+|||+|+.|+-+|..|.+.|.+|+++++.+....                     .. +                  
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   85 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF   85 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence            4799999999999999999999999999997744211                     00 0                  


Q ss_pred             ------------------------CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700          203 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  257 (479)
Q Consensus       203 ------------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a  257 (479)
                                              ...+.+.+.+.+++.| ++++ +.++++++..++ . ..+.+.+|+++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~~vI~a  162 (388)
T PRK07608         86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD-A-ATLTLADGQVLRADLVVGA  162 (388)
T ss_pred             ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC-e-EEEEECCCCEEEeeEEEEe
Confidence                                    1123344556667777 9988 888999876333 3 3577888888999999999


Q ss_pred             cCCCCCh
Q 011700          258 IGIRPNT  264 (479)
Q Consensus       258 ~G~~p~~  264 (479)
                      .|.....
T Consensus       163 dG~~S~v  169 (388)
T PRK07608        163 DGAHSWV  169 (388)
T ss_pred             CCCCchH
Confidence            9987643

>PRK09126 hypothetical protein; Provisional

Probab=97.64  E-value=0.00062  Score=68.92  Aligned_cols=101  Identities=25%  Similarity=0.364  Sum_probs=73.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-----------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-----------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-----------------------------------  200 (479)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+..-       .+                                   
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999999764310       00                                   


Q ss_pred             --------cCC---------------HHHHHHHHHHH-HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          201 --------LFT---------------PKIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       201 --------~~~---------------~~~~~~~~~~l-~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                              .++               ..+.+.+.+.+ +..|++++.++++++++.+ ++. ..+.+++|+++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~a~~vI~  161 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLANGRRLTARLLVA  161 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcCCCEEEeCEEEE
Confidence                    000               01122222333 3468999999999999873 333 357788899999999999


Q ss_pred             ecCCCCChh
Q 011700          257 GIGIRPNTS  265 (479)
Q Consensus       257 a~G~~p~~~  265 (479)
                      |.|..+...
T Consensus       162 AdG~~S~vr  170 (392)
T PRK09126        162 ADSRFSATR  170 (392)
T ss_pred             eCCCCchhh
Confidence            999877654

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.64  E-value=0.00013  Score=82.08  Aligned_cols=92  Identities=23%  Similarity=0.266  Sum_probs=68.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.||++++++.+..    
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~----  505 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK----  505 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC----
Confidence            4789999999999999999999999999999876442       11 13567778888889999999999875411    


Q ss_pred             CCCcEEEEEeCCC-cEEeccEEEEecCCC-CC
Q 011700          234 SNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PN  263 (479)
Q Consensus       234 ~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~-p~  263 (479)
                       +     +.+.+- +...+|.||+|||.. |.
T Consensus       506 -~-----~~~~~l~~~~~yDaViIATGa~~pr  531 (1006)
T PRK12775        506 -T-----FTVPQLMNDKGFDAVFLGVGAGAPT  531 (1006)
T ss_pred             -c-----cCHHHHhhccCCCEEEEecCCCCCC
Confidence             1     111111 124589999999984 44

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.63  E-value=0.00067  Score=68.61  Aligned_cols=97  Identities=20%  Similarity=0.310  Sum_probs=70.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------------------------c--------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------L--------------  201 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------~--------------  201 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                            .              
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            3899999999999999999999999999976432100                            0              


Q ss_pred             -C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          202 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       202 -~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                       + ...+.+.+.+.+.+.|++++ ..++..++.+ ++....+.+.+|+++.++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence             0 02233455566677789886 4567888763 2333457778888999999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.63  E-value=0.00022  Score=76.30  Aligned_cols=98  Identities=15%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH-HHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW-YNE   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   83 (479)
                      .+++|||||+.|+..|..++++|.+   |++|++.+...                   +.+.    ........+. +++
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll-------------------~~~d----~eis~~l~~~ll~~  366 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL-------------------PLLD----ADVAKYFERVFLKS  366 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc-------------------ccCC----HHHHHHHHHHHhhc
Confidence            5799999999999999999998876   99999875310                   0000    0001122333 356


Q ss_pred             cCcEEEeCceEEEEECCC--cEEE--eC-------CC--------cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRR--KTLV--TA-------TG--------ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~--~~-------~g--------~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.|.+++.++  +.+.  +.       ++        +++++|.+++|||.+|...
T Consensus       367 ~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~  430 (659)
T PTZ00153        367 KPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN  430 (659)
T ss_pred             CCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence            899999999999987653  2232  21       11        3799999999999998753

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.63  E-value=0.00059  Score=70.30  Aligned_cols=58  Identities=26%  Similarity=0.550  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      .+.+.+.+..+++||+++.++ |.++..+++|.+..|.+.+|+++++|.+|=|+|++..
T Consensus       155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            455667777788999999885 7777776788899999999999999999999998654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK08013 oxidoreductase; Provisional

Probab=97.61  E-value=0.00068  Score=68.87  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------cc---------c-----------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------AR---------L-----------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------~-----------------  201 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.               +.         .                 
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~   83 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV   83 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence            479999999999999999999999999999764310               00         0                 


Q ss_pred             ----------CC---------------HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700          202 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  255 (479)
Q Consensus       202 ----------~~---------------~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi  255 (479)
                                ++               ..+.+.+.+.+++. ||+++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV  161 (400)
T PRK08013         84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV  161 (400)
T ss_pred             EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence                      00               01122333444443 7999999999999874443  35677889999999999


Q ss_pred             EecCCCCChh
Q 011700          256 VGIGIRPNTS  265 (479)
Q Consensus       256 ~a~G~~p~~~  265 (479)
                      -|-|......
T Consensus       162 gADG~~S~vR  171 (400)
T PRK08013        162 GADGANSWLR  171 (400)
T ss_pred             EeCCCCcHHH
Confidence            9999876553

>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A

Probab=97.60  E-value=0.00094  Score=51.60  Aligned_cols=74  Identities=24%  Similarity=0.338  Sum_probs=57.9

Q ss_pred             eEEEeecCcceEeecCCC--ceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhh
Q 011700          342 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET  417 (479)
Q Consensus       342 ~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~~~~~  417 (479)
                      ||||.+++..++++|...  ++.+..++.....|..++.++|+++|+..+|. +.++..+..+|+.+..++ -+.+..
T Consensus         1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~d   76 (85)
T PF14759_consen    1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLAD   76 (85)
T ss_dssp             EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHHS
T ss_pred             CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhcC
Confidence            689999999999999754  45677888777889888889999999999995 678888899999998775 455543

...

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.60  E-value=0.00075  Score=71.36  Aligned_cols=102  Identities=20%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...                                         
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            457999999999999999999999999999977321000                                         


Q ss_pred             ---cCC-----------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEE
Q 011700          201 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV  255 (479)
Q Consensus       201 ---~~~-----------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi  255 (479)
                         .++                 +++.+.+.+.+.+ .|++++.++++++++.++++ + .+.+.  +|  +++.+|.||
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~vV  167 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG-V-TVTLTDADGQRETVRARYVV  167 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEEE
Confidence               000                 1222334444544 48999999999999885544 2 34444  56  479999999


Q ss_pred             EecCCCCChh
Q 011700          256 VGIGIRPNTS  265 (479)
Q Consensus       256 ~a~G~~p~~~  265 (479)
                      -|.|.+....
T Consensus       168 gADG~~S~vR  177 (538)
T PRK06183        168 GCDGANSFVR  177 (538)
T ss_pred             ecCCCchhHH
Confidence            9999877653

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.60  E-value=0.00074  Score=68.22  Aligned_cols=101  Identities=16%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc--cc---c---c--cCCH----------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP----------------------------  204 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--~l---~---~--~~~~----------------------------  204 (479)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+.  +.   +   +  .+.+                            
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~   83 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET   83 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence            3699999999999999999999999999996531  00   0   0  0000                            


Q ss_pred             ---------------------------HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          205 ---------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       205 ---------------------------~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                                                 .+...+.+.+++ .+++++.++++++++.++++  ..+.+.+|+++.+|+||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg  161 (384)
T PRK08849         84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG  161 (384)
T ss_pred             EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence                                       001112222222 36999999999999874443  357888999999999999


Q ss_pred             ecCCCCChh
Q 011700          257 GIGIRPNTS  265 (479)
Q Consensus       257 a~G~~p~~~  265 (479)
                      |.|..+...
T Consensus       162 ADG~~S~vR  170 (384)
T PRK08849        162 ADGANSQVR  170 (384)
T ss_pred             ecCCCchhH
Confidence            999987764

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.59  E-value=0.00024  Score=75.62  Aligned_cols=65  Identities=18%  Similarity=0.312  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC-Cc--EEec-cEEEEecCC-CCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~Vi~a~G~-~p~~~l~~  268 (479)
                      ...+...+.+.+++.||+++.++.+.++.. +++++..|...+ ++  ++.+ +.||+|+|- ..|.++++
T Consensus       220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence            566778888889999999999999999876 467787776644 33  4676 689999984 44545544

>PRK06753 hypothetical protein; Provisional

Probab=97.59  E-value=0.00043  Score=69.56  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----cCCHHH---------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI---------------------------------  206 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----~~~~~~---------------------------------  206 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+...    .+.+..                                 
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~   81 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL   81 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence            6899999999999999999999999999987532110    000000                                 


Q ss_pred             ---------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          207 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       207 ---------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                     ...+.+.|.+  .+.++++++++++++.+ ++.+ .+.+.+|+++.+|+||-|-|....+.
T Consensus        82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~vR  155 (373)
T PRK06753         82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSKVR  155 (373)
T ss_pred             eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchHHH
Confidence                           0112222222  24578899999999863 3433 57788999999999999999776554

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.59  E-value=0.00059  Score=71.58  Aligned_cols=95  Identities=20%  Similarity=0.289  Sum_probs=69.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC-cc-----------------------ccc-------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA-HC-----------------------MAR-------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~-----------------------l~~-------------------  200 (479)
                      .|+|||||+.|++.|..+++.|.+|.++++.. .+                       +..                   
T Consensus         6 DVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~s   85 (618)
T PRK05192          6 DVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTS   85 (618)
T ss_pred             eEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeecccC
Confidence            59999999999999999999999999998863 11                       000                   


Q ss_pred             ----------cCCH-HHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          201 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       201 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                                .+|. .+...+.+.+++. |++++ ...+.++.. +++++..|.+.+|..+.|+.||+|+|.
T Consensus        86 kGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT  155 (618)
T PRK05192         86 KGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT  155 (618)
T ss_pred             CCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence                      0010 1123334444444 78876 445777765 467788899999999999999999994

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.59  E-value=0.00087  Score=67.53  Aligned_cols=99  Identities=18%  Similarity=0.313  Sum_probs=73.4

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------c--cCC-------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT-------------------------------  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------~--~~~-------------------------------  203 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.       +  .+.                               
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            389999999999999999999999999998753100       0  000                               


Q ss_pred             -------------------------HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700          204 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  257 (479)
Q Consensus       204 -------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a  257 (479)
                                               ..+.+.+.+.+++.| ++++.++++++++.+ ++.+ .+.+++|+++.+|.||.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~a  158 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVGA  158 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEEe
Confidence                                     112333444555666 999999999999863 3333 577889989999999999


Q ss_pred             cCCCCCh
Q 011700          258 IGIRPNT  264 (479)
Q Consensus       258 ~G~~p~~  264 (479)
                      .|.....
T Consensus       159 dG~~S~v  165 (385)
T TIGR01988       159 DGANSKV  165 (385)
T ss_pred             CCCCCHH
Confidence            9987543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00058  Score=67.91  Aligned_cols=37  Identities=30%  Similarity=0.381  Sum_probs=33.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      +..||||||+|.+||+||.+|.+.|++   |+|+|..+..
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~   42 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRV   42 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCc
Confidence            357999999999999999999999998   8999998753

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.57  E-value=0.00018  Score=77.84  Aligned_cols=92  Identities=22%  Similarity=0.332  Sum_probs=67.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+-       +. .++.++.+...+.+++.||+++.++.+..   
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  402 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK---  402 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence            36899999999999999999999999999999876531       11 13566666667778889999999886521   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                        +     +.+.+ ....+|.|++|+|..+.
T Consensus       403 --~-----i~~~~-~~~~~DavilAtGa~~~  425 (654)
T PRK12769        403 --D-----ISLES-LLEDYDAVFVGVGTYRS  425 (654)
T ss_pred             --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence              1     11111 12368999999997543

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.56  E-value=5.8e-05  Score=82.82  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=30.1

Q ss_pred             eEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      +|+||||||||+++|..|++.  |++   |+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence            899999999999999999997  666   999999874

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.56  E-value=0.00044  Score=65.51  Aligned_cols=35  Identities=29%  Similarity=0.381  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||+|.|||.||.+|+..|.+   |+++|++..
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge   39 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE   39 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence            58999999999999999999999998   899998865

>PRK07190 hypothetical protein; Provisional

Probab=97.55  E-value=0.00087  Score=69.78  Aligned_cols=100  Identities=19%  Similarity=0.363  Sum_probs=74.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------------------------cc-
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL-  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~~-  201 (479)
                      -.|+|||+|++|+-+|..|++.|.+|.++++.+....                                        .. 
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            4699999999999999999999999999987632100                                        00 


Q ss_pred             --------------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          202 --------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       202 --------------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                                          ++ ..+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+|+++.++.||.|.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCCC
Confidence                                00 112234455667789999999999999875444 2 355677889999999999998


Q ss_pred             CCCh
Q 011700          261 RPNT  264 (479)
Q Consensus       261 ~p~~  264 (479)
                      +...
T Consensus       164 ~S~v  167 (487)
T PRK07190        164 RSFV  167 (487)
T ss_pred             CHHH
Confidence            6543

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.54  E-value=0.0016  Score=66.24  Aligned_cols=136  Identities=22%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------------------ccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------ARL  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~~  201 (479)
                      .++++|||+|++|+-.|..|.+.|.++++++|.+.+-                                        ++.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~   85 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY   85 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence            6899999999999999999999999999999884321                                        001


Q ss_pred             C-C-HHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCC----cEEeccEEEEecCCC--CChhhhhcc-
Q 011700          202 F-T-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ-  270 (479)
Q Consensus       202 ~-~-~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~Vi~a~G~~--p~~~l~~~~-  270 (479)
                      + + .++.++++.+.++.++  .+.+++++.+++...+|+ ..|...++    ++.-+|.|++|+|--  |+.+..... 
T Consensus        86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk-W~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK-WRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc-eeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence            1 1 2667778888887776  577888888888743233 34555443    367799999999976  665544331 


Q ss_pred             ccc-ccCcEEEcCcccC---CCCCeEEEeeec
Q 011700          271 LTL-EKGGIKVTGRLQS---SNSSVYAVGDVA  298 (479)
Q Consensus       271 ~~~-~~g~i~Vd~~l~t---~~~~IyA~GD~~  298 (479)
                      +.. ....|..-++-..   ....|..+|--.
T Consensus       165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~  196 (448)
T KOG1399|consen  165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN  196 (448)
T ss_pred             hhhcCCcceehhhccCcccccCceEEEECCCc
Confidence            222 3333333333222   346788888543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.0019  Score=66.31  Aligned_cols=99  Identities=24%  Similarity=0.362  Sum_probs=74.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCccccc-----------------------cC------C--HHHHHH
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR-----------------------LF------T--PKIASY  209 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~-----------------------~~------~--~~~~~~  209 (479)
                      -.+|+|||+|.+|+-.|..|.+.|.. +.++++.+.+-..                       .+      +  .++.++
T Consensus         8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y   87 (443)
T COG2072           8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY   87 (443)
T ss_pred             cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence            36799999999999999999999998 9999987422100                       01      0  236778


Q ss_pred             HHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCC
Q 011700          210 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI  260 (479)
Q Consensus       210 ~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~  260 (479)
                      +.+++++.++.  +..++.|..+..++++....|.++++.+  +.+|.|++|+|.
T Consensus        88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~  142 (443)
T COG2072          88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH  142 (443)
T ss_pred             HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence            88888877754  4455666667766677777888888765  559999999996

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.52  E-value=0.0012  Score=66.81  Aligned_cols=100  Identities=18%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------ccc-------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------ARL-------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------~~~-------------  201 (479)
                      -+|+|||+|+.|+-+|..|++.|.+|+++++.+...                            ...             
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET   85 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence            479999999999999999999999999998763100                            000             


Q ss_pred             ---------C---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          202 ---------F---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       202 ---------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                               +               ...+.+.+.+.+++. |++++.++++.+++.++++  ..+.+.+++++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~  163 (391)
T PRK08020         86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG  163 (391)
T ss_pred             EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence                     0               011223344445555 9999999999999863333  357778888999999999


Q ss_pred             ecCCCCCh
Q 011700          257 GIGIRPNT  264 (479)
Q Consensus       257 a~G~~p~~  264 (479)
                      |.|.....
T Consensus       164 AdG~~S~v  171 (391)
T PRK08020        164 ADGANSQV  171 (391)
T ss_pred             eCCCCchh
Confidence            99987754

>PRK10015 oxidoreductase; Provisional

Probab=97.51  E-value=0.0012  Score=67.66  Aligned_cols=98  Identities=18%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc------------------cccc-----------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------------------MARL-----------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~------------------l~~~-----------------------  201 (479)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.+                  ++..                       
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA   85 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence            36999999999999999999999999999876321                  0100                       


Q ss_pred             ----C----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          202 ----F----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       202 ----~----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                          +                -..+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN  163 (429)
T ss_pred             eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence                0                011222355666778999999999999876 3455544543 44689999999999975


Q ss_pred             C
Q 011700          262 P  262 (479)
Q Consensus       262 p  262 (479)
                      .
T Consensus       164 s  164 (429)
T PRK10015        164 S  164 (429)
T ss_pred             h
Confidence            4

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.51  E-value=0.0011  Score=67.47  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-Cccc------cc--cCC-----------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFT-----------------------------  203 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l------~~--~~~-----------------------------  203 (479)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++. +...      .+  .+.                             
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            357999999999999999999999999999974 1100      00  000                             


Q ss_pred             ---------------------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEE
Q 011700          204 ---------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV  255 (479)
Q Consensus       204 ---------------------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi  255 (479)
                                                 ..+.+.+.+.+.+ .||+++.++++++++.++++  ..+.+.+|+++.+|+||
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI  161 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV  161 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence                                       0112223333433 47999999999999764333  35778899999999999


Q ss_pred             EecCCCCCh
Q 011700          256 VGIGIRPNT  264 (479)
Q Consensus       256 ~a~G~~p~~  264 (479)
                      .|-|.....
T Consensus       162 gADG~~S~v  170 (405)
T PRK08850        162 GADGANSWL  170 (405)
T ss_pred             EeCCCCChh
Confidence            999976654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.49  E-value=0.00025  Score=76.42  Aligned_cols=92  Identities=22%  Similarity=0.302  Sum_probs=68.1

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+.+|..|++.|.+|+++++.+.+.       +. .++.++.+...+.+++.|+++++++.+. .+ 
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d-  269 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD-  269 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence            35789999999999999999999999999999886541       11 1356666666778888999999887541 11 


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                              +.+.+. ...+|.|++|+|..+.
T Consensus       270 --------v~~~~~-~~~~DaVilAtGa~~~  291 (652)
T PRK12814        270 --------ITLEEL-QKEFDAVLLAVGAQKA  291 (652)
T ss_pred             --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence                    111111 2358999999998754

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.47  E-value=0.00049  Score=70.21  Aligned_cols=92  Identities=12%  Similarity=0.186  Sum_probs=61.1

Q ss_pred             CCCCEEEECCChHHHHHHHHH-hhCCCeEEEEeecCcccccc---C---C---HHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL---F---T---PKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l-~~~g~~Vtlv~~~~~~l~~~---~---~---~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .+++|+|||+|+.|+.+|..| ++.|.+|+++++.+.+..-.   .   .   ..+.+.+.+.+...+++++.+..+.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~-  116 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV-  116 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence            478999999999999999975 46799999999987653210   0   1   23444555556667888875433211 


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                          +     +..++= .-.+|.||+|+|..+.
T Consensus       117 ----D-----vt~eeL-~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        117 ----D-----LKMEEL-RNHYNCVIFCCGASEV  139 (506)
T ss_pred             ----c-----cCHHHH-HhcCCEEEEEcCCCCC
Confidence                1     111111 2368999999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.45  E-value=0.0022  Score=57.83  Aligned_cols=104  Identities=16%  Similarity=0.209  Sum_probs=69.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc------C-------------------------------C
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------T  203 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~------~-------------------------------~  203 (479)
                      ..-.++|||+|+.|+-+|..|++.|.+|.+++++..+-...      |                               .
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~   95 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADS   95 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-H
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcH
Confidence            45689999999999999999999999999999874321110      0                               1


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----------CCcEEeccEEEEecCCCCCh
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .+....+....-+.|++++..+.++.+-..++.++..+..+           |--.+++..|+=|||...+.
T Consensus        96 ~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   96 VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence            22333333334458999999999998876444777777653           22479999999999987765

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.45  E-value=0.0015  Score=61.57  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCC---cEEEEEeCCCcEEeccEEEEecCCCCChhhhhcc
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ  270 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g---~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~  270 (479)
                      ..+.+.++..|-++.++-+++.+..+.++   -...|....++++.+..++-++|...+.--..++
T Consensus       200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sg  265 (453)
T KOG2665|consen  200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSG  265 (453)
T ss_pred             HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhC
Confidence            33445578888899999998888765443   2223333446789999999999987665433333

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.44  E-value=0.00015  Score=75.02  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++++|||||||+|||+||++|.+.|++   |+|+|....
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdR   49 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDR   49 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCC
Confidence            357999999999999999999999998   999999875

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.44  E-value=0.0014  Score=65.95  Aligned_cols=99  Identities=13%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC----ccc--cc--cC---------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCM--AR--LF---------------------------------  202 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~~l--~~--~~---------------------------------  202 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+    .+.  .+  .+                                 
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   82 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK   82 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence            58999999999999999999999999999641    100  00  00                                 


Q ss_pred             --------------------CHHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          203 --------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       203 --------------------~~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                                          -.++.+.+.+.+++.+ ++++.++++++++.++++ + .+.+.++ ++.+|+||-|-|..
T Consensus        83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~~-~~~adlvIgADG~~  159 (374)
T PRK06617         83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY-S-IIKFDDK-QIKCNLLIICDGAN  159 (374)
T ss_pred             CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe-E-EEEEcCC-EEeeCEEEEeCCCC
Confidence                                0223444455555554 899999999999874433 3 4777766 89999999999988


Q ss_pred             CChh
Q 011700          262 PNTS  265 (479)
Q Consensus       262 p~~~  265 (479)
                      ....
T Consensus       160 S~vR  163 (374)
T PRK06617        160 SKVR  163 (374)
T ss_pred             chhH
Confidence            7654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.41  E-value=0.00035  Score=67.48  Aligned_cols=98  Identities=18%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||+|.-||..+.-..|+|.+   ||++|-.+...-                   .+    ..+......+.+.+
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~-------------------~m----D~Eisk~~qr~L~k  264 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGG-------------------VM----DGEISKAFQRVLQK  264 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhcc-------------------cc----CHHHHHHHHHHHHh
Confidence            46899999999999999999999877   999987753110                   00    01122445677888


Q ss_pred             cCcEEEeCceEEEEECCCc-EE--EeC---CC--cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK-TL--VTA---TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~-~v--~~~---~g--~~~~~d~lviAtG~~~~~  127 (479)
                      .|++|.++++|..++++.. .|  .+.   ++  +++++|.|++|+|-+|+.
T Consensus       265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t  316 (506)
T KOG1335|consen  265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT  316 (506)
T ss_pred             cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence            9999999999999987654 33  332   22  579999999999999875

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.41  E-value=0.0017  Score=65.57  Aligned_cols=100  Identities=26%  Similarity=0.306  Sum_probs=71.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-c-------------------------------------c--
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-R-------------------------------------L--  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~-------------------------------------~--  201 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.... +                                     .  
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~   86 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL   86 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence            34799999999999999999999999999998632100 0                                     0  


Q ss_pred             -------C---------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          202 -------F---------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       202 -------~---------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                             +               ...+.+.+.+.+.+. ++. +.++++.+++.+++ .+ .+.+++|+++.+|.||.|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~Ad  163 (388)
T PRK07494         87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPRED-EV-TVTLADGTTLSARLVVGAD  163 (388)
T ss_pred             CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEec
Confidence                   0               012233444555554 465 77899999986333 33 4778888899999999999


Q ss_pred             CCCCCh
Q 011700          259 GIRPNT  264 (479)
Q Consensus       259 G~~p~~  264 (479)
                      |.....
T Consensus       164 G~~S~v  169 (388)
T PRK07494        164 GRNSPV  169 (388)
T ss_pred             CCCchh
Confidence            987643

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.40  E-value=0.0091  Score=57.29  Aligned_cols=57  Identities=16%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          202 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       202 ~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      ......+.+++.-..-+-++.+++.|..+....+|++  +...||++-.+|.||+|+-.
T Consensus       215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~  271 (447)
T COG2907         215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHP  271 (447)
T ss_pred             cccchHHHHHHHhccccceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecCh
Confidence            3333444555444443445889999999987677743  55567988899999999754

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.40  E-value=0.0017  Score=65.81  Aligned_cols=101  Identities=18%  Similarity=0.278  Sum_probs=75.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------ccc-----------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL-----------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~~-----------------------  201 (479)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.+.+-                  +..                       
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            369999999999999999999999999999863211                  000                       


Q ss_pred             --------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          202 --------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       202 --------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                              + -..+-+.+.+..++.|++++.++.+..+..++++.+..+ ..++.++.++.||.|.|.....
T Consensus        84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~l  154 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSAL  154 (396)
T ss_pred             cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchHH
Confidence                    0 012344566677789999999999999998555555433 3444789999999999976543

>PRK06185 hypothetical protein; Provisional

Probab=97.39  E-value=0.0021  Score=65.47  Aligned_cols=101  Identities=22%  Similarity=0.328  Sum_probs=71.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------c-------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R-------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-------------------  200 (479)
                      ...|+|||+|++|+-+|..|++.|.+|+++++.+....                      .                   
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            35799999999999999999999999999997632100                      0                   


Q ss_pred             -----cC--------------CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEE--eCCCc-EEeccEEEEe
Q 011700          201 -----LF--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN--LRDGN-RLPTDMVVVG  257 (479)
Q Consensus       201 -----~~--------------~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~--~~~g~-~i~~D~Vi~a  257 (479)
                           .+              ...+.+.+.+.+++ .|++++.++++.+++.+ ++.+..+.  ..+|+ ++.+|.||.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A  164 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA  164 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence                 00              01223344444444 48999999999999873 45544343  44664 7999999999


Q ss_pred             cCCCCC
Q 011700          258 IGIRPN  263 (479)
Q Consensus       258 ~G~~p~  263 (479)
                      .|....
T Consensus       165 dG~~S~  170 (407)
T PRK06185        165 DGRHSR  170 (407)
T ss_pred             CCCchH
Confidence            998754

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.39  E-value=0.0017  Score=68.07  Aligned_cols=98  Identities=15%  Similarity=0.264  Sum_probs=70.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------cc-------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR-------------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------~~-------------------------  200 (479)
                      .++|||+|+.|+++|..+++.|.+|.++++.....                  .+                         
T Consensus         2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s   81 (617)
T TIGR00136         2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS   81 (617)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence            48999999999999999999999999998652110                  00                         


Q ss_pred             ----------cCCH-HHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          201 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       201 ----------~~~~-~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                                .+|+ .+...+.+.+++. +++++.+ .+.++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus        82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL  154 (617)
T TIGR00136        82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL  154 (617)
T ss_pred             CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence                      0011 1123445556655 7888765 5666655336778889999999999999999999764

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.39  E-value=0.0021  Score=65.10  Aligned_cols=100  Identities=20%  Similarity=0.295  Sum_probs=71.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhC---CCeEEEEeecC-c-------------ccc---------cc---------------
Q 011700          163 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEA-H-------------CMA---------RL---------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~-~-------------~l~---------~~---------------  201 (479)
                      -+|+|||+|+.|+-+|..|++.   |.+|+++++.. .             +.+         ..               
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~   83 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH   83 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence            4799999999999999999998   99999999831 1             000         00               


Q ss_pred             -----------CC---------------HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEE
Q 011700          202 -----------FT---------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV  254 (479)
Q Consensus       202 -----------~~---------------~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~V  254 (479)
                                 +.               .++.+.+.+.+.+ .|++++.++++++++.. ++.+ .+.+.++.++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~v  161 (395)
T PRK05732         84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLL  161 (395)
T ss_pred             EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEE
Confidence                       00               0112233444444 47999999999999763 3333 477788888999999


Q ss_pred             EEecCCCCCh
Q 011700          255 VVGIGIRPNT  264 (479)
Q Consensus       255 i~a~G~~p~~  264 (479)
                      |.|.|.....
T Consensus       162 I~AdG~~S~v  171 (395)
T PRK05732        162 VAADGSHSAL  171 (395)
T ss_pred             EEecCCChhh
Confidence            9999987653

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.39  E-value=0.0002  Score=71.80  Aligned_cols=34  Identities=35%  Similarity=0.572  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||+|||||++|+.||..|+++|++   |+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence            6999999999999999999999988   999997654

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.38  E-value=0.0017  Score=73.40  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc----------CCHHHHHHHHHHHHhC-CcEEEcCCceEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------FTPKIASYYEEYYKSK-GVKFVKGTVLSSF  230 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------~~~~~~~~~~~~l~~~-GV~i~~~~~v~~i  230 (479)
                      ..+|+|||+|+.|+..|..+++.|.+|++++..+.+-...          -..++.+.+.+.+++. +|+++.++.|..+
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i  242 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY  242 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence            4689999999999999999999999999999875532211          1123434455666656 5999999988887


Q ss_pred             EEcCCCcEEEEE-eC-------CC------cEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~-~~-------~g------~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ..  ++.+..+. ..       ++      .++.+|.||+|||..|...
T Consensus       243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~  289 (985)
T TIGR01372       243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL  289 (985)
T ss_pred             ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence            43  22221111 00       11      1689999999999887543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.37  E-value=0.00058  Score=70.13  Aligned_cols=30  Identities=30%  Similarity=0.616  Sum_probs=27.7

Q ss_pred             EECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            9 IVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         9 IIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |||+|.||++||.++++.|.+   |+|+||.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~---V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGAS---VLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            799999999999999999987   999999874

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK09897 hypothetical protein; Provisional

Probab=97.35  E-value=0.0029  Score=66.14  Aligned_cols=99  Identities=11%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccc----------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR----------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~----------------------------------------  200 (479)
                      ++|+|||+|+.|+-++..|.+.+  .+|++++++..+-..                                        
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~   81 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL   81 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence            47999999999999999998764  479999985321100                                        


Q ss_pred             --------------c-----CCHHHHHH---HHHHHHhCC--cEEEcCCceEEEEEcCCCcEEEEEeCC-CcEEeccEEE
Q 011700          201 --------------L-----FTPKIASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV  255 (479)
Q Consensus       201 --------------~-----~~~~~~~~---~~~~l~~~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~Vi  255 (479)
                                    +     +...+.+.   +.+.+.+.|  ++++.+++|+.++..+++  ..+.+.+ +..+.+|.||
T Consensus        82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV  159 (534)
T PRK09897         82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV  159 (534)
T ss_pred             HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence                          0     01111111   222334455  788889899999874333  3466655 4689999999


Q ss_pred             EecCCCCC
Q 011700          256 VGIGIRPN  263 (479)
Q Consensus       256 ~a~G~~p~  263 (479)
                      +|+|..++
T Consensus       160 LAtGh~~p  167 (534)
T PRK09897        160 IATGHVWP  167 (534)
T ss_pred             ECCCCCCC
Confidence            99997543

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.35  E-value=0.00021  Score=75.64  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=34.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |..++||||||+|.|||+||+++++.|.+   |+|||+.+
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~   37 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN   37 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence            67789999999999999999999999987   89999987

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.34  E-value=0.0024  Score=64.85  Aligned_cols=100  Identities=15%  Similarity=0.265  Sum_probs=70.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------  200 (479)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...                                          
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~   82 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR   82 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence            78999999999999999999999999999976321000                                          


Q ss_pred             -cC-------------------C-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEE
Q 011700          201 -LF-------------------T-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV  255 (479)
Q Consensus       201 -~~-------------------~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi  255 (479)
                       .+                   . .++.+.+.+.+.+ .++++++++++++++.++++ + .+.+   .+++++.+|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI  160 (400)
T PRK06475         83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI  160 (400)
T ss_pred             eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence             00                   0 1222334444443 47999999999999864333 2 3443   334679999999


Q ss_pred             EecCCCCCh
Q 011700          256 VGIGIRPNT  264 (479)
Q Consensus       256 ~a~G~~p~~  264 (479)
                      -|-|.....
T Consensus       161 gADG~~S~v  169 (400)
T PRK06475        161 ACDGVWSML  169 (400)
T ss_pred             ECCCccHhH
Confidence            999987654

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00052  Score=74.22  Aligned_cols=94  Identities=19%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++|.|||+|+.|+-+|..|.+.|..|++.+|++++-.-        -+|..+.++-.+.|.+.||+|+++++|-+-  
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence            4789999999999999999999999999999999885321        146777777788899999999999865331  


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                              +. -|+-.-+.|.|++|+|..-..+
T Consensus      1862 --------vs-~d~l~~~~daiv~a~gst~prd 1885 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGSTTPRD 1885 (2142)
T ss_pred             --------cc-HHHHhhccCeEEEEeCCCCCcC
Confidence                    11 1222345699999999654433

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.33  E-value=0.0011  Score=65.45  Aligned_cols=55  Identities=24%  Similarity=0.318  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      -.++..+.+.+++.|-++.++..|++|.- ++|++..|.+.||+++....|+.-++
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt  318 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNAT  318 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCc
Confidence            46778888999999999999999999998 45999999999999999977776554

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.00039  Score=68.87  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+|||||||||.||..||..++|.|.+   .+|+..+-.
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~ld   62 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNLD   62 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCc---eEEeecccc
Confidence            368999999999999999999999987   577776644

>PRK13984 putative oxidoreductase; Provisional

Probab=97.31  E-value=0.00058  Score=73.28  Aligned_cols=91  Identities=18%  Similarity=0.194  Sum_probs=67.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+-       +. .++.++.+...+.+++.|++++.++.+..   
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  358 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK---  358 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence            46789999999999999999999999999998876531       11 13455555556778889999999976532   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                        +     +...+ ....+|.||+|+|..+
T Consensus       359 --~-----~~~~~-~~~~yD~vilAtGa~~  380 (604)
T PRK13984        359 --D-----IPLEE-LREKHDAVFLSTGFTL  380 (604)
T ss_pred             --c-----CCHHH-HHhcCCEEEEEcCcCC
Confidence              1     11111 1357999999999764

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.30  E-value=0.00065  Score=68.56  Aligned_cols=34  Identities=29%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +|+|||+|..|+|+|..|++.|.+|+++++.+..
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            6899999999999999999999999999987664

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.29  E-value=0.0015  Score=66.68  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcccccc-----------------CCHHH-------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL-----------------FTPKI-------------------  206 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~-----------------~~~~~-------------------  206 (479)
                      +|+|||+|+.|+-+|..|++.| .+|+++++.+.+....                 +.+.+                   
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~   81 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR   81 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence            6999999999999999999998 5999999875421100                 00000                   


Q ss_pred             ----------------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          207 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       207 ----------------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                                            ...+.+.|.+  ..+.++.++++++++.++++  ..+.+.+|+++++|.||.|.|...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S  159 (414)
T TIGR03219        82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS  159 (414)
T ss_pred             ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence                                  0111222211  14567889999999874333  357888999999999999999776


Q ss_pred             Ch
Q 011700          263 NT  264 (479)
Q Consensus       263 ~~  264 (479)
                      ..
T Consensus       160 ~v  161 (414)
T TIGR03219       160 AL  161 (414)
T ss_pred             HH
Confidence            43

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.28  E-value=0.00021  Score=73.26  Aligned_cols=95  Identities=19%  Similarity=0.314  Sum_probs=26.5

Q ss_pred             EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------------
Q 011700          165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------------  200 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------------  200 (479)
                      |+|||||+.|+-.|..+++.|.+|.|+++.+.+-..                                            
T Consensus         2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~   81 (428)
T PF12831_consen    2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW   81 (428)
T ss_dssp             EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence            799999999999999999999999999988432100                                            


Q ss_pred             ----cCCHHH-HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---CcEEeccEEEEecCC
Q 011700          201 ----LFTPKI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI  260 (479)
Q Consensus       201 ----~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~Vi~a~G~  260 (479)
                          .++++. ...+.+.+++.||++++++.+.++.. +++++..|.+.+   ..++.++.+|=|+|.
T Consensus        82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence                122222 22345566778999999999999987 566788888865   457999999999994

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.28  E-value=0.004  Score=65.27  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=77.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------cCC-
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT-  203 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~~-  203 (479)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.+.+-..                                      ..+ 
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~  141 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK  141 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            46999999999999999999999999999876421100                                      000 


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700          204 ------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  235 (479)
Q Consensus       204 ------------------------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  235 (479)
                                                                      ..+.+.+.+.+++.|+++++++.++++.. ++
T Consensus       142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~  220 (506)
T PRK06481        142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD  220 (506)
T ss_pred             HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence                                                            12334455566778999999999999986 46


Q ss_pred             CcEEEEEe--CCC--cEEeccEEEEecC-CCCChhhhhc
Q 011700          236 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG  269 (479)
Q Consensus       236 g~v~~v~~--~~g--~~i~~D~Vi~a~G-~~p~~~l~~~  269 (479)
                      +++..+..  .++  .++.++.||+|+| +.+|.++++.
T Consensus       221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            77766655  343  3688999999997 7888776653

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.28  E-value=0.00029  Score=72.76  Aligned_cols=34  Identities=24%  Similarity=0.425  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~   41 (479)
                      ++|+|||||+|||+||..|++.|  ++   |+|+|+++.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~---V~vlEa~~~   36 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDAD---ITLLEASDR   36 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCC---EEEEEcCCC
Confidence            37999999999999999999987  55   999999975

>PLN02568 polyamine oxidase

Probab=97.28  E-value=0.00031  Score=73.76  Aligned_cols=41  Identities=22%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCC--CCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGV--PPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~--~~~~V~lie~~~~   41 (479)
                      |++.+||+|||||++||+||..|.+.|.  +..+|+|+|+...
T Consensus         2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            5567899999999999999999999872  1134999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.27  E-value=0.0015  Score=65.43  Aligned_cols=95  Identities=18%  Similarity=0.300  Sum_probs=64.1

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccc--------cCCHHHHH-------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--------LFTPKIAS-------------------------  208 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~--------~~~~~~~~-------------------------  208 (479)
                      .++|||+|..|+.+|..|.+.  |.+|.++++.+.+.+.        .+++...+                         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~   80 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK   80 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence            379999999999999999987  9999999987633221        11111111                         


Q ss_pred             ---------HHHHH-HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          209 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       209 ---------~~~~~-l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                               .+.+. +++.+..++.+.+|.+++.  ++    +.+.+|+++.+|.||.|.|.++..
T Consensus        81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~~  140 (370)
T TIGR01789        81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPSA  140 (370)
T ss_pred             CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCCc
Confidence                     11111 2222334667888888843  32    455789999999999999987643

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.25  E-value=0.0036  Score=64.39  Aligned_cols=102  Identities=25%  Similarity=0.347  Sum_probs=73.6

Q ss_pred             CEEEECCChHHHHHHHHHhh----CCCeEEEEeecC--ccc------------cc-------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR-------------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~--~~l------------~~-------------------------  200 (479)
                      .|+|||+|+.|+-+|..|++    .|.+|+++++.+  ...            ++                         
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~   81 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR   81 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence            48999999999999999998    799999999832  110            00                         


Q ss_pred             ------------------cCC--------------HHHHHHHHHHHHhCC---cEEEcCCceEEEEEc-----CCCcEEE
Q 011700          201 ------------------LFT--------------PKIASYYEEYYKSKG---VKFVKGTVLSSFDVD-----SNGKVVA  240 (479)
Q Consensus       201 ------------------~~~--------------~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~-----~~g~v~~  240 (479)
                                        .++              ..+.+.+.+.+++.+   ++++.++++.+++..     +++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~  161 (437)
T TIGR01989        82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH  161 (437)
T ss_pred             CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence                              000              123334455555554   999999999999742     1233346


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+.+|+++.+|+||-|-|......
T Consensus       162 v~~~~g~~i~a~llVgADG~~S~vR  186 (437)
T TIGR01989       162 ITLSDGQVLYTKLLIGADGSNSNVR  186 (437)
T ss_pred             EEEcCCCEEEeeEEEEecCCCChhH
Confidence            7888999999999999999887654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.25  E-value=0.0035  Score=63.53  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=72.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--cc----------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~----------------------------------------  200 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  ..                                        
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            479999999999999999999999999999775310  00                                        


Q ss_pred             ----cC-------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCC
Q 011700          201 ----LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       201 ----~~-------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~  260 (479)
                          .+             -+++.+.+.+...+.|+++++++++++++.. ++....|.+ .+|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence                00             0122333444456679999999999998751 222234555 4664  6899999999998


Q ss_pred             CCChh
Q 011700          261 RPNTS  265 (479)
Q Consensus       261 ~p~~~  265 (479)
                      ...+.
T Consensus       162 ~S~vR  166 (392)
T PRK08243        162 HGVSR  166 (392)
T ss_pred             CCchh
Confidence            77653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.24  E-value=0.00075  Score=71.73  Aligned_cols=91  Identities=21%  Similarity=0.192  Sum_probs=65.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--------ccCCHHHHHHHHHHHHhCCcEEEcCCce-EEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD  231 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~GV~i~~~~~v-~~i~  231 (479)
                      .+++|+|||+|++|+.+|..|++.|.+|+++++.+.+..        ..++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            578999999999999999999999999999997765321        1134455555556677899999988754 2221


Q ss_pred             EcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          232 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       232 ~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      .  +          .....+|.|++|+|..+.
T Consensus       216 ~--~----------~~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        216 L--E----------QLEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             H--H----------HHHhhCCEEEEeeCCCCC
Confidence            1  0          011247999999998754

>PRK06126 hypothetical protein; Provisional

Probab=97.23  E-value=0.0036  Score=66.32  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.....                                         
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            468999999999999999999999999999976311000                                         


Q ss_pred             -------------c----------------------CC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700          201 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL  243 (479)
Q Consensus       201 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~  243 (479)
                                   .                      .+ ..+.+.+.+.+++ .++++++++++++++.++++ +. +.+
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~  164 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV  164 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence                         0                      00 0122233444443 48999999999999874443 32 333


Q ss_pred             ---CCCc--EEeccEEEEecCCCCCh
Q 011700          244 ---RDGN--RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       244 ---~~g~--~i~~D~Vi~a~G~~p~~  264 (479)
                         .+|+  ++.+|.||.|.|.....
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~V  190 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSAV  190 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchHH
Confidence               3453  68999999999987654

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.22  E-value=0.0048  Score=63.55  Aligned_cols=63  Identities=19%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecC-CCCChhhhh
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G-~~p~~~l~~  268 (479)
                      +.+.+.+.+++.|+++++++.++++..++++++..+...  +++  .+.++.||+|+| ...|.++.+
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            334455566778999999999999987556677666553  343  478999999999 556666554

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.22  E-value=0.0018  Score=67.45  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=58.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|.+|+++|..|+++|.+   |+++|..+...                              .....+.+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~   62 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA   62 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence            45899999999999999999998986   89998763100                              0122345677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      .|++++.+..+.              ....+|.+|+++|..|..|.
T Consensus        63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~   94 (480)
T PRK01438         63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL   94 (480)
T ss_pred             cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH
Confidence            899998875332              12458999999999887764

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.21  E-value=0.00039  Score=69.37  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +|++|||||++|+++|..|++.|.+   |+|+|+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~   35 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNH   35 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCC
Confidence            7999999999999999999988876   999999754

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.19  E-value=0.00038  Score=73.41  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||+|||||++|+++|..|++.|++   |+|+|+.+
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence            57999999999999999999999987   99999975

>PRK06996 hypothetical protein; Provisional

Probab=97.17  E-value=0.0043  Score=62.99  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC----CeEEEEeecCcc------------------cc--------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHC------------------MA--------------------  199 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g----~~Vtlv~~~~~~------------------l~--------------------  199 (479)
                      ...|+|||+|+.|+-+|..|++.|    .+|+++++.+..                  +.                    
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            357999999999999999999886    479999875210                  00                    


Q ss_pred             cc-------------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEE
Q 011700          200 RL-------------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV  256 (479)
Q Consensus       200 ~~-------------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~  256 (479)
                      ..                   . -..+.+.+.+.+++.|++++.++++++++.+.++  ..+.+.++   +++.+|+||-
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg  168 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ  168 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence            00                   0 1345566777788889999999999999764444  34666654   5899999999


Q ss_pred             ecCCC
Q 011700          257 GIGIR  261 (479)
Q Consensus       257 a~G~~  261 (479)
                      |-|..
T Consensus       169 ADG~~  173 (398)
T PRK06996        169 AEGGL  173 (398)
T ss_pred             CCCCC
Confidence            99964

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.16  E-value=0.00044  Score=73.63  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.+|+|||||++|+++|..|++.|++   |+|+|+.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence            358999999999999999999999987   99999975

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.15  E-value=0.00048  Score=72.02  Aligned_cols=58  Identities=17%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-----cEEeccEEEEecCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGIR  261 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~Vi~a~G~~  261 (479)
                      ...+.+.+.+.++++|++|++++.|++|.. +++++..+.+.++     +++.+|.||+++...
T Consensus       231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            466888899999999999999999999987 3455445655554     578999999998753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02576 protoporphyrinogen oxidase

Probab=97.13  E-value=0.00051  Score=71.88  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++||+||.+|.+. |.+   |+|+|+++.
T Consensus        12 ~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~r   47 (496)
T PLN02576         12 SKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDR   47 (496)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCC
Confidence            57999999999999999999998 776   999999975

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.11  E-value=0.0013  Score=67.88  Aligned_cols=73  Identities=15%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +..-.+..+.+-.+.   +..+.+.+....++.|..++.++.|+++.. ++++...|++..| .+++..++-|+|+-.
T Consensus       171 ~v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  171 DVYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA  243 (856)
T ss_pred             HheeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence            455677777776543   345577788888999999999999999987 4455557888777 689999999999755

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0037  Score=56.12  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=72.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEee--------------------cCccccccCCHHHHHHHHHHHHhCCcEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFP--------------------EAHCMARLFTPKIASYYEEYYKSKGVKF  221 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~GV~i  221 (479)
                      ..+++|||+|+.+.-.|..+++...+-.+++-                    -|-+-.....+++.+.++++.++.|.++
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i   87 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI   87 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence            45899999999999999888876555444431                    1222233346899999999999999999


Q ss_pred             EcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       222 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      ++.+ |+++..  .++...+. .|.+.+.+|.||+|||.....
T Consensus        88 ~tEt-Vskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   88 ITET-VSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR  126 (322)
T ss_pred             eeee-hhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence            9875 677765  34444443 466789999999999976644

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.10  E-value=0.0054  Score=61.67  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=69.5

Q ss_pred             EEEECCChHHHHHHHHH--hhCCCeEEEEeecCcc--ccc----------------------------------------
Q 011700          165 AVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR----------------------------------------  200 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l--~~~g~~Vtlv~~~~~~--l~~----------------------------------------  200 (479)
                      ++|||+|+.|+-+|..|  .+.|.+|.++++.+..  -..                                        
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y   81 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY   81 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence            79999999999999999  7789999999876433  100                                        


Q ss_pred             --cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          201 --LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       201 --~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                        .-...+.+.+.+.+.+.++ +..+..|.+|+..++  ...+.+.+|+++.++.|+-|.|..+.
T Consensus        82 ~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   82 CMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             EEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence              0012344445555554454 566788999987433  34578899999999999999996554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02730 carot_isom carotene isomerase

Probab=97.10  E-value=0.00055  Score=71.57  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+.+.++++|++++.+++|++|.. +++++..|.+.+|+++++|.||+++|...
T Consensus       229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRWD  286 (493)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence            56788889999999999999999999987 45777889999999999999999988643

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.09  E-value=0.00057  Score=70.85  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHc----CCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKR----GVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~----g~~~~~V~lie~~~~   41 (479)
                      +||+|||||++||+||..|.++    |++   |+|+|+++.
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~---v~vlE~~~r   40 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVE---LTLVEASDR   40 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCc---EEEEEcCCc
Confidence            7999999999999999999998    666   999999975

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.09  E-value=0.0074  Score=60.60  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=35.3

Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +.+.|++++.++++++++.+ ++. ..+.+.+| ++.+|.||+|+|...
T Consensus       159 ~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g-~~~a~~vV~A~G~~~  204 (376)
T PRK11259        159 AREAGAELLFNEPVTAIEAD-GDG-VTVTTADG-TYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHCCCEEECCCEEEEEEee-CCe-EEEEeCCC-EEEeeEEEEecCcch
Confidence            44568999999999999873 333 35677776 799999999999753

>PLN02268 probable polyamine oxidase

Probab=97.06  E-value=0.00061  Score=70.02  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      .+|+|||||.+||+||+.|.+.|++   |+|+|+.+..
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~---v~vlEa~~r~   35 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFK---VTLLESRDRI   35 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCC
Confidence            3799999999999999999998886   9999999763

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.06  E-value=0.0024  Score=60.40  Aligned_cols=75  Identities=23%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             CCeEEEEeecCccccccCCHHHHHHHHHHHHhC------CcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEE
Q 011700          185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSK------GVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMV  254 (479)
Q Consensus       185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~------GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~V  254 (479)
                      |..|---+|+.+.+|.  .-++...+...+++.      -+++.++++|..|.. ++|++..|+.-|  |  ..+.+|.|
T Consensus       122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V  198 (477)
T KOG2404|consen  122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV  198 (477)
T ss_pred             CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence            4555555688777776  345666665555442      378899999999996 788888888754  3  35788999


Q ss_pred             EEecCCCC
Q 011700          255 VVGIGIRP  262 (479)
Q Consensus       255 i~a~G~~p  262 (479)
                      ++|+|--.
T Consensus       199 VlatGGf~  206 (477)
T KOG2404|consen  199 VLATGGFG  206 (477)
T ss_pred             EEecCCcC
Confidence            99988443

>PRK07538 hypothetical protein; Provisional

Probab=97.06  E-value=0.0054  Score=62.59  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=67.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-----------------CC-----------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT-----------------------  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------~~-----------------------  203 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+..                 +.                       
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~   81 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI   81 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence            58999999999999999999999999999874321000                 00                       


Q ss_pred             --------------------HHHHHHHHHHHHh-CC-cEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEE
Q 011700          204 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVV  256 (479)
Q Consensus       204 --------------------~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~  256 (479)
                                          ..+.+.+.+.+.+ .| ++++.++++++++.++++.+  +.+.+     ++++.+|+||-
T Consensus        82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence                                0112223333333 35 56999999999987555533  33333     24899999999


Q ss_pred             ecCCCCCh
Q 011700          257 GIGIRPNT  264 (479)
Q Consensus       257 a~G~~p~~  264 (479)
                      |-|.....
T Consensus       160 ADG~~S~v  167 (413)
T PRK07538        160 ADGIHSAV  167 (413)
T ss_pred             CCCCCHHH
Confidence            99976644

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.03  E-value=0.00051  Score=66.64  Aligned_cols=66  Identities=15%  Similarity=0.310  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEc-CCCcEEEEEeCC--Cc----EEeccEEEEecCCCCChhh-hhccc
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNLRD--GN----RLPTDMVVVGIGIRPNTSL-FEGQL  271 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g~v~~v~~~~--g~----~i~~D~Vi~a~G~~p~~~l-~~~~~  271 (479)
                      ....+...++..++++++++.|.+|..+ ++++++.|++.+  +.    .+.++.||+|.|.--...| +.+++
T Consensus       195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            3455666666669999999999999552 466777777653  33    4678999999996544443 34443

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.03  E-value=0.0013  Score=72.06  Aligned_cols=34  Identities=26%  Similarity=0.183  Sum_probs=32.1

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++|+|||+|+.|+.+|..|++.|.+||++++.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            5789999999999999999999999999999975

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.00072  Score=68.41  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++|+|+|||.|||+||++|+++|++   |+|+|..+.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~   34 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDR   34 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCc
Confidence            4899999999999999999999987   999999975

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.02  E-value=0.00077  Score=71.74  Aligned_cols=66  Identities=17%  Similarity=0.284  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~  268 (479)
                      ...+...+.+..++.|+++++++.++++..+++|+++.|... +++  .+.+. .||+|+| +..|.++++
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence            455666677788899999999999999988667888877653 343  46786 5888887 666666654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.01  E-value=0.0072  Score=63.93  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus         7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~   38 (546)
T PRK11101          7 TDVIIIGGGATGAGIARDCALRGLRCILVERH   38 (546)
T ss_pred             ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence            46999999999999999999999999999976

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.99  E-value=0.0077  Score=60.97  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=69.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--cc----c-----------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----L-----------------------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~----~-----------------------------------  201 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...  ..    .                                   
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ   82 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence            579999999999999999999999999999775310  00    0                                   


Q ss_pred             -----C------------C-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEeccEEEEecCC
Q 011700          202 -----F------------T-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       202 -----~------------~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D~Vi~a~G~  260 (479)
                           +            . +.+...+.+.+.+.|+.++.+.++..+...++.. ..|.+. +|+  ++.+|+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence                 0            0 1222334455556788888887777765412222 245564 675  6899999999997


Q ss_pred             CCCh
Q 011700          261 RPNT  264 (479)
Q Consensus       261 ~p~~  264 (479)
                      ....
T Consensus       162 ~S~V  165 (390)
T TIGR02360       162 HGVS  165 (390)
T ss_pred             chhh
Confidence            7654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=96.98  E-value=0.00083  Score=70.49  Aligned_cols=64  Identities=17%  Similarity=0.281  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700          204 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       204 ~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~  268 (479)
                      ..+...+.+.+.+ .|+++++++.++++.. +++++..|... +++  ++.++ .||+|+| +..|.++++
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~-~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~  242 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVV-EDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA  242 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEe-cCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence            3444555555544 5999999999999876 46777777543 343  57786 6888887 445555443

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.97  E-value=0.00083  Score=69.66  Aligned_cols=51  Identities=18%  Similarity=0.299  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      .+.+.+.+.+++  ++++++++|++|+..++ . ..|.+.+|+++.+|.||+++.
T Consensus       227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~-~-~~v~~~~g~~~~ad~VI~a~p  277 (463)
T PRK12416        227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGD-R-YEISFANHESIQADYVVLAAP  277 (463)
T ss_pred             HHHHHHHHhccc--ccEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEEECCC
Confidence            445555555543  57999999999997443 3 357777888899999999985

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.94  E-value=0.0091  Score=51.97  Aligned_cols=41  Identities=24%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             CcEEE-cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          218 GVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       218 GV~i~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      ||++. ...+|..++..+++  ..+.+.+|..+.+|.|++|+|.
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence            54443 34578888885555  3678899999999999999995

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.94  E-value=0.0096  Score=60.81  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN  263 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~  263 (479)
                      .+.+.+.+.++++|++|+.++.++++.. +++++..+...   +|+  ++.++.||+|+|--..
T Consensus       142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  142 ALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4566777888889999999999999988 57788888776   454  5789999999997655

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.90  E-value=0.011  Score=59.74  Aligned_cols=98  Identities=21%  Similarity=0.381  Sum_probs=67.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec-Ccc--------------c------------------cc----------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC--------------M------------------AR----------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~--------------l------------------~~----------  200 (479)
                      .|+|||+|+.|+-+|..|++.|.+|.++++. +..              +                  +.          
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS   81 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence            4899999999999999999999999999876 210              0                  00          


Q ss_pred             ---c---CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC------C--cEEeccEEEEecCCCCCh
Q 011700          201 ---L---FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       201 ---~---~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~Vi~a~G~~p~~  264 (479)
                         .   ++ ..+.+.+.+...+.|++++.+ .++++..++ +.+ .+.+.+      +  .++.+|.||.|.|.....
T Consensus        82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence               0   01 122234555566779999765 588887633 333 344432      2  479999999999976543

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=96.89  E-value=0.015  Score=57.84  Aligned_cols=98  Identities=18%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cccCCHH------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPK------------------------------  205 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~------------------------------  205 (479)
                      .|+|||+|+.|+-+|..|++. .+|+++++.+...        ...+.+.                              
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            589999999999999999998 9999999775210        0000000                              


Q ss_pred             --------------H-HHHHHHH---HHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCCCCCh
Q 011700          206 --------------I-ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       206 --------------~-~~~~~~~---l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~~p~~  264 (479)
                                    + +..+.+.   ..+.|++++.++.+++++..+++ + .+.+ .+|+  ++.+|.||.|.|.....
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANSMV  159 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence                          0 1111122   23468999999999999874444 2 3443 4664  68999999999987654

>PRK02106 choline dehydrogenase; Validated

Probab=96.88  E-value=0.0011  Score=70.34  Aligned_cols=61  Identities=13%  Similarity=0.212  Sum_probs=42.6

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC----cEEeccEEEEecCCCCChhhh-hccc
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLF-EGQL  271 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~Vi~a~G~~p~~~l~-~~~~  271 (479)
                      +....++.++++++++.|.+|..+ +++++.|+..+.    ..+.++.||+|.|.--...++ .+++
T Consensus       207 l~~a~~~~nl~i~~~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI  272 (560)
T PRK02106        207 LDPALKRPNLTIVTHALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI  272 (560)
T ss_pred             hccccCCCCcEEEcCCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence            333344667999999999999874 566777776443    246799999999966555543 4443

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=96.87  E-value=0.0068  Score=59.72  Aligned_cols=103  Identities=24%  Similarity=0.299  Sum_probs=71.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC----------CHHHHHHHHHHHHhC--CcEEEcCCceE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSK--GVKFVKGTVLS  228 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~--GV~i~~~~~v~  228 (479)
                      +.++|+|+|+|..|+-+...|...-.+|+++.+++.++-..+          -..+.+-+....+..  +++++.. +-.
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~  132 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT  132 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence            468999999999999999999888899999999887643211          245666666666554  5665543 345


Q ss_pred             EEEEcCCCcEE-EEEeCCC----cEEeccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVV-AVNLRDG----NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~-~v~~~~g----~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .++++ ..++. ...+.++    ..+.+|.+++|+|..|++.
T Consensus       133 ~iDp~-~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF  173 (491)
T KOG2495|consen  133 KIDPD-NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF  173 (491)
T ss_pred             eeccc-ccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence            66652 22221 1223344    3688999999999999885

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.85  E-value=0.014  Score=59.29  Aligned_cols=100  Identities=17%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc------------c---------------------c---------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R---------------------L---------  201 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------~---------------------~---------  201 (479)
                      +|+|||+|+.|+-+|..|++.|.+|.++++.+.+..            .                     .         
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~   81 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL   81 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence            589999999999999999999999999987632100            0                     0         


Q ss_pred             --------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CCCcEEEEEe--CC-----C--cEEeccEEEEecCCCC
Q 011700          202 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       202 --------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~Vi~a~G~~p  262 (479)
                              ++ ..+.+.+.+...+.|++++.++ +..++.. ..+....+++  .+     |  .++.++.||.|.|..+
T Consensus        82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence                    00 1112234455667899998775 6666431 1122223332  22     3  4799999999999876


Q ss_pred             Ch
Q 011700          263 NT  264 (479)
Q Consensus       263 ~~  264 (479)
                      ..
T Consensus       161 ~v  162 (398)
T TIGR02028       161 RV  162 (398)
T ss_pred             HH
Confidence            54

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=96.82  E-value=0.0013  Score=68.37  Aligned_cols=59  Identities=15%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCCC
Q 011700          204 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPN  263 (479)
Q Consensus       204 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~  263 (479)
                      ..+.+.+.+.+++.| ++++++++|++++.++++.+ .+.+   .+|+  ++.++.||+|.|....
T Consensus       183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            456777778888876 99999999999987555533 2332   3453  6999999999997643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.81  E-value=0.0014  Score=66.14  Aligned_cols=34  Identities=29%  Similarity=0.543  Sum_probs=30.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||+|||||++|+.||..|+++|.+   |+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence            3799999999999999999999988   999997653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.80  E-value=0.015  Score=60.21  Aligned_cols=97  Identities=27%  Similarity=0.402  Sum_probs=65.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------cc---------------cCC---------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------AR---------------LFT---------  203 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~---------------~~~---------  203 (479)
                      ..|+|||+|..|+-+|..+++.|.+|.++++.+..-               ..               ..+         
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            369999999999999999999999999987642100               00               001         


Q ss_pred             --------------------------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC
Q 011700          204 --------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD  245 (479)
Q Consensus       204 --------------------------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~  245 (479)
                                                            ..+.+.+.+.+++.||+++.+ .+..+.. +++++..+.. +
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~  158 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D  158 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence                                                  123344445555667777765 5666654 4566666655 5


Q ss_pred             CcEEeccEEEEecCCCC
Q 011700          246 GNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       246 g~~i~~D~Vi~a~G~~p  262 (479)
                      ++.+.++.||+|||-..
T Consensus       159 g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        159 GELLKFDATVIATGGFS  175 (466)
T ss_pred             CEEEEeCeEEECCCcCc
Confidence            56789999999999654

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=96.78  E-value=0.0062  Score=64.04  Aligned_cols=102  Identities=19%  Similarity=0.341  Sum_probs=76.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC---CCeEEEEeecCcc------ccccCC-----HHHHHHHHHHHHhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      ..+++|||.|..|..+..++.+.   -.++|++...+++      +.+.+.     +++.-.-.++.+++||+++++.++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v   82 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV   82 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence            36899999999999888887773   4678888765542      222222     233333457889999999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      ..|..  +.+  .|..++|.++.+|.+++|||..|.....
T Consensus        83 ~~idr--~~k--~V~t~~g~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          83 IQIDR--ANK--VVTTDAGRTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             EEecc--Ccc--eEEccCCcEeecceeEEecCccccccCC
Confidence            99976  332  5778899999999999999999987643

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=96.78  E-value=0.019  Score=61.71  Aligned_cols=33  Identities=27%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            357999999999999999999999999999875

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.78  E-value=0.0018  Score=64.66  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|||||||.|||+||.+|.++|..+  ++|+|.+..
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dR   56 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDR   56 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccc
Confidence            468999999999999999999888876  999999875

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.74  E-value=0.0018  Score=68.68  Aligned_cols=65  Identities=23%  Similarity=0.290  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEecc-EEEEecC-CCCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~Vi~a~G-~~p~~~l~~  268 (479)
                      ...+...+.+.+++.|+++++++.++++.. +++++..|... +++  ++.++ .||+|+| +.-|.++.+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence            566777788888899999999999999987 46788777663 343  46774 6888887 555666554

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.74  E-value=0.004  Score=62.18  Aligned_cols=71  Identities=21%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHH------HHHHHHHHHHhCCcEEEcCCceEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPK------IASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~------~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      .++++|||||..|++.|..|++.|.+|+++++.+.+-.+      .|+..      ++-.+.+......|++++.++|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            578999999999999999999999999999999875433      12221      223344445567899999999999


Q ss_pred             EEE
Q 011700          230 FDV  232 (479)
Q Consensus       230 i~~  232 (479)
                      +..
T Consensus       204 v~G  206 (622)
T COG1148         204 VSG  206 (622)
T ss_pred             ecc
Confidence            876

>PLN02676 polyamine oxidase

Probab=96.71  E-value=0.0021  Score=66.85  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||||++||+||.+|++.|.+  +|+|+|+...
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~   61 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDR   61 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCC
Confidence            58999999999999999999998863  3899999865

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.71  E-value=0.0053  Score=62.42  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc------------------------------------------cccc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH------------------------------------------CMAR  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~------------------------------------------~l~~  200 (479)
                      -.|+|||+|..|+|.|.+.++.|.++.+++....                                          +|..
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            3699999999999999999999999988875411                                          0110


Q ss_pred             cC-----------CHH-HHHHHHHHHH-hCCcEEEcCCceEEEEEcCCC-cEEEEEeCCCcEEeccEEEEecCC
Q 011700          201 LF-----------TPK-IASYYEEYYK-SKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       201 ~~-----------~~~-~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      .-           |.. ..+.+++.++ ..++.++.+. |..+.. +++ ++..|.+.+|..+.|+.||++||.
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT  156 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT  156 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence            00           111 2233344443 3467766554 566655 344 588999999999999999999995

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.012  Score=56.39  Aligned_cols=101  Identities=23%  Similarity=0.319  Sum_probs=78.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cc---------c--ccccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AH---------C--MARLFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~---------~--l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .+-.|+|||||+.|-..|-..++.|.+.-++..+  ..         +  .+....++++..++++.++..|+++...+.
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra  289 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA  289 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence            4668999999999999988888877665444211  00         1  122246889999999999999999998888


Q ss_pred             EEEEEc-CCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          228 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       228 ~~i~~~-~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      +++++. ..+....|++.+|-.+.+..+|++||.+
T Consensus       290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr  324 (520)
T COG3634         290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR  324 (520)
T ss_pred             hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence            888873 2355678999999999999999999965

>PRK07804 L-aspartate oxidase; Provisional

Probab=96.65  E-value=0.023  Score=60.06  Aligned_cols=98  Identities=20%  Similarity=0.267  Sum_probs=69.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------c---------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R---------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------~---------------------------  200 (479)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.+....               .                           
T Consensus        17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~   96 (541)
T PRK07804         17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV   96 (541)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4699999999999999999999999999886521100               0                           


Q ss_pred             ---------------cC-----------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700          201 ---------------LF-----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       201 ---------------~~-----------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g  236 (479)
                                     .|                             ...+.+.+.+.+++.||+++.++.+.++..++++
T Consensus        97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g  176 (541)
T PRK07804         97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG  176 (541)
T ss_pred             HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence                           00                             1223444555566678888888888888764456


Q ss_pred             cEEEEEeC-------CC-cEEeccEEEEecCC
Q 011700          237 KVVAVNLR-------DG-NRLPTDMVVVGIGI  260 (479)
Q Consensus       237 ~v~~v~~~-------~g-~~i~~D~Vi~a~G~  260 (479)
                      ++..+...       ++ ..+.++.||+|+|-
T Consensus       177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG  208 (541)
T PRK07804        177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG  208 (541)
T ss_pred             eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence            77666543       22 36889999999995

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=96.65  E-value=0.0033  Score=61.00  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..||+|||||.+|-+.|..|+|.|.+   |.|||++-.
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl~   79 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRR---VHVIERDLS   79 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcE---EEEEecccc
Confidence            57999999999999999999999887   999999854

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=96.63  E-value=0.025  Score=54.23  Aligned_cols=57  Identities=21%  Similarity=0.334  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEE-cCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ...++..+++.|+.|+.+..+..++- ++++..+.|.+.+|..+.++.+|+++|.--+
T Consensus       156 lk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~  213 (399)
T KOG2820|consen  156 LKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN  213 (399)
T ss_pred             HHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence            34566778888999999999888763 3456677899999999999999999996433

>PRK12839 hypothetical protein; Provisional

Probab=96.60  E-value=0.0026  Score=67.55  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc-EE-eccEEEEecC-CCCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN-RL-PTDMVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~-~i-~~D~Vi~a~G-~~p~~~l~~  268 (479)
                      +..+...+.+..++.|++++.++.++++..++++++..|...  +++ .+ .++.||+|+| +.-|.++..
T Consensus       213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~  283 (572)
T PRK12839        213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK  283 (572)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence            456667777778889999999999999976456788887653  343 23 4588999987 444555443

>PLN02529 lysine-specific histone demethylase 1

Probab=96.59  E-value=0.0026  Score=68.72  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||||++|++||..|+++|++   |+|+|+.+.
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~  194 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNR  194 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCcc
Confidence            57999999999999999999999997   999999865

>PLN02985 squalene monooxygenase

Probab=96.57  E-value=0.031  Score=58.56  Aligned_cols=102  Identities=20%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+....+                                         
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~  122 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK  122 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence            457999999999999999999999999999976210000                                         


Q ss_pred             ----cC-----------------CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEe--CCCcE--EeccEE
Q 011700          201 ----LF-----------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNL--RDGNR--LPTDMV  254 (479)
Q Consensus       201 ----~~-----------------~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g~~--i~~D~V  254 (479)
                          .+                 ..++.+.+.+.+++. +|+++.++ +.++.. +++.+..|++  .+|++  +.+|+|
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gt-vv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV  200 (514)
T PLN02985        123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGT-VKSLIE-EKGVIKGVTYKNSAGEETTALAPLT  200 (514)
T ss_pred             EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeee-EEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence                00                 012233444444443 68888664 555554 3454444554  46653  568999


Q ss_pred             EEecCCCCChh
Q 011700          255 VVGIGIRPNTS  265 (479)
Q Consensus       255 i~a~G~~p~~~  265 (479)
                      |.|-|......
T Consensus       201 VgADG~~S~vR  211 (514)
T PLN02985        201 VVCDGCYSNLR  211 (514)
T ss_pred             EECCCCchHHH
Confidence            99999876653

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.53  E-value=0.031  Score=59.59  Aligned_cols=50  Identities=22%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~  261 (479)
                      .+.+++.||+++.++.++++.. +++++..+..   .+|+  .+.++.||+|+|-.
T Consensus       136 ~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~  190 (566)
T TIGR01812       136 YEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY  190 (566)
T ss_pred             HHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence            3345566899999999999876 4677766553   3554  58899999999953

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.52  E-value=0.0029  Score=67.00  Aligned_cols=65  Identities=15%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CCc--EEec-cEEEEecC-CCCChhhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPT-DMVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~-D~Vi~a~G-~~p~~~l~~  268 (479)
                      ...+...+.+.+++.||++++++.++++.. +++++..|... +++  .+.+ ..||+|+| +.-|.++.+
T Consensus       216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence            577888888888999999999999999886 46888777543 343  3555 57888887 555555443

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.50  E-value=0.033  Score=57.39  Aligned_cols=101  Identities=21%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-----------------c----------------cc--------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-----------------A----------------RL--------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----------------~----------------~~--------  201 (479)
                      -.|+|||+|+.|.-+|..|++.|.+|.++++.+...                 +                ..        
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~~  119 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGKT  119 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEeccc
Confidence            479999999999999999999999999998763210                 0                00        


Q ss_pred             ---------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC-CcEEEEEeCC-------C--cEEeccEEEEecCCC
Q 011700          202 ---------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRD-------G--NRLPTDMVVVGIGIR  261 (479)
Q Consensus       202 ---------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~~-------g--~~i~~D~Vi~a~G~~  261 (479)
                               ++ ..+.+.+.+...+.|++++.+ .+.+++...+ +....+.+.+       |  .++.+|.||-|.|..
T Consensus       120 ~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~  198 (450)
T PLN00093        120 LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGAN  198 (450)
T ss_pred             CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcc
Confidence                     00 112234455566779999866 4666653211 1112343321       3  479999999999976


Q ss_pred             CCh
Q 011700          262 PNT  264 (479)
Q Consensus       262 p~~  264 (479)
                      ...
T Consensus       199 S~v  201 (450)
T PLN00093        199 SRV  201 (450)
T ss_pred             hHH
Confidence            543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.46  E-value=0.017  Score=53.73  Aligned_cols=100  Identities=20%  Similarity=0.295  Sum_probs=66.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc---------C----------C---------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL---------F----------T---------------------  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~---------~----------~---------------------  203 (479)
                      +++|||+|..|+-+|..|+..|.+||+++++.-+-.+.         |          +                     
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~   82 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP   82 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence            68999999999999999999999999999872211110         0          1                     


Q ss_pred             ----------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCC
Q 011700          204 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI  260 (479)
Q Consensus       204 ----------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~  260 (479)
                                            +.|+.. .+.| ....+++++++|+++...  ++...+..++| ....+|.|++++..
T Consensus        83 ~~~~~~~~~~~~~~d~~pyvg~pgmsal-ak~L-AtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PA  158 (331)
T COG3380          83 AVWTFTGDGSPPRGDEDPYVGEPGMSAL-AKFL-ATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPA  158 (331)
T ss_pred             cccccccCCCCCCCCCCccccCcchHHH-HHHH-hccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCC
Confidence                                  112222 1222 234677888888888763  33456777665 46789999999875


Q ss_pred             CCChhhh
Q 011700          261 RPNTSLF  267 (479)
Q Consensus       261 ~p~~~l~  267 (479)
                      --...|+
T Consensus       159 PQ~~~LL  165 (331)
T COG3380         159 PQTATLL  165 (331)
T ss_pred             Ccchhhc
Confidence            4333443

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.46  E-value=0.0031  Score=72.45  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|.||++||.++++.|.+   |+|+||.+.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~  443 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK  443 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence            58999999999999999999999987   999999865

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.43  E-value=0.032  Score=59.78  Aligned_cols=35  Identities=20%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      +..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            46899999999999999999999999999999864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.40  E-value=0.038  Score=56.77  Aligned_cols=64  Identities=14%  Similarity=0.205  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcEEEEEeCC-CcEEeccEEEEecC-CCCChhhhh
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRD-GNRLPTDMVVVGIG-IRPNTSLFE  268 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v~~v~~~~-g~~i~~D~Vi~a~G-~~p~~~l~~  268 (479)
                      .+.+.+.+.+++.|++++++++++++..++ ++++..+...+ +.++.++.||+|+| +..|.+++.
T Consensus       124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence            345566666788899999999999998643 56676666543 35789999999999 556666554

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02462 pyranose_ox pyranose oxidase

Probab=96.37  E-value=0.0037  Score=65.32  Aligned_cols=56  Identities=14%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCC--CcEEEEEeC---CCc--EEeccEEEEecCCCCChhhh
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSN--GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~--g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      +.++..++++++++.|.+|+.+++  +++..+...   +|+  ++.|+.||+|.|.--+..|+
T Consensus       222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL  284 (544)
T TIGR02462       222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL  284 (544)
T ss_pred             hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence            334455699999999999987544  356666543   343  58999999999977776654

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.35  E-value=0.0042  Score=67.61  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||||++|++||..|.+.|++   |+|+|+...
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r  272 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRAR  272 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecccc
Confidence            47899999999999999999999887   999999865

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.35  E-value=0.0044  Score=60.96  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.+|||||||.+|+++|..|.|.|++   |+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence            36899999999999999999999998   899998654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.31  E-value=0.045  Score=58.97  Aligned_cols=104  Identities=21%  Similarity=0.341  Sum_probs=71.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccc----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~----------------------------------------  200 (479)
                      .-.|+|||+|+.|+-+|..|++. |.+|+++++.+.....                                        
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~  111 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP  111 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence            35799999999999999999995 9999999976221000                                        


Q ss_pred             -------------------------cCCH-HHHHHHHHHHHhCC--cEEEcCCceEEEEEcCCC-cEEEEEeC------C
Q 011700          201 -------------------------LFTP-KIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D  245 (479)
Q Consensus       201 -------------------------~~~~-~~~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~g-~v~~v~~~------~  245 (479)
                                               .+.+ .+.+.+.+.+++.|  +++..++++++++.++++ ..+.+.+.      +
T Consensus       112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~  191 (634)
T PRK08294        112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE  191 (634)
T ss_pred             ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence                                     0001 13344555566655  577889999999864332 22235553      3


Q ss_pred             C--cEEeccEEEEecCCCCChh
Q 011700          246 G--NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       246 g--~~i~~D~Vi~a~G~~p~~~  265 (479)
                      |  +++.+|+||-|=|.+....
T Consensus       192 g~~~tv~A~~lVGaDGa~S~VR  213 (634)
T PRK08294        192 GEEETVRAKYVVGCDGARSRVR  213 (634)
T ss_pred             CceEEEEeCEEEECCCCchHHH
Confidence            5  5799999999999876553

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.29  E-value=0.0075  Score=59.45  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      .++|+|+|||.+||++|++|++++. +..|+|+|..+..
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRV   48 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCcc
Confidence            3799999999999999999999765 4568889999763

>PRK08275 putative oxidoreductase; Provisional

Probab=96.26  E-value=0.061  Score=57.12  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRP  262 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p  262 (479)
                      .+.+.+.+++.||+++.++.+.++..++++++..+..   .+|+  .+.++.||+|+|-..
T Consensus       140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            3445555667889999999999998743677766653   3554  578999999999654

>PRK06175 L-aspartate oxidase; Provisional

Probab=96.24  E-value=0.051  Score=55.77  Aligned_cols=55  Identities=11%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEE-eCCCc--EEeccEEEEecCCC
Q 011700          206 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       206 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~Vi~a~G~~  261 (479)
                      +.+.+.+.+++ .||+++.++.+.++.. +++++..+. ..++.  .+.++.||+|+|--
T Consensus       130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI  188 (433)
T ss_pred             HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence            34445555544 5899999999999876 456666644 33444  58899999999963

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.23  E-value=0.052  Score=56.91  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~   38 (502)
T PRK13369          7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD   38 (502)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            46999999999999999999999999999977

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=96.23  E-value=0.0068  Score=57.59  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=32.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      +|++|||+|.+|+..|..|+++|.+   |.|||+.++.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HI   36 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHI   36 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccC
Confidence            8999999999999999999998987   9999999763

>TIGR00551 nadB L-aspartate oxidase

Probab=96.21  E-value=0.044  Score=57.24  Aligned_cols=56  Identities=16%  Similarity=0.234  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCC-C--cEEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~Vi~a~G~~p  262 (479)
                      +.+.+.+.+++ .||+++.++.+.++.. +++.+..+...+ +  ..+.++.||+|+|-..
T Consensus       130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       130 VITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             HHHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            34445555655 5899999999999876 456666565543 3  3689999999999654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.20  E-value=0.059  Score=57.71  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~  260 (479)
                      .+.+.+++.||+++.++.+.++..++++++..+..   .+|+  .+.++.||+|||-
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  210 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG  210 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            34445566788999998899887644477877764   3554  6789999999994

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.20  E-value=0.05  Score=57.84  Aligned_cols=51  Identities=22%  Similarity=0.091  Sum_probs=37.3

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~  260 (479)
                      .+.+.+++.||+++.++.++++.. ++|++..+...   +++  .+.++.||+|||-
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  196 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG  196 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence            344445556888888888888886 47888877654   332  5789999999993

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.14  E-value=0.06  Score=57.67  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=33.1

Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~  260 (479)
                      ||+++.++.+.++..++++++..+...   +++  .+.++.||+|||-
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG  194 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG  194 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence            788888888888876445677777653   343  5789999999985

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=96.12  E-value=0.071  Score=57.27  Aligned_cols=32  Identities=28%  Similarity=0.299  Sum_probs=29.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus        30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            36999999999999999999999999998865

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.12  E-value=0.063  Score=57.86  Aligned_cols=47  Identities=26%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCC
Q 011700          213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       213 ~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~  260 (479)
                      .+++.||+++.++.+.++.. +++++..+...   +|+  .+.++.||+|||-
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            45567899999999998876 46777777654   453  5889999999995

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.09  E-value=0.011  Score=43.49  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             EECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       167 VIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      |||+|..|+-+|..|++.|.+|+++++.+++-.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG   33 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG   33 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence            799999999999999999999999999987643

...

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=96.08  E-value=0.066  Score=56.16  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~   38 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD   38 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999999999999999999999999976

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.025  Score=58.45  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|+|+|.+|+.+|..|.+.|.+|+++++.+.       +.+.+ ..+.+.+.|++++.+....+           
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~-~~~~l~~~~~~~~~~~~~~~-----------   64 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKE-ALEELGELGIELVLGEYPEE-----------   64 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHH-HHHHHHhcCCEEEeCCcchh-----------
Confidence            468999999999999999999999999999977531       22222 23446667887765543210           


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                            ..-.+|.|+.++|..|+.+.+
T Consensus        65 ------~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106         65 ------FLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             ------HhhcCCEEEECCCCCCCCHHH
Confidence                  011479999999998887754

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.07  E-value=0.0056  Score=64.54  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=33.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |..++|+||||+|+||...|.+|++.|.+   |+|+|..+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~---VllLEaG~~   41 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLS---VLVLEAGGP   41 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCe---EEEEeCCCC
Confidence            34579999999999999999999977776   999999964

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.06  E-value=0.086  Score=56.57  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhC--CCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-.|..+++.  |.+|.++++.
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~   45 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA   45 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3699999999999999999998  9999999865

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.98  E-value=0.089  Score=56.13  Aligned_cols=53  Identities=13%  Similarity=0.148  Sum_probs=38.7

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~  261 (479)
                      +.+.+.+++.||+++.++.+.++.. +++++..+..   .+++  .+.++.||+|+|--
T Consensus       139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~  196 (575)
T PRK05945        139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY  196 (575)
T ss_pred             HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence            3455556667899999999999876 4676665542   3554  58899999999964

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.97  E-value=0.096  Score=55.96  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=36.6

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~  260 (479)
                      +.+..++.||+++.++.+.++..++++++..+..   .+|+  .+.++.||+|||-
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            3334455678888888888887644678877764   3454  5789999999994

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=95.88  E-value=0.039  Score=55.22  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=29.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||||..|+|.|.+.++.|.+.++++.+
T Consensus        29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            47999999999999999999999999888765

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.83  E-value=0.11  Score=55.09  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~  261 (479)
                      ..+.+.+++.||+++.++.+.++..++++++..+..   .+++  .+.++.||+|||--
T Consensus       138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~  196 (543)
T PRK06263        138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA  196 (543)
T ss_pred             HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence            334445566789999999999987644444666543   4554  58899999999953

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=95.80  E-value=0.012  Score=57.61  Aligned_cols=101  Identities=17%  Similarity=0.256  Sum_probs=66.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCC-CCCcE-EEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGV-PPGEL-CIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY   81 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V-~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (479)
                      +..+-|||+|.-|-..|..|.|.-. ...+| -|++..-    +   +.         .-+|.+.       .....+.+
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~----n---m~---------kiLPeyl-------s~wt~eki  403 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY----N---ME---------KILPEYL-------SQWTIEKI  403 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC----C---hh---------hhhHHHH-------HHHHHHHH
Confidence            4679999999999999999987522 12233 3443331    1   00         0112110       01223446


Q ss_pred             HHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           82 NEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      ++.||.++.+..|.++....+  .+.+.+|.++..|.+|+|+|..|+.
T Consensus       404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence            678999999988887765544  4567899999999999999999864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.75  E-value=0.11  Score=56.02  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus         9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~   40 (626)
T PRK07803          9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS   40 (626)
T ss_pred             ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence            36999999999999999999999999998765

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.73  E-value=0.15  Score=54.48  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-.|..+++.|.+|++++..
T Consensus        13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            46999999999999999999999999998874

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.67  E-value=0.13  Score=55.02  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      -.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus        12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~   45 (584)
T PRK12835         12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH   45 (584)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence            4699999999999999999999999999987643

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=95.67  E-value=0.093  Score=53.37  Aligned_cols=86  Identities=22%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHhhCCCeE------EEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC--C-cEEEEE
Q 011700          172 YIGMECAASLVINKINV------TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN--G-KVVAVN  242 (479)
Q Consensus       172 ~~g~E~A~~l~~~g~~V------tlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~--g-~v~~v~  242 (479)
                      .+++|+-..|.++=.++      .-+.+..  .  ..-+.+..-+.++|+++||+|..+++|+.++-+.+  . .+..+.
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~--Y--NQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~  248 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTK--Y--NQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIH  248 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCccccccCc--c--ccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEE
Confidence            35778877777652221      1111111  0  11345677789999999999999999999876322  2 233343


Q ss_pred             e-CCCc--EE---eccEEEEecCCC
Q 011700          243 L-RDGN--RL---PTDMVVVGIGIR  261 (479)
Q Consensus       243 ~-~~g~--~i---~~D~Vi~a~G~~  261 (479)
                      + .+|.  ++   +-|+|++..|.-
T Consensus       249 ~~~~g~~~~i~l~~~DlV~vT~GS~  273 (500)
T PF06100_consen  249 IEQDGKEETIDLGPDDLVFVTNGSM  273 (500)
T ss_pred             EEcCCCeeEEEeCCCCEEEEECCcc
Confidence            3 3442  23   468888888854

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=95.66  E-value=0.13  Score=55.31  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-.|..+++.|.+|.+++..
T Consensus        51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            36999999999999999999999999998765

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.61  E-value=0.1  Score=52.68  Aligned_cols=102  Identities=21%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC---CeEEEEeecCccc-------------------------cc--------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCM-------------------------AR--------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~~~~l-------------------------~~--------------  200 (479)
                      .+|+|||+|++|+.+|..|.+.-   ..++++++.+.+.                         +.              
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~   81 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ   81 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence            47999999999999999998751   2388888763321                         00              


Q ss_pred             -------------------cCCHHHHHHHHHHHHhCC---cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          201 -------------------LFTPKIASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       201 -------------------~~~~~~~~~~~~~l~~~G---V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                                         .|...+.+.+...+++.-   |.++.. +.+.+...+++....+...+|....||.+|++|
T Consensus        82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat  160 (474)
T COG4529          82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT  160 (474)
T ss_pred             ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence                               000112222222232222   444433 334444433455556777899999999999999


Q ss_pred             CCCCChh
Q 011700          259 GIRPNTS  265 (479)
Q Consensus       259 G~~p~~~  265 (479)
                      |..+...
T Consensus       161 gh~~~~~  167 (474)
T COG4529         161 GHSAPPA  167 (474)
T ss_pred             cCCCCCc
Confidence            9766543

>TIGR01810 betA choline dehydrogenase

Probab=95.60  E-value=0.01  Score=62.67  Aligned_cols=58  Identities=12%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-c---EEeccEEEEecCCCCChhhh
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-N---RLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~---~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      .+....++.+++++.++.|.+|.. ++++++.|++.++ +   .+.++.||+|.|.--...++
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL  260 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL  260 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence            344444467899999999999987 4667778877543 2   35899999999974444433

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.58  E-value=0.034  Score=61.35  Aligned_cols=33  Identities=30%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~  196 (479)
                      +|+|||+|+.|+-+|..|++.  |.+|+++++.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999998  899999998764

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.56  E-value=0.15  Score=54.45  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=27.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCC---CeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVINK---INVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~  194 (479)
                      .|+|||+|..|+-.|..+++.|   .+|.++++.
T Consensus         7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~   40 (577)
T PRK06069          7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT   40 (577)
T ss_pred             CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence            5999999999999999999988   799998864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.53  E-value=0.19  Score=53.63  Aligned_cols=57  Identities=16%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCC---CcEEEEEe---CCCc--EEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p  262 (479)
                      +.+.+.+.+++.||+++.++.+.++..+++   +++..+..   .+++  .+.++.||+|||-..
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            334455556678899999999999876332   67776654   3454  578999999999643

>PLN03000 amine oxidase

Probab=95.50  E-value=0.017  Score=63.11  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||||++|+.||..|.+.|++   |+|+|+.+.
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~r  218 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKR  218 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCc
Confidence            47999999999999999999999887   999999875

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.44  E-value=0.018  Score=53.08  Aligned_cols=94  Identities=17%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcC--------Cc---eEEE
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG--------TV---LSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~--------~~---v~~i  230 (479)
                      +.+|||||..|+.||..|+.+  ..++.++..++-+-.-    .--+.+.+++++..|+=...        .-   |..+
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~   76 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTW   76 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhh
Confidence            368999999999999999876  4577777766433221    11122333343333321100        11   2222


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ..    .-..+.+.+|.++.++.+++++|.+|-..
T Consensus        77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq  107 (334)
T KOG2755|consen   77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ  107 (334)
T ss_pred             cc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence            21    11357889999999999999999999653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.42  E-value=0.057  Score=46.49  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700          165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  244 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~  244 (479)
                      ++|+|+|.+|.-+|..|.+.|.+|+++.|.+ .             .+.+++.|+.+.....-..+..       .....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~-------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~   59 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-R-------------LEAIKEQGLTITGPDGDETVQP-------PIVIS   59 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-H-------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-c-------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence            6899999999999999999999999998763 1             1236778998887652111211       11222


Q ss_pred             CC--cEEeccEEEEecCCCCChhhhh
Q 011700          245 DG--NRLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       245 ~g--~~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                      +.  ..-++|.|++++-.......++
T Consensus        60 ~~~~~~~~~D~viv~vKa~~~~~~l~   85 (151)
T PF02558_consen   60 APSADAGPYDLVIVAVKAYQLEQALQ   85 (151)
T ss_dssp             SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred             cchhccCCCcEEEEEecccchHHHHH
Confidence            21  2456899999976555444443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02785 Protein HOTHEAD

Probab=95.41  E-value=0.017  Score=61.45  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=30.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||+||||||.||+.+|.+|++ ..+   |+|||+++.
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence            5999999999999999999998 454   999999863

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.39  E-value=0.12  Score=54.39  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=26.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ..|+|||+|..|+-.|..+.+ |.+|.++++.
T Consensus         4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~   34 (510)
T PRK08071          4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK   34 (510)
T ss_pred             cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence            468999999999999988876 8889888765

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=95.39  E-value=0.004  Score=55.36  Aligned_cols=35  Identities=34%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .||||||+|.+||+||+..+++ .++.+|++||..-
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~-rPdlkvaIIE~SV  111 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKN-RPDLKVAIIESSV  111 (328)
T ss_pred             cceEEECCCccccceeeeeecc-CCCceEEEEEeee
Confidence            5999999999999999999874 4567799999874

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.32  E-value=0.11  Score=51.31  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .+|+|||||..|+-+|.+|.+.|.+|.+++.+..
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            5899999999999999999999999999987643

>PLN02976 amine oxidase

Probab=95.26  E-value=0.022  Score=64.94  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++|+|||||++|+++|..|.+.|++   |+|+|+.+.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~  727 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSR  727 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccC
Confidence            47899999999999999999999886   999999864

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.24  E-value=0.03  Score=57.87  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.++++|||+|..|+.+|..|++.|++   |+++|++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence            457899999999999999999999987   89998874

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.23  E-value=0.21  Score=53.42  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=29.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      +..|+|||+|..|+-.|..+++.|.+|.++++.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~   35 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV   35 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence            347999999999999999999999999999853

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=95.22  E-value=0.026  Score=56.93  Aligned_cols=35  Identities=26%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      ++|+|||+|++|+|+|..|++.|.+|+++++.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            57999999999999999999999999999976554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
3fg2_P	404	Crystal Structure Of Ferredoxin Reductase For The C		2e-39
1q1r_A	431	Crystal Structure Of Putidaredoxin Reductase From P		8e-39
3lb8_A	436	Crystal Structure Of The Covalent Putidaredoxin Red		3e-38
3lxd_A	415	Crystal Structure Of Ferredoxin Reductase Arr From		2e-34
3gd3_A	535	Crystal Structure Of A Naturally Folded Murine Apop		8e-26
3gd4_A	511	Crystal Structure Of The Reduced, Nad-Bound Form Of		9e-26
1gv4_A	528	Murine Apoptosis-Inducing Factor (Aif) Length = 528		9e-26
4fdc_B	514	Crystal Structure Of The E493v Mutant Of Human Apop		2e-25
1m6i_A	493	Crystal Structure Of Apoptosis Inducing Factor (Aif		2e-25
2gr3_A	408	Crystal Structure Of Ferredoxin Reductase, Bpha4 (O		9e-25
1d7y_A	408	Crystal Structure Of Nadh-Dependent Ferredoxin Redu		1e-24
3ef6_A	410	Crystal Structure Of Toluene 2,3-Dioxygenase Reduct		1e-20
3cgc_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		4e-17
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		2e-16
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-16
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		2e-16
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-16
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		2e-16
3cgb_A	480	Pyridine Nucleotide Complexes With Bacillus Anthrac		7e-16
2cdu_A	452	The Crystal Structure Of Water-Forming Nad(P)h Oxid		8e-16
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		1e-15
2v3a_A	384	Crystal Structure Of Rubredoxin Reductase From Pseu		4e-15
3ntd_A	565	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-15
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		2e-14
3nt6_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		6e-14
3nta_A	574	Structure Of The Shewanella Loihica Pv-4 Nadh-Depen		8e-14
1xhc_A	367	Nadh Oxidase /nitrite Reductase From Pyrococcus Fur		3e-13
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		1e-12
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		1e-12
3iwa_A	472	Crystal Structure Of A Fad-Dependent Pyridine Nucle		2e-11
1mo9_A	523	Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct		2e-10
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		3e-10
1lvl_A	458	The Refined Structure Of Pseudomonas Putida Lipoami		4e-09
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		6e-08
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		6e-08
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		6e-08
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		6e-08
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		7e-08
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		7e-08
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		7e-08
2eq7_A	455	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-07
3klj_A	385	Crystal Structure Of Nadh:rubredoxin Oxidoreductase		2e-07
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		4e-07
1zy8_A	474	The Crystal Structure Of Dihydrolipoamide Dehydroge		2e-06
1zmc_A	474	Crystal Structure Of Human Dihydrolipoamide Dehydro		2e-06
3rnm_A	495	The Crystal Structure Of The Subunit Binding Of Hum		2e-06
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-06
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		3e-06
3oc4_A	452	Crystal Structure Of A Pyridine Nucleotide-Disulfid		4e-06
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		6e-06
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		7e-06
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		7e-06
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		1e-05
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		1e-05
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		1e-05
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		1e-05
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		1e-05
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		1e-05
3kd9_A	449	Crystal Structure Of Pyridine Nucleotide Disulfide		4e-05
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		9e-05
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		1e-04
2a87_A	335	Crystal Structure Of M. Tuberculosis Thioredoxin Re		2e-04
1cl0_A	320	Crystal Structure Of Reduced Thioredoxin Reductase		2e-04
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		2e-04
1f6m_A	320	Crystal Structure Of A Complex Between Thioredoxin		2e-04
1tde_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		2e-04
1tdf_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		4e-04
1trb_A	320	Convergent Evolution Of Similar Function In Two Str		4e-04
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		6e-04
1dxl_A	470	Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy		7e-04

>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/359 (32%), Positives = 179/359 (49%), Gaps = 23/359 (6%)
Query: 30  PGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTP-KWYNEHGIEL 88
           PG + +I++E   PY+RP LSK YL            +    N     P K++ +  IEL
Sbjct: 26  PGRIALINDEKHLPYQRPPLSKAYL-----------KSGGDPNSLMFRPEKFFQDQAIEL 74
Query: 89  VLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLA 148
           +   R+ S D   + L+ A+G  I Y  L++ATGAR   L+   +  +   +V YLR L 
Sbjct: 75  I-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLD---VPNASLPDVLYLRTLD 130
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
           ++  L   M      + VVIG G+IG+E AA+     + V +V      MAR+ TP+I+S
Sbjct: 131 ESEVLRQRMPDKK--HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISS 188
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 268
           Y+ + +   G++   G   +    + + +V  V L DGN LP D+VVVG+G+ PN  +  
Sbjct: 189 YFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAA 247
Query: 269 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 328
                   GI V  +L +S+  + A+GD A F     GET R+E V +A   A+  VAA 
Sbjct: 248 AAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR-CVAAR 306
Query: 329 MEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 385
           +  D    +D  P+F+S       Q  G   G  +VV  G+ +  +F A+    G+L+G
Sbjct: 307 LTGD-AKPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIG 364

>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431

Iteration: 1
 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 197/408 (48%), Gaps = 17/408 (4%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
           G + ++ +  V P+  P LSK YL  +A A      T          P  Y    I+L+ 
Sbjct: 30  GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLG 79
Query: 91  GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
           GT+V + +  R+ ++ + G  + Y  L++ATG R   L     +   A N  YLR L DA
Sbjct: 80  GTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDA 139
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
             +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  + R+  P ++++Y
Sbjct: 140 ECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 197
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
           E  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ GIG+ PN  L   
Sbjct: 198 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 257
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
                  GI +   +Q+S+  + AVGD A F  +L     R+E V +A + A+  +AAI+
Sbjct: 258 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAIL 316
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSF 387
              K  + +  P+F+S  + +  +  G + G   ++  G+ +   F  +++   R++   
Sbjct: 317 -CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVD 375
Query: 388 LEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTP 435
                 E  ++    T   PV  +L   E+  L   +A ++  L S P
Sbjct: 376 TVNRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIAAAKAELSSAP 423

>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436

Iteration: 1
 Score =  156 bits (394), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 179/358 (50%), Gaps = 17/358 (4%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
           G + ++ +  V P+  P LSK YL  +A A      T          P  Y    I+L+ 
Sbjct: 29  GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLG 78
Query: 91  GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
           GT+V + +  R+ ++ + G  + Y  L++ATG R   L     +   A N  YLR L DA
Sbjct: 79  GTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDA 138
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
             +   +   +    VVIGGGYIG+E AA+ +   ++VT++   A  + R+  P ++++Y
Sbjct: 139 ECIRRQL--IADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFY 196
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
           E  ++  GV    GT +  F++ ++  KV AV   DG RLP D+V+ GIG+ PN  L   
Sbjct: 197 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASA 256
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
                  GI +   +Q+S+  + AVGD A F  +L     R+E V +A + A+  +AAI+
Sbjct: 257 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAAIL 315
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 385
              K  + +  P+F+S  + +  +  G + G   ++  G+ +   F  +++   R++ 
Sbjct: 316 -CGKVPRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLA 372

>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415

Iteration: 1
 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/358 (31%), Positives = 169/358 (47%), Gaps = 22/358 (6%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH-TCVGANEERLTPKWYNEHGIELV 89
           G + +I  EP  PYERP LSK YL     AR  +F   C+         +++ +  +E+ 
Sbjct: 35  GRVLVIGREPEIPYERPPLSKEYL-----AREKTFERICI------RPAQFWEDKAVEMK 83
Query: 90  LGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLAD 149
           LG  V S D    T+    G  I Y  LI ATG    +L      G+D   V  +R   D
Sbjct: 84  LGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKED 140
Query: 150 ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASY 209
           A+RL+  + +    NAVVIGGGYIG+E AA L    +NVT++      +AR+    ++ +
Sbjct: 141 ADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
           Y+  +++ GV    G  +   + D   KV  V ++DG+ +P D+V+VGIGI P       
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIEGDGT-KVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKSAKHAVAAI 328
                  G+ V    ++S + VYA+GD AA       G   RLE V +A   A  A   I
Sbjct: 259 AGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDI 318
Query: 329 MEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--VVHYGNFSGTTFGAYWVNKGRLV 384
                   +   P+F+S  + L  Q  G + G    V  G+ +  +F   ++  G++V
Sbjct: 319 C--GAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVV 374

>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29  PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
           P   + I+SE+P  PY RP LSK     + P    +        +ER      P +Y   
Sbjct: 77  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 136
Query: 82  ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
                    G+ ++ G +V   DVR   +    G  I+++  +IATG     L     +G
Sbjct: 137 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 196
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
           ++ ++   L R + D   L  + +     +  VIGGG++G E A +L      + I V  
Sbjct: 197 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 254
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +FPE   M ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ 
Sbjct: 255 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 312
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
           TD +V  +G+ PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG 
Sbjct: 313 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 371
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
            RR+EH D A  S + A   +    K       P+++  +F   W   G +VG E +   
Sbjct: 372 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 420
Query: 367 NFSGTTFGAY 376
           + S  T G +
Sbjct: 421 DSSLPTVGVF 430

>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29  PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
           P   + I+SE+P  PY RP LSK     + P    +        +ER      P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 112
Query: 82  ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
                    G+ ++ G +V   DVR   +    G  I+++  +IATG     L     +G
Sbjct: 113 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 172
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
           ++ ++   L R + D   L  + +     +  VIGGG++G E A +L      + I V  
Sbjct: 173 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 230
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +FPE   M ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ 
Sbjct: 231 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 288
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
           TD +V  +G+ PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG 
Sbjct: 289 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 347
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
            RR+EH D A  S + A   +    K       P+++  +F   W   G +VG E +   
Sbjct: 348 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 396
Query: 367 NFSGTTFGAY 376
           + S  T G +
Sbjct: 397 DSSLPTVGVF 406

>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528

Iteration: 1
 Score =  114 bits (286), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 38/370 (10%)
Query: 29  PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
           P   + I+SE+P  PY RP LSK     + P    +        +ER      P +Y   
Sbjct: 72  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQWNGKERSIYFQPPSFYVSA 131
Query: 82  ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
                    G+ ++ G +V   DVR   +    G  I+++  +IATG     L     +G
Sbjct: 132 QDLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAG 191
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL----VINKINVTM 190
           ++ ++   L R + D   L  + +     +  VIGGG++G E A +L      + I V  
Sbjct: 192 AEVKSRTTLFRKIGDFRALEKISREVK--SITVIGGGFLGSELACALGRKSQASGIEVIQ 249
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +FPE   M ++    ++++  E  K +GVK +   ++ S  V S G+++ + L+DG ++ 
Sbjct: 250 LFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGV-SGGRLL-IKLKDGRKVE 307
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
           TD +V  +G+ PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG 
Sbjct: 308 TDHIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 366
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
            RR+EH D A  S + A   +    K       P+++  +F   W   G +VG E +   
Sbjct: 367 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 415
Query: 367 NFSGTTFGAY 376
           + S  T G +
Sbjct: 416 DSSLPTVGVF 425

>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 37/355 (10%)
Query: 29  PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
           P   + I+SE+P  PY RP LSK     + P    +        +ER      P +Y   
Sbjct: 53  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 112
Query: 82  ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
                    G+ ++ G +V   DVR   +    G  I+Y+  +IATG     L     +G
Sbjct: 113 QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 172
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTM 190
           ++ ++   L R + D   L  + +     +  +IGGG++G E A +L          V  
Sbjct: 173 AEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQ 230
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +FPE   M ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ 
Sbjct: 231 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVE 288
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
           TD +V  +G+ PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG 
Sbjct: 289 TDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 347
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 362
            RR+EH D A  S + A   +    K       P+++  +F   W   G +VG V
Sbjct: 348 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYV 391

>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 170/370 (45%), Gaps = 38/370 (10%)
Query: 29  PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER----LTPKWY--- 81
           P   + I+SE+P  PY RP LSK     + P    +        +ER      P +Y   
Sbjct: 35  PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSA 94
Query: 82  ------NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG 135
                    G+ ++ G +V   DVR   +    G  I+Y+  +IATG     L     +G
Sbjct: 95  QDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 136 SDAENVCYL-RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK----INVTM 190
           ++ ++   L R + D   L  + +     +  +IGGG++G E A +L          V  
Sbjct: 155 AEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKARALGTEVIQ 212
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +FPE   M ++    ++++  E  + +GVK +   ++ S  V S+GK++ + L+DG ++ 
Sbjct: 213 LFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVE 270
Query: 251 TDMVVVGIGIRPNTSLFE-GQLTLEK--GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
           TD +V  +G+ PN  L + G L ++   GG +V   LQ + S+++  GD A F    LG 
Sbjct: 271 TDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ-ARSNIWVAGDAACFYDIKLGR 329
Query: 308 TRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYG 366
            RR+EH D A  S + A   +    K       P+++  +F   W   G +VG E +   
Sbjct: 330 -RRVEHHDHAVVSGRLAGENMTGAAK-------PYWHQSMF---WSDLGPDVGYEAIGLV 378
Query: 367 NFSGTTFGAY 376
           + S  T G +
Sbjct: 379 DSSLPTVGVF 388

>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 164/362 (45%), Gaps = 35/362 (9%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
           G + ++ +E   PY+RP LSK             F     A + RL  K   E  +E +L
Sbjct: 33  GLITVVGDEAERPYDRPPLSK------------DFMAHGDAEKIRLDCKRAPE--VEWLL 78
Query: 91  GTRVKSADVRRKTLVTATGETISYKILIIATGA--RALKLEEFGLSGSDAENVCYLRDLA 148
           G   +S D +  T+  + G T+ Y  L++ATGA  RAL      L G+    V  LR L 
Sbjct: 79  GVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT----LQGATMP-VHTLRTLE 133
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
           DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R     +A 
Sbjct: 134 DARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD 191
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPNTSLF 267
           +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG+  N +L 
Sbjct: 192 FVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALA 244
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 327
                    GI V    +++   VYA+GDV      L G   R+E   +A+         
Sbjct: 245 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 304
Query: 328 IMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAYWVNKGRLV 384
           +++P     +  LP+++S    L  Q  G   G E +  G  S     F    + KGR+V
Sbjct: 305 LVDP-TAPGYAELPWYFSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIV 363
Query: 385 GS 386
           G+
Sbjct: 364 GA 365

>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 164/362 (45%), Gaps = 35/362 (9%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
           G + ++ +E   PY+RP LSK             F     A + RL  K   E  +E +L
Sbjct: 33  GLITVVGDEAERPYDRPPLSK------------DFMAHGDAEKIRLDCKRAPE--VEWLL 78
Query: 91  GTRVKSADVRRKTLVTATGETISYKILIIATGA--RALKLEEFGLSGSDAENVCYLRDLA 148
           G   +S D +  T+  + G T+ Y  L++ATGA  RAL      L G+    V  LR L 
Sbjct: 79  GVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT----LQGATMP-VHTLRTLE 133
Query: 149 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS 208
           DA R+   ++  S    +++GGG IG+E AA+     ++V++V  +   M+R     +A 
Sbjct: 134 DARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLAD 191
Query: 209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGNRLPTDMVVVGIGIRPNTSLF 267
           +   Y+ ++GV          F+    G V  V L  DG R+  DMVVVGIG+  N +L 
Sbjct: 192 FVARYHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALA 244
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 327
                    GI V    +++   VYA+GDV      L G   R+E   +A+         
Sbjct: 245 RAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARH 304
Query: 328 IMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EVVHYGNFS--GTTFGAYWVNKGRLV 384
           +++P     +  LP+++S    L  Q  G   G E +  G  S     F    + KGR+V
Sbjct: 305 LVDP-TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIV 363
Query: 385 GS 386
           G+
Sbjct: 364 GA 365

>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 148/328 (45%), Gaps = 23/328 (7%)
Query: 31  GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVL 90
           G + +I +EP  PY+RP+LSK  +L  +  R P                WY E  I+++ 
Sbjct: 28  GRISLIGDEPHLPYDRPSLSKA-VLDGSLERPPILAEA----------DWYGEARIDMLT 76
Query: 91  GTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
           G  V + DV+ +T+    G T+S   ++IATG+RA       L GS    V  LR   D 
Sbjct: 77  GPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA---RTMALPGSQLPGVVTLRTYGDV 133
Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
             L +   S +    +++GGG IG E A +     ++VT++      + R+   +I ++ 
Sbjct: 134 QVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWL 191
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EG 269
                  GV+   GT +  F     G++  V   DG     D  ++ +G  P   L  + 
Sbjct: 192 RGLLTELGVQVELGTGVVGF--SGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQA 249
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
            L  ++ G+ V     +    V+AVGDVA++PL+  G  R LE   +A++ A    AAI+
Sbjct: 250 GLACDR-GVIVDHCGATLAKGVFAVGDVASWPLR-AGGRRSLETYMNAQRQAAAVAAAIL 307
Query: 330 EPDKTDKFDYLPFFYSRVFTLSWQFYGD 357
              K      LP  ++ +     Q  GD
Sbjct: 308 --GKNVSAPQLPVSWTEIAGHRMQMAGD 333

>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480

Iteration: 1
 Score = 86.3 bits (212), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 121/261 (46%), Gaps = 18/261 (6%)
Query: 49  LSKGYLLPEAPARLPSFHTCVGANEERLTPK----WYNEHGIELVLGTRVKSADVRRKTL 104
           L KG +   A   LP   +   A+ E+L  +    + +++GI+  +   V   D  +K +
Sbjct: 67  LEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIV 126
Query: 105 VTATGET-----ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159
                +T      SY  L+IATG R +  E     G D + V  L+ + DA R++  +++
Sbjct: 127 YAEHTKTKDVFEFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILKTLET 183
Query: 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
               +  +IGGG IG+E A + V     V M+    H +  ++   +A Y  +      +
Sbjct: 184 NKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH-IGTIYDGDMAEYIYKEADKHHI 242
Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKGG 277
           + +    + +F    N +V AV    G     D+V+V +G++PNT   EG    T  KG 
Sbjct: 243 EILTNENVKAF--KGNERVEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGA 299
Query: 278 IKVTGRLQSSNSSVYAVGDVA 298
           I+V   +Q++   VYA GD A
Sbjct: 300 IEVNAYMQTNVQDVYAAGDCA 320

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95  KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
           K   V  K LV+      +Y  LII+ GA   +L+   + G D +N+  +R    A +L 
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
                    N VVIG GYIG+E A +       VT++      +      +      E  
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
           ++  +    G  +  ++ D  G+V  V + D N    D+VVV +G+RPNT+  +G L L 
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
             G IK    +++S   V+AVGD              +    +ARK  + AV  + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95  KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
           K   V  K LV+      +Y  LII+ GA   +L+   + G D +N+  +R    A +L 
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
                    N VVIG GYIG+E A +       VT++      +      +      E  
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
           ++  +    G  +  ++ D  G+V  V + D N    D+VVV +G+RPNT+  +G L L 
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
             G IK    +++S   V+AVGD              +    +ARK  + AV  + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95  KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
           K   V  K LV+      +Y  LII+ GA   +L+   + G D +N+  +R    A +L 
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
                    N VVIG GYIG+E A +       VT++      +      +      E  
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
           ++  +    G  +  ++ D  G+V  V + D N    D+VVV +G+RPNT+  +G L L 
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
             G IK    +++S   V+AVGD              +    +ARK  + AV  + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 7/240 (2%)
Query: 95  KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
           K   V  K LV+      +Y  LII+ GA   +L+   + G D +N+  +R    A +L 
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
                    N VVIG GYIG+E A +       VT++      +      +      E  
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
           ++  +    G  +  ++ D  G+V  V + D N    D+VVV +G+RPNT+  +G L L 
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
             G IK    +++S   V+AVGD              +    +ARK  + AV  + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVK 318

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 7/261 (2%)
Query: 74  ERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGL 133
           E++  +  N      +   + K   V  K LV+      +Y  LII+ GA   +L+   +
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---I 120
Query: 134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
            G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++  
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
               +      +      E  ++  +    G  +  ++ D  G+V  V + D N    D+
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADL 237
Query: 254 VVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 312
           VVV +G+RPNT+  +G L L   G IK    +++S   V+AVGD              + 
Sbjct: 238 VVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIA 297
Query: 313 HVDSARKSAKHAVAAIMEPDK 333
              +ARK  + AV  + EP K
Sbjct: 298 LATNARKQGRFAVKNLEEPVK 318

>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 49  LSKGYLLPEAPARLPSFHTCVGANEERLTPK----WYNEHGIELVLGTRVKSADVRRKTL 104
           L KG +   A   LP   +   A+ E+L  +    + +++GI+  +   V   D  +K +
Sbjct: 67  LEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIV 126
Query: 105 VTATGET-----ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS 159
                +T      SY  L+IATG R +  E     G D + V  L+ + DA R++  +++
Sbjct: 127 YAEHTKTKDVFEFSYDRLLIATGVRPVXPE---WEGRDLQGVHLLKTIPDAERILKTLET 183
Query: 160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
               +  +IGGG IG+E A + V     V  +    H +  ++    A Y  +      +
Sbjct: 184 NKVEDVTIIGGGAIGLEXAETFVELGKKVRXIERNDH-IGTIYDGDXAEYIYKEADKHHI 242
Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ--LTLEKGG 277
           + +    + +F    N +V AV    G     D+V+V +G++PNT   EG    T  KG 
Sbjct: 243 EILTNENVKAF--KGNERVEAVETDKGT-YKADLVLVSVGVKPNTDFLEGTNIRTNHKGA 299
Query: 278 IKVTGRLQSSNSSVYAVGDVA 298
           I+V    Q++   VYA GD A
Sbjct: 300 IEVNAYXQTNVQDVYAAGDCA 320

>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 77  TPKWYNEHGIELVLGTRVKSAD-----VRRKTLVTATGETISYKILIIATGARALKLEEF 131
           +P+  +  G  + +  +V + D     ++ K L+T   +T +Y  LI+ TG++       
Sbjct: 64  SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV 191
            + G D+  V   ++  DA +L    ++       +IG GYIG E A +      NV ++
Sbjct: 122 -IPGIDSSRVYLCKNYNDAKKLFE--EAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLI 178
Query: 192 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 251
                 + + F  +      + Y++ GV  V G+ +++F+ + + +++   L DG  + +
Sbjct: 179 DGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFE-EVDDEIITKTL-DGKEIKS 236
Query: 252 DMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQSSNSSVYAVGDVAA 299
           D+ ++ IG RPNT L +G++  L+ G I     + SSN  ++A GD AA
Sbjct: 237 DIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 104/240 (43%), Gaps = 7/240 (2%)
Query: 95  KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLV 154
           K   V  K LV+      +Y  LII+ GA   +L+   + G D +N+  +R    A +L 
Sbjct: 85  KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLK 141
Query: 155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY 214
                    N VVIG GYIG+E A +       VT++      +      +      E  
Sbjct: 142 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 201
Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
           ++  +    G  +  ++ D  G+V  V + D N    D+VVV +G+RPNT+  +G L L 
Sbjct: 202 EANNITIATGETVERYEGD--GRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELH 258
Query: 275 KGG-IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 333
             G IK    +++S   V+AVGD              +    +A K  + AV  + EP K
Sbjct: 259 PNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNLEEPVK 318

>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 24/269 (8%)
Query: 33  LCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGT 92
           L +I+ +    Y +P LS G+   +    L       GA  E+L  +        ++  T
Sbjct: 32  LLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEP--GAMAEQLNAR--------ILTHT 81
Query: 93  RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY-LRDLADAN 151
           RV   D   + +     E + Y+ L++A GA  +++   G    DA++  Y + DL D  
Sbjct: 82  RVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPVEG----DAQDALYPINDLEDYA 136
Query: 152 RLVNVMKSCSGGNAVVI-GGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY 210
           R     ++ +G   V++ G G IG E A  L      + +V P    M  L  P  A   
Sbjct: 137 RF---RQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAV 193
Query: 211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-FEG 269
           +   +  GV+F  G VL+S      G+ +  +L DG  +P D+VV  +G+RP T L F  
Sbjct: 194 QAGLEGLGVRFHLGPVLASLK--KAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAA 251
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVA 298
            L + + GI V   L++S++++YA+GD A
Sbjct: 252 GLAVNR-GIVVDRSLRTSHANIYALGDCA 279

>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 104/206 (50%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
           SY  L+++ GA  +      + G D      LR++ D +R++  ++  +  +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
           IG+E   SL    I  T++        ++ TP   ++A +  +  + +GV    GT LS 
Sbjct: 162 IGLEMMESLHHLGIKTTLL----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
            S+ V      D+ G+  A         + L +G  L TD++++ IG+RP T L    G 
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
              E GGIKV   +Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAMMQTSDPAIYAVGD 303

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 102 KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
           K + T      +Y +LI++ GA+ +     G+   +A+ +  LR++ D +R+   +    
Sbjct: 129 KNVTTNETYNEAYDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKK 186
Query: 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF 221
             +A VIGGG+IG+E   +L    I VT+V   A+ +      + A+Y  E+ K+  V+ 
Sbjct: 187 PRHATVIGGGFIGVEXVENLRERGIEVTLV-EXANQVXPPIDYEXAAYVHEHXKNHDVEL 245
Query: 222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIK 279
           V    + +   + NG V  V L+ G+ + TD +++ IG++P +SL +G  L L  +G IK
Sbjct: 246 VFEDGVDAL--EENGAV--VRLKSGSVIQTDXLILAIGVQPESSLAKGAGLALGVRGTIK 301
Query: 280 VTGRLQSSNSSVYAVGD 296
           V  + Q+S+  +YA+GD
Sbjct: 302 VNEKFQTSDPHIYAIGD 318

>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
           SY  L+++ GA  +      + G D      LR++ D +R++  ++  +  +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
           IG+E   SL    I  T++        ++ TP   + A +  +  + +GV    GT LS 
Sbjct: 162 IGLEXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
            S+ V      D+ G+  A         + L +G  L TD+++  IG+RP T L    G 
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
              E GGIKV    Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAXXQTSDPAIYAVGD 303

>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 29/206 (14%)
Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
           SY  L+++ GA  +      + G D      LR++ D +R++  ++  +  +A V+GGG+
Sbjct: 105 SYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGF 161
Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEYYKSKGVKFVKGTVLS- 228
           IG+E   SL    I  T++        ++ TP   + A +  +  + +GV    GT LS 
Sbjct: 162 IGLEXXESLHHLGIKTTLL----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSE 217
Query: 229 -SFDV------DSNGKVVA---------VNLRDGNRLPTDMVVVGIGIRPNTSLFE--GQ 270
            S+ V      D+ G+  A         + L +G  L TD+++  IG+RP T L    G 
Sbjct: 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGL 277
Query: 271 LTLEKGGIKVTGRLQSSNSSVYAVGD 296
              E GGIKV    Q+S+ ++YAVGD
Sbjct: 278 AIGELGGIKVNAXXQTSDPAIYAVGD 303

>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 180/398 (45%), Gaps = 59/398 (14%)
Query: 21  LEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTP-- 78
            E  K+     E+ +I +EPV  Y +P LS  Y+    P               RL P  
Sbjct: 21  FELAKQLSQTYEVTVIDKEPVPYYSKPMLSH-YIAGFIP-------------RNRLFPYS 66
Query: 79  -KWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD 137
             WY + GIE+ L    K  D  RK ++T  GE + Y  L++ATGARA + +  G     
Sbjct: 67  LDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARAREPQIKG----- 120
Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++   A  
Sbjct: 121 KEYLLTLRTIFDADRIKESIENS--GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 178
Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
           +      ++++  ++  +  GVKF     L+S  +++N + V  N      +   + +  
Sbjct: 179 LG--LDEELSNMIKDMLEETGVKF----FLNSELLEANEEGVLTN---SGFIEGKVKICA 229
Query: 258 IGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317
           IGI PN  L          GI +    ++S   VYA+GD A +   + G  +      +A
Sbjct: 230 IGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAK------AA 283
Query: 318 RKSAKHAVAAIM--EPDKTD-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFG 374
            + A+  +A I+  EP + + KF    F + +   L     G+  GE    G +      
Sbjct: 284 MEQAR-VLADILKGEPRRYNFKFRSTVFKFGK---LQIAIIGNTKGE----GKWIEDNTK 335
Query: 375 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDL 412
            ++ N G+++G+ +       +  I KAT+L+  + D 
Sbjct: 336 VFYEN-GKIIGAVV-------FNDIRKATKLEKEILDF 365

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 85  GIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL-------KLEEFGLS 134
           G ++ + + V+S D   KT   LV       +Y  LI ATG++ +       +++E  L 
Sbjct: 106 GAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLE 165
Query: 135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
             +  EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++  
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
              C+A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDM 282
Query: 254 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           V++ +G RPNT+L  G++ L   G   V  R ++S   VYA+GD A  
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATI 330

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 85  GIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL-------KLEEFGLS 134
           G ++ + + V+S D   KT   LV       +Y  LI ATG++ +       +++E  L 
Sbjct: 106 GAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLE 165
Query: 135 -GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP 193
             +  EN+ +++   ++  ++  +++       V+G GYIG+E A +       V ++  
Sbjct: 166 FEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDV 225
Query: 194 EAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM 253
              C+A  +   +     +  +  G++   G  +   +V  NGKV  + + D N    DM
Sbjct: 226 VDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKNEYDVDM 282
Query: 254 VVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVA 298
           V++ +G RPNT+L  G++ L   G   V  R ++S   VYA+GD A
Sbjct: 283 VILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCA 328

>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 14/239 (5%)
Query: 78  PKWYN-EHGIELVLGTRVKSAD-----VRRKTLVTATGETISYKILIIATGARALKLEEF 131
           P+++     +E ++ TR  + D     V  + L T    T+ Y  L++A G++A +    
Sbjct: 72  PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP-- 129
Query: 132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV-INKINVTM 190
            + G D   V  + +L +A  + + + +     AV++GGG+IG+E A SL  +  I+ T+
Sbjct: 130 -VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           V      M    +  ++       +   V    G  +   +   NGKV  V + D   L 
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 251 TDMVVVGIGIRPNTSLF-EGQLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE 307
            D+V++  G+ PNT L  +  L L+ +G I V  R+++S+  ++A GD    P  + G+
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGK 305

>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 122/283 (43%), Gaps = 35/283 (12%)
Query: 86  IELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLR 145
           +E +L    K  D      V A G+    K LI+A GA    L+   + G +A+ V    
Sbjct: 150 LEYILNCPAKVID---NHTVEAAGKVFKAKNLILAVGAGPGTLD---VPGVNAKGVF--- 200
Query: 146 DLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARLFTP 204
              D   LV  +    G   VV+GG    +E         +  V +V  E   +  +   
Sbjct: 201 ---DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP--LKLIKDN 255
Query: 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIR 261
           +  +Y  +  K +G++ + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +
Sbjct: 256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQ 315
Query: 262 PNTSLFEGQLTLE---KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR 318
           P ++     L L+   KG + V   LQ+S  +VYAVGD+   P+++            AR
Sbjct: 316 PRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMF----------KAR 365
Query: 319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 361
           KS  +A   +M     +K  Y P  Y       ++     +GE
Sbjct: 366 KSGCYAARNVM----GEKISYTPKNYPDFLHTHYEVSFLGMGE 404

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 108 TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVV 167
           + +T ++K  IIATG+R ++L  F  S         + D   A  L  V KS      VV
Sbjct: 128 SAQTYTFKNAIIATGSRPIELPNFKFSNR-------ILDSTGALNLGEVPKSL-----VV 175
Query: 168 IGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVL 227
           IGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V   + 
Sbjct: 176 IGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALA 234
Query: 228 SSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--- 283
              +   +G  V      +   +  D V+V +G RPNT     +L LE+ GIK+T R   
Sbjct: 235 KGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD----ELGLEQIGIKMTNRGLI 290
Query: 284 -----LQSSNSSVYAVGDVAAFP 301
                 ++S  +++A+GD+   P
Sbjct: 291 EVDQQCRTSVPNIFAIGDIVPGP 313

>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 27/236 (11%)
Query: 74  ERLT---PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE 130
           +RLT        +HG+++V G     A V     V   G+ I  + L++ATG+ +++L  
Sbjct: 96  DRLTTGVAALLKKHGVKVVHGW----AKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPM 151
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
             L G    +   L   A    LV            V+GGGYIG+E   +       V++
Sbjct: 152 LPLGGPVISSTEALAPKALPQHLV------------VVGGGYIGLELGIAYRKLGAQVSV 199
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RL 249
           V      +   +  ++ +   E  K  G+    G  +  ++   NG ++A + + G  RL
Sbjct: 200 VEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRL 255
Query: 250 PTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
             D V+V +G RP T  F  +   L +    I +  R Q+S  +V+A+GDVA  P+
Sbjct: 256 EADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM 311

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 62  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 120 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 175
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 176 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 228
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 229 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 279
Query: 309 RRLEHVD 315
               HVD
Sbjct: 280 SHYRHVD 286

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 30/247 (12%)
Query: 77  TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETI--SYKILIIATGARALKLEE 130
           TP K+Y+   I +     V + +  R+T   L   T E    SY  LI++ GA A  L  
Sbjct: 63  TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTM 190
               G +++    LR+L D + +   +K+      +V+G GY+ +E   +L    ++ T+
Sbjct: 121 ----GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTL 176
Query: 191 VFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP 250
           +   +  + +L    +     +    + + +     +++     NG    +  + G    
Sbjct: 177 IH-RSDKINKLMDADMNQPILDELDKREIPYRLNEEINAI----NGN--EITFKSGKVEH 229
Query: 251 TDMVVVGIGIRPNTSLFEG-QLTLE-KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET 308
            DM++ G+G  PN+   E   + L+ KG I V  + +++  ++YA+GD+A         T
Sbjct: 230 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIA---------T 280
Query: 309 RRLEHVD 315
               HVD
Sbjct: 281 SHYRHVD 287

>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 101 RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
           RK LV  TGE +  + ++IATG+  L                      D  R+V   ++ 
Sbjct: 117 RKVLVEETGEELEARYILIATGSAPL---------------IPPWAQVDYERVVTSTEAL 161
Query: 161 S----GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP---KIASYYEEY 213
           S        +V+GGG IG+E    +V +++   ++  E   M R+      +++   E  
Sbjct: 162 SFPEVPKRLIVVGGGVIGLEL--GVVWHRLGAEVIVLE--YMDRILPTMDLEVSRAAERV 217
Query: 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----G 269
           +K +G+    G  +++   ++ G    V L  G  L  D V+V +G RP T        G
Sbjct: 218 FKKQGLTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAG 275
Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPL 302
             T E+G I V   L++    +YA+GDV   P+
Sbjct: 276 LSTDERGRIPVDEHLRTRVPHIYAIGDVVRGPM 308

>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 117/273 (42%), Gaps = 41/273 (15%)
Query: 32  ELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHGIELVLG 91
           ++ +I+ E   PY RP L+      E  A+  S    +    +     WY ++ I+++  
Sbjct: 34  DITMINSEKYLPYYRPRLN------EIIAKNKSIDDILIKKND-----WYEKNNIKVITS 82
Query: 92  TRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADAN 151
               S D   K +   +GE I Y+ LIIA+G+ A K++        A+ +  L    DA 
Sbjct: 83  EFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV-----PHADEIFSLYSYDDAL 137
Query: 152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIA 207
           ++ +  K  + G A +IGGG +G+E A +++ +     I + + +P    + R       
Sbjct: 138 KIKDECK--NKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYP----LERQLDRDGG 191
Query: 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267
            + ++     G+K    +                    G+ + +  V+  +G++PN    
Sbjct: 192 LFLKDKLDRLGIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFI 236
Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
           +      K GI V   +++S   +YA GDVA F
Sbjct: 237 KDTEIASKRGILVNDHMETSIKDIYACGDVAEF 269

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
           ++ TGE IS + ++IATGA+ +      + GSD   +C       +N + ++ K     +
Sbjct: 146 LSVTGERISAEKILIATGAKIVS--NSAIKGSD---LCL-----TSNEIFDLEKLPK--S 193
Query: 165 AVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
            V++GGGYIG+E A   + + + V T +      + R F   +     +   +KG+  + 
Sbjct: 194 IVIVGGGYIGVEFAN--IFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIY 251
Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVT-- 281
              +S   V S      V L +G  +  D V++  G  PNT+     L LE+ G+KV   
Sbjct: 252 EATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERAGVKVNEF 305
Query: 282 ------GRLQSSNSSVYAVGDV 297
                  ++ ++ S ++AVGDV
Sbjct: 306 GAVVVDEKMTTNVSHIWAVGDV 327

>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 182 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 241
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 242 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 301
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
           I V  R Q+   ++YA+GDV A P+
Sbjct: 302 IPVNTRFQTKIPNIYAIGDVVAGPM 326

>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 8/145 (5%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           VVIG G IG+E  +       +VT V    H        +I+  ++   + +G KF   T
Sbjct: 203 VVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNT 262
Query: 226 VLSSFDVDSNGKV-VAVNLRDGNR---LPTDMVVVGIGIRP---NTSLFEGQLTLE-KGG 277
            ++     S+GK+ V++    G +   +  D+++V IG RP   N  L E  + L+ +G 
Sbjct: 263 KVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGR 322
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
           I V  R Q+   ++YA+GDV A P+
Sbjct: 323 IPVNTRFQTKIPNIYAIGDVVAGPM 347

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 24/204 (11%)
Query: 99  VRRKTLVTATGETISYKILIIATGARALKLEEFGLS-GSDAENVCYLRDLADANRLVNVM 157
           V  KTL    GETI+   ++IATG R    +  G+  G D++    L  L +        
Sbjct: 118 VDAKTL-EVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPE-------- 168
Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKS 216
                    V+G GYI +E A   VIN +   T +F   H   R F P I+    E   +
Sbjct: 169 ------RVAVVGAGYIAVELAG--VINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNA 220
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTL 273
           +G +     +  +   +++G +  + L DG     D ++  IG  P   N +L    +  
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 274 EKGGIKVTGRLQSSN-SSVYAVGD 296
            + G  V  + Q++N   +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%), Gaps = 29/218 (13%)
Query: 89  VLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-----ALKLEEFGLSGSDAENVCY 143
           +L TR + A      L+ A+G+T++ + ++IA G       AL   E  ++ ++A ++  
Sbjct: 110 ILDTRAELAGPNTVKLL-ASGKTVTAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPA 168
Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 203
           L +                 + ++ GGGYI +E A       +  T+++     ++R F 
Sbjct: 169 LPE-----------------SILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FD 210
Query: 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263
                      + KG++ +   ++ S   D++G+ VA   + G  +  D V + +G  PN
Sbjct: 211 QDXRRGLHAAXEEKGIRILCEDIIQSVSADADGRRVATTXKHGE-IVADQVXLALGRXPN 269
Query: 264 TSLF----EGQLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
           T+       G  T E G I V    ++S   +YA+GDV
Sbjct: 270 TNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDV 307

>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 28/320 (8%)
Query: 24  TKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER-LTPKWYN 82
           +++  P  E+ +I ++    Y    LS  +            HT    +E R +T +   
Sbjct: 21  SRKKYPQAEISLIDKQATVGYLSGGLSAYF-----------NHTINELHEARYITEEELR 69
Query: 83  EHGIELVLGTRVKSADVRRKTLVTATGET---ISYKILIIATGARALKLEEFGLSGSDAE 139
              I+L+L   V + DV  + +     E     SY  LI+ATGA     +   + GS  E
Sbjct: 70  RQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ---IRGSQTE 126
Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 199
            +   + L+ A   V ++++       VIG G IG E    LV  K  V +     + + 
Sbjct: 127 KLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGXEAIDFLVKXKKTVHVFESLENLLP 184
Query: 200 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
           + F  +  +  ++  + + V F     +   +  +NG V+  + ++   +  D  +  + 
Sbjct: 185 KYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIFALN 241
Query: 260 IRPNTSLFEG--QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA 317
           + P  +  +   Q  L++  I V   LQ+S  +V+A+GD  +   + + ET     V++A
Sbjct: 242 LHPQLAYLDKKIQRNLDQT-IAVDAYLQTSVPNVFAIGDCISVXNEPVAETFYAPLVNNA 300
Query: 318 RKSAKHAVAAIMEPDKTDKF 337
            ++    V A    +KT +F
Sbjct: 301 VRTG--LVVANNLEEKTHRF 318

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
           TI+   +I+ATG R    E     E+G++  D  ++ Y                   G  
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF K  
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
           V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    +   +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
            L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
           TI+   +I+ATG R    E     E+G++  D  ++ Y                   G  
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF K  
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
           V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    +   +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
            L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 111 TISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA 165
           TI+   +I+ATG R    E     E+G++  D  ++ Y                   G  
Sbjct: 247 TITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFP-----------------GKT 289
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           +VIG  Y+ +ECA  L     +VT++      + R F  ++A    +Y ++ GVKF K  
Sbjct: 290 LVIGASYVALECAGFLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFAKLC 347
Query: 226 V------LSSFDVDSNGK---VVAVNLRDGNRLPTDM--VVVGIGIRPNTSLFEGQ---L 271
           V      L   D ++N     +V  +  DG +   +   V+  +G  P  S    +   +
Sbjct: 348 VPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV 407
Query: 272 TLEKGG-IKVTGRLQSSNSSVYAVGDVAA 299
            L+K G +  T   Q++ S+VYA+GD+ A
Sbjct: 408 KLDKNGRVVCTDDEQTTVSNVYAIGDINA 436

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 112 ISYKILIIATGAR---------ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
           +S + ++IATG R         AL   E+G++  D   + +L++              S 
Sbjct: 146 LSAEHIVIATGGRPRYPTQVKGAL---EYGITSDD---IFWLKE--------------SP 185
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +F+
Sbjct: 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRS--IPLRGFDQQMSSLVTEHMESHGTQFL 243
Query: 223 KGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGGI 278
           KG V S    + +N   V        +  T   D V+  IG  P T      L LEK GI
Sbjct: 244 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT----LNLEKAGI 299
Query: 279 KVTGRLQ---------SSNSSVYAVGDVA 298
               + Q         +S   +YA+GDVA
Sbjct: 300 STNPKNQKIIVDAQEATSVPHIYAIGDVA 328

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
           + TV  S +   +GK++    N+  G       D V+  I   G+  + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 167 VIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
           +IG GYIG+E A  L      VT+V  E   + + F P +++   E   ++G++      
Sbjct: 171 IIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIETHLEFA 229
Query: 227 LSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLTLEKGGIKV----- 280
           +++ + D+ G  +    +DG RL   D V+  +G  PNT      L LE  GI+V     
Sbjct: 230 VAALERDAQGTTLVA--QDGTRLEGFDSVIWAVGRAPNTR----DLGLEAAGIEVQSNGM 283
Query: 281 --TGRLQSSN-SSVYAVGDV 297
             T   Q++N   VYA+GD+
Sbjct: 284 VPTDAYQNTNVPGVYALGDI 303

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 184 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 241
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
           + TV  S +   +GK++    N+  G       D V+  I   G+  + +L    +T++K
Sbjct: 242 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 301
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 302 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 361
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
                ++A   + E D   +F  D +  F+
Sbjct: 362 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 391

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G GYIG+ECA  L       T++      + R F  ++A       + +G+ F+
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVAASMEERGIPFL 245
Query: 223 KGTVLSSFDVDSNGKVVA--VNLRDGNRLPT--DMVVVGI---GIRPNTSLFEGQLTLEK 275
           + TV  S +   +GK++    N+  G       D V+  I   G+  + +L    +T++K
Sbjct: 246 RKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK 305
Query: 276 GGIKVTGRLQSSNSSVYAVGD----------VAAFPLKLL------GETRRLEHVDSAR- 318
             I V  +  ++ +++YAVGD          VA    +LL      G T+R+++ D A  
Sbjct: 306 DKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT 365
Query: 319 --KSAKHAVAAIMEPDKTDKF--DYLPFFY 344
                ++A   + E D   +F  D +  F+
Sbjct: 366 VFTPLEYACVGLSEEDAVKQFGADEIEVFH 395

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 112 ISYKILIIATGAR---------ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
           +S + ++IATG R         AL   E+G++  D   + +L++              S 
Sbjct: 172 LSAEHIVIATGGRPRYPTQVKGAL---EYGITSDD---IFWLKE--------------SP 211
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G  Y+ +ECA  L    ++ T++        R F  +++S   E+ +S G +F+
Sbjct: 212 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFL 269
Query: 223 KGTVLSSF-DVDSNGKVVAVNLRDGNRLPT---DMVVVGIGIRPNTSLFEGQLTLEKGGI 278
           KG V S    + +N   V        +  T   D V+  IG  P T      L LEK GI
Sbjct: 270 KGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR----TLNLEKAGI 325
Query: 279 KVTGRLQ---------SSNSSVYAVGDVA 298
               + Q         +S   +YA+GDVA
Sbjct: 326 STNPKNQKIIVDAQEATSVPHIYAIGDVA 354

>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 106/244 (43%), Gaps = 27/244 (11%)
Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGE-TISYKILIIATGA--RALKLEEFGLSGSDA 138
            + GI+L L   V   D     +    GE +  +  L+ A GA  +   +E   L G   
Sbjct: 70  KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKG--- 126
Query: 139 ENVCYLRDL-ADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197
               +  DL  DA  +   M+     N V+IGGGYIG+E A +      NVTM+      
Sbjct: 127 ---VFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183
Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
           + R F  ++    EE  K K V      +  +  ++   +V  V + D      ++V++ 
Sbjct: 184 LRRSFDKEVTDILEEKLK-KHVNLRLQEI--TMKIEGEERVEKV-VTDAGEYKAELVILA 239
Query: 258 IGIRPNTSLFE--GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 315
            GI+PN  L +  G    E G I    ++Q+S  +VYA GDVA        ETR   HV 
Sbjct: 240 TGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA--------ETR---HVI 288
Query: 316 SARK 319
           + R+
Sbjct: 289 TGRR 292

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 20/207 (9%)
Query: 106 TATGETISYKILIIATGARAL---KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
           T TG     + ++IA G  A    KL + G       N+ +L   +     V  ++   G
Sbjct: 112 TNTGNVYRSRAVLIAAGLGAFEPRKLPQLG-------NIDHLTG-SSVYYAVKSVEDFKG 163
Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
              V++GGG   ++    L+ N  +VT+V             K A   E    +  +   
Sbjct: 164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVY 220
Query: 223 KGTVLSSFDVDSNGKVVAVNLR--DGNR--LPTDMVVVGIGIRPNTS-LFEGQLTLEKGG 277
             T ++S + +SNG +  V+LR  DG++  +  D +++ IG + N   L    L L +  
Sbjct: 221 LETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENA 279
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           + V   +++S   +YA GD+A +P KL
Sbjct: 280 LVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 39/215 (18%)
Query: 106 TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS---- 161
           TA+G  +  + +IIATGA+   +   G      + V Y                C     
Sbjct: 307 TASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYC-------------PHCDGPLF 353
Query: 162 -GGNAVVIGGGYIGMECAASL--VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218
            G    VIGGG  G+E A  L  ++  + +    PE     ++   K+ S        K 
Sbjct: 354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-DQVLQDKVRSL-------KN 405
Query: 219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDM-------VVVGIGIRPNTSLFEGQL 271
           V  +     +    D + KVV +  RD  R+  D+       + V IG+ PNT   EG L
Sbjct: 406 VDIILNAQTTEVKGDGS-KVVGLEYRD--RVSGDIHSVALAGIFVQIGLLPNTHWLEGAL 462
Query: 272 TLEK-GGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305
              + G I +  + ++S   V+A GD    P K +
Sbjct: 463 ERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQI 497

>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 52/258 (20%)
Query: 102 KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
           K++VTA G+T   + +I+A GA A  L+  G    + E +          R V+   +C 
Sbjct: 103 KSVVTADGQTHRARAVILAMGAAARYLQVPG----EQELL---------GRGVSSCATCD 149
Query: 162 G-----GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216
           G      +  VIGGG   ME A  L     +VT+V    H        KI    +    +
Sbjct: 150 GFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLV----HRRDEFRASKI--MLDRARNN 203
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQL 271
             ++F+    + + D D+   V  + +RD N      LP   V V IG  P + L    +
Sbjct: 204 DKIRFLTNHTVVAVDGDTT--VTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAI 261
Query: 272 TLEKGG-IKVTGRLQSSN-SSVYAVGDVAAFPLKLLGETRR----------LEHVDSARK 319
            ++  G + V GR  S++   V+A GD       L+  T R             +D+ R 
Sbjct: 262 DVDPDGYVLVQGRTTSTSLPGVFAAGD-------LVDRTYRQAVTAAGSGCAAAIDAERW 314
Query: 320 SAKHAVAAIMEPDKTDKF 337
            A+H  AA  E D TD  
Sbjct: 315 LAEH--AATGEADSTDAL 330

>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
           LIIATGA A  L   GL   +A             R V+   +C G         VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSACATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
              +E A  L      V ++     F     + +    K+ +     + ++ ++ V G  
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
           +          V  V LRD         L    + V IG  PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
              +     Q+S   V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 24/204 (11%)
Query: 99  VRRKTLVTATGETISYKILIIATGARALKLEEFGLS-GSDAENVCYLRDLADANRLVNVM 157
           V  KTL    GETI+   ++IATG R    +  G+  G D++    L  L +        
Sbjct: 118 VDAKTL-EVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPE-------- 168
Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKINV-TMVFPEAHCMARLFTPKIASYYEEYYKS 216
                    V+G GYIG+E     VIN +   T +F         F P I+    E   +
Sbjct: 169 ------RVAVVGAGYIGVELGG--VINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP---NTSLFEGQLTL 273
           +G +     +  +   +++G +  + L DG     D ++  IG  P   N +L    +  
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 274 EKGGIKVTGRLQSSN-SSVYAVGD 296
            + G  V  + Q++N   +YAVGD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303

>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
           LIIATGA A  L   GL   +A             R V+   +C G         VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSASATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
              +E A  L      V ++     F     + +    K+ +     + ++ ++ V G  
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
           +          V  V LRD         L    + V IG  PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
              +     Q+S   V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287

>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 81/202 (40%), Gaps = 43/202 (21%)
Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGG 171
           LIIATGA A  L   GL   +A             R V+   +C G         VIGGG
Sbjct: 108 LIIATGASARYL---GLPSEEAFK----------GRGVSACATCDGFFYRNQKVAVIGGG 154
Query: 172 YIGMECAASLVINKINVTMV-----FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTV 226
              +E A  L      V ++     F     + +    K+ +     + ++ ++ V G  
Sbjct: 155 NTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214
Query: 227 LSSFDVDSNGKVVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
           +          V  V LRD         L    + V IG  PNT++FEGQL LE G IKV
Sbjct: 215 MG---------VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKV 265
Query: 281 TGRL-----QSSNSSVYAVGDV 297
              +     Q+S   V+A GDV
Sbjct: 266 QSGIHGNATQTSIPGVFAAGDV 287

>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 238 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 286
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 287 SNSSVYAVGDV 297
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 238 VVAVNLRDGNR------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QS 286
           V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +     Q+
Sbjct: 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQT 276
Query: 287 SNSSVYAVGDV 297
           S   V+A GDV
Sbjct: 277 SIPGVFAAGDV 287

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
           V   GE    K LI+ATG+  L+L+ F           +  D+ D+ R + V +      
Sbjct: 123 VEVGGERYGAKSLILATGSEPLELKGF----------PFGEDVWDSTRALKVEEGLPK-R 171
Query: 165 AVVIGGGYIGMECAASLVINKINVTMV--FPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
            +VIGGG +G+E           VT++   PE         P+ A+      + +G++  
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQG---DPETAALLRRALEKEGIRVR 228
Query: 223 KGTVLSSFDVDSNG---KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIK 279
             T    ++   +G   ++      +G  +  D V+V +G +P T   EG L LEK G+K
Sbjct: 229 TKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT---EG-LGLEKAGVK 284
Query: 280 V--------TGRLQSSNSSVYAVGDVAAFPL 302
           V          R+++S   VYA+GD A  PL
Sbjct: 285 VDERGFIRVNARMETSVPGVYAIGDAARPPL 315

>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 10/145 (6%)
Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
           VVIG GYIG+E  +  V  +I   +   E A  +      +I   ++   + +G+KF   
Sbjct: 181 VVIGAGYIGLEMGS--VWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 238
Query: 225 TVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFE----GQLTLEKGG 277
           T +   D   +G  + V    G     +  D+V+V  G  P TS       G  T + G 
Sbjct: 239 TKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGR 298
Query: 278 IKVTGRLQSSNSSVYAVGDVAAFPL 302
           I V  R  ++ S VYA+GDV   P+
Sbjct: 299 ILVNERFSTNVSGVYAIGDVIPGPM 323

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	1e-115
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	1e-107
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	1e-104
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	1e-104
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-104
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	1e-103
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	1e-67
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-65
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	9e-57
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-56
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	4e-56
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	1e-54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	3e-54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	3e-52
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	3e-51
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	5e-50
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	1e-48
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-47
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	9e-47
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	3e-23
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	4e-21
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	5e-20
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	1e-19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	1e-19
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-19
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	9e-19
1fec_A	490	Trypanothione reductase; redox-active center, oxid	1e-18
4dna_A	463	Probable glutathione reductase; structural genomic	1e-18
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-18
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	3e-18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	4e-18
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	6e-17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	9e-17
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	2e-16
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	2e-16
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	2e-16
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	2e-16
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	1e-15
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-14
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	1e-14
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	2e-14
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	3e-14
4fk1_A	304	Putative thioredoxin reductase; structural genomic	5e-14
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	6e-14
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	8e-14
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-13
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	3e-13
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	5e-13
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	6e-13
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	7e-13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	7e-13
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	2e-12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	3e-12
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	4e-12
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	4e-12
1ojt_A	482	Surface protein; redox-active center, glycolysis,	1e-11
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	1e-11
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	2e-11
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	2e-11
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	6e-11
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	6e-11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	2e-10
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	2e-10
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	2e-10
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	4e-10
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	8e-10
3r9u_A	315	Thioredoxin reductase; structural genomics, center	9e-10
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	1e-09
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	6e-09
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	3e-08
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	4e-07
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	9e-07
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	7e-05
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	2e-04
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	4e-04

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score =  346 bits (889), Expect = e-115
 Identities = 107/439 (24%), Positives = 180/439 (41%), Gaps = 33/439 (7%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
           ++++GGG AA  AA     R  P   + I+SE+P  PY RP LSK     + P    +  
Sbjct: 14  FLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLR 72

Query: 67  TCVGANEERL----TPKWY---------NEHGIELVLGTRVKSADVRRKTLVTATGETIS 113
                 +ER      P +Y            G+ ++ G +V   DVR   +    G  I+
Sbjct: 73  FKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQIT 132

Query: 114 YKILIIATGARALKLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
           Y+  +IATG     L     +G++        R + D   L  + +     +  +IGGG+
Sbjct: 133 YEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISR--EVKSITIIGGGF 190

Query: 173 IGMECAASLVINK----INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS 228
           +G E A +L          V  +FPE   M ++    ++++  E  + +GVK +   ++ 
Sbjct: 191 LGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQ 250

Query: 229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE--KGGIKVTGRLQ 285
           S  V      + + L+DG ++ TD +V  +G+ PN  L +   L ++   GG +V   LQ
Sbjct: 251 SVGVS--SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQ 308

Query: 286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYS 345
           +  S+++  GD A F    LG  RR+EH D A  S + A   +    K   + +   F+S
Sbjct: 309 AR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSMFWS 364

Query: 346 RVF-TLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKA 402
            +   + ++  G        V     +          +    G   E  T+ E   I   
Sbjct: 365 DLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETESEASEITIP 424

Query: 403 TRLQPVVEDLAELETQGLG 421
                V +   + E  G G
Sbjct: 425 PSTPAVPQAPVQGEDYGKG 443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score =  324 bits (834), Expect = e-107
 Identities = 111/383 (28%), Positives = 185/383 (48%), Gaps = 20/383 (5%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VIVG G+A    A      G   G + ++ +  V P+  P LSK YL  +A A      
Sbjct: 7   VVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 65

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126
           T          P  Y    I+L+ GT+V + +  R+ ++ + G  + Y  L++ATG R  
Sbjct: 66  T----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR 115

Query: 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 186
            L     +   A N  YLR L DA  +   +   +    VVIGGGYIG+E AA+ +   +
Sbjct: 116 PLPVASGAVGKANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANM 173

Query: 187 NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRD 245
           +VT++   A  + R+  P ++++YE  ++  GV    GT +  F++ +   KV AV   D
Sbjct: 174 HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED 233

Query: 246 GNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           G RLP D+V+ GIG+ PN  L     L ++  GI +   +Q+S+  + AVGD A F  +L
Sbjct: 234 GTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQL 292

Query: 305 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EV 362
                R+E V +A + A+   A +         +  P+F+S  + +  +  G + G   +
Sbjct: 293 YDRWVRIESVPNALEQARKIAAILCGKVPR--DEAAPWFWSDQYEIGLKMVGLSEGYDRI 350

Query: 363 VHYGNFSGTTFGAYWVNKGRLVG 385
           +  G+ +   F  +++   R++ 
Sbjct: 351 IVRGSLAQPDFSVFYLQGDRVLA 373

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score =  316 bits (811), Expect = e-104
 Identities = 119/381 (31%), Positives = 183/381 (48%), Gaps = 24/381 (6%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           +I G G A    A+   +    PG + +I++E   PY+RP LSK YL          F  
Sbjct: 5   LIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRP 63

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                      K++ +  IEL +  R+ S D   + L+ A+G  I Y  L++ATGAR   
Sbjct: 64  ----------EKFFQDQAIEL-ISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRM 112

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L+   +  +   +V YLR L ++  L   M      + VVIG G+IG+E AA+     + 
Sbjct: 113 LD---VPNASLPDVLYLRTLDESEVLRQRMPD--KKHVVVIGAGFIGLEFAATARAKGLE 167

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           V +V      MAR+ TP+I+SY+ + +   G++   G   +    +   +V  V L DGN
Sbjct: 168 VDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGN 226

Query: 248 RLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
            LP D+VVVG+G+ PN  +     L     GI V  +L +S+  + A+GD A F     G
Sbjct: 227 TLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFG 285

Query: 307 ETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVH 364
           ET R+E V +A   A+   A +    K   +D  P+F+S       Q  G   G  +VV 
Sbjct: 286 ETMRVESVQNATDQARCVAARLTGDAKP--YDGYPWFWSDQGDDKLQIVGLTAGFDQVVI 343

Query: 365 YGNFSGTTFGAYWVNKGRLVG 385
            G+ +  +F A+    G+L+G
Sbjct: 344 RGSVAERSFSAFCYKAGKLIG 364

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score =  316 bits (811), Expect = e-104
 Identities = 99/383 (25%), Positives = 161/383 (42%), Gaps = 30/383 (7%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
            I+G GV     A      G   G + +I +EP  PY+RP+LSK  L             
Sbjct: 6   AIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLE-------- 56

Query: 68  CVGANEERL--TPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA 125
                   +     WY E  I+++ G  V + DV+ +T+    G T+S   ++IATG+RA
Sbjct: 57  -----RPPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111

Query: 126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK 185
             +    L GS    V  LR   D   L +   S      +++GGG IG E A +     
Sbjct: 112 RTMA---LPGSQLPGVVTLRTYGDVQVLRDSWTS--ATRLLIVGGGLIGCEVATTARKLG 166

Query: 186 INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 245
           ++VT++      + R+   +I ++        GV+   GT +  F  +  G++  V   D
Sbjct: 167 LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASD 224

Query: 246 GNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           G     D  ++ +G  P   L     L  +  G+ V     +    V+AVGDVA++PL+ 
Sbjct: 225 GRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLR- 282

Query: 305 LGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EV 362
            G  R LE   +A++ A    AAI+  + +     LP  ++ +     Q  GD  G  + 
Sbjct: 283 AGGRRSLETYMNAQRQAAAVAAAILGKNVS--APQLPVSWTEIAGHRMQMAGDIEGPGDF 340

Query: 363 VHYGNFSGTTFGAYWVNKGRLVG 385
           V  G         + + + R+  
Sbjct: 341 VSRGMPGSGAALLFRLQERRIQA 363

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score =  315 bits (810), Expect = e-104
 Identities = 117/383 (30%), Positives = 175/383 (45%), Gaps = 23/383 (6%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VIVG G     AA+   + G   G + +I  EP  PYERP LSK YL  E         
Sbjct: 12  VVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIR 70

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126
                       +++ +  +E+ LG  V S D    T+    G  I Y  LI ATG    
Sbjct: 71  P----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR 120

Query: 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 186
           +L      G+D   V  +R   DA+RL+  + +    NAVVIGGGYIG+E AA L    +
Sbjct: 121 RLS---CVGADLAGVHAVRTKEDADRLMAELDA-GAKNAVVIGGGYIGLEAAAVLTKFGV 176

Query: 187 NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 246
           NVT++      +AR+    ++ +Y+  +++ GV    G  +   + D   KV  V ++DG
Sbjct: 177 NVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDG 235

Query: 247 NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL 305
           + +P D+V+VGIGI P          +    G+ V    ++S + VYA+GD AA      
Sbjct: 236 SVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFA 294

Query: 306 -GETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EV 362
            G   RLE V +A   A  A   I        +   P+F+S  + L  Q  G + G    
Sbjct: 295 DGAVIRLESVQNANDMATAAAKDICGAPVP--YKATPWFWSNQYDLKLQTVGLSTGHDNA 352

Query: 363 VHYGNFSGTTFGAYWVNKGRLVG 385
           V  G+ +  +F   ++  G++V 
Sbjct: 353 VLRGDPATRSFSVVYLKGGKVVA 375

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score =  312 bits (802), Expect = e-103
 Identities = 99/382 (25%), Positives = 166/382 (43%), Gaps = 32/382 (8%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V++G G+A+     E  + G   G + ++ +E   PY+RP LSK ++             
Sbjct: 11  VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMA------------ 57

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
               + E++         +E +LG   +S D +  T+  + G T+ Y  L++ATGA    
Sbjct: 58  --HGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA 115

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L            V  LR L DA R+   ++       +++GGG IG+E AA+     ++
Sbjct: 116 LP---TLQGATMPVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVH 170

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           V++V  +   M+R     +A +   Y+ ++GV       ++            V L DG 
Sbjct: 171 VSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGT 224

Query: 248 RLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
           R+  DMVVVGIG+  N +L     L  +  GI V    +++   VYA+GDV      L G
Sbjct: 225 RIAADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 283

Query: 307 ETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE---VV 363
              R+E   +A+         +++P     +  LP+++S    L  Q  G   G+   V 
Sbjct: 284 RFERIETWSNAQNQGIAVARHLVDPTAPG-YAELPWYWSDQGALRIQVAGLASGDEEIVR 342

Query: 364 HYGNFSGTTFGAYWVNKGRLVG 385
              +     F    + KGR+VG
Sbjct: 343 GEVSLDAPKFTLIELQKGRIVG 364

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score =  220 bits (563), Expect = 1e-67
 Identities = 80/335 (23%), Positives = 134/335 (40%), Gaps = 29/335 (8%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VI+G G+A    A E+ K       L +I+ +    Y +P LS G+   +    L     
Sbjct: 8   VIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEP 66

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                          +    ++  TRV   D   + +       + Y+ L++A GA  ++
Sbjct: 67  ----------GAMAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPIR 115

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           +    + G   + +  + DL D  R             +++G G IG E A  L      
Sbjct: 116 VP---VEGDAQDALYPINDLEDYARFRQAAAG--KRRVLLLGAGLIGCEFANDLSSGGYQ 170

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           + +V P    M  L  P  A   +   +  GV+F  G VL+S  +   G+ +  +L DG 
Sbjct: 171 LDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLAS--LKKAGEGLEAHLSDGE 228

Query: 248 RLPTDMVVVGIGIRPNTSL-FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
            +P D+VV  +G+RP T L F   L +   GI V   L++S++++YA+GD A        
Sbjct: 229 VIPCDLVVSAVGLRPRTELAFAAGLAVN-RGIVVDRSLRTSHANIYALGDCAEV------ 281

Query: 307 ETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLP 341
           +   L +V      A+     +          Y P
Sbjct: 282 DGLNLLYVMPLMACARALAQTLAGNPSQ--VAYGP 314

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score =  215 bits (549), Expect = 2e-65
 Identities = 78/414 (18%), Positives = 156/414 (37%), Gaps = 48/414 (11%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            +I+G G A   AA     +     ++ +I+ E   PY RP L++  +            
Sbjct: 12  ILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNE-IIAKNKSIDDILIK 67

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126
                        WY ++ I+++      S D   K +   +GE I Y+ LIIA+G+ A 
Sbjct: 68  K----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIA- 116

Query: 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 186
                 +    A+ +  L    DA ++ +  K  + G A +IGGG +G+E A +++ +  
Sbjct: 117 ----NKIKVPHADEIFSLYSYDDALKIKDECK--NKGKAFIIGGGILGIELAQAIIDSGT 170

Query: 187 NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 246
             ++     + + R        + ++     G+K    +                    G
Sbjct: 171 PASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM---------------G 215

Query: 247 NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
           + + +  V+  +G++PN    +      K GI V   +++S   +YA GDVA F  K  G
Sbjct: 216 DLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDVAEFYGKNPG 275

Query: 307 ETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVG--EVV 363
                  ++ A K  + A       D +  +   +P    +V  +S    GD        
Sbjct: 276 ------LINIANKQGEVAGLNACGEDAS--YSEIIPSPILKVSGISIISCGDIENNKPSK 327

Query: 364 HYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELET 417
            + +     +    + + ++  + + G        + KA       ++++ L+ 
Sbjct: 328 VFRSTQEDKYIVCMLKENKIDAAAVIGDVS-LGTKLKKAIDSSKSFDNISSLDA 380

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score =  193 bits (494), Expect = 9e-57
 Identities = 60/320 (18%), Positives = 118/320 (36%), Gaps = 45/320 (14%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VI+G    AG +A   +++  P  E+ +         ++                  + 
Sbjct: 5   IVIIGA-SFAGISAAIASRKKYPQAEISL--------IDK-------------QATVGYL 42

Query: 67  TC-----VG---ANEERL---TPKWYNEHGIELVLGTRVKSADVRRKTLV---TATGETI 112
           +                    T +      I+L+L   V + DV  + +        +  
Sbjct: 43  SGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWY 102

Query: 113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGY 172
           SY  LI+ATGA     +   + GS  E +   + L+ A   V ++++       VIG G 
Sbjct: 103 SYDKLILATGASQFSTQ---IRGSQTEKLLKYKFLSGALAAVPLLEN--SQTVAVIGAGP 157

Query: 173 IGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 232
           IGME    LV  K  V +     + + + F  ++ +  ++  + + V F     +   + 
Sbjct: 158 IGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE 217

Query: 233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSV 291
            +NG V+         +  D  +  + + P  +  + ++       I V   LQ+S  +V
Sbjct: 218 TANGIVL---ETSEQEISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNV 274

Query: 292 YAVGDVAAFPLKLLGETRRL 311
           +A+GD  +   + + ET   
Sbjct: 275 FAIGDCISVMNEPVAETFYA 294

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score =  193 bits (492), Expect = 2e-56
 Identities = 73/321 (22%), Positives = 122/321 (38%), Gaps = 44/321 (13%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VIV G    GY A+E      P  E+          YE+                 SF +
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQW--------YEK-------------GDFISFLS 41

Query: 68  C-----VG---ANEERL---TPKWYNEHGIELVLGTRVKSADVRRKTLV---TATGE--T 111
                 +     +   +   T +     G+ +   T + +   +   +      +GE   
Sbjct: 42  AGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERV 101

Query: 112 ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG 171
            +Y  LII+ GA   +L+   + G D +N+  +R    A +L          N VVIG G
Sbjct: 102 ENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSG 158

Query: 172 YIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD 231
           YIG+E A +       VT++      +      +      E  ++  +    G  +  + 
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERY- 217

Query: 232 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSS 290
            + +G+V  V + D N    D+VVV +G+RPNT+  +G L L   G IK    +++S   
Sbjct: 218 -EGDGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPD 275

Query: 291 VYAVGDVAAFPLKLLGETRRL 311
           V+AVGD              +
Sbjct: 276 VFAVGDATLIKYNPADTEVNI 296

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score =  189 bits (483), Expect = 4e-56
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 44/306 (14%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            VIVG G      A + ++      E+ +I +EPV  Y +P LS  Y+    P       
Sbjct: 11  VVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGFIP------- 58

Query: 67  TCVGANEERL---TPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA 123
                   RL   +  WY + GIE+ L    K  D  RK ++T  GE + Y  L++ATGA
Sbjct: 59  ------RNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGA 111

Query: 124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI 183
           RA + +   + G   E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L  
Sbjct: 112 RAREPQ---IKG--KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAE 164

Query: 184 NKINVTMVFPEAHCMARL--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 241
              +V ++    H  A       ++++  ++  +  GVKF   + L   + +        
Sbjct: 165 AGYHVKLI----HRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-------G 213

Query: 242 NLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAF 300
            L +   +   + +  IGI PN  L     +   + GI +    ++S   VYA+GD A +
Sbjct: 214 VLTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEY 272

Query: 301 PLKLLG 306
              + G
Sbjct: 273 SGIIAG 278

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score =  187 bits (477), Expect = 3e-54
 Identities = 74/323 (22%), Positives = 132/323 (40%), Gaps = 47/323 (14%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VIV G   AG  A++ T    P  ++          YE                  SF +
Sbjct: 3   VIVVGCTHAGTFAVKQTIADHPDADVTA--------YEM-------------NDNISFLS 41

Query: 68  C-----VG-----ANEERL---TPKWYNEHGIELVLGTRVKSADVRRKTLV---TATGE- 110
           C     +G      +   L   +P+  +  G  + +  +V + D   KT+      T E 
Sbjct: 42  CGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEE 101

Query: 111 -TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIG 169
            T +Y  LI+ TG++        + G D+  V   ++  DA +L             +IG
Sbjct: 102 KTEAYDKLIMTTGSKPTVPP---IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIG 156

Query: 170 GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS 229
            GYIG E A +      NV ++      + + F  +      + Y++ GV  V G+ +++
Sbjct: 157 SGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAA 216

Query: 230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSN 288
           F+ + + +++     DG  + +D+ ++ IG RPNT L +G++ + + G I     + SSN
Sbjct: 217 FE-EVDDEIITK-TLDGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSN 274

Query: 289 SSVYAVGDVAAFPLKLLGETRRL 311
             ++A GD AA           +
Sbjct: 275 RDIFAAGDSAAVHYNPTNSNAYI 297

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score =  181 bits (463), Expect = 3e-52
 Identities = 77/319 (24%), Positives = 124/319 (38%), Gaps = 44/319 (13%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V++ GG AAG +A    KR  P  ++ +        +E                  S   
Sbjct: 6   VVIIGGGAAGMSAASRVKRLKPEWDVKV--------FEA-------------TEWVSHAP 44

Query: 68  C-----VG--ANEERL---TPKWY-NEHGIELVLGTRVKSADVRRKTLVTATGE--TISY 114
           C     V   +  ++L    P+ +  + GI+L L   V   D      V   G   +  +
Sbjct: 45  CGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVR-VRENGGEKSYEW 103

Query: 115 KILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIG 174
             L+ A GA         + G + + V       DA  +   M+     N V+IGGGYIG
Sbjct: 104 DYLVFANGASPQVPA---IEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIG 160

Query: 175 MECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234
           +E A +      NVTM+      + R F  ++    EE  K K V      +      + 
Sbjct: 161 IEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLK-KHVNLRLQEITMKI--EG 217

Query: 235 NGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVY 292
             +V  V + D      ++V++  GI+PN  L +   + + E G I    ++Q+S  +VY
Sbjct: 218 EERVEKV-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVY 276

Query: 293 AVGDVAAFPLKLLGETRRL 311
           A GDVA     + G    +
Sbjct: 277 AAGDVAETRHVITGRRVWV 295

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score =  179 bits (457), Expect = 3e-51
 Identities = 78/323 (24%), Positives = 134/323 (41%), Gaps = 38/323 (11%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER-PALSKGYL---LP------- 56
           V+V G VA G  A    KR  P   + +         ++   +S  Y    +P       
Sbjct: 6   VVVIGAVALGPKAACRFKRLDPEAHVTM--------IDQASRIS--YGGCGIPYYVSGEV 55

Query: 57  EAPARLPSFHTCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLV---TATGE--T 111
                L +    V  + E           +E ++ TR  + D    T+      TGE  T
Sbjct: 56  SNIESLQATPYNVVRDPEFF----RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRT 111

Query: 112 ISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG 171
           + Y  L++A G++A +     + G D   V  + +L +A  + + + +     AV++GGG
Sbjct: 112 LKYDKLVLALGSKANRPP---VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGG 168

Query: 172 YIGMECAASLV-INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230
           +IG+E A SL  +  I+ T+V      M    +  ++       +   V    G  +   
Sbjct: 169 FIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRL 228

Query: 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLTL-EKGGIKVTGRLQSSN 288
           +   NGKV  V + D   L  D+V++  G+ PNT L  +  L L  +G I V  R+++S+
Sbjct: 229 E-GENGKVARV-ITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSD 286

Query: 289 SSVYAVGDVAAFPLKLLGETRRL 311
             ++A GD    P  + G+    
Sbjct: 287 PDIFAGGDCVTIPNLVTGKPGFF 309

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score =  176 bits (449), Expect = 5e-50
 Identities = 77/323 (23%), Positives = 133/323 (41%), Gaps = 47/323 (14%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
            ++ GG AAG +A     R      +           E+               + S+  
Sbjct: 39  YVIIGGDAAGMSAAMQIVRNDENANVVT--------LEK-------------GEIYSYAQ 77

Query: 68  C-----VG---ANEERL---TPKWY-NEHGIELVLGTRVKSADVRRKTLV---TATGE-- 110
           C     +    A+ E+L     K + +++GI+  +   V   D  +K +    T T +  
Sbjct: 78  CGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVF 137

Query: 111 TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
             SY  L+IATG R +  E     G D + V  L+ + DA R++  +++    +  +IGG
Sbjct: 138 EFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGG 194

Query: 171 GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230
           G IG+E A + V     V M+    H    ++   +A Y  +      ++ +    + +F
Sbjct: 195 GAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAF 253

Query: 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSN 288
               N +V AV   D      D+V+V +G++PNT   EG  +    KG I+V   +Q++ 
Sbjct: 254 --KGNERVEAVET-DKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNV 310

Query: 289 SSVYAVGDVAAFPLKLLGETRRL 311
             VYA GD A     +      +
Sbjct: 311 QDVYAAGDCATHYHVIKEIHDHI 333

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score =  175 bits (445), Expect = 1e-48
 Identities = 79/323 (24%), Positives = 143/323 (44%), Gaps = 47/323 (14%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           ++V GGVA G +     +R     E+ +         ER                 SF  
Sbjct: 39  IVVVGGVAGGASVAARLRRLSEEDEIIM--------VER-------------GEYISFAN 77

Query: 68  C-----VG---ANEERL---TPKWY-NEHGIELVLGTRVKSADVRRKTLV---TATGE-- 110
           C     +G      ++L   T +       +++ + + V   +   KT+      T E  
Sbjct: 78  CGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETY 137

Query: 111 TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
             +Y +LI++ GA+ +     G+   +A+ +  LR++ D +R+   +      +A VIGG
Sbjct: 138 NEAYDVLILSPGAKPIVPSIPGIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGG 195

Query: 171 GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230
           G+IG+E   +L    I VT+V      M      ++A+Y  E+ K+  V+ V    + + 
Sbjct: 196 GFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL 254

Query: 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSN 288
             + NG VV +    G+ + TDM+++ IG++P +SL +G  L L  +G IKV  + Q+S+
Sbjct: 255 --EENGAVVRLK--SGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSD 310

Query: 289 SSVYAVGDVAAFPLKLLGETRRL 311
             +YA+GD       +      +
Sbjct: 311 PHIYAIGDAIEVKDFVTETETMI 333

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score =  170 bits (434), Expect = 3e-47
 Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 61/340 (17%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           +++ GGVA G +A    +R     E+ +        +ER                 SF  
Sbjct: 4   ILIIGGVAGGASAAARARRLSETAEIIM--------FER-------------GEYVSFAN 42

Query: 68  C-----VG---ANEERL---TPKWY-NEHGIELVLGTRVKSADVRRKTLV---TATGE-- 110
           C     +    A    L   TP+ +     +E+ +   V + D   K +       G   
Sbjct: 43  CGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEY 102

Query: 111 TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
             SY  L+++ GA  +      + G D      LR++ D +R++  ++  +  +A V+GG
Sbjct: 103 QESYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGG 159

Query: 171 GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230
           G+IG+E   SL    I  T++      M      ++A +  +  + +GV    GT LS  
Sbjct: 160 GFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEV 218

Query: 231 DVDSNGKV-----------------VAVNLRDGNRLPTDMVVVGIGIRPNTSLF-EGQLT 272
                  V                 +++ L +G  L TD++++ IG+RP T L  +  L 
Sbjct: 219 SYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLA 278

Query: 273 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311
           + E GGIKV   +Q+S+ ++YAVGD       + G+   +
Sbjct: 279 IGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLV 318

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score =  166 bits (424), Expect = 9e-47
 Identities = 62/323 (19%), Positives = 124/323 (38%), Gaps = 53/323 (16%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           ++V G VA G       +R     ++ I        +E+              R  SF  
Sbjct: 4   IVVVGAVAGGATCASQIRRLDKESDIII--------FEK-------------DRDMSFAN 42

Query: 68  C-----VG---ANEERL---TPKWYNE-HGIELVLGTRVKSADVRRKTLV---TATGE-- 110
           C     +G    +       TP+ + +   I +     V + +  R+T+      T E  
Sbjct: 43  CALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQF 102

Query: 111 TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGG 170
             SY  LI++ GA A  L      G +++    LR+L D + +   +K+      +V+G 
Sbjct: 103 EESYDKLILSPGASANSL------GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGA 156

Query: 171 GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF 230
           GY+ +E   +L    ++ T++         L    +     +    + + +     +++ 
Sbjct: 157 GYVSLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAI 215

Query: 231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSN 288
           +    G  +      G     DM++ G+G  PN+   E   + L  KG I V  + +++ 
Sbjct: 216 N----GNEITFK--SGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNV 269

Query: 289 SSVYAVGDVAAFPLKLLGETRRL 311
            ++YA+GD+A    + +     +
Sbjct: 270 PNIYAIGDIATSHYRHVDLPASV 292

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 60/362 (16%), Positives = 113/362 (31%), Gaps = 72/362 (19%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           +++GG   A  AA    +      ++ +I++   + Y RP       LP     +     
Sbjct: 5   LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRP------ALPHVAIGVRDVDE 57

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT----ATGETISYKILIIATGA 123
                      +   E GI+   G  V+  D +   +       +     Y  +I+  GA
Sbjct: 58  LK-----VDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGA 111

Query: 124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASL-- 181
               L    + G   +    + +   A +L   ++S  GGN  +  G +           
Sbjct: 112 H---LATELVKGW-DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167

Query: 182 ------------------------------VINKINVTMVFPEAHCMARLFTPKIASYYE 211
                                         +++K++VT+  P  +      +P       
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVA 225

Query: 212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL 271
             Y   G+K V    +         ++V      GN +P D+ ++      N +L     
Sbjct: 226 SIYNQLGIKLVHNFKIKEIR---EHEIV---DEKGNTIPADITILLPPYTGNPALKNSTP 279

Query: 272 TL--EKGGIKVTGRLQSSN-SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 328
            L  + G I     + S    +VYAVGD  +  +  LG          A  + + A   +
Sbjct: 280 DLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGY--------LAVMTGRIAAQHL 331

Query: 329 ME 330
             
Sbjct: 332 AN 333

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 91.6 bits (228), Expect = 5e-20
 Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 26/208 (12%)

Query: 105 VTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
           V A G+    K LI+A GA    L+  G+                   L     S     
Sbjct: 166 VEAAGKVFKAKNLILAVGAGPGTLDVPGV-----NAKGVFDHATLVEELDYEPGS----T 216

Query: 165 AVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGV 219
            VV+GG    +E       N       M+         L      +  +Y  +  K +G+
Sbjct: 217 VVVVGGSKTAVEYGC--FFNATGRRTVML--VR--TEPLKLIKDNETRAYVLDRMKEQGM 270

Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNTS-LFE--GQLTL 273
           + + G+ ++  + D+NG+V AV     N   R+ TD V +G+G +P ++ L +  G    
Sbjct: 271 EIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLG 330

Query: 274 EKGGIKVTGRLQSSNSSVYAVGDVAAFP 301
            KG + V   LQ+S  +VYAVGD+   P
Sbjct: 331 PKGEVLVNEYLQTSVPNVYAVGDLIGGP 358

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 90.7 bits (226), Expect = 1e-19
 Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 38/206 (18%)

Query: 107 ATGETISYKILIIATGARALKLE----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSG 162
           A  E +    +++ATG+          E  +S S+           +A  L    +    
Sbjct: 149 AVKERLQADHILLATGSWPQMPAIPGIEHCIS-SN-----------EAFYLPEPPRR--- 193

Query: 163 GNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
              + +GGG+I +E A    +       VT+ +     + R F   I     +   + G+
Sbjct: 194 --VLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250

Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE----- 274
           + +     +   ++++G    V    G  L  D+V++ IG  P T+     L L      
Sbjct: 251 EIMTNENPAKVSLNTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTN----DLQLGNVGVK 305

Query: 275 ---KGGIKVTGRLQSSNSSVYAVGDV 297
              KGG++V    +++  ++YA+GD+
Sbjct: 306 LTPKGGVQVDEFSRTNVPNIYAIGDI 331

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 90.4 bits (225), Expect = 1e-19
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 37/252 (14%)

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE----EFGLSGSD 137
           +E+ I +       + D          G  I     +IA G + +       E  +S SD
Sbjct: 115 SENRILIKGTKDNNNKDNGPLNEEILEGRNI-----LIAVGNKPVFPPVKGIENTIS-SD 168

Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA 195
                   ++ ++ ++             ++G GYI +E     VI ++  +  +     
Sbjct: 169 E-----FFNIKESKKI------------GIVGSGYIAVELIN--VIKRLGIDSYIFARGN 209

Query: 196 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMV 254
             + R F   + +  E   K   +  V    +      S+  +  ++L DG      D V
Sbjct: 210 RIL-RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHV 267

Query: 255 VVGIGIRPNTS---LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL 311
           +  +G  P+T    L +  +      I V    ++S +++YAVGD          E   L
Sbjct: 268 IYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNL 327

Query: 312 EHVDSARKSAKH 323
             + +  +    
Sbjct: 328 LKLYNEERYLNK 339

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 89.9 bits (224), Expect = 1e-19
 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 47/211 (22%)

Query: 105 VTATGETISYKILIIATGARALKLE----EFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
           +   GETI+   ++IATG R    +    E+G+  SD               L  + +  
Sbjct: 123 LEVNGETITADHILIATGGRPSHPDIPGVEYGID-SD-----------GFFALPALPER- 169

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYY 214
                 V+G GYIG+E     VIN +       + H           F P I+    E  
Sbjct: 170 ----VAVVGAGYIGVELGG--VINGLGA-----KTHLFEMFDAPLPSFDPMISETLVEVM 218

Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
            ++G +     +  +   +++G +  + L DG     D ++  IG  P        + LE
Sbjct: 219 NAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPAND----NINLE 273

Query: 275 --------KGGIKVTGRLQSSNSSVYAVGDV 297
                   KG I V     ++   +YAVGD 
Sbjct: 274 AAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 87.6 bits (218), Expect = 9e-19
 Identities = 53/267 (19%), Positives = 86/267 (32%), Gaps = 45/267 (16%)

Query: 84  HGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
             I +V G  R K        L       + +   ++ATGA        GL  S      
Sbjct: 108 PAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESP----- 162

Query: 143 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMA 199
           Y     +A     + +        VIG   + +E A   A L      VT++        
Sbjct: 163 YW-TSTEALASDTIPERL-----AVIGSSVVALELAQAFARL---GSKVTVL-----ARN 208

Query: 200 RLFT---PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 256
            LF    P I       ++++G++ ++ T  S         V+         L  D ++V
Sbjct: 209 TLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTT---THGELRADKLLV 265

Query: 257 GIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 312
             G  PNT        G     +G I +   +++SN ++YA GD    P           
Sbjct: 266 ATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQ--------FV 317

Query: 313 HVDSARKSAKHAVAAIMEPDKTDKFDY 339
           +V  A  +   A   +         D 
Sbjct: 318 YV--AAAAGTRAAINMT--GGDAALDL 340

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 87.6 bits (218), Expect = 1e-18
 Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 48/231 (20%)

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE----EFGLSGSD 137
           + H + +       SA +     +          IL+ ATG+    L     +  ++ S+
Sbjct: 130 DNHTVLVRESADPNSAVLET---LDTE------YILL-ATGSWPQHLGIEGDDLCIT-SN 178

Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA---ASLVINKINVTMVFPE 194
                      +A  L    K      A+ +GGGYI +E A    +       V + +  
Sbjct: 179 -----------EAFYLDEAPKR-----ALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG 222

Query: 195 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 254
              + R F  ++     E  ++ G+        +    +++G    V    G     D+V
Sbjct: 223 DMIL-RGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRH-VVFESGAEADYDVV 280

Query: 255 VVGIGIRPNTSLFEGQLTLE--------KGGIKVTGRLQSSNSSVYAVGDV 297
           ++ IG  P +      L LE         G IKV    +++  ++YA+GDV
Sbjct: 281 MLAIGRVPRSQ----TLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 45/209 (21%), Positives = 87/209 (41%), Gaps = 42/209 (20%)

Query: 105 VTATGETISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKS 159
           + A+G+T++ + ++IA G      +     E  ++ S+           +A  L  + +S
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT-SN-----------EAFDLPALPES 172

Query: 160 CSGGNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216
                 ++ GGGYI +E A     L    +  T+++     +   F   +        + 
Sbjct: 173 -----ILIAGGGYIAVEFANIFHGL---GVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEE 223

Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-- 274
           KG++ +   ++ S   D++G+ V         +  D V++ +G  PNT+     L LE  
Sbjct: 224 KGIRILCEDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTN----GLGLEAA 278

Query: 275 ------KGGIKVTGRLQSSNSSVYAVGDV 297
                  G I V    ++S   +YA+GDV
Sbjct: 279 GVRTNELGAIIVDAFSRTSTPGIYALGDV 307

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 46/232 (19%), Positives = 85/232 (36%), Gaps = 40/232 (17%)

Query: 82  NEHGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLE-----EFGLSG 135
            +  +++V G  R              T E  S   +++ATG +A+  E     E G   
Sbjct: 116 EKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFELGTD- 174

Query: 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195
           SD              RL    K       VV+G GYIG+E A   V + +       E 
Sbjct: 175 SD-----------GFFRLEEQPKK-----VVVVGAGYIGIELAG--VFHGLGS-----ET 211

Query: 196 HCMARL------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 249
           H + R       F   I +   ++Y  +G+   K + +   + +     + +++ D   +
Sbjct: 212 HLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSI 271

Query: 250 PT-DMVVVGIGIRPNTSL---FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
              D ++  IG + +  +     G        I       ++  ++Y++GDV
Sbjct: 272 DDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 86.4 bits (215), Expect = 3e-18
 Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 43/209 (20%)

Query: 105 VTATGETISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKS 159
           ++ TGE IS + ++IATGA+ +        +  L+ S+           +   L  + KS
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT-SN-----------EIFDLEKLPKS 193

Query: 160 CSGGNAVVIGGGYIGMECA---ASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS 216
                 V++GGGYIG+E A     L    +  T++      + R F   +     +   +
Sbjct: 194 -----IVIVGGGYIGVEFANIFHGL---GVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVA 244

Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-- 274
           KG+  +    +S   V S      V L +G  +  D V++  G  PNT+     L LE  
Sbjct: 245 KGISIIYEATVSQ--VQSTENCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERA 298

Query: 275 ------KGGIKVTGRLQSSNSSVYAVGDV 297
                  G + V  ++ ++ S ++AVGDV
Sbjct: 299 GVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 85.7 bits (213), Expect = 4e-18
 Identities = 54/266 (20%), Positives = 91/266 (34%), Gaps = 53/266 (19%)

Query: 84  HGIELVLGT----RVKSADVRRKTLVTA---TGETISYKILIIATGARALKLEEFGLSGS 136
            G++++ G            R +   TA   +       ++++ATGA    L        
Sbjct: 108 MGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQP--- 164

Query: 137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPE 194
           D E +   R       L  +         +V+G G  G E        ++   VT+V   
Sbjct: 165 DGERILTWRQ---LYDLDALPDH-----LIVVGSGVTGAEFVD--AYTELGVPVTVV--A 212

Query: 195 AHCMARL---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT 251
           +     +        A   EE +  +GV+  K    +S  V   G  V V + DG  +  
Sbjct: 213 S--QDHVLPYEDADAALVLEESFAERGVRLFKNARAAS--VTRTGAGVLVTMTDGRTVEG 268

Query: 252 DMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFPLK 303
              ++ IG  PNT    G L LE+ GI++            ++  + +YA GD       
Sbjct: 269 SHALMTIGSVPNT---SG-LGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP- 323

Query: 304 LLGETRRLEHVDSARKSAKHAVAAIM 329
                  L  V  A    + A+   +
Sbjct: 324 -------LASV--AAMQGRIAMYHAL 340

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 84.5 bits (210), Expect = 1e-17
 Identities = 54/255 (21%), Positives = 92/255 (36%), Gaps = 61/255 (23%)

Query: 105 VTATGETISYKILIIATGARALKLE----EFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
           +   G+ +S   ++IATG R +       E G++ SD               L    K  
Sbjct: 122 IEVEGQRLSADHIVIATGGRPIVPRLPGAELGIT-SD-----------GFFALQQQPKR- 168

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------FTPKIASYYEEYY 214
                 +IG GYIG+E A   ++          E   +A        F P +++   E  
Sbjct: 169 ----VAIIGAGYIGIELAG--LLRSFGS-----EVTVVALEDRLLFQFDPLLSATLAENM 217

Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE 274
            ++G++      +++ + D+ G  + V          D V+  +G  PNT      L LE
Sbjct: 218 HAQGIETHLEFAVAALERDAQGTTL-VAQDGTRLEGFDSVIWAVGRAPNTR----DLGLE 272

Query: 275 KGGIKVTGR--------LQSSNSSVYAVGDVAAFPLKLLGETRRLE--HVDSARKSAKHA 324
             GI+V             ++   VYA+GD+          T R +   V  A  + +  
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI----------TGRDQLTPV--AIAAGRRL 320

Query: 325 VAAIMEPDKTDKFDY 339
              + +     K DY
Sbjct: 321 AERLFDGQSERKLDY 335

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 56/324 (17%), Positives = 95/324 (29%), Gaps = 51/324 (15%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VI+G G     AA E  +      E+ +IS         P        P           
Sbjct: 8   VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVP------SNPWVGVGWKERDD 60

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                       +    GI  +  +  +  D   + +  A G T+ Y  L+IATG    K
Sbjct: 61  IA-----FPIRHYVERKGIHFIAQS-AEQIDAEAQNITLADGNTVHYDYLMIATGP---K 111

Query: 128 LEEFGLSGSD-----AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECA---- 178
           L    + GSD      +++C +     A               +VIG    G  C     
Sbjct: 112 LAFENVPGSDPHEGPVQSICTVDHAERAFAEYQ--ALLREPGPIVIGAM-AGASCFGPAY 168

Query: 179 --ASLV------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG 224
             A +V            I         P    +             +  K +G++    
Sbjct: 169 EYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTN 228

Query: 225 TVLSSFDVDSNGKVVAVNLRDGNR-----LPTDMVVVGIGIRPNTSLFEGQLTLEKGG-I 278
             ++   V+ N   V      G       LP    ++    +   ++   +     GG +
Sbjct: 229 CKVTK--VEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFV 286

Query: 279 KVTGRLQSSN-SSVYAVGDVAAFP 301
            V    +S   ++++A G   A P
Sbjct: 287 LVDEHQRSKKYANIFAAGIAIAIP 310

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 81.4 bits (202), Expect = 9e-17
 Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 41/208 (19%)

Query: 107 ATGETISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
           +   TI+ +  +IA G R    +     E+G++ SD           D   L        
Sbjct: 144 SGERTITAQTFVIAVGGRPRYPDIPGAVEYGIT-SD-----------DLFSLDREPGK-- 189

Query: 162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---L--FTPKIASYYEEYYKS 216
               +V+G GYIG+ECA    +  +       E   M R   L  F  ++A       + 
Sbjct: 190 ---TLVVGAGYIGLECAG--FLKGLGY-----EPTVMVRSIVLRGFDQQMAELVAASMEE 239

Query: 217 KGVKFVKGTVLSSFDVDSNGKVVA----VNLRDGNRLPTDMVVVGIGIRPNTS---LFEG 269
           +G+ F++ TV  S +   +GK++     V   + +    D V+  IG +       L   
Sbjct: 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNA 299

Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDV 297
            +T++K  I V  +  ++ +++YAVGD+
Sbjct: 300 GVTVQKDKIPVDSQEATNVANIYAVGDI 327

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 39/239 (16%)

Query: 85  GIELVLGTRVKS---ADVRRKTLVTATGETISYKILIIATGA-----RALKLEEFGLSGS 136
             ++VL   V      D       T TG     + ++IA G      R L      +   
Sbjct: 88  NPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLG-NIDHL 146

Query: 137 DAENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV---- 191
              +V Y ++ + D            G   V++GGG   ++    L+ N  +VT+V    
Sbjct: 147 TGSSVYYAVKSVED----------FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH 196

Query: 192 -FPEA-HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGN- 247
            F         +         E    +  +     T ++S +  +     V +   DG+ 
Sbjct: 197 EFQGHGKTAHEV---------ERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSK 247

Query: 248 -RLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
             +  D +++ IG + N        L L +  + V   +++S   +YA GD+A +P KL
Sbjct: 248 WTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 67/232 (28%), Positives = 99/232 (42%), Gaps = 42/232 (18%)

Query: 85  GIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY 143
           GI    GT R  S     K LV  TGE +  + ++IATG+  L      +   D E V  
Sbjct: 103 GIARHQGTARFLSER---KVLVEETGEELEARYILIATGSAPLIPPWAQV---DYERVV- 155

Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL 201
                +A     V K       +V+GGG IG+E     V +++   V ++  E   M R 
Sbjct: 156 --TSTEALSFPEVPKR-----LIVVGGGVIGLELGV--VWHRLGAEVIVL--EY--MDR- 201

Query: 202 FTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
             P    +++   E  +K +G+    G  +++  V    K   V L  G  L  D V+V 
Sbjct: 202 ILPTMDLEVSRAAERVFKKQGLTIRTGVRVTA--VVPEAKGARVELEGGEVLEADRVLVA 259

Query: 258 IGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           +G RP T   EG L+LE  G+    R        L++    +YA+GDV   P
Sbjct: 260 VGRRPYT---EG-LSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 52/243 (21%), Positives = 91/243 (37%), Gaps = 56/243 (23%)

Query: 82  NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG------ 135
            +  IE++ G         + T +  +G+  +   ++IATG       E  + G      
Sbjct: 119 TKSHIEIIRG-HAAFTSDPKPT-IEVSGKKYTAPHILIATGGMPSTPHESQIPGASLGIT 176

Query: 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195
           SD              +L  +        +V++G GYI +E A   +++ +       + 
Sbjct: 177 SD-----------GFFQLEELPGR-----SVIVGAGYIAVEMAG--ILSALGS-----KT 213

Query: 196 HCMARL------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL 249
             M R       F   I++   E  ++ GV+ +K + +       +G  V++      RL
Sbjct: 214 SLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRL 273

Query: 250 PT-------DMVVVGIGIRPNTSLFEGQLTLE--------KGGIKVTGRLQSSNSSVYAV 294
           P        D ++  IG  PNT      L+L         KG I V     ++   +YAV
Sbjct: 274 PVMTMIPDVDCLLWAIGRVPNTK----DLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAV 329

Query: 295 GDV 297
           GDV
Sbjct: 330 GDV 332

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 52/245 (21%)

Query: 83  EHGIELVLGTRVKS-----ADVRRKTLVTATGETISYKILIIATGARALKL-----EEFG 132
           ++ ++++             +     + TA+G  +  + +IIATGA+   +     +++ 
Sbjct: 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYR 338

Query: 133 LSGSDAENVCYLRDLADANRLVNVMKSCS--------GGNAVVIGGGYIGMECAASLVIN 184
             G     V Y                C         G    VIGGG  G+E A  L   
Sbjct: 339 TKG-----VTY----------------CPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGI 377

Query: 185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244
             +VT++         +   ++    ++    K V  +     +    D + KVV +  R
Sbjct: 378 VEHVTLL----EFAPEMKADQVLQ--DKVRSLKNVDIILNAQTTEVKGDGS-KVVGLEYR 430

Query: 245 DGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGDVA 298
           D        +    + V IG+ PNT   EG L   + G I +  + ++S   V+A GD  
Sbjct: 431 DRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCT 490

Query: 299 AFPLK 303
             P K
Sbjct: 491 TVPYK 495

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 53/306 (17%), Positives = 84/306 (27%), Gaps = 62/306 (20%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           ++VG G +   AA     RG             V   E      G +  E+   LP    
Sbjct: 395 LVVGAGPSGLEAARALGVRGYD-----------VVLAEAGRDLGGRVTQES--ALP---- 437

Query: 68  CVGANEERLTPKWYNE-----HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
             G +      ++          +E+   + +   D+              ++ +I ATG
Sbjct: 438 --GLSAWGRVKEYREAVLAELPNVEIYRESPMTGDDI----------VEFGFEHVITATG 485

Query: 123 ARALK-----LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGM 175
           A              L  ++   V    DL              G   VV      Y+G 
Sbjct: 486 ATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPD-------GKKVVVYDDDHYYLGG 538

Query: 176 ECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 235
             A  L      V++V P A   +        +  +      GV  V    + +      
Sbjct: 539 VVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---A 595

Query: 236 GKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYA 293
           G V   +        L  D VV+     P   L+   +     G            SV  
Sbjct: 596 GGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRG 646

Query: 294 VGDVAA 299
           +GD  A
Sbjct: 647 IGDAWA 652

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 75.3 bits (186), Expect = 1e-14
 Identities = 53/242 (21%), Positives = 84/242 (34%), Gaps = 55/242 (22%)

Query: 82  NEHGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKL------EEFGLS 134
            +  ++              R          +S + ++IATG R           E+G++
Sbjct: 115 QDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGIT 174

Query: 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194
            SD           D   L            +V+G  Y+ +ECA    +  I +     +
Sbjct: 175 -SD-----------DIFWLKESPGK-----TLVVGASYVALECAG--FLTGIGL-----D 210

Query: 195 AHCMAR---L--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR- 248
              M R   L  F  +++S   E+ +S G +F+KG V S        ++  V   D    
Sbjct: 211 TTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQ-VTWEDHASG 269

Query: 249 ----LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR---------LQSSNSSVYAVG 295
                  D V+  IG  P T      L LEK GI    +           +S   +YA+G
Sbjct: 270 KEDTGTFDTVLWAIGRVPETR----TLNLEKAGISTNPKNQKIIVDAQEATSVPHIYAIG 325

Query: 296 DV 297
           DV
Sbjct: 326 DV 327

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 74.9 bits (185), Expect = 1e-14
 Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 38/216 (17%)

Query: 102 KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS 161
            TL       +  K ++IATG+R    E           +       +   L ++ KS  
Sbjct: 125 HTLQVDDHSQVIAKRIVIATGSRPNYPEFLAA---AGSRLL---TNDNLFELNDLPKS-- 176

Query: 162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKS 216
                V G G IG+E      ++++   V +          +      ++  Y E+ +  
Sbjct: 177 ---VAVFGPGVIGLELGQ--ALSRLGVIVKVF--GR--SGSVANLQDEEMKRYAEKTFN- 226

Query: 217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLE 274
           +   F     + S     +   V    + G +       V+   G + N    +  L LE
Sbjct: 227 EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DK-LGLE 282

Query: 275 KGGIKVTGR---------LQSSNSSVYAVGDVAAFP 301
              I++  +         LQ+S   ++  GD     
Sbjct: 283 NTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score = 73.0 bits (180), Expect = 2e-14
 Identities = 50/237 (21%), Positives = 85/237 (35%), Gaps = 37/237 (15%)

Query: 85  GIELVLGTRV----KSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA-- 138
                LG R     +  D     + T+ G   + K +IIA G  A +    G  G     
Sbjct: 79  NPVYSLGERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFE 136

Query: 139 -ENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMV----- 191
              V Y ++  A+            G   +++GGG   ++ A +L+     +T++     
Sbjct: 137 GRGVYYAVKSKAE----------FQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ 186

Query: 192 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK-VVAVNLRDGN--R 248
           F  AH               + ++   ++ +    L   + D   +  V  + +      
Sbjct: 187 F-RAH-------EASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELA 238

Query: 249 LPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           L  D V++  G            L LEK  IKV   + +S   VYA GD+  +P KL
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 43/236 (18%)

Query: 84  HGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
           + I  + G      A+     L     E++++   IIATG+    +    LS      V 
Sbjct: 104 NKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA---NVVT 160

Query: 143 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR 200
           Y     +      + KS      ++ G G IGME     V+     +VT+V  E   + R
Sbjct: 161 Y----EEQILSRELPKS-----IIIAGAGAIGMEFGY--VLKNYGVDVTIV--EF--LPR 205

Query: 201 LFTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDM 253
              P     ++   E+ +K  GV  +  T + S  +   G  V V +        L  + 
Sbjct: 206 -ALPNEDADVSKEIEKQFKKLGVTILTATKVES--IADGGSQVTVTVTKDGVAQELKAEK 262

Query: 254 VVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           V+  IG  PN    EG   L+K G+ +T R        ++++   +YA+GDV    
Sbjct: 263 VLQAIGFAPNV---EG-YGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 27/223 (12%), Positives = 59/223 (26%), Gaps = 38/223 (17%)

Query: 92  TRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADAN 151
             +         +VT        + +++ATG +        +     E   Y + L    
Sbjct: 84  VMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNV----RE--YYGKSLF--- 134

Query: 152 RLVNVMKSC--------SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 203
                  SC             ++I            LV N     ++    +      +
Sbjct: 135 -------SCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGN----ELS 183

Query: 204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 263
             I     +   +K +  +  ++  +   +  G +  V    G R+      +       
Sbjct: 184 QTIM----DELSNKNIPVITESI-RTLQGE-GGYLKKVEFHSGLRIERAGGFIVPTFFRP 237

Query: 264 TSLFEGQLTL---EKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303
               E QL       G   +    ++S  ++Y  G+       
Sbjct: 238 NQFIE-QLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 72.9 bits (180), Expect = 6e-14
 Identities = 58/235 (24%), Positives = 90/235 (38%), Gaps = 40/235 (17%)

Query: 85  GIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY 143
            +  V G  +  S        +      +  K +IIATG+    L    +   D + +  
Sbjct: 110 KVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTI---DEKKIV- 165

Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL 201
                 A  L  + K       VVIG GYIG+E  +  V  +I   VT+V  E    +  
Sbjct: 166 --SSTGALALSEIPKK-----LVVIGAGYIGLEMGS--VWGRIGSEVTVV--EF--ASE- 211

Query: 202 FTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT---DMV 254
             P    +I   ++   + +G+KF   T +   D   +G  + V    G        D+V
Sbjct: 212 IVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVV 271

Query: 255 VVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           +V  G  P T    G L L+K G++              ++ S VYA+GDV   P
Sbjct: 272 LVSAGRTPFT---SG-LNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 72.6 bits (179), Expect = 8e-14
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 38/236 (16%)

Query: 84  HGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
           + I+   GT +V        T      + +  K ++IATG+    +    ++  D + + 
Sbjct: 128 NKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGIPGVEVA-FDEKTIV 186

Query: 143 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR 200
                  A  L  V  S      +V+GGG IG+E  +  V  ++   VT+V  E      
Sbjct: 187 ---SSTGALALEKVPAS-----MIVVGGGVIGLELGS--VWARLGAKVTVV--E---FLD 231

Query: 201 LFTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDM 253
                   ++A   +     +G+ F  G  ++      +G  V      G     L  ++
Sbjct: 232 TILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEV 291

Query: 254 VVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           V++  G +P+T   +G L L K G+ +  R         Q+S + VYA+GDV   P
Sbjct: 292 VLIATGRKPST---DG-LGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 49/247 (19%), Positives = 94/247 (38%), Gaps = 56/247 (22%)

Query: 83  EHGIELVLGTRVKS-----ADVRRKTLVTATGETISYKILIIATGARALKL-----EEFG 132
           E+ ++++             +     + TA+G  +  + +I+ATGA+   +     +++ 
Sbjct: 68  EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYR 127

Query: 133 LSGSDAENVCYLRDLADANRLVNVMKSCS--------GGNAVVIGGGYIGMECAASLVIN 184
             G     V Y                C         G    VIGGG  G+E  A++ + 
Sbjct: 128 TKG-----VTY----------------CPHCDGPLFKGKRVAVIGGGNSGVE--AAIDLA 164

Query: 185 KI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 242
            I  +VT++         +   ++    ++    K V  +     +    D + KVV + 
Sbjct: 165 GIVEHVTLL----EFAPEMKADQVLQ--DKLRSLKNVDIILNAQTTEVKGDGS-KVVGLE 217

Query: 243 LRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVYAVGD 296
            RD        +    + V IG+ PNT+  EG +   + G I +  + +++   V+A GD
Sbjct: 218 YRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGD 277

Query: 297 VAAFPLK 303
               P K
Sbjct: 278 CTTVPYK 284

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 48/243 (19%), Positives = 86/243 (35%), Gaps = 55/243 (22%)

Query: 82  NEHGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLE-----EFGLSG 135
            E  +       +       + T      +  S +  +IATG R   L      E+ +S 
Sbjct: 141 REKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS- 199

Query: 136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 195
           SD           D   L            +V+G  Y+ +ECA    +  I +     + 
Sbjct: 200 SD-----------DLFSLPYCPGK-----TLVVGASYVALECAG--FLAGIGL-----DV 236

Query: 196 HCMAR---L--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK--VVAVNLRDGN- 247
             M R   L  F   +A+   E+ +  G+KF++  V    +    G    + V  +  N 
Sbjct: 237 TVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNS 296

Query: 248 ----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL---------QSSNSSVYAV 294
                   + V++ IG    T     ++ LE  G+K+  +          Q++   +YA+
Sbjct: 297 EEIIEGEYNTVMLAIGRDACTR----KIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAI 352

Query: 295 GDV 297
           GD+
Sbjct: 353 GDI 355

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 69.9 bits (172), Expect = 5e-13
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 42/235 (17%)

Query: 85  GIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLE----EFGLSGSDAE 139
            +    G  ++K                   + +IIA+GA   KL     E+ L+  D  
Sbjct: 103 TLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDI- 161

Query: 140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC 197
                           + +       V+IG GYIG+E A+  +   +     ++  E   
Sbjct: 162 -------FGYKTSFRKLPQD-----MVIIGAGYIGLEIAS--IFRLMGVQTHII--E--- 202

Query: 198 MARLFTPKIASYYE------EYYKSKGVKFVKGT-VLSSFDVDSNGKVVAVNLRDGNR-- 248
                  +     E             +     + V     +  +   V  + +DG++  
Sbjct: 203 ----MLDRALITLEDQDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKS 258

Query: 249 LPTDMVVVGIGIRPNTS--LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 301
           + T+ VV+  G RP       E  L++ K GI V   ++++  +V+A GD     
Sbjct: 259 IFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGDANGLA 313

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 31/232 (13%)

Query: 85  GIELVLGTRVKSADVR--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA---E 139
              + L   V+S + +      +    ET   K +II  G  A K  +  L  ++    +
Sbjct: 81  DQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGK 140

Query: 140 NVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 198
           N+ Y + DL             +G    ++GGG   ++ A  L      V+++    H  
Sbjct: 141 NLHYFVDDLQK----------FAGRRVAILGGGDSAVDWALMLEPIAKEVSII----HRR 186

Query: 199 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDM 253
            +    +   +  E   +  V  +   V +   +    K+  + L +        L  D 
Sbjct: 187 DKF---RAHEHSVENLHASKVNVLTPFVPAE--LIGEDKIEQLVLEEVKGDRKEILEIDD 241

Query: 254 VVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL 304
           ++V  G   +    +   L +EK  I V   ++++    +A GD+  +  K+
Sbjct: 242 LIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGKV 293

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 69.5 bits (171), Expect = 7e-13
 Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 34/227 (14%)

Query: 84  HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY 143
           HG+++V G     A V     V   G+ I  + L++ATG+ +++L    L       V  
Sbjct: 109 HGVKVVHGW----AKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLG----GPVI- 159

Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL 201
                +A     + +       VV+GGGYIG+E        K+   V++V  EA    R+
Sbjct: 160 --SSTEALAPKALPQH-----LVVVGGGYIGLELGI--AYRKLGAQVSVV--EA--RERI 206

Query: 202 ---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVG 257
              +  ++ +   E  K  G+    G  +  ++   NG ++A + + G  RL  D V+V 
Sbjct: 207 LPTYDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVA 263

Query: 258 IGIRPNTS---LFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP 301
           +G RP T    L    L +    I +  R Q+S  +V+A+GDVA  P
Sbjct: 264 VGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP 310

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 69.7 bits (171), Expect = 7e-13
 Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 51/214 (23%)

Query: 110 ETISYKILIIATGARALKLE-----EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN 164
            TI+   +I+ATG R    E     E+G++ SD           D   L           
Sbjct: 246 STITGNKIILATGERPKYPEIPGAVEYGIT-SD-----------DLFSLPYFPGK----- 288

Query: 165 AVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
            +VIG  Y+ +ECA    +  +  +VT++      + R F  ++A    +Y ++ GVKF 
Sbjct: 289 TLVIGASYVALECAG--FLASLGGDVTVMVRSI--LLRGFDQQMAEKVGDYMENHGVKFA 344

Query: 223 KGTVLSSFDVDSNGKV---------VAVNLRDGNRLPT--DMVVVGIGIRPNTSLFEGQL 271
           K  V                     V  +  DG +     + V+  +G  P  S    ++
Sbjct: 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS----KV 400

Query: 272 TLE--------KGGIKVTGRLQSSNSSVYAVGDV 297
             E         G +  T   Q++ S+VYA+GD+
Sbjct: 401 LCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDI 434

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 52/242 (21%), Positives = 85/242 (35%), Gaps = 55/242 (22%)

Query: 85  GIELVLGTRVKSADVRRKT-LVTATGETISYKILIIATGARALKL-----EEFGLSGSDA 138
                    V+S    +    +    +T   K +II TG     L      E+   G   
Sbjct: 86  AKIREGV-EVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKG--- 141

Query: 139 ENVCYLRDLADANRLVNVMKSCS--------GGNAVVIGGGYIGMECAASLVINKI--NV 188
               Y                CS        G   V IGGG  G    A++ +++   NV
Sbjct: 142 --TSY----------------CSTCDGYLFKGKRVVTIGGGNSGAI--AAISMSEYVKNV 181

Query: 189 TMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN- 247
           T++      M +         Y +  K + + ++    ++    D   KV  V  +D   
Sbjct: 182 TII----EYMPKYMCENA---YVQEIKKRNIPYIMNAQVTEIVGDGK-KVTGVKYKDRTT 233

Query: 248 ----RLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGG-IKVTGRLQSSNSSVYAVGDVAAFP 301
                + TD V + +G+ P TS  +   + L++ G I V  R ++S   VYA GDV +  
Sbjct: 234 GEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGN 293

Query: 302 LK 303
             
Sbjct: 294 FA 295

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 67.2 bits (165), Expect = 3e-12
 Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 51/220 (23%)

Query: 105 VTATGETISYKILIIATGARALKLE--EFG---LSGSDAENVCYLRDLADA--NRLVNVM 157
           V   GE    K LI+ATG+  L+L+   FG      + A     L  + +    RL+   
Sbjct: 123 VEVGGERYGAKSLILATGSEPLELKGFPFGEDVWDSTRA-----L-KVEEGLPKRLL--- 173

Query: 158 KSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEE 212
                    VIGGG +G+E     V  ++   VT++  E   M  +     P+ A+    
Sbjct: 174 ---------VIGGGAVGLELGQ--VYRRLGAEVTLI--EY--MPEILPQGDPETAALLRR 218

Query: 213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEG 269
             + +G++    T    ++   +G  V +   +G     +  D V+V +G +P T     
Sbjct: 219 ALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG--- 275

Query: 270 QLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
            L LEK G+KV  R        +++S   VYA+GD A  P
Sbjct: 276 -LGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPP 314

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 50/239 (20%), Positives = 88/239 (36%), Gaps = 48/239 (20%)

Query: 85  GIELVLGT-------RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD 137
            +    G        +++   V            +  K +I+ATG+         +   D
Sbjct: 110 KVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEI---D 166

Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA 195
            E +        A  L  + K        +IGGG IG+E  +  V +++   VT+V  E 
Sbjct: 167 EEKIV---SSTGALSLKEIPKR-----LTIIGGGIIGLEMGS--VYSRLGSKVTVV--E- 213

Query: 196 HCMARLFTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--- 248
                        ++A   +++ K +G+ F   T + S   + +  VV + + D      
Sbjct: 214 --FQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ 271

Query: 249 --LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDV 297
             L  ++++V +G RP      G L  EK G++V  R          S    +  VGDV
Sbjct: 272 ENLEAEVLLVAVGRRPYI---AG-LGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score = 66.8 bits (164), Expect = 4e-12
 Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 38/234 (16%)

Query: 84  HGIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
           +G+ L  G  ++ +      T    + + +  + +I+A+G++ +++    +   D + + 
Sbjct: 112 NGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPV---DQDVIV 168

Query: 143 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR 200
              D   A    NV          VIG G IG+E  +  V  ++   VT++  E      
Sbjct: 169 ---DSTGALDFQNVPGK-----LGVIGAGVIGLELGS--VWARLGAEVTVL--E---AMD 213

Query: 201 LFTP----KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVV 255
            F P    ++A   ++    +G+K + G  ++  +V +    V     +G +    D ++
Sbjct: 214 KFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 273

Query: 256 VGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           V +G RP T      L     G+ +  R          +S   VYA+GDV    
Sbjct: 274 VAVGRRPVT---TD-LLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 41/227 (18%)

Query: 93  RVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA 150
            V             TG  + +++K  IIA G+R  KL        +   +    D + A
Sbjct: 126 EVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFI----PEDPRII---DSSGA 178

Query: 151 NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMARLFTP---- 204
             L  V         ++IGGG IG+E     V + +   + +V  E   M          
Sbjct: 179 LALKEVPGK-----LLIIGGGIIGLEMGT--VYSTLGSRLDVV--E---MMDGLMQGADR 226

Query: 205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRP 262
            +   +++  + +    +  T   + +   +G  V     +  +     D V+V  G  P
Sbjct: 227 DLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAP 286

Query: 263 NTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           N  L    ++ EK G+ VT R        ++++   +YA+GD+   P
Sbjct: 287 NGKL----ISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 36/234 (15%)

Query: 85  GIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY 143
            +  V G  ++   +    T      + I  K ++IATG+         +   D + +  
Sbjct: 111 KVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITI---DEDTIV- 166

Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA--HCMA 199
                 A  L  V +       VVIG G IG+E  +  V  ++  +VT V  E   H   
Sbjct: 167 --SSTGALSLKKVPEK-----MVVIGAGVIGVELGS--VWQRLGADVTAV--EFLGHVGG 215

Query: 200 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-VAVNLRDGNRLPT---DMVV 255
                +I+  ++   + +G KF   T ++     S+GK+ V++    G +      D+++
Sbjct: 216 VGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLL 275

Query: 256 VGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFP 301
           V IG RP T      L LE+ GI++  R         Q+   ++YA+GDV A P
Sbjct: 276 VCIGRRPFTKN----LGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score = 64.8 bits (159), Expect = 2e-11
 Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 48/235 (20%)

Query: 85  GIELVLGT-RVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCY 143
            +    G    ++A   R   +    E +  K  IIATG+   +L        D + V  
Sbjct: 107 KVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPF---DEKVVL- 162

Query: 144 LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA------ 195
                 A  L  V K+      VVIGGG IG+E  +  V  ++   VT+V  E       
Sbjct: 163 --SSTGALALPRVPKT-----MVVIGGGVIGLELGS--VWARLGAEVTVV--EFAPRCAP 211

Query: 196 ---HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LP 250
                +       +A       K++ +KF+  T +     + +   + V  ++G R  + 
Sbjct: 212 TLDEDVTNALVGALA-------KNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVT 264

Query: 251 TDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSSNSSVYAVGDV 297
            + ++V +G RP T      L L+K  +    R         ++S   VYA+GDV
Sbjct: 265 CEALLVSVGRRPFTGG----LGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 55/332 (16%), Positives = 90/332 (27%), Gaps = 103/332 (31%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
            +VG G A    A+    RG             V  ++  +   G       A+      
Sbjct: 377 AVVGAGPAGLAFAINAAARGHQ-----------VTLFDAHSEIGGQFNI---AKQIPGK- 421

Query: 68  CVGANEERLTPKWY----NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA 123
                E   T ++Y       G+ L L   V +  ++            ++   I+A+G 
Sbjct: 422 ----EEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQ------------AFDETILASGI 465

Query: 124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI 183
                    + G D   V    D+      V       G    +IG G IG + A  L  
Sbjct: 466 VPRTPP---IDGIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQ 515

Query: 184 NKINVTMVFPE-------------AHCMARLFTPKIASYYEEYY---------------- 214
              + +                  A  ++        S  +                   
Sbjct: 516 PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTT 575

Query: 215 --------KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNT 264
                    S+GVK + G      D D         + +G    L  D VV+  G  PN 
Sbjct: 576 GWIHRTTLLSRGVKMIPGVSYQKIDDDG-----LHVVINGETQVLAVDNVVICAGQEPNR 630

Query: 265 SLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGD 296
           +L +               L  S  +V+ +G 
Sbjct: 631 ALAQP--------------LIDSGKTVHLIGG 648

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 49/250 (19%)

Query: 73  EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFG 132
           E ++T         +L LG +  +AD      V   G       +IIATGAR        
Sbjct: 448 ETQITKLLKKNKESQLALGQKPMTAD-----DVLQYG----ADKVIIATGARWNTDGTNC 498

Query: 133 LSG-------SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGG--YIGMECAASLVI 183
           L+        +   +      + D  + +       G   V++     ++    A  L  
Sbjct: 499 LTHDPIPGADASLPDQLTPEQVMDGKKKI-------GKRVVILNADTYFMAPSLAEKLAT 551

Query: 184 NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS--------- 234
               VT+V          FT +  +     ++   V+ +     S  +            
Sbjct: 552 AGHEVTIVSGVHLANYMHFTLEYPNMMRRLHE-LHVEELGDHFCSRIEPGRMEIYNIWGD 610

Query: 235 ------NGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS 286
                  G  V+    + +   +  D +V+  G     +L+     L+    +     ++
Sbjct: 611 GSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE---LKARESEWA---EN 664

Query: 287 SNSSVYAVGD 296
               +Y +GD
Sbjct: 665 DIKGIYLIGD 674

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 40/209 (19%)

Query: 109 GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVI 168
            +T ++K  IIATG+R ++L  F  S      +    D   A  L  V KS      VVI
Sbjct: 129 AQTYTFKNAIIATGSRPIELPNFKFS----NRIL---DSTGALNLGEVPKS-----LVVI 176

Query: 169 GGGYIGMECAASLVINKI--NVTMVFPEAHCMARL---FTPKIASYYEEYYKSKGVKFVK 223
           GGGYIG+E             VT++  E      +   F  ++A+  ++  K KGV+ V 
Sbjct: 177 GGGYIGIELGT--AYANFGTKVTIL--EG--AGEILSGFEKQMAAIIKKRLKKKGVEVVT 230

Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
             +      +     V V          +  D V+V +G RPNT      L LE+ GIK+
Sbjct: 231 NALAKG--AEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDE----LGLEQIGIKM 284

Query: 281 TGR--------LQSSNSSVYAVGDVAAFP 301
           T R         ++S  +++A+GD+   P
Sbjct: 285 TNRGLIEVDQQCRTSVPNIFAIGDIVPGP 313

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 46/240 (19%), Positives = 83/240 (34%), Gaps = 62/240 (25%)

Query: 85  GIELVLGTRVKSADV--RRKTLVTATGETISYKILIIATGARALKL-----EEFGLSGSD 137
            + ++L   V+  +       + T          +I+  G +  KL     +EF   G  
Sbjct: 84  EVPVLLDI-VEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGIS 142

Query: 138 AENVCYLRDLADA----NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMV 191
             +V       DA    NR+V            VIGGG   +E A   +++     V ++
Sbjct: 143 YCSVA------DAPLFKNRVV-----------AVIGGGDSALEGA--EILSSYSTKVYLI 183

Query: 192 -----FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 244
                F         +   P +             +FV  +V+   ++  +  V  V + 
Sbjct: 184 HRRDTFKAQPIYVETVKKKPNV-------------EFVLNSVVK--EIKGDKVVKQVVVE 228

Query: 245 D-----GNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGG-IKVTGRLQSSNSSVYAVGDV 297
           +        L  + V + IG  P T   +   +  +  G IKV   +++S   V+A GD 
Sbjct: 229 NLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 66/353 (18%), Positives = 114/353 (32%), Gaps = 67/353 (18%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V+VGGG   G  A ++ K   P  E+ +I                            ++T
Sbjct: 6   VVVGGG-TGGATAAKYIKLADPSIEVTLIEPNTD-----------------------YYT 41

Query: 68  C-----VGANEERL-----TPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKIL 117
           C     V   + +L            HGI++V        D  +K + TA G    Y   
Sbjct: 42  CYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRC 100

Query: 118 IIATGARALKLEE-FGLSGSDAEN-VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGM 175
           ++A G   L  ++  G S   A       +       L   ++  + G  VVI       
Sbjct: 101 VVAPGIE-LIYDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPF 159

Query: 176 ECA------ASL---------VINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK 220
            C       AS           ++K+ +          +  F+      Y    ++  ++
Sbjct: 160 RCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQS-QFSKGWERLYGFGTENAMIE 218

Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
           +  G   +   VD    +V      G+    D++ +    R         LT + G   V
Sbjct: 219 WHPGPDSAVVKVDGGEMMVETA--FGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPV 276

Query: 281 TGR-LQSSN-SSVYAVGDVA-AFPLKLLGETRRLEHVDSARKSAKHAVAAIME 330
             +  +SS    ++ +GD + A P+   G         SA    K A AA++ 
Sbjct: 277 DIKTFESSIHKGIHVIGDASIANPMPKSGY--------SANSQGKVAAAAVVV 321

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 55/246 (22%), Positives = 86/246 (34%), Gaps = 76/246 (30%)

Query: 91  GTRVKSADV----------RRKTLVTATGETISYKILIIATGARALKL-----EEFGLSG 135
           G +V+  +V               V         K +I+ATGA   KL     + F   G
Sbjct: 79  GAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKG 138

Query: 136 SDAENVCYLRDLADA----NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVT 189
                 C      D      + V           VVIGGG   +E    + + K    VT
Sbjct: 139 VSTCATC------DGFFYKGKKV-----------VVIGGGDAAVEEG--MFLTKFADEVT 179

Query: 190 MVFPEAH---------CMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 238
           ++    H             R F  PK+             KF+  T +   ++     V
Sbjct: 180 VI----HRRDTLRANKVAQARAFANPKM-------------KFIWDTAVE--EIQGADSV 220

Query: 239 VAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSSVY 292
             V LR+      + L TD V + IG  PNT+  +  ++L   G + V   + ++   ++
Sbjct: 221 SGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLF 280

Query: 293 AVGDVA 298
           A GDV+
Sbjct: 281 AAGDVS 286

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 61/239 (25%), Positives = 97/239 (40%), Gaps = 58/239 (24%)

Query: 85  GIELVLGTRVKSADV--RRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVC 142
           G +L +   V+S  +    K++VTA G+T   + +I+A GA A  L    + G       
Sbjct: 85  GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYL---QVPGEQELL-- 138

Query: 143 YLRDLADANRLVNVMKSCSG-----GNAVVIGGGYIGMECAASLVINKI--NVTMV---- 191
                    R V+   +C G      +  VIGGG   ME A    + +   +VT+V    
Sbjct: 139 --------GRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEA--TFLTRFARSVTLVHRRD 188

Query: 192 -FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN- 247
            F  +  M  R     KI             +F+    +    VD +  V  + +RD N 
Sbjct: 189 EFRASKIMLDRARNNDKI-------------RFLTNHTVV--AVDGDTTVTGLRVRDTNT 233

Query: 248 ----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVTGRLQSSNSS---VYAVGDVA 298
                LP   V V IG  P + L    + ++  G + V GR  ++++S   V+A GD+ 
Sbjct: 234 GAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGR--TTSTSLPGVFAAGDLV 290

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score = 59.1 bits (144), Expect = 8e-10
 Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 63/244 (25%)

Query: 85  GIELVLGTRVKSADV--RRKTLVTATGETISYKILIIATGARALKL-----EEFGLSGSD 137
           G++  +   V+          ++   G+T   K +IIATG    +       E+   G  
Sbjct: 73  GLKHEMTA-VQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVS 131

Query: 138 AENVCYLRDLADA----NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMV 191
               C      D     N+ V            V+GGG   +E A  + +  I   V ++
Sbjct: 132 TCATC------DGFFYKNKEV-----------AVLGGGDTAVEEA--IYLANICKKVYLI 172

Query: 192 -----FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVN 242
                F  A           KI             +F+   V+     D++G   +   N
Sbjct: 173 HRRDGFRCAPITLEHAKNNDKI-------------EFLTPYVVEEIKGDASGVSSLSIKN 219

Query: 243 LRDG--NRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGRLQSSNSSVYAV 294
                   L      + +G   N ++ + +         E G I V   ++++   ++A 
Sbjct: 220 TATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAA 279

Query: 295 GDVA 298
           GD+ 
Sbjct: 280 GDIR 283

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 45/243 (18%), Positives = 83/243 (34%), Gaps = 61/243 (25%)

Query: 85  GIELVLG--TRVKSADVRRKTLVTATGETISYKILIIATGARALKL-----EEFGLSGSD 137
           G++  +    ++        T+    G+T   K +I+ TG+   K      +EF   G  
Sbjct: 76  GLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGKGVS 135

Query: 138 AENVCYLRDLADA----NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMV 191
               C      D     N+ V            V+GGG   +E A  L +  I   + ++
Sbjct: 136 TCATC------DGFFYKNKEV-----------AVLGGGDTALEEA--LYLANICSKIYLI 176

Query: 192 -----FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNL 243
                F  A     ++    KI             + +    +     D  G   V V L
Sbjct: 177 HRRDEFRAAPSTVEKVKKNEKI-------------ELITSASVDEVYGDKMGVAGVKVKL 223

Query: 244 RDG--NRLPTDMVVVGIGIRPNTSLFEGQLTL------EKGGIKVTGRLQSSNSSVYAVG 295
           +DG    L    +   +G+     + +   +       E G + V  ++Q+S + ++A G
Sbjct: 224 KDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAG 283

Query: 296 DVA 298
           D+ 
Sbjct: 284 DLR 286

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 68/325 (20%)

Query: 9   IVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA-RLPSFHT 67
           ++G G A+   A    + G             +  +E+     G    E P  RLP    
Sbjct: 192 LLGAGPASISCASFLARLGY----------SDITIFEKQEYVGGLSTSEIPQFRLPY--D 239

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RAL 126
            V  N E    +   + G++++ G  +   ++   TL         YK   I  G     
Sbjct: 240 VV--NFEI---ELMKDLGVKIICGKSLSENEITLNTLKEE-----GYKAAFIGIGLPEPK 289

Query: 127 KLEEFGLSGSDAENVC----YLRDLADANRLVNVMKSCS----GGNAVVIGGGYIGMECA 178
             + F    +  +       +L  +A +++              G  +V+G G    +CA
Sbjct: 290 TDDIFQ-GLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCA 348

Query: 179 -ASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYYKSK--GVKFVKGTVLSSFDVD 233
            ++L      V +VF     +  A           EE   +K    +F+         + 
Sbjct: 349 TSALRCGARRVFLVFRKGFVNIRAVP---------EEVELAKEEKCEFLPFLSPRKV-IV 398

Query: 234 SNGKVVAVNLR------DGNR---------LPTDMVVVGIG-IRPNTSLFEGQLTLE--- 274
             G++VAV          G           L  D+V+   G +  +  + E    ++   
Sbjct: 399 KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNR 458

Query: 275 KGGIKVTGR-LQSSNSSVYAVGDVA 298
               +V    +Q+S   V+A GD+ 
Sbjct: 459 WDLPEVDPETMQTSEPWVFAGGDIV 483

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 51/237 (21%), Positives = 78/237 (32%), Gaps = 52/237 (21%)

Query: 91  GTRVKSADV------RRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYL 144
           GT + +  V       +   +    + I    +I+A GA A +L      GS      + 
Sbjct: 84  GTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRL---SFVGSGEVLGGF- 139

Query: 145 RDLADANRLVNVMKSCSGGNA-------VVIGGGYIGMECAASLVINKI--NVTMV---- 191
                 NR ++    C G           VIGGG   ME A  L   K    V ++    
Sbjct: 140 -----WNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFL--TKYGSKVYIIHRRD 192

Query: 192 -FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN- 247
            F  +  M  R    PKI   +        V    G             +  + +++   
Sbjct: 193 AFRASKIMQQRALSNPKIDVIWN-----SSVVEAYGD-------GERDVLGGLKVKNVVT 240

Query: 248 ----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQSSNSSVYAVGDVA 298
                L    +   IG  P T   +G + L+  G +    G  Q+S   V+A GDV 
Sbjct: 241 GDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQ 297

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 41/237 (17%), Positives = 65/237 (27%), Gaps = 63/237 (26%)

Query: 85  GIELVLGTRVKSADV--RRKTLVTATGETISYKILIIATGARALKLE---EFGLSGSDAE 139
            I  V G RV  A        +    G   +   LI+A G      E        GS   
Sbjct: 71  TIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSA-- 127

Query: 140 NVCYLRDLADANRLVNVMKSC--------SGGNAVVIGGGYIGMECAASLVINKINVTMV 191
            V +                C          G   VI    + +   A ++ +    T  
Sbjct: 128 -VFH----------------CPYCHGYELDQGKIGVIAASPMAIH-HALMLPDWGETTFF 169

Query: 192 F-----PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 246
                 P+A   A L              ++GV+     +     +  +  VV   L DG
Sbjct: 170 TNGIVEPDADQHALL-------------AARGVRVETTRIRE---IAGHADVV---LADG 210

Query: 247 NRLPTDMVVVGIGIRPNTSLFEG-----QLTLEKGGIKVTGRLQSSNSSVYAVGDVA 298
             +    +     +R      E      +       I      Q++   ++A GDVA
Sbjct: 211 RSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 63/255 (24%), Positives = 91/255 (35%), Gaps = 83/255 (32%)

Query: 85  GIELVLGTRVKSADVRRKT-LVTATGETISYKILIIATGARALKL----EE----FGLSG 135
             E++    +   D++ +   +       +   LIIATGA A  L    EE     G+S 
Sbjct: 76  ETEIIFDH-INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSA 134

Query: 136 SDAENVCYLRDLADANRLVNVMKSCSG-----GNAVVIGGGYIGMECAASLVINKI--NV 188
                 C       A        +  G         VIGGG   +E A  L ++ I   V
Sbjct: 135 ------C-------A--------TSDGFFYRNQKVAVIGGGNTAVEEA--LYLSNIASEV 171

Query: 189 TMVFPEAH--------------CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234
            ++    H               M ++    I  +       + ++ V G        D 
Sbjct: 172 HLI----HRRDGFRAEKILIKRLMDKVENGNIILHTN-----RTLEEVTG--------DQ 214

Query: 235 NGKVVAVNLRDGN------RLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSN 288
            G V  V LRD         L    + V IG  PNT++FEGQL LE G IKV   +  + 
Sbjct: 215 MG-VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNA 273

Query: 289 SS-----VYAVGDVA 298
           +      V+A GDV 
Sbjct: 274 TQTSIPGVFAAGDVM 288

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score = 49.9 bits (120), Expect = 9e-07
 Identities = 58/244 (23%), Positives = 90/244 (36%), Gaps = 62/244 (25%)

Query: 85  GIELVLGTRVKSADV-----RRKTLVTATGETISYKILIIATGARALKL-----EEFGLS 134
           G E++  T V   D+     +  T      E ++   +I+ATGA A ++     E +   
Sbjct: 98  GTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQK 156

Query: 135 GSDAENVCYLRDLADA---NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVT 189
           G  A  VC   D A     N+ +            VIGGG    E A  L   K    V 
Sbjct: 157 GISACAVC---DGAVPIFRNKPL-----------AVIGGGDSACEEAQFL--TKYGSKVF 200

Query: 190 MV-----FPEAHCMA-RLF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV-AV 241
           M+        +  M  R     KI             + +  TV    +   +GK++ A+
Sbjct: 201 MLVRKDHLRASTIMQKRAEKNEKI-------------EILYNTVAL--EAKGDGKLLNAL 245

Query: 242 NLRDGN-----RLPTDMVVVGIGIRPNTSLFEGQLTLEKGG-IKVT-GRLQSSNSSVYAV 294
            +++        LP   +   IG  P T +  GQ+  ++ G IK   G   +S    +A 
Sbjct: 246 RIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAA 305

Query: 295 GDVA 298
           GDV 
Sbjct: 306 GDVQ 309

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 47/233 (20%)

Query: 84  HGIELVLGTRVKSA--DVRRKTLVTATGETISYKILIIATGARALKLEEFG------LSG 135
           + + ++   RV+       R  +V   G     + +I ATG        +G        G
Sbjct: 89  YALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATG-------TWGEAYTPEYQG 141

Query: 136 SDAENVCYL--RDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF- 192
            ++     L     +            +G    +IGGG  G +  A +        +   
Sbjct: 142 LESFAGIQLHSAHYSTPAPF-------AGMRVAIIGGGNSGAQILAEVSTVAETTWITQH 194

Query: 193 PEAHCMARLFTPKIASYYEEYYKSK--------GVKFVKGTVLSS--FDVDSNGKVVA-- 240
             A     +    +     E +K++                V+     D  + G + A  
Sbjct: 195 EPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVP 254

Query: 241 ---------VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGR 283
                    +   DG     D V+   G RP  S  +G  L   +G ++V G 
Sbjct: 255 PPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGS 307

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 53/329 (16%), Positives = 100/329 (30%), Gaps = 60/329 (18%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVP-----------------PGELCIISEEPVAPYERPAL 49
             I+G G A    A+     G+                  P     I+  P        +
Sbjct: 7   VAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTIT--PSFTSNGFGM 64

Query: 50  SKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE----HGIELVLGTRVKSADVRRKT-- 103
                +    +   +F+    + E     ++       + + +   T V +  +      
Sbjct: 65  PDMNAISMDTSPAFTFNEEHISGETYA--EYLQVVANHYELNIFENTVVTN--ISADDAY 120

Query: 104 -LVTATGETISYKILIIATGA--RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC 160
             +  T ET     + +ATG      K  ++G+  S+ E+                    
Sbjct: 121 YTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFN--------------- 165

Query: 161 SGGNAVVIGGGYIGMECAASLVINKINVTMV-------FPEAHCMARLFTPKIASYYEEY 213
             G  VVIGG   G + A  L  N  ++ +         P+A    RL  P         
Sbjct: 166 -KGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLS-PYTRQRLGNV 223

Query: 214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPT-DMVVVGIGIRPNTSLFEGQLT 272
            K +G +       +  D+D N     ++   G  + T    ++  G     +    QL 
Sbjct: 224 IK-QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLF 282

Query: 273 LEK-GGIKVTGRLQSSNSS-VYAVGDVAA 299
           +     IK+T   +S+    ++ +G    
Sbjct: 283 VTTNQDIKLTTHDESTRYPNIFMIGATVE 311

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 50/269 (18%), Positives = 84/269 (31%), Gaps = 92/269 (34%)

Query: 85  GIELVLGTRVKSADVRRKTLVTATGETISYKIL-------IIATGA---RALKLEEFGLS 134
           G+       V              G   S   L       ++ATG    R +K       
Sbjct: 186 GVIYHPNFEV--------------GRDASLPELRRKHVAVLVATGVYKARDIKAP----- 226

Query: 135 GSDAENVCYLRD-LADANRLVNVMK---------SCSGGNAVVIGGGYIGMEC------- 177
           GS   N+    D L  +N++              + +G + VV+GGG   M+C       
Sbjct: 227 GSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQ 286

Query: 178 -AASLVINKINVTMVF--PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234
            A S       V  ++     +        ++A   EE     GV+F+       F  D 
Sbjct: 287 GATS-------VKCLYRRDRKNMPGSQR--EVAHAEEE-----GVEFIWQAAPEGFTGD- 331

Query: 235 NGKVVAVNL---------RDGNR-----------LPTDMVVVGIGIRPN--TSLFEGQLT 272
              V  V             G +           +  D+V+  +G  P    + F+ +  
Sbjct: 332 -TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD-EPE 389

Query: 273 LEK---GGIKV-TGRLQSSNSSVYAVGDV 297
           L+    G + V      ++   V+A GD+
Sbjct: 390 LKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.98
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.97
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.96
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.95
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.95
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.93
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.93
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.92
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.87
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.81
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.74
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.59
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.59
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.58
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.31
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.28
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.2
3dme_A	369	Conserved exported protein; structural genomics, P	99.11
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.08
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.03
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.02
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.95
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.94
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.87
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.86
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.85
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.82
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.82
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.8
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.79
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.77
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.76
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.75
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.74
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.73
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.73
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.73
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.71
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.69
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.68
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.68
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.67
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.67
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.67
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.66
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.65
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.64
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.64
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.64
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.64
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.64
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.63
3atr_A	453	Conserved archaeal protein; saturating double bond	98.62
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.61
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.61
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.59
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.58
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.57
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.56
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.55
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.54
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.52
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.5
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.5
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.49
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.49
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.48
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.48
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.47
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.46
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.46
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.45
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.45
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.45
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.45
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.44
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.44
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.43
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.42
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.42
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.41
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.4
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.39
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.38
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.38
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.37
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.37
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.37
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.36
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.36
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.35
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.35
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.35
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.34
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.33
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.33
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.33
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.33
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.33
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.31
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.31
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.31
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.31
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.3
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.3
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.3
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.3
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.3
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.29
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.29
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.29
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.28
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.28
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.28
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.28
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.27
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.27
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.27
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.26
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.26
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.26
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.25
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.25
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.23
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.22
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.21
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.21
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.21
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.21
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.2
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.19
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.19
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.18
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.18
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.18
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.17
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.16
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.16
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.15
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.15
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.14
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.14
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.14
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.13
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.12
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.12
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.12
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.12
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.11
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.1
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.1
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.1
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.1
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.09
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.09
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.08
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.08
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.08
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.08
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.07
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.07
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.05
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.04
3atr_A	453	Conserved archaeal protein; saturating double bond	98.04
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.03
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.01
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.0
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.99
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.98
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.97
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.96
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.96
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.95
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.95
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.95
4dna_A	463	Probable glutathione reductase; structural genomic	97.94
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.93
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.93
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.93
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.92
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.92
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.92
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.92
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.91
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.91
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.9
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.89
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.87
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.87
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.87
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.86
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.86
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.85
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.82
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.79
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.78
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.74
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.74
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.74
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.71
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.71
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.71
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.69
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.68
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.67
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.65
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.64
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.64
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.63
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.62
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.6
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.59
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.59
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.58
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.57
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.57
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.55
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.55
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.52
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.5
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.5
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.5
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.49
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.48
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.47
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.45
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.45
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.44
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.43
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.39
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.38
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.36
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.35
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.35
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.35
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.32
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.3
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.26
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.25
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.24
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.23
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.22
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.21
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.17
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.15
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.14
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.12
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.1
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.09
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.03
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.95
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.93
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.93
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.85
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.8
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.78
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.75
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.66
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.59
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.57
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.56
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.52
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.48
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.46
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.39
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	96.36
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	96.35
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.31
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.26
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.05
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.03
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.02
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.94
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	95.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.91
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	95.89
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.62
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	95.42
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.29
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.23
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	95.19
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	94.92
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.9
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.58
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.47
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.23
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.02
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.99
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.68
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.56
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.47
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.15
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.08
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.01
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.97
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.79
3dme_A	369	Conserved exported protein; structural genomics, P	92.75
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.58
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.56
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.48
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	92.47
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.46
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	92.35
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	92.09
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	91.99
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	91.96
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	91.95
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	91.92
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.9
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	91.86
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	91.75
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.73
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.55
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	91.54
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	91.34
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.28
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.28
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	91.19
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	91.13
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	90.95
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	90.93
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	90.89
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.84
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	90.72
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	90.72
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	90.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	90.66
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	90.37
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	90.34
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.33
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	90.29
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.26
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.22
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.21
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	90.18
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.14
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.09
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	90.08
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	90.04
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	90.02
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	89.84
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	89.79
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	89.65
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.63
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	89.48
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	89.45
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	89.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	89.4
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	89.37
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	89.32
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	89.3
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	89.2
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	89.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.0
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	88.92
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	88.26
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	88.18
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.05
4ezb_A	317	Uncharacterized conserved protein; structural geno	87.96
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	87.95
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.89
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	87.78
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	87.7
3tl2_A	315	Malate dehydrogenase; center for structural genomi	87.63
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	87.51
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	87.43
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	87.33
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	87.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	86.97
3c85_A	183	Putative glutathione-regulated potassium-efflux S	86.88
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	86.74
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	86.17
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	86.17
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	86.02
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	85.76
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	85.67
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	85.53
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	85.32
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	85.3
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.05
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	84.99
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	84.93
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	84.92
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.87
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	84.84
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	84.8
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	84.77
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	84.7
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	84.62
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	84.48
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.35
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	84.29
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	84.21
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.19
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	84.11
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	83.81
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	83.67
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	83.62
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	83.37
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.35
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	83.35

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=2e-57  Score=463.91  Aligned_cols=399  Identities=18%  Similarity=0.259  Sum_probs=326.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+||||||||||++||.+|+++|. ..+|+|||+++..+|.++++++.+..  ......       ........+++++.
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~--~~~~~~-------~~~~~~~~~~~~~~   70 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGE--VVEDRR-------YALAYTPEKFYDRK   70 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTT--SSCCGG-------GTBCCCHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcC--Cccchh-------hhhhcCHHHHHHhc
Confidence            379999999999999999999875 35699999999888888777542211  000000       00112335677889


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCC-----CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTAT-----GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS  159 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~-----g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~  159 (479)
                      +++++.+++|+.+|.+.+.+.+.+     +.++.||+||||||++|+.|++   ++   +++++++++.++..+...+..
T Consensus        71 ~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i---~g---~~~~~~~~~~~~~~l~~~~~~  144 (437)
T 4eqs_A           71 QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGF---ES---DITFTLRNLEDTDAIDQFIKA  144 (437)
T ss_dssp             CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCC---CC---TTEECCSSHHHHHHHHHHHHH
T ss_pred             CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccc---cC---ceEEeeccHHHHHHHHHhhhc
Confidence            999999999999999998877632     2468999999999999887665   54   568889999999888877766


Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      ..+++++|||+|++|+|+|..++++|.+||++++.+++++. +++++.+.+.+.++++||++++++++++++.  +    
T Consensus       145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~--~----  217 (437)
T 4eqs_A          145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAING--N----  217 (437)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEET--T----
T ss_pred             cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecC--C----
Confidence            57899999999999999999999999999999999999886 8999999999999999999999999999864  2    


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHH
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSA  317 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  317 (479)
                      .+.+++|+++++|.|++++|++||+++++. ++.. ++|+|.||+++|||+|||||+|||+..++..++.+...+++..|
T Consensus       218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A  297 (437)
T 4eqs_A          218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA  297 (437)
T ss_dssp             EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred             eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence            477899999999999999999999998764 5666 57889999999999999999999999998888888888999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE-------EE--ccCC------CCceEEEEc--cC
Q 011700          318 RKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV-------HY--GNFS------GTTFGAYWV--NK  380 (479)
Q Consensus       318 ~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-------~~--~~~~------~~~~~~~~~--~~  380 (479)
                      .+||+++|+||++.......++.+..+..+++++++++|+++.++.       .+  ....      ...|.++.+  ++
T Consensus       298 ~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~  377 (437)
T 4eqs_A          298 HRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSN  377 (437)
T ss_dssp             HHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEECCC
Confidence            9999999999998764333455666667789999999999876541       11  1111      133555544  68


Q ss_pred             CEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          381 GRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       381 ~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      ++|||+|++|++ ++|+ +.++.||+.++|++||.++.   +.|+|+|++.
T Consensus       378 ~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~yhP~~s~~  425 (437)
T 4eqs_A          378 RQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAFAPPYSHP  425 (437)
T ss_dssp             CBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC---CCCCTTTCCS
T ss_pred             CEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCc---cccCCCCCch
Confidence            999999999985 8887 66899999999999999886   6777877654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=7.8e-55  Score=442.85  Aligned_cols=396  Identities=30%  Similarity=0.469  Sum_probs=342.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +++||||||||+||++||.+|+++|++ .+|+|||+++..+|.++.+++.++......          ........+++.
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~-~~V~lie~~~~~~y~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~   76 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKTF----------ERICIRPAQFWE   76 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC-SCEEEEESSSSCCBCSGGGGTTTTTTSSCS----------GGGBSSCHHHHH
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcC-CCEEEEecCCCCCcCcccCCHHHHcCCCCH----------HHhccCCHHHHH
Confidence            357999999999999999999998864 579999999999999988887665432111          112245678889


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +.+++++.+++|..++++.+.+.+.+++++.||+||||||++|+.|++   +|.+.++++++++..++..+...+.. .+
T Consensus        77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i---~g~~~~~v~~~~~~~d~~~l~~~~~~-~~  152 (415)
T 3lxd_A           77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSC---VGADLAGVHAVRTKEDADRLMAELDA-GA  152 (415)
T ss_dssp             HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBT---TSSCCBTEECCCSHHHHHHHHHHHHT-TC
T ss_pred             HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCC---CCccccCEEEEcCHHHHHHHHHHhhh-cC
Confidence            999999999999999999999999999999999999999999998887   67677889999999999888776652 27


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  242 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~  242 (479)
                      ++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++++..+.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~  231 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVR  231 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEE
Confidence            8999999999999999999999999999999999998878999999999999999999999999999987 567777899


Q ss_pred             eCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeecccccccc-CceeecccHHHHHHH
Q 011700          243 LRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL-GETRRLEHVDSARKS  320 (479)
Q Consensus       243 ~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~-g~~~~~~~~~~A~~~  320 (479)
                      +.+|+++++|.|++|+|++|++++++. ++..++ +|.||+++||++|+|||+|||+..+.... |.+.+++++..|..|
T Consensus       232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q  310 (415)
T 3lxd_A          232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM  310 (415)
T ss_dssp             ESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred             eCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence            999999999999999999999987754 455554 59999999999999999999999987666 788888999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHH
Q 011700          321 AKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA  398 (479)
Q Consensus       321 g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~  398 (479)
                      |+.||+||++..  ..|..+|+||+.+|++.++++|...+  +.+..++.....|.++++++|+|+|+.++|. ..++..
T Consensus       311 g~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~  387 (415)
T 3lxd_A          311 ATAAAKDICGAP--VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNM-VKDYVQ  387 (415)
T ss_dssp             HHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEEESC-HHHHHH
T ss_pred             HHHHHHHhcCCC--CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEEECC-hHHHHH
Confidence            999999999875  57888999999999999999998653  5566677666789999999999999999995 566777


Q ss_pred             HHHHHHcCCCcCcHHHHhhcC
Q 011700          399 IAKATRLQPVVEDLAELETQG  419 (479)
Q Consensus       399 ~~~~i~~~~~~~dl~~~~~~~  419 (479)
                      +..+|+.+..++ ..+|.++.
T Consensus       388 ~~~~~~~~~~~~-~~~l~~~~  407 (415)
T 3lxd_A          388 GKKLVEARAQIA-PEQLADAG  407 (415)
T ss_dssp             HHHHHHHTCCCC-HHHHTCTT
T ss_pred             HHHHHHCCCCCC-HHHhcCCC
Confidence            788898888775 45555433

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=5.3e-55  Score=443.04  Aligned_cols=394  Identities=26%  Similarity=0.399  Sum_probs=336.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+  +||||||||+||++||.+|+++|+ ..+|+|||+++..+|.+|.+++.++......          ... ....++
T Consensus         1 M~--~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~----------~~~-~~~~~~   66 (410)
T 3ef6_A            1 MA--THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLER----------PPI-LAEADW   66 (410)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSS----------CCB-SSCTTH
T ss_pred             CC--CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCH----------HHh-cCCHHH
Confidence            65  599999999999999999999886 4679999999999999998887655332111          111 344677


Q ss_pred             HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      +.+.+++++.+++|..++++.+++.+.+++++.||+||||||++|+.|++   ||.+.++++++++..++..+...+.  
T Consensus        67 ~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i---pG~~~~~v~~~~~~~d~~~l~~~~~--  141 (410)
T 3ef6_A           67 YGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMAL---PGSQLPGVVTLRTYGDVQVLRDSWT--  141 (410)
T ss_dssp             HHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC---TTTTSTTEECCCSHHHHHHHHHHCC--
T ss_pred             HHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCC---CCccccceEEeccHHHHHHHHHHhc--
Confidence            88999999999999999999999999999999999999999999998877   7767788999999999988877654  


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++.  ++.+..
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~  219 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQ  219 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEE
Confidence            479999999999999999999999999999999999988778999999999999999999999999999986  335557


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHH
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARK  319 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~  319 (479)
                      +.+.||+++++|.|++|+|++|++++++. ++..+ ++|.||+++||++|+|||+|||+..+... |.+.+++++..|..
T Consensus       220 v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~  297 (410)
T 3ef6_A          220 VMASDGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQR  297 (410)
T ss_dssp             EEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHH
T ss_pred             EEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHH
Confidence            88999999999999999999999987754 45555 56999999999999999999999988765 66777889999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHH
Q 011700          320 SAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYE  397 (479)
Q Consensus       320 ~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~  397 (479)
                      ||+.||+||++..  ..|..+|++|+.+|++.++++|+..+  +.+..++..+..|.+++.++|+|+|++++|. ..+..
T Consensus       298 qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~  374 (410)
T 3ef6_A          298 QAAAVAAAILGKN--VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVAVDA-PRDFA  374 (410)
T ss_dssp             HHHHHHHHHTTCC--CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEEESC-HHHHH
T ss_pred             HHHHHHHHHcCCC--CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEECC-hHHHH
Confidence            9999999999875  57888999999999999999998653  5666777766778889999999999999996 56667


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCC
Q 011700          398 AIAKATRLQPVVEDLAELETQGLG  421 (479)
Q Consensus       398 ~~~~~i~~~~~~~dl~~~~~~~~~  421 (479)
                      .+..+|+.+..++ ..+|.++.+.
T Consensus       375 ~~~~~i~~~~~~~-~~~l~~~~~~  397 (410)
T 3ef6_A          375 LATRLVEARAAIE-PARLADLSNS  397 (410)
T ss_dssp             HHHHHHHHTCBCC-HHHHHCTTSC
T ss_pred             HHHHHHhCCCCCC-HHHhcCCCCC
Confidence            7778888888775 3566544443

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=5.9e-54  Score=434.77  Aligned_cols=392  Identities=31%  Similarity=0.469  Sum_probs=340.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      +||||||||+||++||.+|+++|++ .+|+|||+++..+|.++.+++.++......          ........+++.+.
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~-~~V~lie~~~~~~y~~~~l~~~~l~~~~~~----------~~~~~~~~~~~~~~   70 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP----------NSLMFRPEKFFQDQ   70 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-SCEEEECCSSSSSBCSGGGGTGGGGSCCCT----------TSSBSSCHHHHHHT
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcC-CCEEEEeCCCCCCCCCccCCHHHHCCCCCH----------HHccCCCHHHHHhC
Confidence            6899999999999999999999873 459999999999999999887766433211          11224567888999


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN  164 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  164 (479)
                      +++++. ++|..++++.+.+.+.+++++.||+||+|||++|+.|++   +|.+.++++++++..++..+...+..  +++
T Consensus        71 ~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i---~g~~~~~v~~~~~~~d~~~l~~~~~~--~~~  144 (404)
T 3fg2_P           71 AIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDV---PNASLPDVLYLRTLDESEVLRQRMPD--KKH  144 (404)
T ss_dssp             TEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCCS---TTTTSTTEECCSSHHHHHHHHHHGGG--CSE
T ss_pred             CCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCCC---CCCCCCcEEEECCHHHHHHHHHHhhc--CCe
Confidence            999999 799999999999999999999999999999999988877   67677889999999999888877653  799


Q ss_pred             EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700          165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  244 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~  244 (479)
                      ++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++++..+.+.
T Consensus       145 vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~~  223 (404)
T 3fg2_P          145 VVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS  223 (404)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEeC
Confidence            99999999999999999999999999999999998878999999999999999999999999999987 45677789999


Q ss_pred             CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700          245 DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  323 (479)
Q Consensus       245 ~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  323 (479)
                      +|+++++|.|++|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+...+|.+.+++++..|..||+.
T Consensus       224 dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~  302 (404)
T 3fg2_P          224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC  302 (404)
T ss_dssp             TSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred             CCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence            9999999999999999999987754 5655644 9999999999999999999999988777888888999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHH
Q 011700          324 AVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAK  401 (479)
Q Consensus       324 aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~  401 (479)
                      ||+||++..  ..|..+|+||+.+|++.++++|...+  +.+..++.....|.++++++|+|+|+.++|. ..++..+..
T Consensus       303 aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~  379 (404)
T 3fg2_P          303 VAARLTGDA--KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIESVNR-AADHVFGRK  379 (404)
T ss_dssp             HHHHTTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEESC-HHHHHHHHH
T ss_pred             HHHHhCCCC--CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEEeCC-HHHHHHHHH
Confidence            999999875  57888999999999999999998653  4566777766789999999999999999995 566777788


Q ss_pred             HHHcCCCcCcHHHHhhcC
Q 011700          402 ATRLQPVVEDLAELETQG  419 (479)
Q Consensus       402 ~i~~~~~~~dl~~~~~~~  419 (479)
                      +|+.+..++ ..+|.++.
T Consensus       380 ~~~~~~~~~-~~~l~~~~  396 (404)
T 3fg2_P          380 ILPLDKSVT-PEQAADLS  396 (404)
T ss_dssp             HTTTTCCCC-HHHHHCTT
T ss_pred             HHHcCCCCC-HHHhcCCC
Confidence            898888775 45555443

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=1.6e-53  Score=434.59  Aligned_cols=390  Identities=29%  Similarity=0.472  Sum_probs=323.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+.++||||||||+||++||..|+++|. ..+|+|||+++..+|.++.+++.++.....  .        ........++
T Consensus         1 M~~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~--~--------~~~~~~~~~~   69 (431)
T 1q1r_A            1 MNANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT--A--------ESLYLRTPDA   69 (431)
T ss_dssp             -CCSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC--S--------GGGBSSCHHH
T ss_pred             CCCCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCC--h--------HHhcccCHHH
Confidence            6567999999999999999999999886 345999999988889888877665532211  0        1112345678


Q ss_pred             HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCC---eEEecCHHHHHHHHHHH
Q 011700           81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN---VCYLRDLADANRLVNVM  157 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~---v~~~~~~~~~~~l~~~l  157 (479)
                      +++.+++++.+++|..++.+.+++.+.+++++.||+||+|||++|+.|++   +|.+.++   ++++++.+++..+.+.+
T Consensus        70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i---~G~~~~~~~~v~~~~~~~d~~~l~~~l  146 (431)
T 1q1r_A           70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPV---ASGAVGKANNFRYLRTLEDAECIRRQL  146 (431)
T ss_dssp             HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG---GTTHHHHSTTEEESSSHHHHHHHHHTC
T ss_pred             HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCC---CCcccCCCceEEEECCHHHHHHHHHHh
Confidence            88999999999999999999899999888899999999999999998887   5544344   88889998888776655


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CCC
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNG  236 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g  236 (479)
                      .  .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+.+++.+ +++
T Consensus       147 ~--~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~  224 (431)
T 1q1r_A          147 I--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQ  224 (431)
T ss_dssp             C--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTC
T ss_pred             h--cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCC
Confidence            3  4799999999999999999999999999999999999887789999999999999999999999999999862 345


Q ss_pred             cEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHH
Q 011700          237 KVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  315 (479)
Q Consensus       237 ~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  315 (479)
                      ++..+.+.+|+++++|.|++|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|||+..+.+.+|.+.+++++.
T Consensus       225 ~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~  303 (431)
T 1q1r_A          225 KVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVP  303 (431)
T ss_dssp             CEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHH
T ss_pred             cEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHH
Confidence            666788999999999999999999999987754 45555 4599999999999999999999998876667777778999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCH
Q 011700          316 SARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK  393 (479)
Q Consensus       316 ~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~  393 (479)
                      .|..||+.||+||++..  ..|..+|++|+.+++++++++|++++  +.+..++.....|.+++.++++|+|++++|+.+
T Consensus       304 ~A~~qg~~aa~~i~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~  381 (431)
T 1q1r_A          304 NALEQARKIAAILCGKV--PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNRPV  381 (431)
T ss_dssp             HHHHHHHHHHHHHTTCC--CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESCHH
T ss_pred             HHHHHHHHHHHHhcCCC--CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEEECChH
Confidence            99999999999999865  46778999999999999999998653  455566655566777888899999999999775


Q ss_pred             HHHHHHHHHHHcCCCcC
Q 011700          394 EEYEAIAKATRLQPVVE  410 (479)
Q Consensus       394 ~e~~~~~~~i~~~~~~~  410 (479)
                      .+. ....+|..+.++.
T Consensus       382 ~~~-~~~~~i~~~~~~~  397 (431)
T 1q1r_A          382 EFN-QSKQIITDRLPVE  397 (431)
T ss_dssp             HHH-HHHHHHHTTCCCC
T ss_pred             HHH-HHHHHHHCCCCCC
Confidence            544 3445555555543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=3.1e-54  Score=443.08  Aligned_cols=400  Identities=20%  Similarity=0.238  Sum_probs=311.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      +||||||||+||++||.+|++++ +..+|+|||+++...|..+.+.. ++.. .....        ........+++.+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~g~~~~~~~~-~~~~-~~~~~--------~~~~~~~~~~~~~~   71 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKY-PQAEISLIDKQATVGYLSGGLSA-YFNH-TINEL--------HEARYITEEELRRQ   71 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhhC-cCCcEEEEECCCCCcccCccchh-hhcC-CCCCH--------HHhhcCCHHHHHHC
Confidence            69999999999999999999972 12349999999876665433321 1100 00000        11113366788899


Q ss_pred             CcEEEeCceEEEEECCCcEEEeC---CCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700           85 GIELVLGTRVKSADVRRKTLVTA---TGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS  161 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~---~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~  161 (479)
                      +++++.+++|..++.+.+.+.+.   +++++.||+||||||++|..|++   +|.+.+++++++++.+...+.+...  .
T Consensus        72 gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~~--~  146 (452)
T 3oc4_A           72 KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQI---RGSQTEKLLKYKFLSGALAAVPLLE--N  146 (452)
T ss_dssp             TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCC---BTTTCTTEEEGGGCC----CCHHHH--T
T ss_pred             CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHh--c
Confidence            99999999999999999888763   55689999999999999998887   6666678898887777766555444  4


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      +++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.++++||++++++.|++++. +++.+ .+
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v  224 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VL  224 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EE
Confidence            79999999999999999999999999999999999998778999999999999999999999999999986 34555 67


Q ss_pred             EeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHH
Q 011700          242 NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS  320 (479)
Q Consensus       242 ~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~  320 (479)
                      .+.++ ++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+....+.+.+.+++..|..|
T Consensus       225 ~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~  303 (452)
T 3oc4_A          225 ETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRT  303 (452)
T ss_dssp             EESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHH
T ss_pred             EECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHH
Confidence            77777 89999999999999999987765555 57899999999999999999999999876666666666789999999


Q ss_pred             HHHHHHHHcCCCCCCCCC-CCCeEEEeecCcceEeecCCCceEE---------EEcc------CCCCceEEEEc--cCCE
Q 011700          321 AKHAVAAIMEPDKTDKFD-YLPFFYSRVFTLSWQFYGDNVGEVV---------HYGN------FSGTTFGAYWV--NKGR  382 (479)
Q Consensus       321 g~~aa~~i~~~~~~~~~~-~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~------~~~~~~~~~~~--~~~~  382 (479)
                      |+.||+||++...  .+. ..+...+.+|+.+++++|+++.++.         .+..      .....|.++.+  ++++
T Consensus       304 g~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~  381 (452)
T 3oc4_A          304 GLVVANNLEEKTH--RFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKVTQR  381 (452)
T ss_dssp             HHHHTTSSSSCCC--CCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETTTCB
T ss_pred             HHHHHHHhcCCCc--cCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECCCCE
Confidence            9999999998643  222 2334556778889999999876531         1110      01245666655  5799


Q ss_pred             EEEEEEeCC-CHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCcccc
Q 011700          383 LVGSFLEGG-TKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALA  425 (479)
Q Consensus       383 i~G~~~~g~-~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~  425 (479)
                      |||+|++|+ +++|+ +.++.||++++|++||.++ +..||++++.
T Consensus       382 ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~  427 (452)
T 3oc4_A          382 VLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI  427 (452)
T ss_dssp             EEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred             EEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence            999999999 78887 6689999999999999987 4445555443

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=5.6e-54  Score=443.64  Aligned_cols=411  Identities=21%  Similarity=0.288  Sum_probs=304.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCC-CCCCCCCcccccCCcccCCCHhHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPE-APARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ++||+|||||+||++||.+|++++ +..+|+|||+++..+|.++.++..+.... ....+..+.     .......+++.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~   76 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATP-----YNVVRDPEFFR   76 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccchhhcCCCCchHHhcccc-----chhccCHHHHh
Confidence            579999999999999999999982 12349999999987777654432111000 000000000     00112233343


Q ss_pred             -HcCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700           83 -EHGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV  156 (479)
Q Consensus        83 -~~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~  156 (479)
                       +.+++++.+++|..++.+.+.+.+.+   ++  ++.||+||||||++|..|++   +|.+.++++++++..++..+.+.
T Consensus        77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~  153 (472)
T 3iwa_A           77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPV---EGMDLAGVTPVTNLDEAEFVQHA  153 (472)
T ss_dssp             ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSC---TTTTSBTEEECCSHHHHHHHHHH
T ss_pred             hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCC---CCCCCCCEEEeCCHHHHHHHHHH
Confidence             57999999999999999999888754   54  78999999999999988877   67666789999999988888776


Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  235 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  235 (479)
                      +....+++++|||+|++|+|+|..|.+. |.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++. ++
T Consensus       154 l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~  232 (472)
T 3iwa_A          154 ISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-EN  232 (472)
T ss_dssp             CCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SS
T ss_pred             hhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cC
Confidence            6544589999999999999999999999 999999999999998568999999999999999999999999999987 45


Q ss_pred             CcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700          236 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH  313 (479)
Q Consensus       236 g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~  313 (479)
                      +.+. +.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+...+|.+...++
T Consensus       233 ~~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~  311 (472)
T 3iwa_A          233 GKVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPL  311 (472)
T ss_dssp             SBEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCC
T ss_pred             CeEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecch
Confidence            5553 77888999999999999999999987654 5666 5789999999999999999999999888776677666778


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEE
Q 011700          314 VDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAY  376 (479)
Q Consensus       314 ~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~  376 (479)
                      +..|..||+.||+||++... .....+|++++.+++.+++++|+++.++.         .+...        ....|.++
T Consensus       312 ~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl  390 (472)
T 3iwa_A          312 GSMANRQGRVIGTNLADGDA-TFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMTLQL  390 (472)
T ss_dssp             TTHHHHHHHHHHHHHTTCCC-CCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCc-cCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEEEEE
Confidence            88999999999999998653 23345778888899999999999875421         11111        11345665


Q ss_pred             Ec--cCCEEEEEEEeCC---CHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          377 WV--NKGRLVGSFLEGG---TKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       377 ~~--~~~~i~G~~~~g~---~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      .+  ++++|||+|++|+   .+.|+ +.++.||+.++|++||.+++   +.|+|+|++.
T Consensus       391 i~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~  446 (472)
T 3iwa_A          391 VVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAE---VVYSPPFASA  446 (472)
T ss_dssp             EEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCC---CC--------
T ss_pred             EEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhccc---ccCCCCCCCc
Confidence            55  6899999999999   34676 66899999999999999887   5566666543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=7e-54  Score=440.18  Aligned_cols=404  Identities=21%  Similarity=0.229  Sum_probs=316.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY-   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (479)
                      +++||||||||+||++||..|++++. ..+|+|||+++...|..+.++..+ ...  ...        ........+++ 
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~-~~~--~~~--------~~~~~~~~~~~~   69 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVV-EGL--STP--------DKLMYYPPEVFI   69 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHH
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcccc-CCC--CCH--------HHhhhcCHHHHH
Confidence            45899999999999999999999732 335999999986555432222111 000  000        00112223344 


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      ++.+++++.+++|..++.+.+.+.+.++ .++.||+||||||++|+.|++   +|.+.+++++.++..++..+.+.+...
T Consensus        70 ~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~~~~~~~~~  146 (449)
T 3kd9_A           70 KKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAI---EGVNLKGVFTADLPPDALAIREYMEKY  146 (449)
T ss_dssp             HHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSC---BTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred             HhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence            6889999999999999998888888777 489999999999999988876   676667888888888888888777655


Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.+++.+  +.+..
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~--~~v~~  223 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGE--ERVEK  223 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECS--SSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEecc--CcEEE
Confidence            689999999999999999999999999999999999998768999999999999999 999999999999863  23333


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR  318 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  318 (479)
                      + +.+++++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....|.+...+++..|.
T Consensus       224 v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~  302 (449)
T 3kd9_A          224 V-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN  302 (449)
T ss_dssp             E-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHH
T ss_pred             E-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHH
Confidence            3 457789999999999999999987754 5666 578899999999999999999999998776667766678899999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEc--c------CCCCceEEEEc--c
Q 011700          319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG--N------FSGTTFGAYWV--N  379 (479)
Q Consensus       319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~--~------~~~~~~~~~~~--~  379 (479)
                      .||+.+++||++... ......|+.++.+++.+++++|+++.++.         .+.  +      .....|.++.+  +
T Consensus       303 ~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~  381 (449)
T 3kd9_A          303 KMGYVAGSNIAGKEL-HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVDNE  381 (449)
T ss_dssp             HHHHHHHHHHTTCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEETT
T ss_pred             HHHHHHHHHhcCCCc-cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEECC
Confidence            999999999998653 22234577788999999999999875431         110  0      01134666655  5


Q ss_pred             CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          380 KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       380 ~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      +++|||+|++|++++|+ +.++.||+.++|++||.++.   +.|+|+|++.
T Consensus       382 ~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~p~~~~~  429 (449)
T 3kd9_A          382 TNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTD---LAYAPPFAPV  429 (449)
T ss_dssp             TCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCC---CCCBTTTBCS
T ss_pred             CCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCCc
Confidence            69999999999999998 56899999999999998875   5777777654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=7e-54  Score=430.20  Aligned_cols=362  Identities=21%  Similarity=0.317  Sum_probs=307.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+|||||||+||++||.+|.+.+.   +|+|||+++..+|.++.+++.+......           ........+++++
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~---~itlie~~~~~~y~~~~l~~~l~g~~~~-----------~~l~~~~~~~~~~   74 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCD---DITMINSEKYLPYYRPRLNEIIAKNKSI-----------DDILIKKNDWYEK   74 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCS---CEEEECSSSSCCBCGGGHHHHHHSCCCG-----------GGTBSSCHHHHHH
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCC---EEEEEECCCCCCcccChhhHHHcCCCCH-----------HHccCCCHHHHHH
Confidence            5789999999999999999954444   4999999999999998887643221111           1122567888999


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGG  163 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  163 (479)
                      ++++++.+++|+++|++++++.+.+|+++.||+||||||++|+.|++   +|.+  +++++++++++..+...+..  ++
T Consensus        75 ~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i---~G~~--~v~~~~~~~d~~~l~~~l~~--~~  147 (385)
T 3klj_A           75 NNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKV---PHAD--EIFSLYSYDDALKIKDECKN--KG  147 (385)
T ss_dssp             TTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCC---TTCS--CEECCSSHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCC---CCCC--CeEEeCCHHHHHHHHHHhhc--CC
Confidence            99999999999999999999999999999999999999999998887   6655  78999999999988877753  78


Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  243 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~  243 (479)
                      +++|||+|++|+|+|..|++.|.+||++++.++++++.+++++.+.+.+.++++||++++++.++++             
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------  214 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------  214 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------
Confidence            9999999999999999999999999999999999998789999999999999999999999887655             


Q ss_pred             CCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHH
Q 011700          244 RDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAK  322 (479)
Q Consensus       244 ~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  322 (479)
                        |+++++|.|++++|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+...      ..++..|..||+
T Consensus       215 --g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~  285 (385)
T 3klj_A          215 --GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQGE  285 (385)
T ss_dssp             --HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHHHH
T ss_pred             --CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHHHH
Confidence              567899999999999999988765 455554 5999999999999999999999876432      257889999999


Q ss_pred             HHHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCce---EEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHH
Q 011700          323 HAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEA  398 (479)
Q Consensus       323 ~aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~  398 (479)
                      .||+||++..  ..|.. +|++|+.+++++++++|+++++   .+.. +.....|.++++++|+|+|++++|+.+.+ ..
T Consensus       286 ~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~g~~~~g~~~~~-~~  361 (385)
T 3klj_A          286 VAGLNACGED--ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-STQEDKYIVCMLKENKIDAAAVIGDVSLG-TK  361 (385)
T ss_dssp             HHHHHHTTCC--CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EECSSCEEEEEEETTEEEEEEEESCHHHH-HH
T ss_pred             HHHHHhcCCC--cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-ECCCCeEEEEEEECCEEEEEEEECCcHHH-HH
Confidence            9999999865  35554 6999999999999999987643   2333 44456799999999999999999976554 46


Q ss_pred             HHHHHHcCCCcCcH
Q 011700          399 IAKATRLQPVVEDL  412 (479)
Q Consensus       399 ~~~~i~~~~~~~dl  412 (479)
                      +..+|+++.+++++
T Consensus       362 ~~~~i~~~~~~~~~  375 (385)
T 3klj_A          362 LKKAIDSSKSFDNI  375 (385)
T ss_dssp             HHHHHHTTCBCSCC
T ss_pred             HHHHHHcCCCcccc
Confidence            78899999999987

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=9.6e-56  Score=459.24  Aligned_cols=416  Identities=18%  Similarity=0.205  Sum_probs=273.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC------CCCCccccc------ccCCCCC-----CCCCCcc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP------YERPALSKG------YLLPEAP-----ARLPSFH   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~------~~~~~l~~~------~~~~~~~-----~~~~~~~   66 (479)
                      +||+||||+||||+.||.+++++|.+   |+|||+.+...      +...|+..+      ++.....     .....+.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G  118 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG  118 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence            48999999999999999999999988   99999765321      222222111      1110000     0000010


Q ss_pred             cccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC----CCcEEEeceEEeecCCCc
Q 011700           67 TCVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA----TGETISYKILIIATGARA  125 (479)
Q Consensus        67 ~~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~----~g~~~~~d~lviAtG~~~  125 (479)
                      .....                 .........+++.+|+++.+. ..-+++..-.+...    +++++++|++|||||++|
T Consensus       119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~-a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P  197 (542)
T 4b1b_A          119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGL-AKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP  197 (542)
T ss_dssp             EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEE-EEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred             cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence            00000                 000112234567899999884 34344433233222    336799999999999999


Q ss_pred             ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700          126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  205 (479)
                      ..|+.+   +.+.+.+++.+++.+       +++ .|++++|||+|++|+|+|..|+++|.+||++.+ +++++. +|++
T Consensus       198 ~~P~~~---~~~~~~~~ts~~~l~-------l~~-lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D~e  264 (542)
T 4b1b_A          198 HIPDDV---EGAKELSITSDDIFS-------LKK-DPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FDQQ  264 (542)
T ss_dssp             CCCSSS---BTHHHHCBCHHHHTT-------CSS-CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SCHH
T ss_pred             CCCCcc---cCCCccccCchhhhc-------ccc-CCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cchh
Confidence            988652   222222332222211       122 589999999999999999999999999999987 467775 8999


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc---cccc-ccCc-EEE
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG---QLTL-EKGG-IKV  280 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~---~~~~-~~g~-i~V  280 (479)
                      +++.+.+.|+++||++++++.+.+++.. ++. ..+.+.+++++++|.|++|+|++||++.+..   ++.. .+++ |.|
T Consensus       265 i~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~v  342 (542)
T 4b1b_A          265 CAVKVKLYMEEQGVMFKNGILPKKLTKM-DDK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIA  342 (542)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECC
T ss_pred             HHHHHHHHHHhhcceeecceEEEEEEec-CCe-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEec
Confidence            9999999999999999999999999873 333 3578889889999999999999999986543   4554 3344 688


Q ss_pred             cCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCC
Q 011700          281 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNV  359 (479)
Q Consensus       281 d~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~  359 (479)
                      |+++|||+|+|||+|||++...         .+.+.|..||+++++|+++.... .+|..+|+  ..+++.+++.+|+++
T Consensus       343 d~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~--~vft~PeiA~VGlTE  411 (542)
T 4b1b_A          343 DHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKDSDEIMDYSYIPT--SIYTPIEYGACGYSE  411 (542)
T ss_dssp             CTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCE--EECSSSCEEEEECCH
T ss_pred             cccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcCCCcccCCCCCce--EEeCCCCeEEEeCCH
Confidence            9999999999999999996521         34677899999999999986543 57778886  556788899999987


Q ss_pred             ceEEEEc----------c-------------------------CCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHH
Q 011700          360 GEVVHYG----------N-------------------------FSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIA  400 (479)
Q Consensus       360 ~~~~~~~----------~-------------------------~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~  400 (479)
                      .++...+          .                         .....|.++..   ++++|||+|++|++|+|+ +.++
T Consensus       412 ~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~a  491 (542)
T 4b1b_A          412 EKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMA  491 (542)
T ss_dssp             HHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHH
T ss_pred             HHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHH
Confidence            6542110          0                         00123555442   579999999999999998 5589


Q ss_pred             HHHHcCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCcccccccCCC
Q 011700          401 KATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVLGKS  449 (479)
Q Consensus       401 ~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (479)
                      .||+.++|++||.+++..||+++|.+.++..+.+||.+....+||+++|
T Consensus       492 lAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~~g~~~~~~~~c~g~~  540 (542)
T 4b1b_A          492 LALRLKVKKKDFDNCIGIHPTDAESFMNLFVTISSGLSYAAKGGCGGGK  540 (542)
T ss_dssp             HHHHTCCBHHHHHHC----------------------------------
T ss_pred             HHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHHcCCCHHHccCCCCCc
Confidence            9999999999999999999999999999999999999999888887765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=3.4e-52  Score=422.02  Aligned_cols=384  Identities=27%  Similarity=0.433  Sum_probs=317.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||+|||||+||++||.+|+++|. ..+|+|||+++..+|.++.+++.++.......             .... ++++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~   71 (408)
T 2gqw_A            7 KAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK-------------IRLD-CKRA   71 (408)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGG-------------SBCC-CTTS
T ss_pred             CCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhh-------------hhHH-HHHH
Confidence            5899999999999999999999886 34599999999888888777655442211000             0111 4567


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGG  163 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  163 (479)
                      .+++++.+++|..++.+.+++.+.+++++.||+||||||++|+.|++  ++|.+ ++++++++.+++..+.+.+.  .++
T Consensus        72 ~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i--~~G~~-~~v~~~~~~~~~~~l~~~~~--~~~  146 (408)
T 2gqw_A           72 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPT--LQGAT-MPVHTLRTLEDARRIQAGLR--PQS  146 (408)
T ss_dssp             CSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGG--GTTCS-SCEEECCSHHHHHHHHTTCC--TTC
T ss_pred             CCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCc--cCCCC-CcEEEECCHHHHHHHHHHhh--cCC
Confidence            89999999889999999999999888899999999999999988875  04444 67888999988887765443  379


Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  243 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~  243 (479)
                      +++|||+|++|+|+|..|.+.|.+||++++.++++++.+++++.+.+.+.++++||++++++++++++   ++   .+.+
T Consensus       147 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v~~  220 (408)
T 2gqw_A          147 RLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV---DG---VVLL  220 (408)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE---TT---EEEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EEEE
Confidence            99999999999999999999999999999999999877899999999999999999999999999997   23   5778


Q ss_pred             CCCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHH
Q 011700          244 RDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAK  322 (479)
Q Consensus       244 ~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  322 (479)
                      .+|+++++|.|++|+|++|++++++. ++..++ +|.||+++||++|+|||+|||+..+...+|.+.+++++..|..||+
T Consensus       221 ~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~  299 (408)
T 2gqw_A          221 DDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGI  299 (408)
T ss_dssp             TTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHH
T ss_pred             CCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHH
Confidence            89999999999999999999987754 455554 4999999999999999999999987665676666788999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecC-CCceEEEEccCC--CCceEEEEccCCEEEEEEEeCCCHHHHHHH
Q 011700          323 HAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD-NVGEVVHYGNFS--GTTFGAYWVNKGRLVGSFLEGGTKEEYEAI  399 (479)
Q Consensus       323 ~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~-~~~~~~~~~~~~--~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~  399 (479)
                      .||.||.+... ..|..+|++|+.+++++++++|+ ...+.+..++..  ...|.+++.++++|+|++++|+.+ ++..+
T Consensus       300 ~aa~~i~g~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~g~~~-~~~~~  377 (408)
T 2gqw_A          300 AVARHLVDPTA-PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNAR-DFAPL  377 (408)
T ss_dssp             HHHHHHHCTTS-CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEEESCHH-HHHHH
T ss_pred             HHHHHhcCCCC-CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEEECChH-HHHHH
Confidence            99999998653 26788999999999999999998 223455555554  456888888899999999999754 56778


Q ss_pred             HHHHHcCCCcCcHHHHhh
Q 011700          400 AKATRLQPVVEDLAELET  417 (479)
Q Consensus       400 ~~~i~~~~~~~dl~~~~~  417 (479)
                      ..+|+.+.++.. .++..
T Consensus       378 ~~~i~~~~~~~~-~~l~~  394 (408)
T 2gqw_A          378 RRLLAVGAKPDR-AALAD  394 (408)
T ss_dssp             HHHHHTTCCCCH-HHHHC
T ss_pred             HHHHHCCCCCCh-HHhcC
Confidence            899999998764 34543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=2.8e-53  Score=436.04  Aligned_cols=403  Identities=18%  Similarity=0.282  Sum_probs=319.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +||||||||+||++||..|+++  |.+   |+|||+++..+|..+.+.. ++... .... .     .........++++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~-----~~~~~~~~~~~~~   69 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-D-----PRGLFYSSPEELS   69 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-C-----GGGGBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-C-----HHHhhhcCHHHHH
Confidence            5899999999999999999998  554   9999999865554322211 11100 0000 0     0111234567788


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCC-----CcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTAT-----GETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~-----g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      +.+++++.++++..++.+.+++.+.+     +++++||+||||||++|+.|++   +|.+.+++++++++.+...+.+..
T Consensus        70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~  146 (452)
T 2cdu_A           70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPI---PGIDSSRVYLCKNYNDAKKLFEEA  146 (452)
T ss_dssp             HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTTTSTTEEECSSHHHHHHHHHHG
T ss_pred             HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCC---CCCCCCCEEEeCcHHHHHHHHHHh
Confidence            89999999988999998888887753     4679999999999999998876   666667899999999988887766


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      .  .+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.++++||+++++++|++++. ++++
T Consensus       147 ~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~  223 (452)
T 2cdu_A          147 P--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDE  223 (452)
T ss_dssp             G--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTE
T ss_pred             c--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCe
Confidence            4  489999999999999999999999999999999999998668999999999999999999999999999986 3555


Q ss_pred             EEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700          238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  316 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  316 (479)
                      +..+.+ +|+++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+....|.+.+++++..
T Consensus       224 v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  302 (452)
T 2cdu_A          224 IITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN  302 (452)
T ss_dssp             EEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred             EEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence            554555 78899999999999999999987655555 5788999999999999999999999987666666666688999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEEEc-
Q 011700          317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAYWV-  378 (479)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~~~-  378 (479)
                      |..||+.||+||++... ....+.|++++.+|+++++.+|+++.++.         .+.+.        ....|.++.. 
T Consensus       303 A~~~g~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  381 (452)
T 2cdu_A          303 AVRQGRLVGLNLTEDKV-KDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSLVYD  381 (452)
T ss_dssp             HHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEEEEC
T ss_pred             HHHHHHHHHHHhCCCCC-cCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEEEEE
Confidence            99999999999997542 22334677788999999999998865331         11110        1124555554 


Q ss_pred             -cCCEEEEEEEeCC-CHHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700          379 -NKGRLVGSFLEGG-TKEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV  426 (479)
Q Consensus       379 -~~~~i~G~~~~g~-~~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~  426 (479)
                       ++++|+|+|++|+ ++.|+ +.++.+|++++|++|+..+ +..||++++.+
T Consensus       382 ~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  433 (452)
T 2cdu_A          382 PKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPF  433 (452)
T ss_dssp             TTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSS
T ss_pred             CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchH
Confidence             4799999999999 78887 6689999999999999886 66666666554

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=1.1e-52  Score=443.87  Aligned_cols=403  Identities=24%  Similarity=0.348  Sum_probs=322.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-H
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN-E   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (479)
                      +||+|||||+||++||.+|++++. ..+|+|||+++..+|.++.++..+ .....   +      .........+++. +
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~-~~~~~---~------~~~~~~~~~~~~~~~   70 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHI-SGEIA---Q------RSALVLQTPESFKAR   70 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHH-TSSSC---C------GGGGBCCCHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHh-cCCcC---C------hHHhhccCHHHHHHh
Confidence            699999999999999999999842 345999999998777654443211 11000   0      0111123344444 5


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      .+++++.+++|+.++.+.+.+.+.+   +.  ++.||+||||||++|+.|++   ||.+..++++++++.++..+.+.+.
T Consensus        71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---pG~~~~~v~~~~~~~~~~~l~~~~~  147 (565)
T 3ntd_A           71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPI---PGVDNPLTHSLRNIPDMDRILQTIQ  147 (565)
T ss_dssp             HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCC---CCCCCCCEEEeCCHHHHHHHHHHHh
Confidence            8999999999999999999887753   43  78999999999999988877   7777778999999998888877766


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc-----
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD-----  233 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-----  233 (479)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+.+++.+     
T Consensus       148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~  226 (565)
T 3ntd_A          148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV  226 (565)
T ss_dssp             HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence            667899999999999999999999999999999999999984 89999999999999999999999999999863     


Q ss_pred             -------------CCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeec
Q 011700          234 -------------SNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVA  298 (479)
Q Consensus       234 -------------~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~  298 (479)
                                   +++.+ .+.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          227 ASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred             cccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence                         23443 467788999999999999999999987654 5666 5789999999999999999999999


Q ss_pred             cccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCceE---------EEEccC
Q 011700          299 AFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV---------VHYGNF  368 (479)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~  368 (479)
                      ..+...+|.+...+++..|..||+.||+||++...  .|.. .|+.++.+|+.+++++|+++.++         ..+...
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~  383 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGREE--RYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYVHTA  383 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCC--CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEE
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhcCCCc--cCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEEecC
Confidence            88877677776778899999999999999998653  3444 45566788999999999987652         111110


Q ss_pred             --------CCCceEEEEc--cCCEEEEEEEeCCCH-HHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          369 --------SGTTFGAYWV--NKGRLVGSFLEGGTK-EEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       369 --------~~~~~~~~~~--~~~~i~G~~~~g~~~-~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                              ....|.++.+  ++++|||+|++|+++ +|+ +.++.||+.++|++||.++.   +.|+|+|.+
T Consensus       384 ~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~---~~~~P~~~~  452 (565)
T 3ntd_A          384 SHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLE---LSYAPPYGS  452 (565)
T ss_dssp             SSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCC---CCCCTTTCC
T ss_pred             cccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhh---hccCcccCc
Confidence                    1134566655  689999999999998 776 66899999999999998876   556666653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=6.8e-52  Score=439.37  Aligned_cols=403  Identities=23%  Similarity=0.323  Sum_probs=322.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||||||||+||++||.+|++++ +..+|+|||+++..+|..+.++..+. .. ..  +.     ..........+.++
T Consensus        36 ~~~VvIIGgG~AGl~aA~~L~~~~-~g~~V~vie~~~~~~~~~~~lp~~~~-g~-~~--~~-----~~~~~~~~~~~~~~  105 (588)
T 3ics_A           36 SRKIVVVGGVAGGASVAARLRRLS-EEDEIIMVERGEYISFANCGLPYYIG-GV-IT--ER-----QKLLVQTVERMSKR  105 (588)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC-SSSEEEEECSSSCSSBCGGGHHHHHT-TS-SC--CG-----GGGBSSCHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEECCCCccccCCCCchhhc-Cc-CC--Ch-----HHhhccCHHHHHHh
Confidence            479999999999999999999983 12349999999887776544432111 00 00  00     00011233445568


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeC---CCc--EEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHHHH
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTA---TGE--TISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~---~g~--~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      .+++++.+++|+.++.+.+.+.+.   +++  ++.||+||||||++|+.|++   +|. +.+++++.+++.+...+...+
T Consensus       106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~~v~~~~~~~~~~~~~~~l  182 (588)
T 3ics_A          106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSI---PGIEEAKALFTLRNVPDTDRIKAYI  182 (588)
T ss_dssp             TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---TTTTTCTTEEECSSHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCC---CCcccCCCeEEeCCHHHHHHHHHHH
Confidence            899999999999999999988774   455  78999999999999998877   666 567899999999988887777


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ....+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|++++.+ ++ 
T Consensus       183 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~-  259 (588)
T 3ics_A          183 DEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA-  259 (588)
T ss_dssp             HHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT-
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC-
Confidence            6556899999999999999999999999999999999999987 89999999999999999999999999999863 22 


Q ss_pred             EEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHH
Q 011700          238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD  315 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  315 (479)
                        .+.+.+|+++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+...+|.+...+++.
T Consensus       260 --~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~  337 (588)
T 3ics_A          260 --VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAW  337 (588)
T ss_dssp             --EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHH
T ss_pred             --EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccHH
Confidence              467889999999999999999999987654 5666 678999999999999999999999988776667766678899


Q ss_pred             HHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEc--cC------CCCceEEEE
Q 011700          316 SARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG--NF------SGTTFGAYW  377 (479)
Q Consensus       316 ~A~~~g~~aa~~i~~-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~--~~------~~~~~~~~~  377 (479)
                      .|..||+.||+||++ ... .....+|..+..+++.+++++|+++.++.         .+.  +.      ....|.++.
T Consensus       338 ~A~~~g~~aa~~i~g~~~~-~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~i  416 (588)
T 3ics_A          338 PANRQGRMLADIIHGHTDS-LYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVLIKLI  416 (588)
T ss_dssp             HHHHHHHHHHHHHTTCCSS-CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcc-ccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEEEEEE
Confidence            999999999999998 432 33345677777889999999999875431         111  10      013466665


Q ss_pred             c--cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          378 V--NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       378 ~--~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      +  ++++|||+|++|++ ++|+ +.++.||+.++|++||.++.   +.|+|+|++
T Consensus       417 ~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~  468 (588)
T 3ics_A          417 FNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLE---LSYAPPYSS  468 (588)
T ss_dssp             ECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCC---CCCSTTTCC
T ss_pred             EECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhh---hccCCCccc
Confidence            5  68999999999975 7776 66999999999999999987   567676654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=9.2e-52  Score=424.19  Aligned_cols=402  Identities=22%  Similarity=0.275  Sum_probs=315.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +||||||||+||++||..|+++  |.+   |+|||+++...|..+.+.. ++...    .+..     ........++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~~~~~~~~~~~   67 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK----VKDV-----NSVRYMTGEKME   67 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS----SCCG-----GGSBSCCHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc----cCCH-----HHhhcCCHHHHH
Confidence            4899999999999999999997  554   9999999865553322211 11100    0000     111234567788


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      +.+++++.++++..++.+.+++.+.+   |+  +++||+||||||++|..|++   ||.+.+++++++++.++..+.+.+
T Consensus        68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~~  144 (447)
T 1nhp_A           68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI---PGKDLDNIYLMRGRQWAIKLKQKT  144 (447)
T ss_dssp             HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCS---TTTTSBSEECCCHHHHHHHHHHHH
T ss_pred             HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCC---CCCCCCCeEEECCHHHHHHHHHHh
Confidence            89999999999999999988887753   54  48999999999999988876   666667788888888888887776


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ....+++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.+++++.+  +.
T Consensus       145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~  222 (447)
T 1nhp_A          145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD--GR  222 (447)
T ss_dssp             TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECS--SB
T ss_pred             hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEcc--Cc
Confidence            5435899999999999999999999999999999999998886689999999999999999999999999999862  44


Q ss_pred             EEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700          238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  316 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  316 (479)
                      +..+.+ +++++++|.|++|+|++|++.+++..+.. ++|+|.||+++||+.|+|||+|||+..+....|.+..+.++..
T Consensus       223 v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  301 (447)
T 1nhp_A          223 VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN  301 (447)
T ss_dssp             CCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred             EEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence            434555 56789999999999999999877655555 5688999999999999999999999876655565556678999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE---------EEccC--------CCCceEEEEc-
Q 011700          317 ARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYGNF--------SGTTFGAYWV-  378 (479)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~~~--------~~~~~~~~~~-  378 (479)
                      |..||+.|++||++... ......|+.++.+++++++.+|+++.++.         .+.+.        ....|.++.. 
T Consensus       302 A~~qg~~aa~~i~g~~~-~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  380 (447)
T 1nhp_A          302 ARKQGRFAVKNLEEPVK-PFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYD  380 (447)
T ss_dssp             HHHHHHHHHHTSSSCCC-CCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEEC
T ss_pred             HHHHHHHHHHhhcCCCC-CCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEEEEEE
Confidence            99999999999997542 12234577788999999999998764321         11111        1123555554 


Q ss_pred             -cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700          379 -NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV  426 (479)
Q Consensus       379 -~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~  426 (479)
                       ++++|+|+|++|++ +.|+ +.++.+|+.++|++|+.++ ...||++++.+
T Consensus       381 ~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  432 (447)
T 1nhp_A          381 PETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPW  432 (447)
T ss_dssp             TTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSS
T ss_pred             CCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcc
Confidence             47999999999998 8886 6689999999999999886 55666666554

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=3.1e-50  Score=416.18  Aligned_cols=402  Identities=22%  Similarity=0.327  Sum_probs=313.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-H
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN-E   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (479)
                      +||||||||+||++||..|++++. ..+|+|||+++...|..+.++. ++...    .+..     ........+++. .
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~----~~~~-----~~l~~~~~~~~~~~  105 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGA----IAST-----EKLIARNVKTFRDK  105 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTS----SSCG-----GGGBSSCHHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCC----cCCH-----HHhhhcCHHHHHhh
Confidence            699999999999999999998621 2349999999876665443321 11100    0000     111233455564 4


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCC---Cc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTAT---GE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~---g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      .+++++.+++|..++.+.+.+.+.+   |+  ++.||+||||||++|+.|++   +|.+.++++++++..++.++.+.+.
T Consensus       106 ~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~~~~v~~~~~~~~~~~l~~~~~  182 (480)
T 3cgb_A          106 YGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEW---EGRDLQGVHLLKTIPDAERILKTLE  182 (480)
T ss_dssp             TCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCC---BTTTSBTEECCSSHHHHHHHHHHHH
T ss_pred             cCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCC---CCccCCCEEEeCCHHHHHHHHHHhh
Confidence            5999999989999999888887753   65  79999999999999988876   6666577888899998888877776


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++.  ++.+
T Consensus       183 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~v  259 (480)
T 3cgb_A          183 TNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHIEILTNENVKAFKG--NERV  259 (480)
T ss_dssp             SSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE--SSBE
T ss_pred             hcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--CCcE
Confidence            446899999999999999999999999999999999998885 8999999999999999999999999999986  3455


Q ss_pred             EEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHH
Q 011700          239 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS  316 (479)
Q Consensus       239 ~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  316 (479)
                      ..+.+. +.++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....|.+.+++++..
T Consensus       260 ~~v~~~-~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~  338 (480)
T 3cgb_A          260 EAVETD-KGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTT  338 (480)
T ss_dssp             EEEEET-TEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHH
T ss_pred             EEEEEC-CCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHH
Confidence            456554 458999999999999999987654 4665 5789999999999999999999999877655566555678999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCC-CCCCeEEEeecCcceEeecCCCceE---------EEEccC--------CCCceEEEEc
Q 011700          317 ARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEV---------VHYGNF--------SGTTFGAYWV  378 (479)
Q Consensus       317 A~~~g~~aa~~i~~~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~---------~~~~~~--------~~~~~~~~~~  378 (479)
                      |..||+.||+||++..  ..+ ++.++.++.+++++++++|+++.++         ..+...        ....|.++++
T Consensus       339 A~~qg~~aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kl~~  416 (480)
T 3cgb_A          339 ANKQGRLAGLNMLDKR--RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPLYLKLLY  416 (480)
T ss_dssp             HHHHHHHHHHHHTTCC--CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCC--ccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceEEEEEEE
Confidence            9999999999999754  233 2344567889999999999876432         111111        1123555555


Q ss_pred             --cCCEEEEEEEeCCC-HHHH-HHHHHHHHcCCCcCcHHHH-hhcCCCccccc
Q 011700          379 --NKGRLVGSFLEGGT-KEEY-EAIAKATRLQPVVEDLAEL-ETQGLGFALAV  426 (479)
Q Consensus       379 --~~~~i~G~~~~g~~-~~e~-~~~~~~i~~~~~~~dl~~~-~~~~~~~a~~~  426 (479)
                        ++++|+|+|++|+. +.|+ +.++.||+.++|++||.++ ...||++++.+
T Consensus       417 ~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~  469 (480)
T 3cgb_A          417 RSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVW  469 (480)
T ss_dssp             ETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSS
T ss_pred             ECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCch
Confidence              58999999999998 8887 6689999999999999886 34556655443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=4.7e-52  Score=433.27  Aligned_cols=416  Identities=17%  Similarity=0.193  Sum_probs=303.5

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC------CCCcccccc------cC--------------
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY------ERPALSKGY------LL--------------   55 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~------~~~~l~~~~------~~--------------   55 (479)
                      +.+|||+||||||||++||..|+++|.+   |+|||+++..++      ...++..++      +.              
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~  106 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY  106 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999999999987   999998642211      111110000      00              


Q ss_pred             CCCCCC--CCCccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCc
Q 011700           56 PEAPAR--LPSFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARA  125 (479)
Q Consensus        56 ~~~~~~--~~~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~  125 (479)
                      ......  ...+....      ...........++..+++++.+ .+..++.....+...+|+  ++.||+||||||++|
T Consensus       107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p  185 (519)
T 3qfa_A          107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP  185 (519)
T ss_dssp             TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence            000000  00000000      0000001123455679999988 577777766666666664  799999999999999


Q ss_pred             ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700          126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  205 (479)
                      +.|++   +|.+ ..++   +..++..    +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. ++++
T Consensus       186 ~~p~i---~G~~-~~~~---t~~~~~~----l~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~  251 (519)
T 3qfa_A          186 RYLGI---PGDK-EYCI---SSDDLFS----LP-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQD  251 (519)
T ss_dssp             CCCCC---TTHH-HHCB---CHHHHTT----CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred             CCCCC---CCcc-CceE---cHHHHhh----hh-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHH
Confidence            98876   5532 1121   2222211    11 24789999999999999999999999999999985 66665 8999


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCC---CcE-EEEEeCCCc---EEeccEEEEecCCCCChhhh---hccccc--
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKV-VAVNLRDGN---RLPTDMVVVGIGIRPNTSLF---EGQLTL--  273 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~---g~v-~~v~~~~g~---~i~~D~Vi~a~G~~p~~~l~---~~~~~~--  273 (479)
                      +.+.+.+.++++||++++++.+.+++..++   +.+ ..+...++.   ++++|.|++++|++|+++++   ..++..  
T Consensus       252 ~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~  331 (519)
T 3qfa_A          252 MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE  331 (519)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCT
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcC
Confidence            999999999999999999988888875332   222 223345552   57899999999999999853   335666  


Q ss_pred             ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcce
Q 011700          274 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSW  352 (479)
Q Consensus       274 ~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~  352 (479)
                      ++|+|.||+++||++|+|||+|||+....         .++..|..||++||+||++.... .++..+|+  ..+++.++
T Consensus       332 ~~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~  400 (519)
T 3qfa_A          332 KTGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--TVFTPLEY  400 (519)
T ss_dssp             TTCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSCE
T ss_pred             CCCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--EEECCCce
Confidence            36889999999999999999999984221         46778999999999999976532 46666775  55678899


Q ss_pred             EeecCCCceEEE-------------Ecc--------CCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCC
Q 011700          353 QFYGDNVGEVVH-------------YGN--------FSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQP  407 (479)
Q Consensus       353 ~~~G~~~~~~~~-------------~~~--------~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~  407 (479)
                      +.+|+++.++..             +..        .....|.++.+   ++++|||+|++|+++.|+ +.++.||++++
T Consensus       401 a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~  480 (519)
T 3qfa_A          401 GACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGL  480 (519)
T ss_dssp             EEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTC
T ss_pred             EEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence            999998754321             110        01245776655   269999999999999998 56899999999


Q ss_pred             CcCcHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700          408 VVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL  446 (479)
Q Consensus       408 ~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
                      |++||.+++..||+++|.+.+..++|+||.+....|||+
T Consensus       481 t~~~l~~~~~~hPt~~E~~~~~~~~~~~~~~~~~~~~~~  519 (519)
T 3qfa_A          481 TKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGSCG  519 (519)
T ss_dssp             BHHHHHHSCCCTTCGGGGGGGCCCBTTTTCCCCCCCTTC
T ss_pred             CHHHHhccccCCCChHHHHHHHHhhhhcCCChhhccCCC
Confidence            999999999999999999999999999999888999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=2.4e-51  Score=425.52  Aligned_cols=411  Identities=17%  Similarity=0.226  Sum_probs=302.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC------CCCCCCcc-----c-ccccCCCC----CCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV------APYERPAL-----S-KGYLLPEA----PARLP   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~------~~~~~~~l-----~-~~~~~~~~----~~~~~   63 (479)
                      |++++||+||||||||++||.+|++ +|++   |+|||+...      ..+...++     + +.++....    ....+
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~   80 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESA   80 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHH
Confidence            6667999999999999999999999 8987   999993110      00111111     0 00000000    00000


Q ss_pred             CcccccCC--------cc-----------cCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeC---C-----CcEEEec
Q 011700           64 SFHTCVGA--------NE-----------ERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTA---T-----GETISYK  115 (479)
Q Consensus        64 ~~~~~~~~--------~~-----------~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~---~-----g~~~~~d  115 (479)
                      .+......        ..           .......+++. +++++.+ .+..++  .+++.+.   +     ++++.||
T Consensus        81 ~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d  157 (495)
T 2wpf_A           81 GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQAD  157 (495)
T ss_dssp             TTTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEE
T ss_pred             hcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcC
Confidence            00000000        00           00112234567 9999998 466665  3677765   4     6789999


Q ss_pred             eEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEEe
Q 011700          116 ILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVF  192 (479)
Q Consensus       116 ~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~  192 (479)
                      +||||||++|+.|++   +|.+  .+++..   ++..    +.. .+++++|||+|++|+|+|..|.++   |.+||+++
T Consensus       158 ~lViATGs~p~~p~i---~G~~--~~~~~~---~~~~----~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~  224 (495)
T 2wpf_A          158 HILLATGSWPQMPAI---PGIE--HCISSN---EAFY----LPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCY  224 (495)
T ss_dssp             EEEECCCEEECCCCC---TTGG--GCEEHH---HHTT----CSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEEeCCCCcCCCCC---CCcc--ccccHH---HHHh----hhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEE
Confidence            999999999998876   5542  343322   2211    111 478999999999999999999999   99999999


Q ss_pred             ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hc
Q 011700          193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EG  269 (479)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~  269 (479)
                      +.+++++. +++++.+.+.+.++++||++++++.|++++.++++. ..+.+.+|+++++|.|++|+|++|+++.+   +.
T Consensus       225 ~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~  302 (495)
T 2wpf_A          225 RNNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV  302 (495)
T ss_dssp             SSSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred             cCCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence            99999986 899999999999999999999999999998743333 46788899999999999999999999732   33


Q ss_pred             cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEee
Q 011700          270 QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRV  347 (479)
Q Consensus       270 ~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~  347 (479)
                      ++.. ++|+|.||+++||++|+|||+|||+..+          .++..|..||+.||.||++... ..+|..+|+  ..+
T Consensus       303 gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~  370 (495)
T 2wpf_A          303 GVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVF  370 (495)
T ss_dssp             TCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EEC
T ss_pred             CccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEE
Confidence            5666 4788999999999999999999999743          4678899999999999998542 245666664  556


Q ss_pred             cCcceEeecCCCceE------EEEc------------cCCCCce-EEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHc
Q 011700          348 FTLSWQFYGDNVGEV------VHYG------------NFSGTTF-GAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRL  405 (479)
Q Consensus       348 ~~~~~~~~G~~~~~~------~~~~------------~~~~~~~-~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~  405 (479)
                      ++.+++++|+++.++      +...            ......| .++.+  ++++|+|+|++|+++.|+ +.++.||+.
T Consensus       371 ~~~~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~  450 (495)
T 2wpf_A          371 SIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRL  450 (495)
T ss_dssp             CSSCEEEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence            788999999986543      1110            1122457 77665  589999999999999997 668999999


Q ss_pred             CCCcCcHHHHhhcCCCcccccCCCC-CCCCCCCCCccccc
Q 011700          406 QPVVEDLAELETQGLGFALAVSQKP-LPSTPVDGKTVPGL  444 (479)
Q Consensus       406 ~~~~~dl~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~  444 (479)
                      ++|++||.+++..||++++.+.+.. .++.||.+....||
T Consensus       451 ~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~  490 (495)
T 2wpf_A          451 NAKISDFYNTIGVHPTSAEELCSMRTPSYYYVKGEKMEKL  490 (495)
T ss_dssp             TCBHHHHHHSCCCSSCSGGGGGSCCSCSEEEETTEEESSC
T ss_pred             CCCHHHHhhcccCCCChHHHHHHHHHHhhhcCCchhhcCC
Confidence            9999999999999999999998875 67777766666666

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.8e-49  Score=394.75  Aligned_cols=344  Identities=24%  Similarity=0.389  Sum_probs=278.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .|++|||||+||++||..|+++| +   |+|||+++..+|.++.+++.+. ..  ...        ........+++++.
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~-g~--~~~--------~~~~~~~~~~~~~~   73 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIA-GF--IPR--------NRLFPYSLDWYRKR   73 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHT-TS--SCG--------GGGCSSCHHHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHh-CC--CCH--------HHhccCCHHHHHhC
Confidence            69999999999999999999877 4   9999999887777776654221 10  000        11223467788899


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCC
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGN  164 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~  164 (479)
                      +++++.+++|..++++.++|. .+++++.||+||||||++|+.|++   +|  .+++++++++.++..+.+.+..  +++
T Consensus        74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~i---~G--~~~v~~~~~~~~~~~l~~~~~~--~~~  145 (367)
T 1xhc_A           74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQI---KG--KEYLLTLRTIFDADRIKESIEN--SGE  145 (367)
T ss_dssp             TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCCS---BT--GGGEECCCSHHHHHHHHHHHHH--HSE
T ss_pred             CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCCC---CC--cCCEEEEcCHHHHHHHHHHhhc--CCc
Confidence            999999988999999988888 678889999999999999998876   55  3578888888888888766542  589


Q ss_pred             EEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC
Q 011700          165 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR  244 (479)
Q Consensus       165 vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~  244 (479)
                      ++|||+|++|+|+|..|+++|.+||++++.+++++  +++++.+.+.+.++++||++++++++++++.  +    .+.+.
T Consensus       146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~----~v~~~  217 (367)
T 1xhc_A          146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE--E----GVLTN  217 (367)
T ss_dssp             EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS--S----EEEET
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--e----EEEEC
Confidence            99999999999999999999999999999999888  8999999999999999999999999999962  2    46778


Q ss_pred             CCcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHH
Q 011700          245 DGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH  323 (479)
Q Consensus       245 ~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~  323 (479)
                      +|+ +++|.|++|+|++|++++++. ++..+ ++|.||+++||+.|+|||+|||+..+...      ..++..|..||+.
T Consensus       218 ~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~~  289 (367)
T 1xhc_A          218 SGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQARV  289 (367)
T ss_dssp             TEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHHH
T ss_pred             CCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHHH
Confidence            887 999999999999999987654 45555 45999999999999999999999753221      1468899999999


Q ss_pred             HHHHHcCCCCCCCCCC-CCeEEEeecCcceEeecCCCceEEEEccCCCCceEEEEccCCEEEEEEEeCCCHH
Q 011700          324 AVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKE  394 (479)
Q Consensus       324 aa~~i~~~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~  394 (479)
                      ||+||++..  ..|+. +|+.+..+++.+++++|+++.++...     ..|.+++.++++|+|++++|+.+.
T Consensus       290 aa~~i~g~~--~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-----~~~~k~~~~~~~ilG~~~~g~~~~  354 (367)
T 1xhc_A          290 LADILKGEP--RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI-----EDNTKVFYENGKIIGAVVFNDIRK  354 (367)
T ss_dssp             HHHHHTTCC--CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE-----ETTEEEEC-----CEEEEESCHHH
T ss_pred             HHHHhcCCC--ccCCCCCCceEEEECCceEEEECCCCCCCccc-----ceEEEEEEECCEEEEEEEECChHH
Confidence            999999864  34555 45445678999999999988765433     357778888899999999997654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=5.1e-49  Score=395.97  Aligned_cols=369  Identities=24%  Similarity=0.335  Sum_probs=289.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccC-CCHh
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER-LTPK   79 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   79 (479)
                      |+.++||||||||+||++||..|+++|.+ .+|+++|+++...|.++.++..+....    .+       ..... ....
T Consensus         1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~-~~V~lie~~~g~~~~~~~l~~~~~~~~----~~-------~~~~~~~~~~   68 (384)
T 2v3a_A            1 MSERAPLVIIGTGLAGYNLAREWRKLDGE-TPLLMITADDGRSYSKPMLSTGFSKNK----DA-------DGLAMAEPGA   68 (384)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHTTCSS-SCEEEECSSCCCEECGGGGGGTTTTTC----CH-------HHHEEECHHH
T ss_pred             CCCCCcEEEECChHHHHHHHHHHHhhCCC-CCEEEEECCCCCccCcccccHHHhCCC----CH-------HHhhccCHHH
Confidence            77789999999999999999999998853 459999999766666655544321100    00       01111 2345


Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS  159 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~  159 (479)
                      ++++.+++++.++++..++.+.+++.+.+ .++.||+||+|||++|..|++   +|.+.+++++.+++.++..+...+. 
T Consensus        69 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~i---~g~~~~~v~~~~~~~~~~~~~~~~~-  143 (384)
T 2v3a_A           69 MAEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVPV---EGDAQDALYPINDLEDYARFRQAAA-  143 (384)
T ss_dssp             HHHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCCC---BSTTTTCEEECSSHHHHHHHHHHHT-
T ss_pred             HHHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCCC---CCcCcCCEEEECCHHHHHHHHHhhc-
Confidence            66788999999888999998888888864 479999999999999998876   6655567999999998888777665 


Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                       .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++++++.+ ++. .
T Consensus       144 -~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~  220 (384)
T 2v3a_A          144 -GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEG-L  220 (384)
T ss_dssp             -TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTE-E
T ss_pred             -cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCE-E
Confidence             3899999999999999999999999999999999999887679999999999999999999999999999873 332 4


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhhhh-cccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHH
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSAR  318 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~-~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~  318 (479)
                      .+.+.+|+++++|.|++|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+..+..      ..+++..|.
T Consensus       221 ~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~------~~~~~~~a~  293 (384)
T 2v3a_A          221 EAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLM  293 (384)
T ss_dssp             EEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTB------CCCSHHHHH
T ss_pred             EEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCC------CcchHHHHH
Confidence            67888999999999999999999998764 35666656 99999999999999999999975422      125678899


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCc---eEEEEccCCCCceEEEEc-cCCEEEEEEEeCCCHH
Q 011700          319 KSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG---EVVHYGNFSGTTFGAYWV-NKGRLVGSFLEGGTKE  394 (479)
Q Consensus       319 ~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~~i~G~~~~g~~~~  394 (479)
                      .||+.+|+||++.....+|..+|+.+. ...+++..+|....   +....++.  ..|.+++. ++++|+|+|++|++++
T Consensus       294 ~~g~~~a~~i~g~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~--~g~~~~~~~~~~~i~G~~~~g~~a~  370 (384)
T 2v3a_A          294 ACARALAQTLAGNPSQVAYGPMPVTVK-TPACPLVVSPPPRGMDGQWLVEGSG--TDLKVLCRDTAGRVIGYALTGAAVN  370 (384)
T ss_dssp             HHHHHHHHHHTTCCCCCCCCCCCEEEC-CTTSCEEEECCCTTCCCEEEEEEET--TEEEEEEECTTSCEEEEEEEGGGGG
T ss_pred             HHHHHHHHHhcCCCccCCCCCcceEEE-ECCeeEEEecCCCCCCceEEEEecC--CcEEEEEEccCCEEEEEEEECcchH
Confidence            999999999998654455667786432 13467888887543   33334443  34666555 5899999999999999


Q ss_pred             HHHHH
Q 011700          395 EYEAI  399 (479)
Q Consensus       395 e~~~~  399 (479)
                      |+..+
T Consensus       371 e~~~~  375 (384)
T 2v3a_A          371 EKLAL  375 (384)
T ss_dssp             GHHHH
T ss_pred             HHHHH
Confidence            87543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-49  Score=411.16  Aligned_cols=398  Identities=15%  Similarity=0.188  Sum_probs=292.3

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCC----CCCCCCCCccccc-----
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLP----EAPARLPSFHTCV-----   69 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~----~~~~~~~~~~~~~-----   69 (479)
                      ++++||+|||||+||++||..|++.|.+   |+|||+++...  .+..+++. .++..    ........+....     
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   85 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLD   85 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence            3468999999999999999999999887   99999985210  00001100 00000    0000000000000     


Q ss_pred             ----CCc--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCc--EEEeceEEeecCCCcccc-
Q 011700           70 ----GAN--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGE--TISYKILIIATGARALKL-  128 (479)
Q Consensus        70 ----~~~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~--~~~~d~lviAtG~~~~~~-  128 (479)
                          ..+              ....+...+++.+++++.+ .+..++.....+...+++  ++.||+||||||++|..| 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~  164 (479)
T 2hqm_A           86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPE  164 (479)
T ss_dssp             GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCT
T ss_pred             cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCC
Confidence                000              0001123455789999988 466676655556666776  899999999999999887 


Q ss_pred             cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700          129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS  208 (479)
Q Consensus       129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  208 (479)
                      ++   +|.+  .++   +..+...    +. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+
T Consensus       165 ~i---~g~~--~~~---~~~~~~~----l~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~  230 (479)
T 2hqm_A          165 NI---PGFE--LGT---DSDGFFR----LE-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQN  230 (479)
T ss_dssp             TS---TTGG--GSB---CHHHHHH----CS-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHH
T ss_pred             CC---CCcc--ccc---chHHHhc----cc-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHH
Confidence            66   5542  222   2222222    12 25799999999999999999999999999999999999886 8999999


Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChhh-hh-ccccc-ccCcEEEcCcc
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSL-FE-GQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~l-~~-~~~~~-~~g~i~Vd~~l  284 (479)
                      .+.+.+++.||+++++++|++++.++++.+..+.+.+| +++++|.|++|+|++|++.+ ++ .++.. ++|+|.||+++
T Consensus       231 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~  310 (479)
T 2hqm_A          231 TITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQ  310 (479)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTC
T ss_pred             HHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCC
Confidence            99999999999999999999998744443456888898 78999999999999999965 33 35666 57889999999


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC---C-CCCCCCCCeEEEeecCcceEeecCCCc
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD---K-TDKFDYLPFFYSRVFTLSWQFYGDNVG  360 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~---~-~~~~~~~p~~~~~~~~~~~~~~G~~~~  360 (479)
                      ||+.|+|||+|||++.+          .++..|..||+.||.||++..   . ..+|..+|+  ..+++.+++.+|+++.
T Consensus       311 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~--~~~~~~~~~~vGl~e~  378 (479)
T 2hqm_A          311 NTNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPS--VIFSHPEAGSIGISEK  378 (479)
T ss_dssp             BCSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCE--EECCSSCEEEEECCHH
T ss_pred             ccCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCe--EEECCCCeEEEeCCHH
Confidence            99999999999998653          457789999999999999754   2 245666775  4456788999998765


Q ss_pred             eEE--------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhh
Q 011700          361 EVV--------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELET  417 (479)
Q Consensus       361 ~~~--------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~  417 (479)
                      ++.        ...            ......|.++.+  ++++|+|+|++|++++|+ +.++.||+.++|++||.+++.
T Consensus       379 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~  458 (479)
T 2hqm_A          379 EAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVA  458 (479)
T ss_dssp             HHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCC
T ss_pred             HHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcC
Confidence            431        111            011245666655  589999999999999997 568999999999999999999


Q ss_pred             cCCCcccccCCC
Q 011700          418 QGLGFALAVSQK  429 (479)
Q Consensus       418 ~~~~~a~~~~~~  429 (479)
                      .||+++|.+.+.
T Consensus       459 ~hPt~~e~~~~~  470 (479)
T 2hqm_A          459 IHPTSAEELVTM  470 (479)
T ss_dssp             CSSCSGGGGGSC
T ss_pred             CCCChHHHHHHH
Confidence            999998888765

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=4.8e-51  Score=422.96  Aligned_cols=406  Identities=17%  Similarity=0.218  Sum_probs=301.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEc---------CCCCCCCCCCccccc------ccCCCC----CCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIIS---------EEPVAPYERPALSKG------YLLPEA----PARL   62 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie---------~~~~~~~~~~~l~~~------~~~~~~----~~~~   62 (479)
                      +++||+||||||||++||.+|++ .|++   |+|||         +..   +...++..+      ++....    ....
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~---~GG~c~~~gciPsk~l~~~a~~~~~~~~~   75 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAA---LGGTCVNVGCVPKKLMVTGANYMDTIRES   75 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSC---TTCHHHHHSHHHHHHHHHHHHHHHHHHHG
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCC---cCccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999 8987   99999         321   111111100      000000    0000


Q ss_pred             CCcccccCC-----c--------------ccCCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeC-----CC---cEEEe
Q 011700           63 PSFHTCVGA-----N--------------EERLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTA-----TG---ETISY  114 (479)
Q Consensus        63 ~~~~~~~~~-----~--------------~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~-----~g---~~~~~  114 (479)
                      +.+......     +              ........+++. +++++.+ .+..++.  +++.+.     ++   +++.|
T Consensus        76 ~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~  152 (490)
T 1fec_A           76 AGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDT  152 (490)
T ss_dssp             GGGTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEE
T ss_pred             HhcCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEc
Confidence            000000000     0              000112334567 9999998 4667765  456553     56   68999


Q ss_pred             ceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC---CCeEEEE
Q 011700          115 KILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMV  191 (479)
Q Consensus       115 d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv  191 (479)
                      |+||||||++|..|++   +|.+  .++   +..++..    +. ..+++++|||+|++|+|+|..|.++   |.+||++
T Consensus       153 d~lviAtGs~p~~p~i---~g~~--~~~---~~~~~~~----~~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv  219 (490)
T 1fec_A          153 EYILLATGSWPQHLGI---EGDD--LCI---TSNEAFY----LD-EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLA  219 (490)
T ss_dssp             EEEEECCCEEECCCCS---BTGG--GCB---CHHHHTT----CS-SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEeCCCCCCCCCC---CCcc--cee---cHHHHhh----hh-hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEE
Confidence            9999999999998876   5542  222   3333221    11 1478999999999999999999999   9999999


Q ss_pred             eecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh-h-h-h
Q 011700          192 FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS-L-F-E  268 (479)
Q Consensus       192 ~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~-l-~-~  268 (479)
                      ++.+++++. +++++.+.+.+.++++||++++++.|++++.++++. ..+.+.+|+++++|.|++|+|++|+++ + + .
T Consensus       220 ~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~  297 (490)
T 1fec_A          220 YRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEK  297 (490)
T ss_dssp             ESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGG
T ss_pred             EcCCCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchh
Confidence            999999986 899999999999999999999999999998743333 467888998999999999999999997 3 3 3


Q ss_pred             ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEe
Q 011700          269 GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSR  346 (479)
Q Consensus       269 ~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~  346 (479)
                      .++.. ++|+|.||++|||++|+|||+|||+..+          .++..|..||+.++.||++... ..+|..+|+  ..
T Consensus       298 ~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~  365 (490)
T 1fec_A          298 AGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AV  365 (490)
T ss_dssp             GTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EE
T ss_pred             cCccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EE
Confidence            35666 4788999999999999999999999743          4678899999999999998532 245666774  55


Q ss_pred             ecCcceEeecCCCceEE------EEc------------cCCCCceE-EEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHH
Q 011700          347 VFTLSWQFYGDNVGEVV------HYG------------NFSGTTFG-AYWV--NKGRLVGSFLEGGTKEEY-EAIAKATR  404 (479)
Q Consensus       347 ~~~~~~~~~G~~~~~~~------~~~------------~~~~~~~~-~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~  404 (479)
                      +++.+++++|+++.++.      ...            +.....|. ++.+  ++++|+|+|++|+++.|+ +.++.||+
T Consensus       366 ~~~~~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~  445 (490)
T 1fec_A          366 FSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLK  445 (490)
T ss_dssp             CCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             ECCCCeEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence            67889999999865431      110            11224566 7665  489999999999999997 66899999


Q ss_pred             cCCCcCcHHHHhhcCCCcccccCCCC-CCCCCCCCCccccc
Q 011700          405 LQPVVEDLAELETQGLGFALAVSQKP-LPSTPVDGKTVPGL  444 (479)
Q Consensus       405 ~~~~~~dl~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~  444 (479)
                      .++|++||.+++..||++++.+.+.. .++.||.+..+.+|
T Consensus       446 ~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~  486 (490)
T 1fec_A          446 MGAKISDFYNTIGVHPTSAEELCSMRTPAYFYEKGKRVEKI  486 (490)
T ss_dssp             TTCBHHHHHTSCCCSSCSGGGGGSCCSCSEEEETTEEECC-
T ss_pred             cCCCHHHHhccccCCCCHHHHHHHHHHHHhhcCcccccccc
Confidence            99999999999999999999998885 77888777667777

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=3.3e-49  Score=406.47  Aligned_cols=406  Identities=18%  Similarity=0.229  Sum_probs=298.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-cc------------------ccCCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KG------------------YLLPEAP   59 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~------------------~~~~~~~   59 (479)
                      |++++||+|||||+||++||.+|++.|++   |+|||+++...  .+..+++ +.                  +......
T Consensus         1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (463)
T 2r9z_A            1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGT   77 (463)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred             CCccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            77789999999999999999999998887   99999984210  0000000 00                  0000000


Q ss_pred             CCCCCcccccC---CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC
Q 011700           60 ARLPSFHTCVG---ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS  136 (479)
Q Consensus        60 ~~~~~~~~~~~---~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~  136 (479)
                      .+++.+.....   ......+...+++.+++++.++ +..++  .+++.+ +++++.||+||||||++|..|++   +|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~i---~G~  150 (463)
T 2r9z_A           78 LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGH-ARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPRL---PGA  150 (463)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCSC---TTG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeE-EEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCCC---CCc
Confidence            00000000000   0000011234467899999984 55565  357777 67789999999999999988876   554


Q ss_pred             CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700          137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS  216 (479)
Q Consensus       137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~  216 (479)
                      +  .++   +..++..    +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus       151 ~--~~~---~~~~~~~----~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  219 (463)
T 2r9z_A          151 E--LGI---TSDGFFA----LQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHA  219 (463)
T ss_dssp             G--GSB---CHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             c--cee---cHHHHhh----hhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            2  222   3333322    222 4789999999999999999999999999999999998886 899999999999999


Q ss_pred             CCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700          217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      +||++++++++++++.++++  ..+.+.+|+ ++++|.|++|+|++|+++.  ++ .++.. ++|+|.||+++||++|+|
T Consensus       220 ~gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I  297 (463)
T 2r9z_A          220 QGIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGV  297 (463)
T ss_dssp             TTCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTE
T ss_pred             CCCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCE
Confidence            99999999999999874333  467888998 8999999999999999973  23 35666 478899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCceEE------
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVGEVV------  363 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------  363 (479)
                      ||+|||+..+          .++..|..||+.+|.||++....  .+|..+|+  ..+++.+++++|+++.++.      
T Consensus       298 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vGl~e~~a~~~~g~~  365 (463)
T 2r9z_A          298 YALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPT--VVFAHPPLSKVGLSEPEARERLGDV  365 (463)
T ss_dssp             EECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCE--EECCSSCEEEEECCHHHHHHHHCSC
T ss_pred             EEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCE--EEeCCCCeEEEcCCHHHHHhcCCCC
Confidence            9999998753          45778999999999999975422  35666775  4456788999998754321      


Q ss_pred             -EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          364 -HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       364 -~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                       ...            ......|.++.+  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  445 (463)
T 2r9z_A          366 LTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELV  445 (463)
T ss_dssp             EEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGG
T ss_pred             EEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHH
Confidence             110            111245666655  589999999999999887 7789999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcc
Q 011700          428 QKPLPSTPVDGKTV  441 (479)
Q Consensus       428 ~~~~~~~~~~~~~~  441 (479)
                      +...+++||.+..+
T Consensus       446 ~~~~~~~~~~~~~~  459 (463)
T 2r9z_A          446 TLKEPVRRPGDPLP  459 (463)
T ss_dssp             CCCSCSBCCC----
T ss_pred             HHHhhcccCCCccc
Confidence            99888888765443

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=1.4e-50  Score=419.30  Aligned_cols=405  Identities=18%  Similarity=0.180  Sum_probs=295.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCccccccc--------------------C
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALSKGYL--------------------L   55 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~~~~~--------------------~   55 (479)
                      .+|||+||||||||++||.+|+++|++   |+|||+....+       +...++..++.                    +
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~   84 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY   84 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence            368999999999999999999999987   99999532111       11111111000                    0


Q ss_pred             CCCCCCCCCccc--cc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcc
Q 011700           56 PEAPARLPSFHT--CV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARAL  126 (479)
Q Consensus        56 ~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~  126 (479)
                      .-.....+.+..  ..      ...........++..+++++.+ .+..++.....+...++ +++.||+||||||++|+
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~  163 (483)
T 3dgh_A           85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR  163 (483)
T ss_dssp             TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred             CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence            000000000000  00      0000001123356679999988 55566666556666666 47999999999999999


Q ss_pred             cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700          127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI  206 (479)
Q Consensus       127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  206 (479)
                      .|++   +|.+. ..+   +..+...    +. ..+++++|||+|++|+|+|..|+++|.+|+++++. .+++. +++++
T Consensus       164 ~p~i---~G~~~-~~~---~~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  229 (483)
T 3dgh_A          164 YPDI---PGAVE-YGI---TSDDLFS----LD-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM  229 (483)
T ss_dssp             CCSS---TTHHH-HCB---CHHHHTT----CS-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred             CCCC---CCccc-ccC---cHHHHhh----hh-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence            8876   55431 111   2222211    11 24789999999999999999999999999999884 56665 79999


Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-----EEeccEEEEecCCCCChhhh---hcccccccCcE
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGI  278 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~Vi~a~G~~p~~~l~---~~~~~~~~g~i  278 (479)
                      .+.+.+.++++||++++++.+.+++..+++.+ .+.+.+++     ++++|.|++|+|++|+++++   ..++..++|+|
T Consensus       230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i  308 (483)
T 3dgh_A          230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI  308 (483)
T ss_dssp             HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence            99999999999999999999999987445443 46665543     79999999999999999875   23566655899


Q ss_pred             EEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecC
Q 011700          279 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGD  357 (479)
Q Consensus       279 ~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~  357 (479)
                      .||+++||++|+|||+|||+....         ..+..|..||+.||+||++.... .+|..+|+  ..+.+.+++.+|+
T Consensus       309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vGl  377 (483)
T 3dgh_A          309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGSTQRMDYKDVAT--TVFTPLEYACVGL  377 (483)
T ss_dssp             CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSEEEEEEC
T ss_pred             EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE--EEECCCccEEEeC
Confidence            999999999999999999984211         45778999999999999986532 46777785  4456788999999


Q ss_pred             CCceEEE--------E-----cc-----C---CCCceEEEEc--c-CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcH
Q 011700          358 NVGEVVH--------Y-----GN-----F---SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDL  412 (479)
Q Consensus       358 ~~~~~~~--------~-----~~-----~---~~~~~~~~~~--~-~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl  412 (479)
                      ++.++..        .     ..     .   ....|.++.+  + +++|||+|++|+++.|+ +.++.||+.++|++||
T Consensus       378 te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l  457 (483)
T 3dgh_A          378 SEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTL  457 (483)
T ss_dssp             CHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred             CHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence            8754321        0     00     0   1235666554  3 69999999999999998 5689999999999999


Q ss_pred             HHHhhcCCCcccccCCCCCCCCCCC
Q 011700          413 AELETQGLGFALAVSQKPLPSTPVD  437 (479)
Q Consensus       413 ~~~~~~~~~~a~~~~~~~~~~~~~~  437 (479)
                      .+++..||+++|.+.+..++|+||.
T Consensus       458 ~~~~~~hPt~~e~~~~~~~~~~~~~  482 (483)
T 3dgh_A          458 INTVGIHPTTAEEFTRLAITKRSGL  482 (483)
T ss_dssp             HTSCCCSSCSGGGGGGCCCBTTTBT
T ss_pred             hhcccCCCChHHHHHHHHhHHhccC
Confidence            9999999999999999999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=5.3e-49  Score=403.64  Aligned_cols=395  Identities=18%  Similarity=0.204  Sum_probs=289.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccccCCC----CCC-CCCCcccccCC-
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGYLLPE----APA-RLPSFHTCVGA-   71 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~~~~~----~~~-~~~~~~~~~~~-   71 (479)
                      |++++||+|||||+||++||.+|++.|++   |+|||+++...  .+..+++ +.++...    ... ..+.+...... 
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~   77 (450)
T 1ges_A            1 MTKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTIN   77 (450)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEE
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence            77789999999999999999999998886   99999984210  0000010 0000000    000 00000000000 


Q ss_pred             ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCC
Q 011700           72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSG  135 (479)
Q Consensus        72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g  135 (479)
                                      .........+++.+++++.++ +..++.  +++.+ ++++++||+||||||++|..|++   +|
T Consensus        78 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~i---~g  150 (450)
T 1ges_A           78 KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF-ARFVDA--KTLEV-NGETITADHILIATGGRPSHPDI---PG  150 (450)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCCS---TT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCCC---CC
Confidence                            000011233467899999984 555664  56777 67789999999999999988876   55


Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700          136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK  215 (479)
Q Consensus       136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~  215 (479)
                      .+  .+   .+..+...    +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++
T Consensus       151 ~~--~~---~~~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~  219 (450)
T 1ges_A          151 VE--YG---IDSDGFFA----LPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMN  219 (450)
T ss_dssp             GG--GS---BCHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred             cc--ce---ecHHHhhh----hhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHH
Confidence            42  22   23333322    222 4799999999999999999999999999999999998885 89999999999999


Q ss_pred             hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700          216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      +.||++++++++++++.++++. ..+.+.+|+++++|.|++|+|++|+++.  ++ .++.. ++|+|.||+++||++|+|
T Consensus       220 ~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~I  298 (450)
T 1ges_A          220 AEGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGI  298 (450)
T ss_dssp             HHSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred             HCCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCE
Confidence            9999999999999998743343 3578889989999999999999999973  33 35666 478899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-C-CCCCCCCeEEEeecCcceEeecCCCceEEEE-c--
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-T-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY-G--  366 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-~--  366 (479)
                      ||+|||+..+          .++..|..||+.+|.||++... . .+|..+|+  ..+++.+++.+|+++.++... +  
T Consensus       299 yA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~~g~~  366 (450)
T 1ges_A          299 YAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPT--VVFSHPPIGTVGLTEPQAREQYGDD  366 (450)
T ss_dssp             EECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCE--EECCSSCEEEEECCHHHHHHHHCGG
T ss_pred             EEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEEeCCHHHHHhcCCCC
Confidence            9999998753          4577899999999999998542 2 35666775  445678899999876443211 0  


Q ss_pred             -----------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          367 -----------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       367 -----------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                                       ......|.++.+  ++++|+|+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (450)
T 1ges_A          367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  446 (450)
T ss_dssp             GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHH
Confidence                             111234666555  589999999999999997 668999999999999999999999998877


Q ss_pred             CCC
Q 011700          427 SQK  429 (479)
Q Consensus       427 ~~~  429 (479)
                      .+.
T Consensus       447 ~~~  449 (450)
T 1ges_A          447 VTM  449 (450)
T ss_dssp             GSC
T ss_pred             Hhh
Confidence            643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=7.6e-50  Score=413.42  Aligned_cols=396  Identities=17%  Similarity=0.198  Sum_probs=290.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccc---------cCCCCCCCCC----Ccc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGY---------LLPEAPARLP----SFH   66 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~---------~~~~~~~~~~----~~~   66 (479)
                      .++||+||||||||++||..|+++|++   |+|||++....  .+..+.+ +.+         +.......++    .+.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~   95 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFN   95 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence            468999999999999999999999987   99999875310  0000000 000         0000000000    000


Q ss_pred             cc--c------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc---cccCCCC
Q 011700           67 TC--V------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL---EEFGLSG  135 (479)
Q Consensus        67 ~~--~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~---~~~g~~g  135 (479)
                      ..  .      ...........++..+++++.+ .+..++.....+. .+++++.||+||||||++|..|   ++   +|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i---~G  170 (478)
T 3dk9_A           96 WRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQI---PG  170 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTS---TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCC---CC
Confidence            00  0      0000011223345679999998 4566666666776 4667899999999999999888   55   66


Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700          136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK  215 (479)
Q Consensus       136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~  215 (479)
                      .+  .+   .+..+...    +. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++
T Consensus       171 ~~--~~---~~~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~  239 (478)
T 3dk9_A          171 AS--LG---ITSDGFFQ----LE-ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELE  239 (478)
T ss_dssp             GG--GS---BCHHHHTT----CC-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHH
T ss_pred             Cc--ee---EchHHhhc----hh-hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHH
Confidence            43  11   12222211    11 14799999999999999999999999999999999999875 89999999999999


Q ss_pred             hCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C----cEEeccEEEEecCCCCChhh--h-hccccc-ccCcEEEcCcc
Q 011700          216 SKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G----NRLPTDMVVVGIGIRPNTSL--F-EGQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g----~~i~~D~Vi~a~G~~p~~~l--~-~~~~~~-~~g~i~Vd~~l  284 (479)
                      ++||++++++.+++++..+++....+.+.+   +    +++++|.|++|+|++|+++.  + ..++.. ++|+|.||+++
T Consensus       240 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~  319 (478)
T 3dk9_A          240 NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ  319 (478)
T ss_dssp             HTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC
T ss_pred             HCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc
Confidence            999999999999999875555334566665   2    57999999999999999983  2 345666 67889999999


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC--CCCCCCCCCeEEEeecCcceEeecCCCceE
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  362 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~--~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  362 (479)
                      ||++|+|||+|||++.+          ..+..|..||+.||+||++..  ...+|..+|+  ..+++.+++.+|+++.++
T Consensus       320 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a  387 (478)
T 3dk9_A          320 NTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPT--VVFSHPPIGTVGLTEDEA  387 (478)
T ss_dssp             BCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCE--EECCSSCEEEEECCHHHH
T ss_pred             ccCCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCe--EEECCCceEEeeCCHHHH
Confidence            99999999999999654          457789999999999999862  2246677785  456678899999987643


Q ss_pred             EE-------------Ecc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcC
Q 011700          363 VH-------------YGN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQG  419 (479)
Q Consensus       363 ~~-------------~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~  419 (479)
                      ..             +..       .....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..|
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h  467 (478)
T 3dk9_A          388 IHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIH  467 (478)
T ss_dssp             HHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred             HhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence            21             111       01235666554  689999999999999998 56899999999999999999999


Q ss_pred             CCcccccCCC
Q 011700          420 LGFALAVSQK  429 (479)
Q Consensus       420 ~~~a~~~~~~  429 (479)
                      |+++|.+.+.
T Consensus       468 Pt~~e~~~~~  477 (478)
T 3dk9_A          468 PTSSEELVTL  477 (478)
T ss_dssp             SSSGGGGGSC
T ss_pred             CChHHHHHhc
Confidence            9999987653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=2.9e-50  Score=417.41  Aligned_cols=409  Identities=19%  Similarity=0.205  Sum_probs=294.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CCcccccc-----c---------------CCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE------RPALSKGY-----L---------------LPE   57 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~------~~~l~~~~-----~---------------~~~   57 (479)
                      +|||+||||||||++||..|+++|.+   |+|||+.+..++.      ..++..++     +               +..
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~   82 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW   82 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence            58999999999999999999999987   9999974322211      11110000     0               000


Q ss_pred             CCC--CCCCcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccc
Q 011700           58 APA--RLPSFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALK  127 (479)
Q Consensus        58 ~~~--~~~~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~  127 (479)
                      ...  ....+.....      ..........++..+++++.+ .+..++.....+...+|  .++.||+||||||++|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~  161 (488)
T 3dgz_A           83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY  161 (488)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred             ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence            000  0000000000      000001223455679999987 56655555555555566  579999999999999998


Q ss_pred             cc-ccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700          128 LE-EFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI  206 (479)
Q Consensus       128 ~~-~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  206 (479)
                      |+ +   ||.+. .++   +..+...    +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. +++++
T Consensus       162 p~~i---~G~~~-~~~---~~~~~~~----~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~  227 (488)
T 3dgz_A          162 PTQV---KGALE-YGI---TSDDIFW----LK-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRG-FDQQM  227 (488)
T ss_dssp             CSSC---BTHHH-HCB---CHHHHTT----CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred             CCCC---CCccc-ccC---cHHHHHh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-ccccc-CCHHH
Confidence            87 6   55321 111   2222221    11 25789999999999999999999999999999986 45664 89999


Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EEeccEEEEecCCCCChhhh---hcccccc--cC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLF---EGQLTLE--KG  276 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~---~~~~~~~--~g  276 (479)
                      .+.+.+.++++||++++++.+.+++..+++.+ .+.+.+   |+  ++++|.|++|+|++|+++++   ..++..+  +|
T Consensus       228 ~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G  306 (488)
T 3dgz_A          228 SSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQ  306 (488)
T ss_dssp             HHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSC
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCC
Confidence            99999999999999999999999987444433 344433   54  47999999999999999864   2345553  68


Q ss_pred             cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEee
Q 011700          277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFY  355 (479)
Q Consensus       277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~  355 (479)
                      +|.||+++||++|+|||+|||+....         .++..|..||+.|++||++.... .++..+|+  ..+.+.+++.+
T Consensus       307 ~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~v  375 (488)
T 3dgz_A          307 KIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPT--TVFTPLEYGCV  375 (488)
T ss_dssp             CBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--EECSSSEEEEE
T ss_pred             eEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCccCCCCCCCE--EEECCCCeEEE
Confidence            89999999999999999999984321         45778999999999999986532 46667786  44567889999


Q ss_pred             cCCCceEEE--------Ec-----c-----C---CCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcC
Q 011700          356 GDNVGEVVH--------YG-----N-----F---SGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVE  410 (479)
Q Consensus       356 G~~~~~~~~--------~~-----~-----~---~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~  410 (479)
                      |+++.++..        ..     .     .   ....|.++.+   ++++|||+|++|+++.|+ +.++.||+.++|++
T Consensus       376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~  455 (488)
T 3dgz_A          376 GLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYA  455 (488)
T ss_dssp             ECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred             eCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence            998754311        10     0     0   0245666554   479999999999999998 56899999999999


Q ss_pred             cHHHHhhcCCCcccccCCCCCCCCCCCCCccc
Q 011700          411 DLAELETQGLGFALAVSQKPLPSTPVDGKTVP  442 (479)
Q Consensus       411 dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  442 (479)
                      ||.+++..||+++|.+.++..+|+||.+.+++
T Consensus       456 ~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~  487 (488)
T 3dgz_A          456 QVMQTVGIHPTCSEEVVKLHISKRSGLEPTVT  487 (488)
T ss_dssp             HHHTSCCCSSCSTHHHHTCCEETTTTCCCC--
T ss_pred             HHhccccCCCChHHHHHHHHHHhhcCCCcccC
Confidence            99999999999999999999999998766554

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=5.5e-49  Score=406.56  Aligned_cols=397  Identities=21%  Similarity=0.231  Sum_probs=290.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCcc-cccccCCC-----------CCCCCC----C
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYE---RPAL-SKGYLLPE-----------APARLP----S   64 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~---~~~l-~~~~~~~~-----------~~~~~~----~   64 (479)
                      ++||+|||||+||++||..|+++|++   |+|||+++.....   ..+. ++.++...           ....++    .
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~   82 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR   82 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence            58999999999999999999999886   9999998532100   0000 01000000           000000    0


Q ss_pred             ccc--cc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-C-cEEEeceEEeecCCCcccccccCCC
Q 011700           65 FHT--CV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-G-ETISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        65 ~~~--~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-g-~~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                      +..  ..      .........+++++.+++++.++ +..++.....+.+.+ + ++++||+||+|||++|..|++   +
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i---~  158 (474)
T 1zmd_A           83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPG---I  158 (474)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTT---C
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCC---C
Confidence            000  00      00000012355667899999985 455666555566555 4 579999999999999988877   5


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      |.+..++++   ..++..    +.. .+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+
T Consensus       159 g~~~~~v~t---~~~~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l  230 (474)
T 1zmd_A          159 TIDEDTIVS---STGALS----LKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL  230 (474)
T ss_dssp             CCCSSSEEC---HHHHTT----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHH
T ss_pred             CCCcCcEEc---HHHHhh----ccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHH
Confidence            544344543   222221    112 479999999999999999999999999999999999998458999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEE-----eCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCccc
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVN-----LRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQ  285 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~-----~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~  285 (479)
                      +++||+++++++|++++.++++.+ .+.     ..+++++++|.|++|+|++|++++  ++ .++.. ++|+|.||++||
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~  309 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQ  309 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCB
T ss_pred             HHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCc
Confidence            999999999999999987433323 344     346678999999999999999986  33 35666 468899999999


Q ss_pred             CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE--
Q 011700          286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV--  363 (479)
Q Consensus       286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~--  363 (479)
                      |+.|+|||+|||+..+          ..+..|..||+.||.||++.....+|..+|+  ..+++.+++++|+++.++.  
T Consensus       310 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~  377 (474)
T 1zmd_A          310 TKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGAVHIDYNCVPS--VIYTHPEVAWVGKSEEQLKEE  377 (474)
T ss_dssp             CSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCCCCCCGGGCCE--EECSSSEEEEEECCHHHHHHH
T ss_pred             cCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCCCcCCCCCCCE--EEECCCCeEEEeCCHHHHHhc
Confidence            9999999999999864          3567899999999999998653345666776  4577889999999876431  


Q ss_pred             ----EEc------------cCCCCceEEEEcc--CCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 011700          364 ----HYG------------NFSGTTFGAYWVN--KGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFAL  424 (479)
Q Consensus       364 ----~~~------------~~~~~~~~~~~~~--~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~  424 (479)
                          ...            ......|.+++++  +++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++
T Consensus       378 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e  457 (474)
T 1zmd_A          378 GIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSE  457 (474)
T ss_dssp             TCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHH
T ss_pred             CCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence                110            0112457776663  89999999999999887 6689999999999999999988888887


Q ss_pred             ccCC
Q 011700          425 AVSQ  428 (479)
Q Consensus       425 ~~~~  428 (479)
                      .+.+
T Consensus       458 ~~~~  461 (474)
T 1zmd_A          458 AFRE  461 (474)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=100.00  E-value=2e-48  Score=403.38  Aligned_cols=405  Identities=25%  Similarity=0.381  Sum_probs=306.0

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCC--------CCCCcc--cccC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPA--------RLPSFH--TCVG   70 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~--~~~~   70 (479)
                      |+.++||||||||+||++||..|++.+. ..+|+|||+++..+|.+|++++.++......        .++...  ....
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ   86 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccccccccc
Confidence            5567899999999999999999988732 3459999999988999988887776543210        000000  0000


Q ss_pred             Ccc-cCCCHhH--HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC-CCCeEEecC
Q 011700           71 ANE-ERLTPKW--YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD-AENVCYLRD  146 (479)
Q Consensus        71 ~~~-~~~~~~~--~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~-~~~v~~~~~  146 (479)
                      ... ......+  +.+.+++++.+++|+.++++.++|.+.+|+++.||+||||||++|+.|++++....+ .++++++++
T Consensus        87 ~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~  166 (493)
T 1m6i_A           87 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRK  166 (493)
T ss_dssp             CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCS
T ss_pred             chHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcC
Confidence            000 0000011  135689999999999999999999999999999999999999999887753211001 246888899


Q ss_pred             HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhh----CCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEE
Q 011700          147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVI----NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV  222 (479)
Q Consensus       147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~  222 (479)
                      ..++..+...+.  .+++++|||+|++|+|+|..|.+    .|.+|+++++.+.++++.+++++.+.+.+.++++||+++
T Consensus       167 ~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~  244 (493)
T 1m6i_A          167 IGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM  244 (493)
T ss_dssp             HHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEE
Confidence            988888877665  37999999999999999999987    578999999988888777899999999999999999999


Q ss_pred             cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccc--cCcEEEcCcccCCCCCeEEEeeecc
Q 011700          223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE--KGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~--~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                      +++.|++++.+ ++.+ .+.+.+|+++++|.|++++|++|++++++. ++..+  +|+|.||++||| .|+|||+|||+.
T Consensus       245 ~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~  321 (493)
T 1m6i_A          245 PNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAAC  321 (493)
T ss_dssp             CSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGEE
T ss_pred             eCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeEe
Confidence            99999999863 3443 688899999999999999999999987754 56654  489999999999 699999999999


Q ss_pred             ccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeec-Cc----------ceEeecCCCc-----e--
Q 011700          300 FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVF-TL----------SWQFYGDNVG-----E--  361 (479)
Q Consensus       300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~-~~----------~~~~~G~~~~-----~--  361 (479)
                      .+....|.. +++++..|..||+.||+||++..  ..|...|+||+.++ +.          .+.++|....     +  
T Consensus       322 ~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~  398 (493)
T 1m6i_A          322 FYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA--KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPK  398 (493)
T ss_dssp             EEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC--CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHH
T ss_pred             ccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC--CCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccc
Confidence            776544443 56789999999999999999865  57888999999887 33          3333442100     0  


Q ss_pred             ----------------------EEEE----cc-------CCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCC
Q 011700          362 ----------------------VVHY----GN-------FSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPV  408 (479)
Q Consensus       362 ----------------------~~~~----~~-------~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~  408 (479)
                                            ....    ++       ....+|..|++++|+|+|+.++|.. .++..+..+|+.+.+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~li~~~~~  477 (493)
T 1m6i_A          399 SATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNIF-NRMPIARKIIKDGEQ  477 (493)
T ss_dssp             HHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESCC-SCHHHHHHHHHHCCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecCc-chHHHHHHHHhCCCC
Confidence                                  0000    11       0113456678899999999999953 456667888999999


Q ss_pred             cCcHHHH
Q 011700          409 VEDLAEL  415 (479)
Q Consensus       409 ~~dl~~~  415 (479)
                      ++++.++
T Consensus       478 ~~~~~~~  484 (493)
T 1m6i_A          478 HEDLNEV  484 (493)
T ss_dssp             CSCSTTG
T ss_pred             CCCHHHH
Confidence            8888765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=2.4e-49  Score=409.79  Aligned_cols=398  Identities=18%  Similarity=0.227  Sum_probs=288.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCC---------CCCCCCC----
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLP---------EAPARLP----   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~---------~~~~~~~----   63 (479)
                      |+.++||+|||||+||+++|..|++.|++   |+|||+++....   +..+. ++.++..         .....++    
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~   79 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEP   79 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            55578999999999999999999999887   999999653210   00000 0000000         0000000    


Q ss_pred             --CcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC------------cEEEeceEEeecCC
Q 011700           64 --SFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG------------ETISYKILIIATGA  123 (479)
Q Consensus        64 --~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g------------~~~~~d~lviAtG~  123 (479)
                        .+.....      ......+..++++.+++++.++.+. ++.....+...++            .+++||+||+|||+
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs  158 (482)
T 1ojt_A           80 ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGS  158 (482)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCE
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCC
Confidence              0000000      0000012245567899999986544 4443223333345            67999999999999


Q ss_pred             CcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC
Q 011700          124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT  203 (479)
Q Consensus       124 ~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~  203 (479)
                      +|..|+.  ++ .+ ..++   +..++..+    .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. ++
T Consensus       159 ~p~~~~~--i~-~~-~~v~---~~~~~~~~----~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~  225 (482)
T 1ojt_A          159 RVTKLPF--IP-ED-PRII---DSSGALAL----KE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-AD  225 (482)
T ss_dssp             EECCCSS--CC-CC-TTEE---CHHHHTTC----CC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SC
T ss_pred             CCCCCCC--CC-cc-CcEE---cHHHHhcc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cC
Confidence            9988763  23 22 2343   33333221    11 4799999999999999999999999999999999999986 89


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC----CcEEeccEEEEecCCCCChhhh--h-ccccc-cc
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD----GNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EK  275 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~----g~~i~~D~Vi~a~G~~p~~~l~--~-~~~~~-~~  275 (479)
                      +++.+.+.+.++++||++++++++.+++.++++  ..+.+.+    |+++++|.|++|+|++||++++  + .++.. ++
T Consensus       226 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~  303 (482)
T 1ojt_A          226 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDR  303 (482)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTT
T ss_pred             HHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCe--EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCC
Confidence            999999999999999999999999999873322  3566666    7789999999999999999863  3 35666 45


Q ss_pred             CcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEee
Q 011700          276 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFY  355 (479)
Q Consensus       276 g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~  355 (479)
                      |+|.||++|||+.|+|||+|||+..+          .++..|..||+.||.||++.....++..+|+  ..+++.+++++
T Consensus       304 G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~v  371 (482)
T 1ojt_A          304 GFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHKAYFDARVIPG--VAYTSPEVAWV  371 (482)
T ss_dssp             SCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCCCCCE--EECSSSCEEEE
T ss_pred             CCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEEcCCCeEEE
Confidence            88999999999999999999999854          3577899999999999998653345556674  56788899999


Q ss_pred             cCCCceE------EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHH
Q 011700          356 GDNVGEV------VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAE  414 (479)
Q Consensus       356 G~~~~~~------~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~  414 (479)
                      |+++.++      +..+            ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+
T Consensus       372 G~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~  451 (482)
T 1ojt_A          372 GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGK  451 (482)
T ss_dssp             ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHT
T ss_pred             eCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhc
Confidence            9987543      1111            011245777766  689999999999999887 568999999999999999


Q ss_pred             HhhcCCCcccccCCC
Q 011700          415 LETQGLGFALAVSQK  429 (479)
Q Consensus       415 ~~~~~~~~a~~~~~~  429 (479)
                      ++..||++++.+.+.
T Consensus       452 ~~~~~Pt~~e~~~~a  466 (482)
T 1ojt_A          452 TIHPHPTLGESIGMA  466 (482)
T ss_dssp             SCCCSSSSTTHHHHH
T ss_pred             CccCCCCHHHHHHHH
Confidence            998888888766543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=9.5e-49  Score=404.10  Aligned_cols=395  Identities=19%  Similarity=0.213  Sum_probs=289.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCC----------CCCCCC------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPE----------APARLP------   63 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~----------~~~~~~------   63 (479)
                      ++||+|||||+||++||.+|+++|++   |+|||+++....   +..+. ++.++...          ....++      
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~   78 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT   78 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence            48999999999999999999999886   999999853210   00000 11000000          000000      


Q ss_pred             -Cccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCCC
Q 011700           64 -SFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGLS  134 (479)
Q Consensus        64 -~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~~  134 (479)
                       .+....      .........+++++.+++++.++.+ .++.....+.+.+|  ++++||+||+|||++|..|++   +
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~---~  154 (468)
T 2qae_A           79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGS-FETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPF---L  154 (468)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEE-EEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTT---B
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCC---C
Confidence             000000      0000001234566789999998544 47766556666677  789999999999999998876   4


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      |.+..++++   ..++..+    .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       155 g~~~~~v~t---~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l  225 (468)
T 2qae_A          155 PFDEKVVLS---STGALAL----PR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGAL  225 (468)
T ss_dssp             CCCSSSEEC---HHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred             CCCcCceec---hHHHhhc----cc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHH
Confidence            544345543   3333221    12 4799999999999999999999999999999999999985 8999999999999


Q ss_pred             -HhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCccc
Q 011700          215 -KSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQ  285 (479)
Q Consensus       215 -~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~  285 (479)
                       +++||+++++++|++++.++++ + .+.+.  +|  +++++|.|++|+|++|++++  ++ .++.. ++|+|.||+++|
T Consensus       226 ~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~  303 (468)
T 2qae_A          226 AKNEKMKFMTSTKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE  303 (468)
T ss_dssp             HHHTCCEEECSCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred             hhcCCcEEEeCCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc
Confidence             9999999999999999874333 2 45554  66  67999999999999999986  33 35666 468899999999


Q ss_pred             CCCCCeEEEeeecc-ccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE--
Q 011700          286 SSNSSVYAVGDVAA-FPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV--  362 (479)
Q Consensus       286 t~~~~IyA~GD~~~-~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~--  362 (479)
                      |++|+|||+|||+. .+          ..+..|..||+.||.||++.....++..+|+  ..+++.+++++|+++.++  
T Consensus       304 t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~  371 (468)
T 2qae_A          304 TSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKPGHVNYGVIPA--VIYTMPEVASVGKSEDELKK  371 (468)
T ss_dssp             CSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCCCCCCTTSCCE--EECSSSEEEEEECCHHHHHH
T ss_pred             cCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHh
Confidence            99999999999998 43          4577899999999999998653345566674  567888999999986543  


Q ss_pred             ----EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700          363 ----VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA  423 (479)
Q Consensus       363 ----~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a  423 (479)
                          +...            ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++
T Consensus       372 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  451 (468)
T 2qae_A          372 EGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMS  451 (468)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTH
T ss_pred             cCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHH
Confidence                1110            011245777666  489999999999999887 668999999999999999988888888


Q ss_pred             cccCC
Q 011700          424 LAVSQ  428 (479)
Q Consensus       424 ~~~~~  428 (479)
                      +.+.+
T Consensus       452 e~~~~  456 (468)
T 2qae_A          452 EALKE  456 (468)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76644

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=3e-48  Score=405.19  Aligned_cols=399  Identities=22%  Similarity=0.271  Sum_probs=297.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-----c-cccccCCC---------CCCC-CCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-----L-SKGYLLPE---------APAR-LPS   64 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-----l-~~~~~~~~---------~~~~-~~~   64 (479)
                      |+.++||||||||+||++||.+|++.|.+   |+|||+++..  ...+     + ++.++...         .... ++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~--GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~  114 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFL--GGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPD  114 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSS--SCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC--CCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHH
Confidence            34568999999999999999999999886   9999998631  1111     1 11000000         0000 111


Q ss_pred             cccc------cCCcccCCCH---hHH-----HHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700           65 FHTC------VGANEERLTP---KWY-----NEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE  130 (479)
Q Consensus        65 ~~~~------~~~~~~~~~~---~~~-----~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~  130 (479)
                      +...      ..........   .++     ++.+++++....+..++.  +++.+. ++++.||+||||||++|..|++
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~i  191 (523)
T 1mo9_A          115 MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLDV  191 (523)
T ss_dssp             CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCCS
T ss_pred             HHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCCC
Confidence            0000      0000000122   456     678999984447787775  567765 6789999999999999998876


Q ss_pred             cCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHH
Q 011700          131 FGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYY  210 (479)
Q Consensus       131 ~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~  210 (479)
                         +|.+..++++..++      .+.+...++++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+
T Consensus       192 ---~G~~~~~v~~~~~~------~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l  261 (523)
T 1mo9_A          192 ---PGVNAKGVFDHATL------VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYV  261 (523)
T ss_dssp             ---TTTTSBTEEEHHHH------HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHH
T ss_pred             ---CCcccCcEeeHHHH------HHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHH
Confidence               66555556643322      21233323399999999999999999999999999999999999886 899999999


Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcE--EEEEeCCCc-EEeccEEEEecCCCCChh-hhh-ccccc-ccCcEEEcCcc
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLRDGN-RLPTDMVVVGIGIRPNTS-LFE-GQLTL-EKGGIKVTGRL  284 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v--~~v~~~~g~-~i~~D~Vi~a~G~~p~~~-l~~-~~~~~-~~g~i~Vd~~l  284 (479)
                      .+.++++||+++++++|++++.++++++  ..+.+.+|+ ++++|.|++|+|++|+++ +++ .++.. ++|+|.||+++
T Consensus       262 ~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~  341 (523)
T 1mo9_A          262 LDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL  341 (523)
T ss_dssp             HHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTS
T ss_pred             HHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCC
Confidence            9999999999999999999987445543  457788887 899999999999999998 554 45666 57889999999


Q ss_pred             cCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE--
Q 011700          285 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV--  362 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~--  362 (479)
                      ||++|+|||+|||++.+          ..+..|..||+.||.||++.....++..+|++  .+++.+++++|+++.++  
T Consensus       342 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~~~~a~vG~~e~~a~~  409 (523)
T 1mo9_A          342 QTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKISYTPKNYPDF--LHTHYEVSFLGMGEEEARA  409 (523)
T ss_dssp             BCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEE--EESSSEEEEEECCHHHHHH
T ss_pred             ccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--EECCCceEEEeCCHHHHHh
Confidence            99999999999999765          34678999999999999986533456778864  45788899999886532  


Q ss_pred             -----EE----Ecc-----------------------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCC
Q 011700          363 -----VH----YGN-----------------------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQP  407 (479)
Q Consensus       363 -----~~----~~~-----------------------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~  407 (479)
                           ..    +.+                       .....|.++.+  ++++|+|+|++|+++.|+ +.++.||+.++
T Consensus       410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~  489 (523)
T 1mo9_A          410 AGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL  489 (523)
T ss_dssp             TTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence                 11    111                       11134666655  589999999999998887 66899999999


Q ss_pred             CcCcHHHH--hhcCCCcccccCCC
Q 011700          408 VVEDLAEL--ETQGLGFALAVSQK  429 (479)
Q Consensus       408 ~~~dl~~~--~~~~~~~a~~~~~~  429 (479)
                      |++||.++  +..||++++.+.+.
T Consensus       490 t~~~l~~~~~~~~~Pt~~e~~~~~  513 (523)
T 1mo9_A          490 TVDELGDMDELFLNPTHFIQLSRL  513 (523)
T ss_dssp             BHHHHHTSCCCSSCSCCHHHHHHH
T ss_pred             CHHHHHhCCcceECCCHHHHHHHH
Confidence            99999998  88888888876543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.1e-49  Score=409.13  Aligned_cols=396  Identities=19%  Similarity=0.207  Sum_probs=293.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCC--CCCCcc-cccccC---------CCCCCCCCCcccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAP--YERPAL-SKGYLL---------PEAPARLPSFHTC   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~---------~~~~~~~~~~~~~   68 (479)
                      ++||||||||+||++||.+|+++   |.+   |+|||+++...  .+..+. ++.++.         ......++.+...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD   78 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence            38999999999999999999998   775   99999986200  000000 110000         0000011100000


Q ss_pred             cCCc--------------ccCCCHhHHHHcCcEEEeCceEEEEECC----CcE--EEeCCCc--EEEeceEEeecCCCcc
Q 011700           69 VGAN--------------EERLTPKWYNEHGIELVLGTRVKSADVR----RKT--LVTATGE--TISYKILIIATGARAL  126 (479)
Q Consensus        69 ~~~~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~----~~~--v~~~~g~--~~~~d~lviAtG~~~~  126 (479)
                      ...+              ......+++++.+++++.++ +..++..    ++.  +...+++  ++.||+||+|||++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~  157 (499)
T 1xdi_A           79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR-GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR  157 (499)
T ss_dssp             -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence            0000              00112455677899999984 7777762    233  4445665  7999999999999999


Q ss_pred             cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH
Q 011700          127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI  206 (479)
Q Consensus       127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~  206 (479)
                      .|++   +|.+..++++..+..+.       .. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++
T Consensus       158 ~p~i---~g~~~~~v~~~~~~~~~-------~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~  225 (499)
T 1xdi_A          158 ILPS---AQPDGERILTWRQLYDL-------DA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA  225 (499)
T ss_dssp             CCGG---GCCCSSSEEEGGGGGGC-------SS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred             CCCC---CCCCcCcEEehhHhhhh-------hc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence            8887   55554556665544321       11 4799999999999999999999999999999999999987 89999


Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTG  282 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~  282 (479)
                      .+.+.+.++++||+++++++|++++.+ ++.+ .+.+.+|+++++|.|++|+|++|++++  ++ .++.. ++|+|.||+
T Consensus       226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~  303 (499)
T 1xdi_A          226 ALVLEESFAERGVRLFKNARAASVTRT-GAGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR  303 (499)
T ss_dssp             HHHHHHHHHHTTCEEETTCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence            999999999999999999999999873 3333 577788889999999999999999986  33 35666 458899999


Q ss_pred             cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700          283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGE  361 (479)
Q Consensus       283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  361 (479)
                      +|||++|+|||+|||+..+          ..+..|..||+.||+||++.. ...+|..+|+  ..+++.+++++|+++.+
T Consensus       304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~  371 (499)
T 1xdi_A          304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGVSPIRLRTVAA--TVFTRPEIAAVGVPQSV  371 (499)
T ss_dssp             SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEE--EECSSSEEEEEESCHHH
T ss_pred             CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCCccCCCCCCcE--EEEecCCceEeCCCHHH
Confidence            9999999999999999864          346789999999999999862 2345556775  55778899999998754


Q ss_pred             EE------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700          362 VV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL  420 (479)
Q Consensus       362 ~~------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~  420 (479)
                      +.      ..+            ..+...|.++++  ++|+|+|+|++|+++.|+ +.++.||+.++|++||.+++..||
T Consensus       372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P  451 (499)
T 1xdi_A          372 IDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYP  451 (499)
T ss_dssp             HHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSS
T ss_pred             HHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCC
Confidence            21      100            011245766665  379999999999999887 668999999999999999998999


Q ss_pred             CcccccCCC
Q 011700          421 GFALAVSQK  429 (479)
Q Consensus       421 ~~a~~~~~~  429 (479)
                      ++++.+.+.
T Consensus       452 t~~e~~~~~  460 (499)
T 1xdi_A          452 SLSGSITEA  460 (499)
T ss_dssp             STHHHHHHH
T ss_pred             CchHHHHHH
Confidence            988865443

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.7e-49  Score=406.70  Aligned_cols=398  Identities=18%  Similarity=0.190  Sum_probs=291.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccC-------------CCCCCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLL-------------PEAPARLP   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~-------------~~~~~~~~   63 (479)
                      |++++||+||||||||++||..|+++|++   |+|||+++....   ...++ ++.++.             .....+++
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~   77 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFS   77 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHH
Confidence            77789999999999999999999999987   999997653210   00010 000000             00000000


Q ss_pred             CcccccCCc--cc--CCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcE--EEeceEEeecCCCcccccccCCCCCC
Q 011700           64 SFHTCVGAN--EE--RLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGET--ISYKILIIATGARALKLEEFGLSGSD  137 (479)
Q Consensus        64 ~~~~~~~~~--~~--~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~--~~~d~lviAtG~~~~~~~~~g~~g~~  137 (479)
                      .+.......  ..  .....++++.+++++.+ ++..++.+...+...++++  +.||+||||||++|+.|++   +|.+
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i---~G~~  153 (466)
T 3l8k_A           78 TVQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRL---PGVE  153 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCC---TTGG
T ss_pred             HHHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCC---CCcc
Confidence            000000000  00  11122334568999988 7888998777787888888  9999999999999998887   5544


Q ss_pred             CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700          138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK  217 (479)
Q Consensus       138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  217 (479)
                        +++   +..++..+.+.+.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++..+++++.+.+.+.++  
T Consensus       154 --~~~---t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~--  225 (466)
T 3l8k_A          154 --YCL---TSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK--  225 (466)
T ss_dssp             --GSB---CHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC--
T ss_pred             --ceE---eHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE--
Confidence              232   33333322112222 4789999999999999999999999999999999999987449999999988876  


Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecCCCCChhh--hhccccc-ccCcEEEcCcccCCCCC
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSL--FEGQLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~~~l--~~~~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                       |++++++.+++++.++++.+ .+.+.  +|+  ++++|.|++|+|++|++.+  .+.++.. ++| |.||+++||++|+
T Consensus       226 -v~i~~~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~  302 (466)
T 3l8k_A          226 -LNIKFNSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPN  302 (466)
T ss_dssp             -CCEECSCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTT
T ss_pred             -EEEEECCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCC
Confidence             99999999999987432444 46676  665  7999999999999999983  3446666 466 9999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC--CC-CCCCCCCCeEEEeecCcceEeecCCCceEE----
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP--DK-TDKFDYLPFFYSRVFTLSWQFYGDNVGEVV----  363 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~--~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~----  363 (479)
                      |||+|||++.+          .++..|..||+.||.||++.  .. ..++..+|+  ..+++.+++++|+++.++.    
T Consensus       303 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~~a~vG~te~~a~~~g~  370 (466)
T 3l8k_A          303 VFATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPSLSYVGILPSKARKMGI  370 (466)
T ss_dssp             EEECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSCEEEEECCHHHHHHHTC
T ss_pred             EEEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCCeEEecCCHHHHHhCCC
Confidence            99999999864          45788999999999999976  32 245666774  5567888999999876531    


Q ss_pred             -----EE--cc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          364 -----HY--GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       364 -----~~--~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                           .+  .+       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~  450 (466)
T 3l8k_A          371 EIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEII  450 (466)
T ss_dssp             CEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHH
T ss_pred             CEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHH
Confidence                 11  01       01245666554  579999999999999998 568999999999999999998888888766


Q ss_pred             CC
Q 011700          427 SQ  428 (479)
Q Consensus       427 ~~  428 (479)
                      .+
T Consensus       451 ~~  452 (466)
T 3l8k_A          451 SY  452 (466)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=3.5e-49  Score=407.24  Aligned_cols=397  Identities=20%  Similarity=0.226  Sum_probs=292.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-ccccc-----------CCC--CC-CCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYL-----------LPE--AP-ARLP   63 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~-----------~~~--~~-~~~~   63 (479)
                      |++++||+|||||+||++||.+|+++|++   |+|||++....  .+..+. ++.++           .+.  .. ...+
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP   77 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence            78889999999999999999999998876   99999984210  000000 00000           000  00 0000


Q ss_pred             C--cccccCC------ccc-CCCHhHHHHc-CcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccccc
Q 011700           64 S--FHTCVGA------NEE-RLTPKWYNEH-GIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEF  131 (479)
Q Consensus        64 ~--~~~~~~~------~~~-~~~~~~~~~~-gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~  131 (479)
                      .  +......      ... ....+++++. +++++.+ .+..++....++.+.+|  ++++||+||||||++|+.|++ 
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i-  155 (467)
T 1zk7_A           78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPI-  155 (467)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCC-
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCC-
Confidence            0  0000000      000 0123455666 9999988 57788877666777777  689999999999999998887 


Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE  211 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~  211 (479)
                        +|.+...++   +..++..    +.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++  +++++.+.+.
T Consensus       156 --~G~~~~~~~---~~~~~~~----~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~  223 (467)
T 1zk7_A          156 --PGLKESPYW---TSTEALA----SDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVT  223 (467)
T ss_dssp             --TTTTTSCCB---CHHHHHH----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHH
T ss_pred             --CCCCcCcee---cHHHHhc----ccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHH
Confidence              555433333   2333222    122 479999999999999999999999999999999999888  7999999999


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCC
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSS  287 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~  287 (479)
                      +.++++||+++++++|++++.+ ++ ...+.+. +.++++|.|++|+|++|+++++   ..++.. .+|+|.||+++||+
T Consensus       224 ~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~  300 (467)
T 1zk7_A          224 AAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS  300 (467)
T ss_dssp             HHHHHTTCEEETTCCEEEEEEE-TT-EEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred             HHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccC
Confidence            9999999999999999999863 33 3346665 4689999999999999998742   335665 46779999999999


Q ss_pred             CCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE-----
Q 011700          288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV-----  362 (479)
Q Consensus       288 ~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~-----  362 (479)
                      .|+|||+|||+..+.          .+..|..||+.+|.||++.....++..+|+  ..+++.+++.+|+++.++     
T Consensus       301 ~~~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~~~~a~~~g~  368 (467)
T 1zk7_A          301 NPNIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEAHHDGI  368 (467)
T ss_dssp             STTEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEE--EECSSSEEEEEECCHHHHHHTTC
T ss_pred             CCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCE--EEecCCceEEEecCHHHHHhcCC
Confidence            999999999998653          467899999999999998643345556664  456788899999876532     


Q ss_pred             --E--EEc---------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          363 --V--HYG---------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       363 --~--~~~---------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                        .  .+.         ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.++...||++++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~  448 (467)
T 1zk7_A          369 ETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGL  448 (467)
T ss_dssp             CEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHH
T ss_pred             CeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHH
Confidence              1  110         112245666665  489999999999999887 568999999999999999999999998876


Q ss_pred             CCC
Q 011700          427 SQK  429 (479)
Q Consensus       427 ~~~  429 (479)
                      .+.
T Consensus       449 ~~~  451 (467)
T 1zk7_A          449 KLA  451 (467)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=1e-49  Score=412.25  Aligned_cols=397  Identities=20%  Similarity=0.253  Sum_probs=292.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCcccc------cccCC-----CCCCCCCCccc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP----YERPALSK------GYLLP-----EAPARLPSFHT   67 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~----~~~~~l~~------~~~~~-----~~~~~~~~~~~   67 (479)
                      ++|||+|||||+||++||.+|+++|++   |+|||+++...    +...++..      .++..     .....+..+..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~   78 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI   78 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            469999999999999999999999987   99999986211    00000000      00000     00000000000


Q ss_pred             ccCC-----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccc
Q 011700           68 CVGA-----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        68 ~~~~-----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      ....                 ........++++.+++++.++ +..++.....+...++  +++.||+||||||++|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~  157 (476)
T 3lad_A           79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH-GKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (476)
T ss_dssp             ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESE-EEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence            0000                 000011234556799999984 4456666666666666  5799999999999999877


Q ss_pred             cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700          129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS  208 (479)
Q Consensus       129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  208 (479)
                      +.   .+.+...+++..+..+       +. ..+++++|||+|++|+|+|..|.+.|.+||++++.+++++. +++++.+
T Consensus       158 ~~---~~~~~~~v~~~~~~~~-------~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~  225 (476)
T 3lad_A          158 PP---APVDQDVIVDSTGALD-------FQ-NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAK  225 (476)
T ss_dssp             TT---SCCCSSSEEEHHHHTS-------CS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred             CC---CCCCcccEEechhhhc-------cc-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHH
Confidence            65   3334455655432211       11 25799999999999999999999999999999999999985 8999999


Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEc
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVT  281 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd  281 (479)
                      .+.+.+++.||++++++++++++.++++ + .+.+.++   +++++|.|++|+|++|+++++   ..++.. ++|+|.||
T Consensus       226 ~l~~~l~~~Gv~v~~~~~v~~i~~~~~~-~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd  303 (476)
T 3lad_A          226 EAQKILTKQGLKILLGARVTGTEVKNKQ-V-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD  303 (476)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSSC-E-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEEcCCE-E-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC
Confidence            9999999999999999999999874333 3 3555544   679999999999999999743   335665 57889999


Q ss_pred             CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCce
Q 011700          282 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE  361 (479)
Q Consensus       282 ~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~  361 (479)
                      +++||++|+|||+|||++.+          ..+..|..||+.||+||++.....++..+|+  ..+++.+++.+|+++.+
T Consensus       304 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGlte~~  371 (476)
T 3lad_A          304 DYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKAQMNYDLIPA--VIYTHPEIAGVGKTEQA  371 (476)
T ss_dssp             TTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--EECSSSEEEEEECCHHH
T ss_pred             CCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCCCCCE--EEECcCCEEEeeCCHHH
Confidence            99999999999999999654          3577899999999999998765456777886  45778889999998764


Q ss_pred             EE------EEc-----cC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCC
Q 011700          362 VV------HYG-----NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGL  420 (479)
Q Consensus       362 ~~------~~~-----~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~  420 (479)
                      +.      ..+     ..       ....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||
T Consensus       372 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hP  451 (476)
T 3lad_A          372 LKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHP  451 (476)
T ss_dssp             HHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSS
T ss_pred             HHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCC
Confidence            31      111     00       1235666554  689999999999999998 568999999999999999999999


Q ss_pred             CcccccCCC
Q 011700          421 GFALAVSQK  429 (479)
Q Consensus       421 ~~a~~~~~~  429 (479)
                      ++++.+.+.
T Consensus       452 t~~e~~~~~  460 (476)
T 3lad_A          452 ALSEALHEA  460 (476)
T ss_dssp             CSHHHHHHH
T ss_pred             ChHHHHHHH
Confidence            998876554

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=2.1e-48  Score=404.24  Aligned_cols=402  Identities=15%  Similarity=0.184  Sum_probs=282.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-ccc----------------CCCC-CCCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYL----------------LPEA-PARLPS   64 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~----------------~~~~-~~~~~~   64 (479)
                      +||+|||||+||++||.+|++.|.+   |+|||+++...  .+..+++. .++                .... ..+++.
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~   79 (500)
T 1onf_A            3 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL   79 (500)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHH
Confidence            8999999999999999999998887   99999985210  01111110 000                0000 000000


Q ss_pred             cccccC---CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCC-------------CcEEEeceEEeecCCCcccc
Q 011700           65 FHTCVG---ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTAT-------------GETISYKILIIATGARALKL  128 (479)
Q Consensus        65 ~~~~~~---~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~-------------g~~~~~d~lviAtG~~~~~~  128 (479)
                      +.....   ......+..++++.+++++.++. ..++.  +++.+.+             ++++.||+||||||++|..|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p  156 (500)
T 1onf_A           80 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTA-SFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFP  156 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCC-CCC----------------------------CBSSEEECCCCCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEE-EEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCC
Confidence            000000   00000122345678999999853 33443  4555433             56799999999999999888


Q ss_pred             cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH
Q 011700          129 EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS  208 (479)
Q Consensus       129 ~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~  208 (479)
                      ++   +|.+  .+++.   .++..    +.  .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+
T Consensus       157 ~i---~G~~--~~~~~---~~~~~----~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~  221 (500)
T 1onf_A          157 PV---KGIE--NTISS---DEFFN----IK--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVIN  221 (500)
T ss_dssp             SC---TTGG--GCEEH---HHHTT----CC--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHH
T ss_pred             CC---CCCC--cccCH---HHHhc----cC--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhHH
Confidence            76   5542  33332   22211    12  2789999999999999999999999999999999999985 8999999


Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCCCCChh-h-hh-cccccccCcEEEcCcc
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPNTS-L-FE-GQLTLEKGGIKVTGRL  284 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~~p~~~-l-~~-~~~~~~~g~i~Vd~~l  284 (479)
                      .+.+.++++||++++++++++++.++++. ..+.+.+|++ +++|.|++|+|++|+++ + ++ .++..++|+|.||+++
T Consensus       222 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~  300 (500)
T 1onf_A          222 VLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQ  300 (500)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTC
T ss_pred             HHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCc
Confidence            99999999999999999999998743343 3577889988 99999999999999996 4 33 3555567889999999


Q ss_pred             cCCCCCeEEEeeeccccccc-----------------------cC-ceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCC
Q 011700          285 QSSNSSVYAVGDVAAFPLKL-----------------------LG-ETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDY  339 (479)
Q Consensus       285 ~t~~~~IyA~GD~~~~~~~~-----------------------~g-~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~  339 (479)
                      ||++|+|||+|||+..+...                       .+ ......++..|..||++||+||++... ..+|..
T Consensus       301 ~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~  380 (500)
T 1onf_A          301 RTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKL  380 (500)
T ss_dssp             BCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSS
T ss_pred             ccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCC
Confidence            99999999999999532100                       00 002346789999999999999997542 245666


Q ss_pred             CCeEEEeecCcceEeecCCCceEEE--------E----------------ccCCCCceEEEEc--cCCEEEEEEEeCCCH
Q 011700          340 LPFFYSRVFTLSWQFYGDNVGEVVH--------Y----------------GNFSGTTFGAYWV--NKGRLVGSFLEGGTK  393 (479)
Q Consensus       340 ~p~~~~~~~~~~~~~~G~~~~~~~~--------~----------------~~~~~~~~~~~~~--~~~~i~G~~~~g~~~  393 (479)
                      +|+  ..+++.+++++|+++.++..        .                .......|.++.+  ++++|+|+|++|+++
T Consensus       381 ~p~--~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a  458 (500)
T 1onf_A          381 IPT--VIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNA  458 (500)
T ss_dssp             CCE--EECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTTH
T ss_pred             CCe--EEEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence            775  45678889999988543311        1                0111245666655  689999999999999


Q ss_pred             HHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCCC
Q 011700          394 EEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQKP  430 (479)
Q Consensus       394 ~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~  430 (479)
                      .|+ +.++.||+.++|++||.+++..||+++|.+.+..
T Consensus       459 ~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~  496 (500)
T 1onf_A          459 DEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ  496 (500)
T ss_dssp             HHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence            887 6689999999999999999999999998877664

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=2e-48  Score=403.97  Aligned_cols=399  Identities=19%  Similarity=0.255  Sum_probs=285.3

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCCC-----CCCCCCcccccCC-
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPEA-----PARLPSFHTCVGA-   71 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~~-----~~~~~~~~~~~~~-   71 (479)
                      |.++||+||||||||++||..|+++|++   |+|||+++....   +..+. ++.++....     ...++.+...... 
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   99 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP   99 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC
Confidence            4469999999999999999999999987   999998753210   00000 000000000     0000000000000 


Q ss_pred             ----------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700           72 ----------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        72 ----------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                                      ........++++.+++++.+. +..++.....+...+|  +++.||+||||||++|.  +++|+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ipg~  176 (491)
T 3urh_A          100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT-GKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGV  176 (491)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--CBTTB
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCCCc
Confidence                            000112334567899999984 4445554455555566  57999999999999863  33222


Q ss_pred             CC-CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHH
Q 011700          134 SG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE  212 (479)
Q Consensus       134 ~g-~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~  212 (479)
                      +. .+...+++   ..+...    +. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+
T Consensus       177 ~~~~~~~~~~~---~~~~~~----~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~  247 (491)
T 3urh_A          177 EVAFDEKTIVS---STGALA----LE-KVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQR  247 (491)
T ss_dssp             CCCCCSSSEEC---HHHHTS----CS-SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHH
T ss_pred             ccccCCeeEEe---hhHhhh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHH
Confidence            21 12223332   222211    11 25799999999999999999999999999999999999986 89999999999


Q ss_pred             HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCc
Q 011700          213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGR  283 (479)
Q Consensus       213 ~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~  283 (479)
                      .+++.||++++++++.+++.++++ + .+.+.+   |  +++++|.|++|+|++|+++++   ..++.. ++|+|.||++
T Consensus       248 ~l~~~gV~v~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~  325 (491)
T 3urh_A          248 MLTKQGIDFKLGAKVTGAVKSGDG-A-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH  325 (491)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTE-E-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT
T ss_pred             HHHhCCCEEEECCeEEEEEEeCCE-E-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC
Confidence            999999999999999999874333 2 344442   4  589999999999999999853   345666 5788999999


Q ss_pred             ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE
Q 011700          284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV  363 (479)
Q Consensus       284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~  363 (479)
                      +||++|+|||+|||++.+          ..+..|..||+.||++|++.....++..+|+  ..+++.+++++|+++.++.
T Consensus       326 ~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~  393 (491)
T 3urh_A          326 FQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPEVASVGKTEEELK  393 (491)
T ss_dssp             CBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSCEEEEECCHHHHH
T ss_pred             CCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCCeEEEeCCHHHHH
Confidence            999999999999999755          4578899999999999998765456777886  4477889999999876531


Q ss_pred             E------Ec-----c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCc
Q 011700          364 H------YG-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGF  422 (479)
Q Consensus       364 ~------~~-----~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~  422 (479)
                      .      .+     .       .....|.++.+  ++++|||+|++|+++.|+ +.++.||+.++|++||.+++..||++
T Consensus       394 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~  473 (491)
T 3urh_A          394 AAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTM  473 (491)
T ss_dssp             HTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCT
T ss_pred             hCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCCh
Confidence            1      11     0       01235666554  589999999999999998 56899999999999999999999999


Q ss_pred             ccccCCC
Q 011700          423 ALAVSQK  429 (479)
Q Consensus       423 a~~~~~~  429 (479)
                      ++.+.+.
T Consensus       474 ~e~~~~~  480 (491)
T 3urh_A          474 SEAVKEA  480 (491)
T ss_dssp             THHHHHH
T ss_pred             HHHHHHH
Confidence            8876543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=1.9e-48  Score=401.43  Aligned_cols=392  Identities=20%  Similarity=0.247  Sum_probs=286.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccC----------CCCCCCCC---
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLL----------PEAPARLP---   63 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~----------~~~~~~~~---   63 (479)
                      +++||+||||||||+++|..|+++|++   |+|||++..   ...++      ++.++.          ......++   
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~---gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~   75 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPKYW---GGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEV   75 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCT---THHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCC---CCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            358999999999999999999999887   999999832   11110      000000          00000000   


Q ss_pred             --CcccccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCcccccccCC
Q 011700           64 --SFHTCVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        64 --~~~~~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                        .+.....      ......+.+++++.+++++.++.+. ++.+...+.+.+|  ++++||+||+|||++|+.|++   
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~---  151 (464)
T 2a8x_A           76 TFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPG---  151 (464)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTT---
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---
Confidence              0000000      0000012345667899999886544 4443344555667  689999999999999988876   


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      +|.+.. ++   +..++..+    .. .+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+.+.
T Consensus       152 ~g~~~~-~~---~~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~  221 (464)
T 2a8x_A          152 TSLSAN-VV---TYEEQILS----RE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQ  221 (464)
T ss_dssp             CCCBTT-EE---CHHHHHTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred             CCCCce-EE---ecHHHhhc----cc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence            444322 32   33333221    12 4799999999999999999999999999999999999985 899999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQS  286 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t  286 (479)
                      ++++||++++++++++++.+++ .+ .+.+. +|  +++++|.|++|+|++|++++  ++ .++.. ++|+|.||+++||
T Consensus       222 l~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t  299 (464)
T 2a8x_A          222 FKKLGVTILTATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT  299 (464)
T ss_dssp             HHHHTCEEECSCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBC
T ss_pred             HHHcCCEEEeCcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCcc
Confidence            9999999999999999987333 33 35554 56  67999999999999999986  33 35666 4688999999999


Q ss_pred             CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC-CCCC-CCCCCCCeEEEeecCcceEeecCCCceEE-
Q 011700          287 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVV-  363 (479)
Q Consensus       287 ~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~-~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~-  363 (479)
                      +.|+|||+|||+..+          ..+..|..||+.||.||++ .... .+|..+|+  ..+++.+++++|+++.++. 
T Consensus       300 ~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~  367 (464)
T 2a8x_A          300 NVGHIYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAETLTLGDHRMLPR--ATFCQPNVASFGLTEQQARN  367 (464)
T ss_dssp             SSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCE--EECSSSEEEEEECCHHHHHH
T ss_pred             CCCCEEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCE--EEECCCCeEEEcCCHHHHHh
Confidence            999999999999854          3567899999999999998 4433 34556675  5678889999999865431 


Q ss_pred             -----EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 011700          364 -----HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFA  423 (479)
Q Consensus       364 -----~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a  423 (479)
                           ..+            ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+++
T Consensus       368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~  447 (464)
T 2a8x_A          368 EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMS  447 (464)
T ss_dssp             TTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTT
T ss_pred             cCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChH
Confidence                 110            011245777666  589999999999999886 668999999999999999988888888


Q ss_pred             cccCC
Q 011700          424 LAVSQ  428 (479)
Q Consensus       424 ~~~~~  428 (479)
                      +.+.+
T Consensus       448 e~~~~  452 (464)
T 2a8x_A          448 EALQE  452 (464)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=1.4e-48  Score=402.12  Aligned_cols=392  Identities=21%  Similarity=0.282  Sum_probs=287.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCCCC---------CCCC---CCccc-
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLPEA---------PARL---PSFHT-   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~~~---------~~~~---~~~~~-   67 (479)
                      ++||+|||||+||++||.+|+++|.+   |+|||+++...  .+..++ ++.++....         ...+   +.+.. 
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   82 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK   82 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence            58999999999999999999999886   99999986210  001111 110000000         0000   00000 


Q ss_pred             -ccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCC
Q 011700           68 -CVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAEN  140 (479)
Q Consensus        68 -~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~  140 (479)
                       ...      .........++++.+++++.++.+. ++  .+++.+. +++++||+||||||++|+.|+  ++++ + ..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~--gi~~-~-~~  154 (464)
T 2eq6_A           83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG--PKEVEVG-GERYGAKSLILATGSEPLELK--GFPF-G-ED  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE--TTEEEET-TEEEEEEEEEECCCEEECCBT--TBCC-S-SS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCC--CCCC-C-Cc
Confidence             000      0000012345667899999986543 55  4677776 678999999999999998876  3355 2 23


Q ss_pred             eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcE
Q 011700          141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK  220 (479)
Q Consensus       141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~  220 (479)
                      ++   +..++..    +....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++++||+
T Consensus       155 v~---~~~~~~~----l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          155 VW---DSTRALK----VEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             EE---CHHHHTC----GGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred             EE---cHHHHHh----hhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence            43   3333322    22224799999999999999999999999999999999999885 8999999999999999999


Q ss_pred             EEcCCceEEEEEcCCCcEEEEEeC-C--Cc--EEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCe
Q 011700          221 FVKGTVLSSFDVDSNGKVVAVNLR-D--GN--RLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       221 i~~~~~v~~i~~~~~g~v~~v~~~-~--g~--~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      +++++++++++.+ ++.+ .+.+. +  |+  ++++|.|++|+|++|+++++   ..++.. ++|+|.||+++||+.|+|
T Consensus       227 i~~~~~v~~i~~~-~~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I  304 (464)
T 2eq6_A          227 VRTKTKAVGYEKK-KDGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV  304 (464)
T ss_dssp             EECSEEEEEEEEE-TTEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             EEcCCEEEEEEEe-CCEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence            9999999999873 3333 46655 6  76  89999999999999999853   335665 578899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceEE------EE
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV------HY  365 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~------~~  365 (479)
                      ||+|||+..+          ..+..|..||+.||.||++.....++. +|+  ..+++.+++.+|+++.++.      ..
T Consensus       305 ya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~  371 (464)
T 2eq6_A          305 YAIGDAARPP----------LLAHKAMREGLIAAENAAGKDSAFDYQ-VPS--VVYTSPEWAGVGLTEEEAKRAGYKVKV  371 (464)
T ss_dssp             EECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCC-CCE--EECSSSEEEEEECCHHHHHHTTCCEEE
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCcccCCC-CCe--EEECCCCEEEEeCCHHHHHhcCCCEEE
Confidence            9999999764          356789999999999999865334566 775  4567888999998865321      11


Q ss_pred             c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      +            ..+...|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~  450 (464)
T 2eq6_A          372 GKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEA  450 (464)
T ss_dssp             EEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHH
T ss_pred             EEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHH
Confidence            0            011245666665  489999999999999887 668999999999999999998888888776554

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=6.2e-48  Score=397.41  Aligned_cols=396  Identities=20%  Similarity=0.252  Sum_probs=292.2

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-ccccCC----CCCCCCCCcccccC--
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-KGYLLP----EAPARLPSFHTCVG--   70 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~~~~~~----~~~~~~~~~~~~~~--   70 (479)
                      |++ ++||+|||||++|++||..|+++|++   |+|||++....  .+..+.+ +.++..    ......+.+.....  
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~   77 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES   77 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            543 68999999999999999999999987   99999953210  0000000 000000    00000000000000  


Q ss_pred             ---------------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe-CCCcEEEeceEEeecCCCcc-cccccCC
Q 011700           71 ---------------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT-ATGETISYKILIIATGARAL-KLEEFGL  133 (479)
Q Consensus        71 ---------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~-~~g~~~~~d~lviAtG~~~~-~~~~~g~  133 (479)
                                     .........++++.+++++.+ .+..+  +.+++.+ .+++++.||++|||||++|. .|++   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i---  151 (463)
T 4dna_A           78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA--GPNTVKLLASGKTVTAERIVIAVGGHPSPHDAL---  151 (463)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES--SSSEEEETTTTEEEEEEEEEECCCEEECCCTTS---
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe--eCCEEEEecCCeEEEeCEEEEecCCCcccCCCC---
Confidence                           000011233455679999988 55544  4567777 57788999999999999998 7776   


Q ss_pred             CCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHH
Q 011700          134 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY  213 (479)
Q Consensus       134 ~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~  213 (479)
                      +|.+  .+   .+..+...    +. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus       152 ~G~~--~~---~~~~~~~~----~~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~  220 (463)
T 4dna_A          152 PGHE--LC---ITSNEAFD----LP-ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAA  220 (463)
T ss_dssp             TTGG--GC---BCHHHHTT----CS-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred             CCcc--cc---ccHHHHhh----hh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence            5543  22   22222211    11 24799999999999999999999999999999999998875 899999999999


Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEE-eCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSN  288 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~-~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~  288 (479)
                      ++++||++++++.|++++.++++. ..+. +.+|+ +++|.|++|+|++|++.++   +.++.. ++|+|.||+++||++
T Consensus       221 l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~  298 (463)
T 4dna_A          221 MEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTST  298 (463)
T ss_dssp             HHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred             HHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCC
Confidence            999999999999999998844443 3677 88887 9999999999999999853   345666 578899999999999


Q ss_pred             CCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCceEE----
Q 011700          289 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVV----  363 (479)
Q Consensus       289 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~----  363 (479)
                      |+|||+|||++.+          .++..|..||+.+|+||++.... .++..+|+  ..+.+.+++.+|+++.++.    
T Consensus       299 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~~~  366 (463)
T 4dna_A          299 PGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPTSPDHDLIAT--AVFSQPEIGTVGITEEEAARKFQ  366 (463)
T ss_dssp             TTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHHHSS
T ss_pred             CCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCcccCCCCCCE--EEECCCCeEEecCCHHHHHHcCC
Confidence            9999999999854          45778999999999999986532 46667775  4456788999999876431    


Q ss_pred             --E-----EccC-------CCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCccccc
Q 011700          364 --H-----YGNF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAV  426 (479)
Q Consensus       364 --~-----~~~~-------~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~  426 (479)
                        .     +...       ....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~  446 (463)
T 4dna_A          367 EIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL  446 (463)
T ss_dssp             EEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGG
T ss_pred             CeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHH
Confidence              1     1111       1235666554  689999999999999998 568999999999999999999999999999


Q ss_pred             CCCC
Q 011700          427 SQKP  430 (479)
Q Consensus       427 ~~~~  430 (479)
                      .+..
T Consensus       447 ~~~~  450 (463)
T 4dna_A          447 VTMY  450 (463)
T ss_dssp             TCCC
T ss_pred             HHHh
Confidence            8873

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=3.1e-48  Score=400.68  Aligned_cols=395  Identities=21%  Similarity=0.243  Sum_probs=289.0

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccCCC----------CCCCCC--
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLLPE----------APARLP--   63 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~~~----------~~~~~~--   63 (479)
                      +.++||+|||||+||+++|..|++.|++   |+|||+++...  ..++      ++.++...          ....++  
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~G--G~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~   78 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALG--GTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS   78 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSC--CSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcc--ccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            4569999999999999999999999887   99999985421  1111      00000000          000000  


Q ss_pred             ----Cccccc------CCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCccccccc
Q 011700           64 ----SFHTCV------GANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARALKLEEF  131 (479)
Q Consensus        64 ----~~~~~~------~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~~~  131 (479)
                          .+....      ..........++++.+++++.++.+. ++.+...+.+.+|  ++++||+||+|||++|..|++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~-  156 (470)
T 1dxl_A           79 NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPG-  156 (470)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBTT-
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCC-
Confidence                000000      00000012345567799999997554 6665444555566  689999999999999998877 


Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE  211 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~  211 (479)
                        +|.+..++++   ..++..    +.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus       157 --~g~~~~~v~~---~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~  225 (470)
T 1dxl_A          157 --VTIDEKKIVS---STGALA----LSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQ  225 (470)
T ss_dssp             --BCCCSSSEEC---HHHHTT----CSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHH
T ss_pred             --CCCCcccEEe---HHHhhh----hhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHH
Confidence              4444344543   222221    111 4799999999999999999999999999999999999985 8999999999


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CC--cEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcC
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTG  282 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~  282 (479)
                      +.+++.||++++++++.+++.++++ + .+.+.   +|  +++++|.|++|+|++|++++  ++ .++.. ++|+|.||+
T Consensus       226 ~~l~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~  303 (470)
T 1dxl_A          226 RSLEKQGMKFKLKTKVVGVDTSGDG-V-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNE  303 (470)
T ss_dssp             HHHHHSSCCEECSEEEEEEECSSSS-E-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCT
T ss_pred             HHHHHcCCEEEeCCEEEEEEEcCCe-E-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECc
Confidence            9999999999999999999863333 2 34443   44  68999999999999999986  33 35665 468899999


Q ss_pred             cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE
Q 011700          283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV  362 (479)
Q Consensus       283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~  362 (479)
                      ++||+.|+|||+|||+..+          ..+..|..||+.||.||++.....+|..+|+  ..+++.+++++|+++.++
T Consensus       304 ~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a  371 (470)
T 1dxl_A          304 RFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKVGHVDYDKVPG--VVYTNPEVASVGKTEEQV  371 (470)
T ss_dssp             TCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSCCCCCTTSCCE--EECSSSEEEEEECCHHHH
T ss_pred             CCccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCcCCCCCCCCE--EEECCCceEEEcCCHHHH
Confidence            9999999999999999754          3567899999999999998653344555674  567889999999986533


Q ss_pred             ------EEEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCC
Q 011700          363 ------VHYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLG  421 (479)
Q Consensus       363 ------~~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~  421 (479)
                            +..+            ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||+
T Consensus       372 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt  451 (470)
T 1dxl_A          372 KETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPT  451 (470)
T ss_dssp             HHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSC
T ss_pred             HhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCC
Confidence                  1111            011245777666  489999999999999887 5689999999999999999888888


Q ss_pred             cccccCC
Q 011700          422 FALAVSQ  428 (479)
Q Consensus       422 ~a~~~~~  428 (479)
                      +++.+.+
T Consensus       452 ~~e~~~~  458 (470)
T 1dxl_A          452 MSEAIKE  458 (470)
T ss_dssp             TTHHHHH
T ss_pred             hHHHHHH
Confidence            8776644

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.2e-47  Score=394.35  Aligned_cols=393  Identities=21%  Similarity=0.254  Sum_probs=286.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCC----CCCCCCCCcccccCC---c-
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLP----EAPARLPSFHTCVGA---N-   72 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~----~~~~~~~~~~~~~~~---~-   72 (479)
                      ++||+|||||+||++||.+|++.|++   |+|||++....  .+..++ ++.++..    .....+..+......   + 
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~   79 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF   79 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence            58999999999999999999999886   99999983210  000011 1100000    000000000000000   0 


Q ss_pred             -------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecCCCcccccccCCCCCCC
Q 011700           73 -------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATGARALKLEEFGLSGSDA  138 (479)
Q Consensus        73 -------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG~~~~~~~~~g~~g~~~  138 (479)
                                   ....+.+++++.+++++.++.+ .++.+...+.+.+| ++++||+||+|||++|..|++   +|.+.
T Consensus        80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~---~g~~~  155 (455)
T 1ebd_A           80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPN---FKFSN  155 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECCBTT---BCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCC---CCccc
Confidence                         0001234556789999999654 47765556666666 689999999999999988876   44332


Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700          139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG  218 (479)
Q Consensus       139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G  218 (479)
                       .++   +..++..    +.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.++++|
T Consensus       156 -~v~---~~~~~~~----~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g  225 (455)
T 1ebd_A          156 -RIL---DSTGALN----LGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKG  225 (455)
T ss_dssp             -SEE---CHHHHHT----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTT
T ss_pred             -eEe---cHHHHhc----ccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence             233   3333322    111 4799999999999999999999999999999999999886 89999999999999999


Q ss_pred             cEEEcCCceEEEEEcCCCcEEEEEeC---CCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCe
Q 011700          219 VKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       219 V~i~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~I  291 (479)
                      |+++++++|++++.++ +.+ .+.+.   +++++++|.|++|+|++|++++  ++ .++.. ++|+|.||++|||+.|+|
T Consensus       226 v~i~~~~~v~~i~~~~-~~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I  303 (455)
T 1ebd_A          226 VEVVTNALAKGAEERE-DGV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI  303 (455)
T ss_dssp             CEEEESEEEEEEEEET-TEE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred             CEEEeCCEEEEEEEeC-CeE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence            9999999999998733 322 34443   4568999999999999999986  33 34665 468899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEE
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHY  365 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~  365 (479)
                      ||+|||+..+          ..+..|..||+.||+||.+.....+|..+|+  ..+++.+++++|+++.++      +..
T Consensus       304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG~~e~~a~~~g~~~~~  371 (455)
T 1ebd_A          304 FAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHPSAVDYVAIPA--VVFSDPECASVGYFEQQAKDEGIDVIA  371 (455)
T ss_dssp             EECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCCCCCCCSCCCE--EECSSSCEEEEECCHHHHHTTTCCEEE
T ss_pred             EEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCCccCCCCCCCE--EEECCCceEEEeCCHHHHHhcCCCEEE
Confidence            9999999754          3467899999999999998643345556674  567888999999876543      111


Q ss_pred             c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                      +            ......|.++++  ++++|+|+|++|+++.|+ +.++.||+.++|++||.+++..||++++.+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~  448 (455)
T 1ebd_A          372 AKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAM  448 (455)
T ss_dssp             EEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHH
T ss_pred             EEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHH
Confidence            1            011245767665  489999999999999887 6689999999999999999988888877654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=3.8e-48  Score=401.06  Aligned_cols=390  Identities=21%  Similarity=0.232  Sum_probs=290.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCccc-c----------------cccCCCCCCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALS-K----------------GYLLPEAPARLPS   64 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~-~----------------~~~~~~~~~~~~~   64 (479)
                      ++||+|||||+||++||.+|+++|++   |+|||++....  .+..+.+ +                .+-....   .+.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~---~~~   99 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA---DPI   99 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCC---CCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccC---CCc
Confidence            58999999999999999999999987   99999954210  0000000 0                0000000   000


Q ss_pred             cccc--------cCCcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcc-cccccCCC
Q 011700           65 FHTC--------VGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARAL-KLEEFGLS  134 (479)
Q Consensus        65 ~~~~--------~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~-~~~~~g~~  134 (479)
                      +...        ............+++.+++++.+ .+..++  .+++.+. +++++.||++|||||+.|. .|++   +
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i---~  173 (484)
T 3o0h_A          100 FNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSAI---K  173 (484)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC--C---B
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCCC---C
Confidence            0000        00000011234456779999998 566665  4567776 7788999999999999998 7776   5


Q ss_pred             CCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       135 g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      |.+  .+++..++...       . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus       174 G~~--~~~~~~~~~~~-------~-~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l  242 (484)
T 3o0h_A          174 GSD--LCLTSNEIFDL-------E-KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAM  242 (484)
T ss_dssp             TGG--GSBCTTTGGGC-------S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred             Ccc--ccccHHHHHhH-------H-hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHH
Confidence            433  23333332211       1 14799999999999999999999999999999999998886 8999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSS  290 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~  290 (479)
                      ++.||++++++.|++++.+ ++.+ .+.+.+|+++++|.|++|+|++|++.++   ..++.. ++|+|.||+++||++|+
T Consensus       243 ~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~  320 (484)
T 3o0h_A          243 VAKGISIIYEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSH  320 (484)
T ss_dssp             HHHTCEEESSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTT
T ss_pred             HHCCCEEEeCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCC
Confidence            9999999999999999874 3344 6888999999999999999999999853   345666 56889999999999999


Q ss_pred             eEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEeecCcceEeecCCCceEEEEc---
Q 011700          291 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG---  366 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~---  366 (479)
                      |||+|||++.+          ..+..|..||+.+|+||++.... .++..+|+  ..+++.+++.+|+++.++...|   
T Consensus       321 Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~  388 (484)
T 3o0h_A          321 IWAVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTSTTPDYDLITT--AVFSQPEIGTVGLSEEDALHRYKRV  388 (484)
T ss_dssp             EEECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---CCCCCTTCCE--EECCSSCEEEEECCHHHHHHHCSEE
T ss_pred             EEEEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcE--EEECCCCEEEeeCCHHHHHHcCCCE
Confidence            99999999854          45778999999999999986432 46677786  4456788999999876532111   


Q ss_pred             --------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 --------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 --------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                              .       .....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+++..||+++|.+.+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  468 (484)
T 3o0h_A          389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVT  468 (484)
T ss_dssp             EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGC
T ss_pred             EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence                    0       01245666554  689999999999999998 56899999999999999999999999999988


Q ss_pred             CC
Q 011700          429 KP  430 (479)
Q Consensus       429 ~~  430 (479)
                      ..
T Consensus       469 ~~  470 (484)
T 3o0h_A          469 MY  470 (484)
T ss_dssp             CC
T ss_pred             Hh
Confidence            73

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=6e-48  Score=399.27  Aligned_cols=400  Identities=20%  Similarity=0.238  Sum_probs=283.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCCCC----C-CCCCCccccc-C
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLPEA----P-ARLPSFHTCV-G   70 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~~~----~-~~~~~~~~~~-~   70 (479)
                      |++++||+||||||||+++|..|+++|++   |+|||+++....   +..++ ++.++....    . ...+.+.... .
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~   78 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG   78 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            55679999999999999999999999886   999999643210   00000 000000000    0 0000000000 0


Q ss_pred             C---c--------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cE------EEeceEEeecCCCc
Q 011700           71 A---N--------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ET------ISYKILIIATGARA  125 (479)
Q Consensus        71 ~---~--------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~------~~~d~lviAtG~~~  125 (479)
                      .   .              ......+++++.+++++.++.+. .+....++.+.+|  ++      ++||+||+|||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            0   0              00012345667899999996654 2333334444555  56      99999999999988


Q ss_pred             ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700          126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  205 (479)
                      +.  +   ||.+..+ ..+.+..++..+    .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. ++++
T Consensus       158 ~~--~---~g~~~~~-~~v~~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~  225 (478)
T 1v59_A          158 TP--F---PGIEIDE-EKIVSSTGALSL----KE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGE  225 (478)
T ss_dssp             CC--C---TTCCCCS-SSEECHHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHH
T ss_pred             CC--C---CCCCCCC-ceEEcHHHHHhh----hc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cCHH
Confidence            43  2   3322222 112233333222    12 4799999999999999999999999999999999999984 8999


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-----CCcEEeccEEEEecCCCCChh--hhh-ccccc-ccC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKG  276 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g  276 (479)
                      +.+.+.+.+++.||++++++++++++..+++....+.+.     +++++++|.|++|+|++|+++  +++ .++.. ++|
T Consensus       226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G  305 (478)
T 1v59_A          226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRG  305 (478)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCC
Confidence            999999999999999999999999986213333455554     356899999999999999997  444 35666 478


Q ss_pred             cEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeec
Q 011700          277 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYG  356 (479)
Q Consensus       277 ~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G  356 (479)
                      +|.||++|||+.|+|||+|||+..+          ..+..|..||+.||+||++.....+|..+|+  ..+++.+++++|
T Consensus       306 ~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~vG  373 (478)
T 1v59_A          306 RLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHGHVNYNNIPS--VMYSHPEVAWVG  373 (478)
T ss_dssp             CBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCTTSCCE--EECSSSEEEEEE
T ss_pred             CEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCE--EEEcCCcEEEEE
Confidence            8999999999999999999999864          3467899999999999997554346777885  446778899999


Q ss_pred             CCCceEE------EEc------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH
Q 011700          357 DNVGEVV------HYG------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL  415 (479)
Q Consensus       357 ~~~~~~~------~~~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~  415 (479)
                      +++.++.      ...            ......|.+++.  ++++|+|+|++|+++.|+ +.++.+|+.++|++|+.++
T Consensus       374 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~  453 (478)
T 1v59_A          374 KTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARV  453 (478)
T ss_dssp             CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred             CCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhC
Confidence            9865431      110            011234555544  489999999999998886 6689999999999999999


Q ss_pred             hhcCCCcccccCC
Q 011700          416 ETQGLGFALAVSQ  428 (479)
Q Consensus       416 ~~~~~~~a~~~~~  428 (479)
                      +..||++++.+.+
T Consensus       454 ~~~~Pt~~e~~~~  466 (478)
T 1v59_A          454 CHAHPTLSEAFKE  466 (478)
T ss_dssp             CCCTTCTTHHHHH
T ss_pred             CCCCCCHHHHHHH
Confidence            8888888776543

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=1.3e-47  Score=407.11  Aligned_cols=415  Identities=17%  Similarity=0.198  Sum_probs=290.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccc----------ccCC------------CCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKG----------YLLP------------EAP   59 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~----------~~~~------------~~~   59 (479)
                      .++||+||||||||++||.+|+++|++   |+|||+....+..... +...          .+..            ...
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g  182 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG  182 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence            358999999999999999999999987   9999974211111000 0000          0000            000


Q ss_pred             CCCCCcccccC-CcccC-----------CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecCCCc
Q 011700           60 ARLPSFHTCVG-ANEER-----------LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATGARA  125 (479)
Q Consensus        60 ~~~~~~~~~~~-~~~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~  125 (479)
                      ...+....... .....           .....++..+++++.+ ....++.....+...+|  +++.||+||||||++|
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p  261 (598)
T 2x8g_A          183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGERP  261 (598)
T ss_dssp             CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEE
T ss_pred             ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCC
Confidence            00000000000 00000           0112245678999877 55666665444444556  4799999999999999


Q ss_pred             ccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHH
Q 011700          126 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       126 ~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~  205 (479)
                      +.|++   ||.+. ...+.   .++.   . +. ..+++++|||+|++|+|+|..|+++|.+||++++. .+++. ++++
T Consensus       262 ~~p~i---~G~~~-~~~~~---~~~~---~-~~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~  327 (598)
T 2x8g_A          262 KYPEI---PGAVE-YGITS---DDLF---S-LP-YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-FDQQ  327 (598)
T ss_dssp             CCCSS---TTHHH-HCEEH---HHHT---T-CS-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHH
T ss_pred             CCCCC---CCccc-ceEcH---HHHh---h-Cc-cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-CCHH
Confidence            88876   55321 12221   1111   1 11 24789999999999999999999999999999988 66664 8999


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEc-----CC---CcE-EEEEeCCCcEEe--ccEEEEecCCCCChhhh---hccc
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVD-----SN---GKV-VAVNLRDGNRLP--TDMVVVGIGIRPNTSLF---EGQL  271 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~-----~~---g~v-~~v~~~~g~~i~--~D~Vi~a~G~~p~~~l~---~~~~  271 (479)
                      +.+.+.+.++++||++++++.+.+++..     ++   +.+ ..+.+.+|++++  +|.|++|+|++|+++++   ..++
T Consensus       328 ~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl  407 (598)
T 2x8g_A          328 MAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV  407 (598)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCC
T ss_pred             HHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCc
Confidence            9999999999999999999988888642     12   333 223456777655  99999999999999864   2346


Q ss_pred             cc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEeecC
Q 011700          272 TL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT  349 (479)
Q Consensus       272 ~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~p~~~~~~~~  349 (479)
                      .. ++|+|.||+++||++|+|||+|||+....         ..+..|..||+.||.||++... ..+|..+|+  ..+++
T Consensus       408 ~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~--~~~~~  476 (598)
T 2x8g_A          408 KLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATELTDYSNVAT--TVFTP  476 (598)
T ss_dssp             CBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCE--EECSS
T ss_pred             eECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCcccCCCCCcE--EEECC
Confidence            65 56889999999999999999999964321         4577899999999999997543 245666775  45678


Q ss_pred             cceEeecCCCceEE--------EEc-------------cCCCCceEEEEc---cCCEEEEEEEeCCCHHHH-HHHHHHHH
Q 011700          350 LSWQFYGDNVGEVV--------HYG-------------NFSGTTFGAYWV---NKGRLVGSFLEGGTKEEY-EAIAKATR  404 (479)
Q Consensus       350 ~~~~~~G~~~~~~~--------~~~-------------~~~~~~~~~~~~---~~~~i~G~~~~g~~~~e~-~~~~~~i~  404 (479)
                      ++++++|+++.++.        ...             +.....|.++.+   ++++|+|+|++|+++.|+ +.++.||+
T Consensus       477 ~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~  556 (598)
T 2x8g_A          477 LEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIK  556 (598)
T ss_dssp             SCEEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHH
T ss_pred             CceEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence            88999998764431        110             011245666654   389999999999999997 56899999


Q ss_pred             cCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700          405 LQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL  446 (479)
Q Consensus       405 ~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
                      .++|++||.+++..||++++.+.+...++.++.+.++.+||+
T Consensus       557 ~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~~~~~~~~  598 (598)
T 2x8g_A          557 MGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIVSGCCG  598 (598)
T ss_dssp             TTCBHHHHHHSCCCSSCSGGGGGSCCCBSTTCCCCCC-----
T ss_pred             cCCCHHHHhhccccCCCHHHHHHHHHHhhhcccchhhcccCC
Confidence            999999999999999999999999877677777888888985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=1.2e-48  Score=405.29  Aligned_cols=393  Identities=15%  Similarity=0.094  Sum_probs=283.5

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCccc------ccccCC----CCCCCCCCccccc
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALS------KGYLLP----EAPARLPSFHTCV   69 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~------~~~~~~----~~~~~~~~~~~~~   69 (479)
                      |++ +|||+||||||||++||.+|+++|++   |+|||+++.   ...++.      +.++..    ......+.+....
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~---GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   77 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAY---GTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV   77 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCS---SCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC---CCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC
Confidence            443 48999999999999999999999987   999999752   222211      100000    0000111111100


Q ss_pred             CC------cccCCC-----------HhHHHH-cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccccc
Q 011700           70 GA------NEERLT-----------PKWYNE-HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEF  131 (479)
Q Consensus        70 ~~------~~~~~~-----------~~~~~~-~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~  131 (479)
                      ..      ......           ...+.. .+++++.+.. ...  +.+++.+.+++++.||+||||||++|..|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a-~~~--~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~  154 (492)
T 3ic9_A           78 DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFA-KFL--DEHTLQVDDHSQVIAKRIVIATGSRPNYPEFL  154 (492)
T ss_dssp             SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCE-EEE--ETTEEEETTTEEEEEEEEEECCCEECCCCHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEE-EEe--cCCEEEEcCCcEEEeCEEEEccCCCCcCCCCC
Confidence            00      000000           011112 2455666632 222  35678887888999999999999999988763


Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE  211 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~  211 (479)
                         +...+++++..+   ...    +. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.
T Consensus       155 ---~~~~~~v~t~~~---~~~----~~-~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~  222 (492)
T 3ic9_A          155 ---AAAGSRLLTNDN---LFE----LN-DLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAE  222 (492)
T ss_dssp             ---HTTGGGEECHHH---HTT----CS-SCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHH
T ss_pred             ---CccCCcEEcHHH---Hhh----hh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHH
Confidence               223344543322   211    11 24799999999999999999999999999999999999875 8999999999


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhh---hccccc-ccCcEEEc-C
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVT-G  282 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd-~  282 (479)
                      +.+++. |++++++.+++++.++ +.+ .+.+.  +|  +++++|.|++|+|++|+++++   ..++.. ++|+|.|| +
T Consensus       223 ~~l~~~-V~i~~~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~  299 (492)
T 3ic9_A          223 KTFNEE-FYFDAKARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDEL  299 (492)
T ss_dssp             HHHHTT-SEEETTCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTT
T ss_pred             HHHhhC-cEEEECCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcc
Confidence            999988 9999999999998743 333 35553  67  689999999999999999863   235666 57889999 9


Q ss_pred             cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEeecCcceEeecCCCc
Q 011700          283 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNVG  360 (479)
Q Consensus       283 ~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~~  360 (479)
                      ++||+.|+|||+|||+..+          ..+..|..||+.||.||++....  .++..+|+  ..+++.+++++|+++.
T Consensus       300 ~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~  367 (492)
T 3ic9_A          300 TLQTSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS--VVFTEPQVASVGLSLR  367 (492)
T ss_dssp             TCBCSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE--EECSSSEEEEEESCHH
T ss_pred             cccCCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE--EEECCCCeEEecCCHH
Confidence            9999999999999999865          45778999999999999873222  34445553  5566889999999876


Q ss_pred             eEEEE-----------c-----c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHH
Q 011700          361 EVVHY-----------G-----N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAE  414 (479)
Q Consensus       361 ~~~~~-----------~-----~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~  414 (479)
                      ++...           +     .       .....|.++.+  ++++|||+|++|++++|+ +.++.||+.++|++||.+
T Consensus       368 ~a~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~  447 (492)
T 3ic9_A          368 QIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLT  447 (492)
T ss_dssp             HHHHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTT
T ss_pred             HHHhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhh
Confidence            54321           1     0       01235666554  689999999999999998 568999999999999999


Q ss_pred             HhhcCCCcccccCCC
Q 011700          415 LETQGLGFALAVSQK  429 (479)
Q Consensus       415 ~~~~~~~~a~~~~~~  429 (479)
                      ++..||+++|.+.++
T Consensus       448 ~~~~hPt~~e~~~~a  462 (492)
T 3ic9_A          448 MPFYHPVIEEGLRTA  462 (492)
T ss_dssp             SCCCTTCTHHHHHHH
T ss_pred             CCCCCCChHHHHHHH
Confidence            999999999876543

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=1.5e-46  Score=386.30  Aligned_cols=392  Identities=20%  Similarity=0.244  Sum_probs=284.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCcc-cccccCC--------CCCCCCC--CcccccC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY---ERPAL-SKGYLLP--------EAPARLP--SFHTCVG   70 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~---~~~~l-~~~~~~~--------~~~~~~~--~~~~~~~   70 (479)
                      |||+||||||||++||.+|++.|++   |+|||+++....   +..+. ++.++..        .....++  .......
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~   78 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP   78 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence            7999999999999999999999886   999999853210   00000 1100000        0000000  0000000


Q ss_pred             C----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeC-CCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700           71 A----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTA-TGETISYKILIIATGARALKLEEFGLSGSDAE  139 (479)
Q Consensus        71 ~----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~  139 (479)
                      .          ........++++.+++++.++.+ .++  .+.+.+. +++++.||+||||||++|..|++   +|.+..
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~---~g~~~~  152 (455)
T 2yqu_A           79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FLS--ERKVLVEETGEELEARYILIATGSAPLIPPW---AQVDYE  152 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTT---BCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Eec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCC---CCCCcC
Confidence            0          00001134556779999998644 343  4455543 56789999999999999988876   444433


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCc
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGV  219 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV  219 (479)
                      ++++.   .++..    +.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus       153 ~v~~~---~~~~~----~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv  223 (455)
T 2yqu_A          153 RVVTS---TEALS----FPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGL  223 (455)
T ss_dssp             SEECH---HHHTC----CSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTC
T ss_pred             cEech---HHhhc----ccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCC
Confidence            44432   22211    111 4789999999999999999999999999999999998885 899999999999999999


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh--hh-ccccc-ccCcEEEcCcccCCCCCeEEEe
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL--FE-GQLTL-EKGGIKVTGRLQSSNSSVYAVG  295 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l--~~-~~~~~-~~g~i~Vd~~l~t~~~~IyA~G  295 (479)
                      +++++++|++++.++ +. ..+.+.+|+++++|.|++|+|++|++++  ++ .++.. ++|+|.||+++||+.|+|||+|
T Consensus       224 ~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~G  301 (455)
T 2yqu_A          224 TIRTGVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIG  301 (455)
T ss_dssp             EEECSCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECG
T ss_pred             EEEECCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEe
Confidence            999999999998733 33 3567778889999999999999999986  33 34555 4678999999999999999999


Q ss_pred             eeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEEc---
Q 011700          296 DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHYG---  366 (479)
Q Consensus       296 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~~---  366 (479)
                      ||+..+          ..+..|..||+.+|+||++.....++..+|+  ..+++.+++.+|+++.++      +..+   
T Consensus       302 D~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~--~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~  369 (455)
T 2yqu_A          302 DVVRGP----------MLAHKASEEGIAAVEHMVRGFGHVDYQAIPS--VVYTHPEIAAVGYTEEELKAQGIPYKVGKFP  369 (455)
T ss_dssp             GGSSSC----------CCHHHHHHHHHHHHHHHHHSCCCCCGGGCCE--EECSSSEEEEEECCHHHHHHHTCCEEEEEEE
T ss_pred             cCCCCc----------cCHHHHHHhHHHHHHHHcCCCccCCCCCCCE--EEEcCCceEEEECCHHHHHHcCCCEEEEEEE
Confidence            999764          4567899999999999997543334445664  567788899999876432      1111   


Q ss_pred             ---------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          367 ---------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       367 ---------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                               ......|.++.+  ++++|+|++++|+.+.|+ +.++.+|+++++++|+.++...||++++.+.+
T Consensus       370 ~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~  443 (455)
T 2yqu_A          370 YSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKE  443 (455)
T ss_dssp             GGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHH
T ss_pred             cccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHH
Confidence                     011245666665  589999999999999887 66899999999999999999888888876644

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=5.6e-46  Score=382.07  Aligned_cols=389  Identities=21%  Similarity=0.263  Sum_probs=281.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCCCCcc-cccccC---------CCCC---CCCC----C
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA--PYERPAL-SKGYLL---------PEAP---ARLP----S   64 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~--~~~~~~l-~~~~~~---------~~~~---~~~~----~   64 (479)
                      ++|++||||||||++||.+|++.|++   |+|||++...  +.+..++ ++.++.         ....   ..++    .
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR   81 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCCc
Confidence            58999999999999999999999886   9999995421  0000111 111100         0000   0110    0


Q ss_pred             ccc--ccC------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC
Q 011700           65 FHT--CVG------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS  136 (479)
Q Consensus        65 ~~~--~~~------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~  136 (479)
                      +..  ...      .........++++.+++++.++.+. ++  .+++.+.+ ++++||+||||||++|+.|+.  ++. 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~--~~~-  154 (458)
T 1lvl_A           82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPM--LPL-  154 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTT--BCC-
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCC--CCc-
Confidence            000  000      0000012245677899999996544 44  56787765 789999999999999987762  132 


Q ss_pred             CCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700          137 DAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS  216 (479)
Q Consensus       137 ~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~  216 (479)
                      +. .++   +..+...+    .. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus       155 ~~-~v~---~~~~~~~~----~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~  224 (458)
T 1lvl_A          155 GG-PVI---SSTEALAP----KA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKK  224 (458)
T ss_dssp             BT-TEE---CHHHHTCC----SS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred             cC-cEe---cHHHHhhh----hc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHH
Confidence            21 333   33332221    11 4789999999999999999999999999999999999984 899999999999999


Q ss_pred             CCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhh--h-cccccccCcEEEcCcccCCCCCe
Q 011700          217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVTGRLQSSNSSV  291 (479)
Q Consensus       217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~--~-~~~~~~~g~i~Vd~~l~t~~~~I  291 (479)
                      +||++++++++++++.   +. ..+...+|  +++++|.|++|+|++|+++++  + .++..++++|.||++|||+.|+|
T Consensus       225 ~gv~i~~~~~v~~i~~---~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~I  300 (458)
T 1lvl_A          225 LGIALHLGHSVEGYEN---GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNV  300 (458)
T ss_dssp             HTCEEETTCEEEEEET---TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTE
T ss_pred             CCCEEEECCEEEEEEe---CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCE
Confidence            9999999999999974   22 33444456  689999999999999999853  2 34555322899999999999999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecCCCceE------EEE
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV------VHY  365 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~------~~~  365 (479)
                      ||+|||+..+          ..+..|..||+.+|.||++.....++..+|+  ..+++.+++.+|+++.++      +..
T Consensus       301 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vG~~e~~a~~~g~~~~~  368 (458)
T 1lvl_A          301 WAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKARRFEPAAIAA--VCFTDPEVVVVGKTPEQASQQGLDCIV  368 (458)
T ss_dssp             EECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCCCCCCCSCCCE--EECSSSEEEEEECCHHHHHHTTCCEEE
T ss_pred             EEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCCccCCCCCCCE--EEECCCCeEEEeCCHHHHHHcCCCEEE
Confidence            9999999864          3577899999999999998543344555664  557788899999876432      111


Q ss_pred             c------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          366 G------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       366 ~------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      +            ......|.++.+  ++++|+|+|++|+++.|+ +.++.+|+.++|++|+.+++..||++++.+.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~  446 (458)
T 1lvl_A          369 AQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQE  446 (458)
T ss_dssp             EEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred             EEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHH
Confidence            1            011245766665  689999999999998887 66899999999999999998888888876644

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=3.6e-40  Score=322.02  Aligned_cols=294  Identities=22%  Similarity=0.246  Sum_probs=210.9

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      |++ +|||+||||||||++||.+|+++|++   |+|||++..  .      +.++......++|.+....+.+.......
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~~--g------G~~~~~~~i~~~p~~~~~~~~~~~~~~~~   70 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGIP--G------GQMANTEEVENFPGFEMITGPDLSTKMFE   70 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT--T------GGGGGCSCBCCSTTCSSBCHHHHHHHHHH
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCC--C------CeeecccccCCcCCccccchHHHHHHHHH
Confidence            665 69999999999999999999999987   999998742  1      11121122223444432222222223344


Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhc
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS  159 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~  159 (479)
                      ++.+.+..+..+..+...+.....+...++++++||+||||||++|+.|+++|........+.++... +       ...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~-~-------~~~  142 (312)
T 4gcm_A           71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVC-D-------GAF  142 (312)
T ss_dssp             HHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHH-H-------GGG
T ss_pred             HHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeecc-C-------ccc
Confidence            55667788887777777777777777788899999999999999999988744332222334332211 1       111


Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      .++++++|||+|++|+|+|..|+++|.+||++++.+++++.   ..   ...+.+++.++.+.....+..+... +....
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  215 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---RI---LQDRAFKNDKIDFIWSHTLKSINEK-DGKVG  215 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---HH---HHHHHHHCTTEEEECSEEEEEEEEE-TTEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---hh---HHHHHHHhcCcceeeecceeeeecc-ccccc
Confidence            25899999999999999999999999999999999988764   11   1234567788888888777666552 22211


Q ss_pred             E---EEeC--CCcEEeccEEEEecCCCCChhhhhcc-cccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeeccc
Q 011700          240 A---VNLR--DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEH  313 (479)
Q Consensus       240 ~---v~~~--~g~~i~~D~Vi~a~G~~p~~~l~~~~-~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~  313 (479)
                      .   ....  ++..+++|.|++++|++|++.++... +..++|+|.||++||||+|+|||+|||+..+.         .+
T Consensus       216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~---------~~  286 (312)
T 4gcm_A          216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL---------RQ  286 (312)
T ss_dssp             EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC---------CS
T ss_pred             cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc---------hH
Confidence            1   1122  23579999999999999999987654 44578899999999999999999999997542         45


Q ss_pred             HHHHHHHHHHHHHHHc
Q 011700          314 VDSARKSAKHAVAAIM  329 (479)
Q Consensus       314 ~~~A~~~g~~aa~~i~  329 (479)
                      +..|..||+.||.+|.
T Consensus       287 ~~~A~~~G~~AA~~i~  302 (312)
T 4gcm_A          287 IVTATGDGSIAAQSAA  302 (312)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7789999999999985

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=5.6e-40  Score=339.84  Aligned_cols=296  Identities=19%  Similarity=0.249  Sum_probs=228.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH--
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY--   81 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   81 (479)
                      +.+|||||||+||+++|..|++.++   +|+|||+++++.| .|.++.-.. .    .+..      ..........+  
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~-~PlL~~va~-G----~l~~------~~i~~p~~~~~~~  106 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLF-TPLLPSAPV-G----TVDE------KSIIEPIVNFALK  106 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEEC-GGGGGGTTT-T----SSCG------GGGEEEHHHHHTT
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCccc-ccchhHHhh-c----cccH------HHhhhhHHHHHHh
Confidence            5689999999999999999987655   4999999987655 344321100 0    0000      00001122222  


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEeC--------------------CCcEEEeceEEeecCCCcccccccCCCCCCCCCe
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVTA--------------------TGETISYKILIIATGARALKLEEFGLSGSDAENV  141 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~~--------------------~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v  141 (479)
                      ++.+++++.+ +|++||+++++|.+.                    ++.++.||+||||||++|..+++   ||.. ++.
T Consensus       107 ~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~i---pG~~-e~a  181 (502)
T 4g6h_A          107 KKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGI---PGVT-DYG  181 (502)
T ss_dssp             CSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTC---TTHH-HHC
T ss_pred             hcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCc---cCcc-ccc
Confidence            2457999987 899999999988753                    35689999999999999988776   6653 567


Q ss_pred             EEecCHHHHHHHHHHHhcC---------------CCCCEEEECCChHHHHHHHHHhhC--------------CCeEEEEe
Q 011700          142 CYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVIN--------------KINVTMVF  192 (479)
Q Consensus       142 ~~~~~~~~~~~l~~~l~~~---------------~~~~vvVIGgG~~g~E~A~~l~~~--------------g~~Vtlv~  192 (479)
                      +.++++.++.++++.+...               ...+++|||+|++|+|+|..|.++              ..+|++++
T Consensus       182 ~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve  261 (502)
T 4g6h_A          182 HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVE  261 (502)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEec
Confidence            8899999998887655321               124799999999999999998754              36899999


Q ss_pred             ecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc----EEeccEEEEecCCCCChh---
Q 011700          193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS---  265 (479)
Q Consensus       193 ~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~----~i~~D~Vi~a~G~~p~~~---  265 (479)
                      +.+++++. +++++++.+++.|+++||++++++.|++++.  ++........||+    ++++|.||||+|.+|+..   
T Consensus       262 ~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~  338 (502)
T 4g6h_A          262 ALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITD  338 (502)
T ss_dssp             SSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHH
T ss_pred             cccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHh
Confidence            99999986 8999999999999999999999999999964  4444555667764    699999999999999953   


Q ss_pred             hhh-ccccc-ccCcEEEcCcccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          266 LFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       266 l~~-~~~~~-~~g~i~Vd~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +.. .+... .+|+|.||++||| ++|||||+|||+..+.+        +.++.|.+||+++|+||..
T Consensus       339 l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          339 LFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             HHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHHHHH
Confidence            222 23333 5688999999999 89999999999987654        6788999999999999853

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=1.1e-39  Score=318.51  Aligned_cols=299  Identities=21%  Similarity=0.221  Sum_probs=207.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCC-CCCCCCCCcccc-cCCcccCCCH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLP-EAPARLPSFHTC-VGANEERLTP   78 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~   78 (479)
                      |++.|||+||||||||++||.+|+++|++   |+|||+++...   .++. +.+.. ....++|++... .+.+......
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg---~~~~-G~~~~~~~i~~~~g~~~~i~~~~l~~~~~   73 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGG---VAAG-GQLTTTTIIENFPGFPNGIDGNELMMNMR   73 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGG---CCTT-CGGGGSSEECCSTTCTTCEEHHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCC---cccC-CCcCChHHhhhccCCcccCCHHHHHHHHH
Confidence            78889999999999999999999999987   89999975311   1111 11110 111223333211 1111122334


Q ss_pred             hHHHHcCcEEEeCceEEEEECC--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700           79 KWYNEHGIELVLGTRVKSADVR--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV  156 (479)
Q Consensus        79 ~~~~~~gv~~~~~~~v~~i~~~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~  156 (479)
                      +.+.+.++++... .+......  ...+.+.++.++.||+||||||++|+.|++   ||.+...............   .
T Consensus        74 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~i---pG~~~~~~~~~~~~~~~~~---~  146 (314)
T 4a5l_A           74 TQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHV---PGEDKYWQNGVSACAICDG---A  146 (314)
T ss_dssp             HHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCC---TTHHHHBTTTEESCHHHHT---T
T ss_pred             HHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCC---Cccccccccceeeehhhhh---h
Confidence            5566788888876 45555544  345667788899999999999999998887   5543221111222222111   1


Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g  236 (479)
                      .....+++++|||+|++|+|+|..|+++|.+||+++|.+....   .++.   ..+.+...+++.+....+.+++.. +.
T Consensus       147 ~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~i~~~-~~  219 (314)
T 4a5l_A          147 VPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKTM---QERVLNHPKIEVIWNSELVELEGD-GD  219 (314)
T ss_dssp             SGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEES-SS
T ss_pred             hhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cchh---hhhhhcccceeeEeeeeeEEEEee-ee
Confidence            1112578999999999999999999999999999998876543   3332   334456778999999888888763 33


Q ss_pred             cEEEEEe-----CCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700          237 KVVAVNL-----RDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  311 (479)
Q Consensus       237 ~v~~v~~-----~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~  311 (479)
                      ....+.+     .+++++++|.|++++|++||+++++..+...++++.||+++|||+|+|||+|||+..+.         
T Consensus       220 ~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~---------  290 (314)
T 4a5l_A          220 LLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRVY---------  290 (314)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSSC---------
T ss_pred             ccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCcc---------
Confidence            3333333     34568999999999999999999887766655556699999999999999999998754         


Q ss_pred             ccHHHHHHHHHHHHHHHc
Q 011700          312 EHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~  329 (479)
                      .++..|..+|+.||.++.
T Consensus       291 ~~~~~A~~~G~~AA~~~~  308 (314)
T 4a5l_A          291 RQAIVAAGSGCMAALSCE  308 (314)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            346678899999998874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-38  Score=308.72  Aligned_cols=301  Identities=20%  Similarity=0.241  Sum_probs=218.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCC-CCCCCCcccccCCcccCCCHh
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEA-PARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      |++++||+|||||+||+++|..|+++|++   |+|||+++.....  +.   ...+.. ....+.+...........+.+
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~   73 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPGGQ--LT---ALYPEKYIYDVAGFPKVYAKDLVKGLVE   73 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSCHH--HH---HTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCe--ee---ccCCCceeeccCCCCCCCHHHHHHHHHH
Confidence            34568999999999999999999998886   9999998642110  00   000000 011111111001111122334


Q ss_pred             HHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC---CCeEE-ecCHHHHHHH
Q 011700           80 WYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDA---ENVCY-LRDLADANRL  153 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~---~~v~~-~~~~~~~~~l  153 (479)
                      .+++++++++.+++|..++.+.  ..+.+.+++++.||+||+|||+.+..|..++++|.+.   ..+++ +++..     
T Consensus        74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~-----  148 (335)
T 2zbw_A           74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKA-----  148 (335)
T ss_dssp             HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGG-----
T ss_pred             HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchh-----
Confidence            4556789999898999988764  3466667778999999999999533333222355321   22322 22221     


Q ss_pred             HHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          154 VNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       154 ~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                           ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++   .++..+.+.+.+++.||++++++.+.+++. 
T Consensus       149 -----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~-  219 (335)
T 2zbw_A          149 -----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRRVEG-  219 (335)
T ss_dssp             -----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEEEEE-
T ss_pred             -----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCcceeEcc-
Confidence                 12479999999999999999999999999999999988754   467788888999999999999999999987 


Q ss_pred             CCCcEEEEEeC---CC--cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCc
Q 011700          234 SNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE  307 (479)
Q Consensus       234 ~~g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~  307 (479)
                       ++.+..+.+.   +|  +++++|.|++++|++|++++++. ++..++|+|.||+++||+.|+|||+|||+..+..    
T Consensus       220 -~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----  294 (335)
T 2zbw_A          220 -DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK----  294 (335)
T ss_dssp             -SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC----
T ss_pred             -CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc----
Confidence             3444456665   66  57999999999999999887654 4555678999999999999999999999986431    


Q ss_pred             eeecccHHHHHHHHHHHHHHHcCC
Q 011700          308 TRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                         ...+..|..||+.+|.||.+.
T Consensus       295 ---~~~~~~A~~~g~~aa~~i~~~  315 (335)
T 2zbw_A          295 ---LPLIVLGFGEAAIAANHAAAY  315 (335)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhhhhHHHHHHHHHHHHHH
Confidence               156888999999999999754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=6.2e-38  Score=306.99  Aligned_cols=297  Identities=21%  Similarity=0.221  Sum_probs=219.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHh
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPK   79 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (479)
                      ||+++||+|||||+||+++|.+|++.|++   |+|+|+....  .      .+........+|.+.... ..........
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKG--G------QLTTTTEVENWPGDPNDLTGPLLMERMHE   70 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTT--G------GGGGCSBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCCCC--c------eEecchhhhhCCCCCCCCCHHHHHHHHHH
Confidence            45678999999999999999999999887   8999975211  0      011111111222221100 1111122345


Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEEE-eCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTLV-TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v~-~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      ++.+.+++++.++ +..++.+.+.+. +.++.++.||+||+|||+.|..|++++........++++....+      .+ 
T Consensus        71 ~~~~~~~~~~~~~-v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~-  142 (320)
T 1trb_A           71 HATKFETEIIFDH-INKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDG------FF-  142 (320)
T ss_dssp             HHHHTTCEEECCC-EEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHG------GG-
T ss_pred             HHHHCCCEEEEee-eeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCc------cc-
Confidence            5667899999985 889987665443 56778899999999999998877663321111123333222211      11 


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                       ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .++.+.+.+.+.+++.||++++++++.+++. +++.+
T Consensus       143 -~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~~~v  217 (320)
T 1trb_A          143 -YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGV  217 (320)
T ss_dssp             -GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSE
T ss_pred             -cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc---cCHHHHHHHHHhcccCCeEEEcCceeEEEEc-CCCce
Confidence             257999999999999999999999999999999988764   3788888888999999999999999999987 34456


Q ss_pred             EEEEeCC----C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcc-----cCCCCCeEEEeeeccccccccCc
Q 011700          239 VAVNLRD----G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRL-----QSSNSSVYAVGDVAAFPLKLLGE  307 (479)
Q Consensus       239 ~~v~~~~----g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l-----~t~~~~IyA~GD~~~~~~~~~g~  307 (479)
                      ..+.+.+    |  +++++|.|++|+|++|++++++.++..++|+|.||+++     +|+.|+|||+|||+..+.     
T Consensus       218 ~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~-----  292 (320)
T 1trb_A          218 TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY-----  292 (320)
T ss_dssp             EEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSS-----
T ss_pred             EEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCcc-----
Confidence            5566654    4  57999999999999999998875565567889999997     899999999999998642     


Q ss_pred             eeecccHHHHHHHHHHHHHHHcC
Q 011700          308 TRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                          ..+..|..+|+.||.+|..
T Consensus       293 ----~~~~~A~~~g~~aa~~i~~  311 (320)
T 1trb_A          293 ----RQAITSAGTGCMAALDAER  311 (320)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHH
T ss_pred             ----hhhhhhhccHHHHHHHHHH
Confidence                4577899999999999864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=9.3e-38  Score=311.12  Aligned_cols=302  Identities=23%  Similarity=0.305  Sum_probs=218.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCC-CCCCCCCcccccCCcccCCCHh
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPE-APARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      ||+++||+|||||+||+++|..|++.|++   |+|||+.+.....  +.   ...+. .....+.+...........+.+
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~   82 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQLGGQ--LA---ALYPEKHIYDVAGFPEVPAIDLVESLWA   82 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--HH---HTCTTSEECCSTTCSSEEHHHHHHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCc--cc---ccCCCcccccCCCCCCCCHHHHHHHHHH
Confidence            55678999999999999999999998887   9999998642110  00   00000 0011121111001111122334


Q ss_pred             HHHHcCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCC---cccccccC-CCCCCCCCeEE-ecCHHHHH
Q 011700           80 WYNEHGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGAR---ALKLEEFG-LSGSDAENVCY-LRDLADAN  151 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~---~~~~~~~g-~~g~~~~~v~~-~~~~~~~~  151 (479)
                      .+++.+++++.+++|..++.+.+   .+.+.+++++.||+||+|||+.   |..|+++| ........+++ +++..   
T Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~---  159 (360)
T 3ab1_A           83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE---  159 (360)
T ss_dssp             HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG---
T ss_pred             HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH---
Confidence            45667899999989999987643   6777788889999999999994   55555533 22122223432 22221   


Q ss_pred             HHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       152 ~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                             ...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+++.   +++.+.+.+.+++.||++++++++.+++
T Consensus       160 -------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~  229 (360)
T 3ab1_A          160 -------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIE  229 (360)
T ss_dssp             -------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred             -------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence                   125799999999999999999999999999999999877652   4566777888889999999999999998


Q ss_pred             EcCCCcEEEEEeC--CC--cEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700          232 VDSNGKVVAVNLR--DG--NRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       232 ~~~~g~v~~v~~~--~g--~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g  306 (479)
                      . +++++..+.+.  +|  +++++|.|++++|++|++++++. ++..++|+|.||+++||++|+|||+|||+..+..   
T Consensus       230 ~-~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---  305 (360)
T 3ab1_A          230 E-SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK---  305 (360)
T ss_dssp             E-ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC---
T ss_pred             c-CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc---
Confidence            7 35655556664  77  57999999999999999987754 4555678999999999999999999999986431   


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcCC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                          ..++..|..||+.||.+|.+.
T Consensus       306 ----~~~~~~A~~~g~~aa~~i~~~  326 (360)
T 3ab1_A          306 ----LKIIQTGLSEATMAVRHSLSY  326 (360)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHHH
T ss_pred             ----cceeehhHHHHHHHHHHHHhh
Confidence                156888999999999999754

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.5e-37  Score=302.87  Aligned_cols=290  Identities=22%  Similarity=0.282  Sum_probs=211.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||+||||||||+++|.+|++.|++   |+|||+.....+         ........++.............+.+++++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE   68 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999999998887   899976421110         000000011111000001111233455667


Q ss_pred             cCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           84 HGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      .+++++.+++|..++.+     ...+.+.+++++.||+||+|||+.|..|+++|........++++..      +...  
T Consensus        69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~------~~~~--  140 (310)
T 1fl2_A           69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPH------CDGP--  140 (310)
T ss_dssp             SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHH------HHGG--
T ss_pred             cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEecc------CcHh--
Confidence            89999999899999865     3567777888899999999999998877764332222233443221      1111  


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCc
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ...+++++|||+|++|+|+|..|++.+.+|+++++.+.+.   +++.    +.+.+++ .||++++++++++++. ++++
T Consensus       141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~~~~v~~i~~-~~~~  212 (310)
T 1fl2_A          141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQV----LQDKLRSLKNVDIILNAQTTEVKG-DGSK  212 (310)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccHH----HHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence            1257999999999999999999999999999999998762   3543    4455666 6999999999999987 4456


Q ss_pred             EEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700          238 VVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  311 (479)
Q Consensus       238 v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~  311 (479)
                      +..+.+.+   |+  ++++|.|++++|++|++++++..+.. ++|+|.||+++||+.|+|||+|||+..+.         
T Consensus       213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  283 (310)
T 1fl2_A          213 VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY---------  283 (310)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS---------
T ss_pred             EEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCCcc---------
Confidence            65566643   53  68999999999999999887655555 56899999999999999999999998653         


Q ss_pred             ccHHHHHHHHHHHHHHHcC
Q 011700          312 EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..+..|..||+.||.+|..
T Consensus       284 ~~~~~A~~~g~~aa~~i~~  302 (310)
T 1fl2_A          284 KQIIIATGEGAKASLSAFD  302 (310)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHhhHHHHHHHHHH
Confidence            3577899999999999864

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=3.2e-37  Score=302.85  Aligned_cols=291  Identities=21%  Similarity=0.258  Sum_probs=210.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (479)
                      +++||+||||||||+++|..|+++|++   |+|||++..  ...      +.........|.+... ........+.+.+
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~--gg~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   75 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKGMP--GGQ------IAWSEEVENFPGFPEPIAGMELAQRMHQQA   75 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT--TGG------GGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCCCC--Ccc------cccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999999886   999999832  110      1000011112222110 0011112334556


Q ss_pred             HHcCcEEEeCceEEEEECC--C---cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700           82 NEHGIELVLGTRVKSADVR--R---KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV  156 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~--~---~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~  156 (479)
                      ++.+++++.+ +|..++.+  +   ..+.+.+++++.||+||+|||+.|..|++++........++++.....       
T Consensus        76 ~~~gv~~~~~-~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~-------  147 (325)
T 2q7v_A           76 EKFGAKVEMD-EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDG-------  147 (325)
T ss_dssp             HHTTCEEEEC-CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHG-------
T ss_pred             HHcCCEEEee-eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCH-------
Confidence            6789999885 89988875  3   467777888999999999999998887763322111133433222111       


Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g  236 (479)
                      . ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.   .++.+.+   +.+++.||++++++++++++.  ++
T Consensus       148 ~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~~---~l~~~~gv~i~~~~~v~~i~~--~~  218 (325)
T 2q7v_A          148 F-FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR---ANKVAQA---RAFANPKMKFIWDTAVEEIQG--AD  218 (325)
T ss_dssp             G-GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC---SCHHHHH---HHHTCTTEEEECSEEEEEEEE--SS
T ss_pred             H-HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC---cchHHHH---HHHhcCCceEecCCceEEEcc--CC
Confidence            1 1257899999999999999999999999999999988764   2444332   223457999999999999986  34


Q ss_pred             cEEEEEeC---CCc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          237 KVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       237 ~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      ++..+.+.   +|+  ++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.        
T Consensus       219 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------  290 (325)
T 2q7v_A          219 SVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY--------  290 (325)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC--------
T ss_pred             cEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH--------
Confidence            55556664   665  79999999999999999887655544 57899999999999999999999998632        


Q ss_pred             cccHHHHHHHHHHHHHHHcC
Q 011700          311 LEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~  330 (479)
                       ..+..|..||+.||.||..
T Consensus       291 -~~~~~A~~~g~~aa~~i~~  309 (325)
T 2q7v_A          291 -RQLATSVGAGTRAAMMTER  309 (325)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHH
Confidence             4678899999999999975

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=3.3e-37  Score=301.87  Aligned_cols=292  Identities=24%  Similarity=0.290  Sum_probs=209.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+.++||+|||||+||+++|..|+++|++   |+|||+....  ..      +........+|.+....+......+.+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAVAG--GL------TAEAPLVENYLGFKSIVGSELAKLFADH   81 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTT--GG------GGGCSCBCCBTTBSSBCHHHHHHHHHHH
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCC--cc------ccccchhhhcCCCcccCHHHHHHHHHHH
Confidence            45568999999999999999999999886   9999995321  10      1000011112222100011111223445


Q ss_pred             HHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHh
Q 011700           81 YNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~  158 (479)
                      +++.+++++. .++..++.+++  .+.+ ++.++.||+||+|||+.|..|++++........+++.......      . 
T Consensus        82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~------~-  152 (319)
T 3cty_A           82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY------L-  152 (319)
T ss_dssp             HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG------G-
T ss_pred             HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh------h-
Confidence            5677999988 58998887655  4555 5668999999999999988877633221111334333222111      1 


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcE
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV  238 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v  238 (479)
                       ..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+..   ++.    +.+.+++.||++++++++++++. +++++
T Consensus       153 -~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~v  223 (319)
T 3cty_A          153 -FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVG-DGKKV  223 (319)
T ss_dssp             -GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEE-SSSSE
T ss_pred             -cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEec-CCceE
Confidence             2478999999999999999999999999999999877632   444    34456688999999999999987 34545


Q ss_pred             EEEEeC---CCc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeec
Q 011700          239 VAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL  311 (479)
Q Consensus       239 ~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~  311 (479)
                      ..+.+.   +|+  ++++|.|++|+|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+.         
T Consensus       224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---------  294 (319)
T 3cty_A          224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF---------  294 (319)
T ss_dssp             EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred             EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence            556664   565  6999999999999999988764 4555 56899999999999999999999998642         


Q ss_pred             ccHHHHHHHHHHHHHHHcC
Q 011700          312 EHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       312 ~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..+..|..||+.||.+|..
T Consensus       295 ~~~~~A~~~g~~aa~~i~~  313 (319)
T 3cty_A          295 AQIASAVGDGCKAALSLYS  313 (319)
T ss_dssp             CCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            4577899999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=3.6e-37  Score=300.43  Aligned_cols=286  Identities=19%  Similarity=0.248  Sum_probs=209.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKWYN   82 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   82 (479)
                      +||+|||||+||+++|..|++.|+ +   |+|||++....   .     +........+|.+.... .......+.+.++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~~gg---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   70 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGMPGG---Q-----ITGSSEIENYPGVKEVVSGLDFMQPWQEQCF   70 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSSTTC---G-----GGGCSCBCCSTTCCSCBCHHHHHHHHHHHHH
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCCCCc---c-----cccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence            799999999999999999999988 6   99999963211   0     00000011122211100 0111122344556


Q ss_pred             HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~~l  157 (479)
                      +.+++++. ++|..++.+.+  .+.+.++++++||+||+|||+.|..|++   +|.+   ...++++......      .
T Consensus        71 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~---~g~~~~~~~~~~~~~~~~~~------~  140 (311)
T 2q0l_A           71 RFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI---KGESEYWGKGVSTCATCDGF------F  140 (311)
T ss_dssp             TTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCC---BTHHHHBTTTEESCHHHHGG------G
T ss_pred             HcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCC---CChhhccCCcEEEeecCChh------h
Confidence            77999988 58998887666  5667788899999999999999888776   4432   1334433322111      1


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH-hCCcEEEcCCceEEEEEcCCC
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g  236 (479)
                        ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++.   .++++.    +.+. +.||++++++.+++++.+ ++
T Consensus       141 --~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~~----~~l~~~~gv~v~~~~~v~~i~~~-~~  210 (311)
T 2q0l_A          141 --YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPITL----EHAKNNDKIEFLTPYVVEEIKGD-AS  210 (311)
T ss_dssp             --GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHHH----HHHHTCTTEEEETTEEEEEEEEE-TT
T ss_pred             --cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHHH----HHHhhCCCeEEEeCCEEEEEECC-CC
Confidence              257999999999999999999999999999999988763   355433    3343 579999999999999873 34


Q ss_pred             cEEEEEeC---CCc--EEeccEEEEecCCCCChhhhhcc-----ccc-ccCcEEEcCcccCCCCCeEEEeeecccccccc
Q 011700          237 KVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFEGQ-----LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLL  305 (479)
Q Consensus       237 ~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~~~-----~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~  305 (479)
                      .+..+.+.   +|+  ++++|.|++++|++|++++++..     +.. ++|+|.||+++||++|+|||+|||+..+.   
T Consensus       211 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---  287 (311)
T 2q0l_A          211 GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---  287 (311)
T ss_dssp             EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---
T ss_pred             cEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---
Confidence            44456665   665  79999999999999999887653     555 57899999999999999999999998632   


Q ss_pred             CceeecccHHHHHHHHHHHHHHHcC
Q 011700          306 GETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       306 g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                            ..+..|..||+.||.||..
T Consensus       288 ------~~~~~A~~~g~~aa~~i~~  306 (311)
T 2q0l_A          288 ------KQVVCAASDGATAALSVIS  306 (311)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHhHHHHHHHHHH
Confidence                  4678899999999999864

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=1.1e-37  Score=303.25  Aligned_cols=284  Identities=10%  Similarity=0.045  Sum_probs=194.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc---CCcccCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV---GANEERLT   77 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   77 (479)
                      +|++|||+||||||||++||.+|+|+|++   |+|||++...         +.+.    ...|.+....   ........
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~~g---------g~~~----~~~~~~~~~~~~~~~~~~~~~   66 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNTNR---------NRVT----QNSHGFITRDGIKPEEFKEIG   66 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCG---------GGGS----SCBCCSTTCTTBCHHHHHHHH
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC---------Ceee----eecCCccCCCCCCHHHHHHHH
Confidence            36789999999999999999999999987   9999987421         1110    0111111000   00000111


Q ss_pred             HhHHHHc-CcEEEeCceEEEEEC-C--CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHH
Q 011700           78 PKWYNEH-GIELVLGTRVKSADV-R--RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRL  153 (479)
Q Consensus        78 ~~~~~~~-gv~~~~~~~v~~i~~-~--~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l  153 (479)
                      .+.+.++ ++.+... .+..++. +  .+++.+.++++++||+||||||++|+.|+++|........++++.....    
T Consensus        67 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~----  141 (304)
T 4fk1_A           67 LNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDG----  141 (304)
T ss_dssp             HHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHS----
T ss_pred             HHHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccch----
Confidence            1222233 4566655 4444432 2  3577888899999999999999999988873322111233433222111    


Q ss_pred             HHHHhcCCCCCEEEECCCh-HHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          154 VNVMKSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       154 ~~~l~~~~~~~vvVIGgG~-~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                         . ...+++++|||+|. .++|+|..+.+.+.+|+++.+.+.+     .+    .+.+.++++|++++.+. +..+..
T Consensus       142 ---~-~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~-----~~----~~~~~l~~~g~~~~~~~-v~~~~~  207 (304)
T 4fk1_A          142 ---W-ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNEL-----SQ----TIMDELSNKNIPVITES-IRTLQG  207 (304)
T ss_dssp             ---G-GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCC-----CH----HHHHHHHTTTCCEECSC-EEEEES
T ss_pred             ---h-HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccc-----hh----hhhhhhhccceeEeeee-EEEeec
Confidence               1 12467888888885 5689999999999999999877553     22    34566788999999775 677765


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh-hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l-~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                       +++++..+.+.+|+++++|.+++++|.+|++.+ .+.++.+ ++|+|.||+++|||+|+|||+|||+..+.        
T Consensus       208 -~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~--------  278 (304)
T 4fk1_A          208 -EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP--------  278 (304)
T ss_dssp             -GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSC--------
T ss_pred             -CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcc--------
Confidence             456677899999999999988888776665554 4556777 67889999999999999999999997543        


Q ss_pred             cccHHHHHHHHHHHHHHHc
Q 011700          311 LEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~  329 (479)
                       .++..|..+|+.||.+|.
T Consensus       279 -~~~~~A~~~G~~AA~~i~  296 (304)
T 4fk1_A          279 -SSLIIAASQGNKAAIAIN  296 (304)
T ss_dssp             -CCHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHHHHH
Confidence             356788999999998774

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=9.6e-37  Score=298.41  Aligned_cols=291  Identities=22%  Similarity=0.227  Sum_probs=212.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||+|||||+||+++|.+|+++|++   |+|||++ ..  .      .+........+|.+...........+.+++++
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~g--g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET-PG--G------QLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK   82 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-TT--G------GGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc-CC--C------eecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999887   9999998 11  0      01111111122222111111122234455667


Q ss_pred             cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCC
Q 011700           84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCS  161 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~  161 (479)
                      ++++++. ++|.+++.++  ..+.+.++.++.||+||+|||+.|..|++++........+++... .+       .....
T Consensus        83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~-~~-------~~~~~  153 (323)
T 3f8d_A           83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSV-AD-------APLFK  153 (323)
T ss_dssp             TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHH-HH-------GGGGT
T ss_pred             cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEecc-CC-------HhHcC
Confidence            8999998 7899998764  356777778999999999999998888763332221244433211 11       11225


Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      +++++|||+|++++|+|..|.+.+.+|+++++.+++++   ++++   +.+.+++.||++++++.+.+++.  ++.+..+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~~--~~~~~~v  225 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPIY---VETVKKKPNVEFVLNSVVKEIKG--DKVVKQV  225 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEEE--SSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHHH---HHHHHhCCCcEEEeCCEEEEEec--cCceeEE
Confidence            79999999999999999999999999999999988765   3333   33334456999999999999987  3555567


Q ss_pred             EeCC---Cc--EEeccEEEEecCCCCChhhhhc-cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700          242 NLRD---GN--RLPTDMVVVGIGIRPNTSLFEG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  314 (479)
Q Consensus       242 ~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~-~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  314 (479)
                      .+.+   |+  ++++|.|++++|++|++++++. ++.. ++|+|.||+++||+.|+|||+|||+..+.       ....+
T Consensus       226 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~~~~  298 (323)
T 3f8d_A          226 VVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GFRQV  298 (323)
T ss_dssp             EEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TCCCH
T ss_pred             EEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cccce
Confidence            6665   76  7999999999999999887754 4665 67899999999999999999999998631       11568


Q ss_pred             HHHHHHHHHHHHHHcC
Q 011700          315 DSARKSAKHAVAAIME  330 (479)
Q Consensus       315 ~~A~~~g~~aa~~i~~  330 (479)
                      ..|..||+.||.+|..
T Consensus       299 ~~A~~~g~~aa~~i~~  314 (323)
T 3f8d_A          299 ITAVAQGAVAATSAYR  314 (323)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eehhhHHHHHHHHHHH
Confidence            8899999999999864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=1e-36  Score=297.31  Aligned_cols=291  Identities=17%  Similarity=0.184  Sum_probs=208.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCI-ISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKW   80 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (479)
                      +++||+|||||+||++||.+|+++|++   |+| +|++...        ..+........+|.+.. .........+.++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~~g--------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGMPG--------GQITSSSEIENYPGVAQVMDGISFMAPWSEQ   71 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSSTT--------GGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCCCC--------ceeeeeceeccCCCCCCCCCHHHHHHHHHHH
Confidence            458999999999999999999999987   788 9995321        00111111112222210 0111112233455


Q ss_pred             HHHcCcEEEeCceEEEEECCC--cEEE--eCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHH
Q 011700           81 YNEHGIELVLGTRVKSADVRR--KTLV--TATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNV  156 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~--~~v~--~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~  156 (479)
                      +++.+++++.+ +|..+ .+.  +.+.  +..+.++.||+||+|||+.|..|++++........+++......       
T Consensus        72 ~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~-------  142 (315)
T 3r9u_A           72 CMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDG-------  142 (315)
T ss_dssp             HTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHG-------
T ss_pred             HHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccc-------
Confidence            66789999988 88888 433  3333  43333899999999999998888774332221234433222111       


Q ss_pred             HhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC
Q 011700          157 MKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       157 l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g  236 (479)
                       ....+++++|||+|++++|+|..|.+.+.+|+++++.+++.   .++++.   .+.+++.||++++++.+.+++. +++
T Consensus       143 -~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~---~~~~~~---~~~~~~~gv~~~~~~~v~~i~~-~~~  214 (315)
T 3r9u_A          143 -FFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFR---AAPSTV---EKVKKNEKIELITSASVDEVYG-DKM  214 (315)
T ss_dssp             -GGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCB---SCHHHH---HHHHHCTTEEEECSCEEEEEEE-ETT
T ss_pred             -cccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCC---CCHHHH---HHHHhcCCeEEEeCcEEEEEEc-CCC
Confidence             11257999999999999999999999999999999998763   244443   4455789999999999999987 344


Q ss_pred             cEEEEEeC--CCc--EEeccEEEEecCCCCChhhhhc-----cccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700          237 KVVAVNLR--DGN--RLPTDMVVVGIGIRPNTSLFEG-----QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       237 ~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~~~l~~~-----~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g  306 (479)
                      .+..+.+.  +|+  ++++|.|++++|++|++.+++.     ++.. ++|+|.||+++||+.|+|||+|||+..+.    
T Consensus       215 ~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~----  290 (315)
T 3r9u_A          215 GVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP----  290 (315)
T ss_dssp             EEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC----
T ss_pred             cEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch----
Confidence            55556655  775  7999999999999999998876     3665 56899999999999999999999986432    


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                           ..+..|..||+.||.+|..
T Consensus       291 -----~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          291 -----KQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHH
T ss_pred             -----hhhhhHHhhHHHHHHHHHH
Confidence                 5678899999999999863

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=2.8e-37  Score=304.36  Aligned_cols=294  Identities=20%  Similarity=0.232  Sum_probs=213.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWYN   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   82 (479)
                      ++||+|||||++|+++|..|+++|++   |+|||+.+...   ......+........+|.+... ........+.++++
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMMANG---IAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQST   95 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCCC---CCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHH
Confidence            58999999999999999999999987   89999975111   1111111111111122222110 11112233455667


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEe-----CCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVT-----ATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLV  154 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~-----~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~  154 (479)
                      +.+++++.++ |..++.+.+.+.+     .++.++.||+||+|||++|..|++   +|.+   ...+.+...      +.
T Consensus        96 ~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~---~g~~~~~~~~~~~~~~------~~  165 (338)
T 3itj_A           96 KFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHL---PGEETYWQKGISACAV------CD  165 (338)
T ss_dssp             HTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCC---TTHHHHBTTTEESCHH------HH
T ss_pred             HcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCC---CCchhccCccEEEchh------cc
Confidence            7899999986 9999988765554     466789999999999999887776   4432   123332211      11


Q ss_pred             HHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEc
Q 011700          155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       155 ~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~  233 (479)
                      ..+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++   .    +.+.+.+.+ .||++++++.+.+++. 
T Consensus       166 ~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~---~----~~~~~~l~~~~gv~i~~~~~v~~i~~-  237 (338)
T 3itj_A          166 GAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA---S----TIMQKRAEKNEKIEILYNTVALEAKG-  237 (338)
T ss_dssp             TTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---C----HHHHHHHHHCTTEEEECSEEEEEEEE-
T ss_pred             cchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC---C----HHHHHHHHhcCCeEEeecceeEEEEc-
Confidence            111122579999999999999999999999999999999987654   2    334445545 4999999999999987 


Q ss_pred             CCCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhhccccc-ccCcEEE-cCcccCCCCCeEEEeeeccccccccC
Q 011700          234 SNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       234 ~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~V-d~~l~t~~~~IyA~GD~~~~~~~~~g  306 (479)
                      +++.+..+.+.+     ++++++|.|++++|++|++.+++.++.. ++|+|.| |++++|+.|+|||+|||+..+.    
T Consensus       238 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~----  313 (338)
T 3itj_A          238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY----  313 (338)
T ss_dssp             SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC----
T ss_pred             ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc----
Confidence            445565677665     4679999999999999999988777766 5788884 8899999999999999997432    


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                           ..+..|..+|+.||.+|..
T Consensus       314 -----~~~~~A~~~g~~aa~~i~~  332 (338)
T 3itj_A          314 -----RQAITSAGSGCMAALDAEK  332 (338)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHH
T ss_pred             -----cceeeehhhhHHHHHHHHH
Confidence                 4577899999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=6.7e-37  Score=300.86  Aligned_cols=292  Identities=19%  Similarity=0.232  Sum_probs=212.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+|||||+||+++|..|++.|++   |+|||+++.....  .  ............+.+...........+.+.+++
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gG~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQLGGQ--L--SALYPEKYIYDVAGFPKIRAQELINNLKEQMAK   79 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--H--HHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTT
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCCCce--e--hhcCCCceEeccCCCCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999998886   9999998642200  0  000000001122222211111122234455566


Q ss_pred             cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCC---CcccccccCCCCCCC---CCeEEecCHHHHHHHH
Q 011700           84 HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGA---RALKLEEFGLSGSDA---ENVCYLRDLADANRLV  154 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~---~~~~~~~~g~~g~~~---~~v~~~~~~~~~~~l~  154 (479)
                      ++++++.+++|..++.+.+   .+.+.+++ +.||+||+|||+   .|..|++   +|.+.   ..+++  .+.+...  
T Consensus        80 ~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~~---~g~~~~~g~~~~~--~~~~~~~--  151 (332)
T 3lzw_A           80 FDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLEL---ENAEQYEGKNLHY--FVDDLQK--  151 (332)
T ss_dssp             SCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCCC---TTGGGGBTTTEES--SCSCGGG--
T ss_pred             hCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCCC---CChhhccCceEEE--ecCCHHH--
Confidence            7999999999999998765   67777775 999999999999   6776665   55432   23332  2222221  


Q ss_pred             HHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700          155 NVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  234 (479)
Q Consensus       155 ~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  234 (479)
                           ..+++++|||+|++|+|+|..|.+.+.+|+++++.+++.+  .++.     .+.+++.||++++++.+.+++.+ 
T Consensus       152 -----~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~-----~~~l~~~gv~~~~~~~v~~i~~~-  218 (332)
T 3lzw_A          152 -----FAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS-----VENLHASKVNVLTPFVPAELIGE-  218 (332)
T ss_dssp             -----GBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH-----HHHHHHSSCEEETTEEEEEEECS-
T ss_pred             -----cCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH-----HHHHhcCCeEEEeCceeeEEecC-
Confidence                 2479999999999999999999999999999999988654  2322     34478899999999999999863 


Q ss_pred             CCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhhc-ccccccCcEEEcCcccCCCCCeEEEeeeccccccccCce
Q 011700          235 NGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET  308 (479)
Q Consensus       235 ~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~  308 (479)
                      ++ ...+.+.+     ++++++|.|++++|++|++++++. ++..++|+|.||+++||+.|+|||+|||+..+..     
T Consensus       219 ~~-~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~-----  292 (332)
T 3lzw_A          219 DK-IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK-----  292 (332)
T ss_dssp             SS-CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-----
T ss_pred             Cc-eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-----
Confidence            22 34455554     357999999999999999987764 4556789999999999999999999999975422     


Q ss_pred             eecccHHHHHHHHHHHHHHHcCC
Q 011700          309 RRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                        ...+..|..||+.||.+|...
T Consensus       293 --~~~~~~A~~~g~~aa~~i~~~  313 (332)
T 3lzw_A          293 --VNLIASGFGEAPTAVNNAKAY  313 (332)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHH
T ss_pred             --cceEeeehhhHHHHHHHHHHh
Confidence              157888999999999998753

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=3e-38  Score=321.90  Aligned_cols=307  Identities=18%  Similarity=0.207  Sum_probs=219.2

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+  ++|||||||+||++||.+|++++. +.+|+|||+++++.|. |.+.. +....  ...        .+....+.++
T Consensus         1 M~--K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g~--~~~--------~~i~~~~~~~   65 (430)
T 3hyw_A            1 MA--KHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMGW--RKF--------EDISVPLAPL   65 (430)
T ss_dssp             -C--CEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHTC--SCG--------GGSEEESTTT
T ss_pred             CC--CcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcCC--CCH--------HHhhhcHHHH
Confidence            65  589999999999999999998763 5679999999876663 43321 10000  000        0111234556


Q ss_pred             HHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC
Q 011700           81 YNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC  160 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~  160 (479)
                      +++.|++++.+ +|++||+++++|++.+|++++||+||||||+++. +++   +|.+ ++.+.+++.+++.++++.+++.
T Consensus        66 ~~~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i---~G~~-e~~~~~~~~~~a~~~~~~l~~~  139 (430)
T 3hyw_A           66 LPKFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGA---EGQE-ENSTSICTAEHALETQKKLQEL  139 (430)
T ss_dssp             GGGGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCS---BTHH-HHSCCCSSHHHHHHHHHHHHHH
T ss_pred             HHHCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCc---cCcc-cCcCCcccHHHHHHHHHHHHhh
Confidence            77889999988 8999999999999999999999999999999864 334   5543 4566788889998888777653


Q ss_pred             -CCCCEEEECCCh------HHHHHH----HHHhhCC----CeEEEEeecCcccc--ccCCHHHHHHHHHHHHhCCcEEEc
Q 011700          161 -SGGNAVVIGGGY------IGMECA----ASLVINK----INVTMVFPEAHCMA--RLFTPKIASYYEEYYKSKGVKFVK  223 (479)
Q Consensus       161 -~~~~vvVIGgG~------~g~E~A----~~l~~~g----~~Vtlv~~~~~~l~--~~~~~~~~~~~~~~l~~~GV~i~~  223 (479)
                       ..+.++|+|++.      .+.|++    ..+.+.+    .+|++++..+.+..  ...++...+.+++.++++||++++
T Consensus       140 ~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~  219 (430)
T 3hyw_A          140 YANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIA  219 (430)
T ss_dssp             HHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEEC
T ss_pred             ccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEe
Confidence             234455555542      223443    3444554    57888887765422  224567788899999999999999


Q ss_pred             CCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhhcccc--c-ccCcEEEcCccc-CCCCCeEEEeee
Q 011700          224 GTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLT--L-EKGGIKVTGRLQ-SSNSSVYAVGDV  297 (479)
Q Consensus       224 ~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~--~-~~g~i~Vd~~l~-t~~~~IyA~GD~  297 (479)
                      ++.|++++.  + .+ .+...+|  +++++|.+++++|.+|+..+...+..  . .+|.|.||++|| |++|||||+|||
T Consensus       220 ~~~v~~v~~--~-~~-~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~  295 (430)
T 3hyw_A          220 NVAVKAIEP--D-KV-IYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVV  295 (430)
T ss_dssp             SCEEEEECS--S-EE-EEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTT
T ss_pred             CceEEEEeC--C-ce-EEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccE
Confidence            999999964  2 22 2344443  57999999999999999766655433  3 356799999999 799999999999


Q ss_pred             ccccccccCc--eeecccHHHHHHHHHHHHHHHcCCC
Q 011700          298 AAFPLKLLGE--TRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       298 ~~~~~~~~g~--~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      +..+......  ....++...|.+||+++|+||+...
T Consensus       296 a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l  332 (430)
T 3hyw_A          296 TAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDI  332 (430)
T ss_dssp             BCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHh
Confidence            9876432111  0123677889999999999998543

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=1.3e-36  Score=293.98  Aligned_cols=281  Identities=19%  Similarity=0.116  Sum_probs=205.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      |+  +||+|||||+||+++|..|+++|++   |+|||+++..... +..         ...++.............+.+.
T Consensus         1 m~--~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~   65 (297)
T 3fbs_A            1 MK--FDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGERRNRF-ASH---------SHGFLGQDGKAPGEIIAEARRQ   65 (297)
T ss_dssp             CC--EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCCGGGG-CSC---------CCSSTTCTTCCHHHHHHHHHHH
T ss_pred             CC--CCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCccccc-chh---------hcCCcCCCCCCHHHHHHHHHHH
Confidence            54  8999999999999999999999986   9999997531100 000         1111111100001111223344


Q ss_pred             HHHc-CcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700           81 YNEH-GIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        81 ~~~~-gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      +.++ +++++.+ +|..++.++  ..+.+.+++++.||+||+|||+.|+.|+++++.......+++... .+.       
T Consensus        66 ~~~~~~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~-~~~-------  136 (297)
T 3fbs_A           66 IERYPTIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPY-CHG-------  136 (297)
T ss_dssp             HTTCTTEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHH-HHT-------
T ss_pred             HHhcCCeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEccc-Ccc-------
Confidence            4455 7888776 899888764  367778888999999999999999888764332211233433221 111       


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      ....+++++|||+|++|+|+|..|.+.| +|+++.+.+..    +++    .+.+.+++.||+++. +.+.+++.  ++ 
T Consensus       137 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~~----~~~~~l~~~gv~i~~-~~v~~i~~--~~-  203 (297)
T 3fbs_A          137 YELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PDA----DQHALLAARGVRVET-TRIREIAG--HA-  203 (297)
T ss_dssp             GGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CCH----HHHHHHHHTTCEEEC-SCEEEEET--TE-
T ss_pred             hhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CCH----HHHHHHHHCCcEEEc-ceeeeeec--CC-
Confidence            1125899999999999999999999999 99999887652    343    356677889999996 88999975  22 


Q ss_pred             EEEEEeCCCcEEeccEEEEecCCCCChhhhhc-ccccc---cC-cEEEcCcccCCCCCeEEEeeeccccccccCceeecc
Q 011700          238 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLE---KG-GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE  312 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~---~g-~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~  312 (479)
                        .+.+.+|+++++|.|++++|++|++++++. ++..+   +| +|.||+++||+.|+|||+|||+..+          .
T Consensus       204 --~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~----------~  271 (297)
T 3fbs_A          204 --DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA----------G  271 (297)
T ss_dssp             --EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT----------C
T ss_pred             --eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch----------H
Confidence              578899999999999999999999887654 45543   35 7999999999999999999999864          4


Q ss_pred             cHHHHHHHHHHHHHHHcC
Q 011700          313 HVDSARKSAKHAVAAIME  330 (479)
Q Consensus       313 ~~~~A~~~g~~aa~~i~~  330 (479)
                      .+..|..||+.||.+|..
T Consensus       272 ~~~~A~~~g~~aa~~i~~  289 (297)
T 3fbs_A          272 SVALAVGDGAMAGAAAHR  289 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHH
Confidence            578899999999999864

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=2.9e-36  Score=304.80  Aligned_cols=302  Identities=20%  Similarity=0.175  Sum_probs=227.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|||||||+||++||.+|++++. ..+|+|||+++.+.| .|.+ ........  ..         .......+.+.+
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~-~p~~-~~v~~g~~--~~---------~~~~~~~~~~~~   67 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYT-CYMS-NEVIGGDR--EL---------ASLRVGYDGLRA   67 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEEC-STTH-HHHHHTSS--CG---------GGGEECSHHHHH
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCC-ccCH-HHHhcCCC--CH---------HHHhhCHHHHHH
Confidence            3689999999999999999998764 467999999875322 2222 11111100  00         001123345667


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCC-CCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGS-DAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~-~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +|++++.+ +|+.||++++++.+.+++++.||+||||||+++..++++|+... ....++.+++.+++..+++.++....
T Consensus        68 ~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (401)
T 3vrd_B           68 HGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDD  146 (401)
T ss_dssp             TTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCT
T ss_pred             CCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhccc
Confidence            89999987 89999999999999999999999999999999998888554321 12345667788888888888887655


Q ss_pred             CCEEEECCCh-----------HHHHHHHHHhhCC--CeEEEEeecCcccc-ccCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGY-----------IGMECAASLVINK--INVTMVFPEAHCMA-RLFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~-----------~g~E~A~~l~~~g--~~Vtlv~~~~~~l~-~~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      .+.+|++++.           .+++++..+++.+  .+|+++++.+.+.. ..+++.+.+.+.+.+++.||++++++.+.
T Consensus       147 ~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~  226 (401)
T 3vrd_B          147 GGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAA  226 (401)
T ss_dssp             TCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTC
T ss_pred             CCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEE
Confidence            6666655432           3456666666554  78999998877632 22567777777778889999999999999


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc-cc-CCCCCeEEEeeeccc-ccccc
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR-LQ-SSNSSVYAVGDVAAF-PLKLL  305 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~-l~-t~~~~IyA~GD~~~~-~~~~~  305 (479)
                      .++.+.+.  ..+.+.+|+++++|.+++++|.+|+..+.+.++..++|+|.||++ || |++|||||+|||+.. +.+  
T Consensus       227 ~v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~p--  302 (401)
T 3vrd_B          227 VVKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMP--  302 (401)
T ss_dssp             EEEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSC--
T ss_pred             EEEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCC--
Confidence            99874433  357889999999999999999999976666677668899999987 66 699999999999864 322  


Q ss_pred             CceeecccHHHHHHHHHHHHHHHcC
Q 011700          306 GETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       306 g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                            +++..|.+||+++|+||+.
T Consensus       303 ------k~a~~A~~qa~v~A~ni~~  321 (401)
T 3vrd_B          303 ------KSAYSANSQAKVAAAAVVA  321 (401)
T ss_dssp             ------BSHHHHHHHHHHHHHHHHH
T ss_pred             ------chHHHHHHHHHHHHHHHHH
Confidence                  5788899999999999974

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=9.5e-36  Score=310.25  Aligned_cols=291  Identities=23%  Similarity=0.292  Sum_probs=215.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ..+||+||||||||++||.+|++.|++   |+|+|+.....+         ........++.+....+......+.+.++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  278 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQV---------LDTVDIENYISVPKTEGQKLAGALKAHVS  278 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGGG---------TTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCcc---------cccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            358999999999999999999999887   899987421111         00000111111111111111223345566


Q ss_pred             HcCcEEEeCceEEEEECC-----CcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700           83 EHGIELVLGTRVKSADVR-----RKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~-----~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      +++++++.+++|..++.+     ...+.+.+|+++.||+||+|||++|+.|+++|........++++..+...       
T Consensus       279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~-------  351 (521)
T 1hyu_A          279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-------  351 (521)
T ss_dssp             TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-------
T ss_pred             HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-------
Confidence            789999999999999864     45677888889999999999999988877644332223445544432211       


Q ss_pred             hcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCC
Q 011700          158 KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG  236 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g  236 (479)
                       ...+++++|||+|++|+|+|..|++.+.+||++++.+.++.   +    +.+.+.+++ .||++++++.+++++. +++
T Consensus       352 -~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~  422 (521)
T 1hyu_A          352 -LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGS  422 (521)
T ss_dssp             -GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSS
T ss_pred             -hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCC
Confidence             12579999999999999999999999999999999887653   3    335566766 6999999999999987 345


Q ss_pred             cEEEEEeCC---Cc--EEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          237 KVVAVNLRD---GN--RLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       237 ~v~~v~~~~---g~--~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      ++..+.+.+   |+  ++++|.|++++|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.        
T Consensus       423 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~--------  494 (521)
T 1hyu_A          423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPY--------  494 (521)
T ss_dssp             SEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSS--------
T ss_pred             cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCCCc--------
Confidence            665666643   53  68999999999999999888765555 57899999999999999999999998753        


Q ss_pred             cccHHHHHHHHHHHHHHHcC
Q 011700          311 LEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~  330 (479)
                       ..+..|+.+|+.||.+|..
T Consensus       495 -~~~~~A~~~g~~aa~~i~~  513 (521)
T 1hyu_A          495 -KQIIIATGEGAKASLSAFD  513 (521)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             -ceeeehHHhHHHHHHHHHH
Confidence             4577899999999998863

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=3.3e-36  Score=307.64  Aligned_cols=310  Identities=18%  Similarity=0.156  Sum_probs=228.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLT   77 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (479)
                      |+..+||||||||+||++||..|++   .+.+   |+|||+++.+.|. +.+.. +...  ..        ........+
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~~-~~~g--~~--------~~~~~~~~l   65 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNPW-VGVG--WK--------ERDDIAFPI   65 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHHH-HHHT--SS--------CHHHHEEEC
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCccc-cccC--cc--------CHHHHHHHH
Confidence            6556899999999999999999998   5655   9999999865442 21110 0000  00        001122456


Q ss_pred             HhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC--CCeEEecCHHHHHHHHH
Q 011700           78 PKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDA--ENVCYLRDLADANRLVN  155 (479)
Q Consensus        78 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~--~~v~~~~~~~~~~~l~~  155 (479)
                      .+++++.+++++.+ +|+.++++++++.+.+++++.||+||+|||++|..|++   ||.+.  .+.+...+..++.++.+
T Consensus        66 ~~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~i---pG~~~~~~~~~~~~~~~~a~~~~~  141 (437)
T 3sx6_A           66 RHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENV---PGSDPHEGPVQSICTVDHAERAFA  141 (437)
T ss_dssp             HHHHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGS---TTCSTTTSSEECCSSHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccC---CCCCcccCcceecccccHHHHHHH
Confidence            77888899999875 89999999999999999899999999999999988877   55543  35667778888887776


Q ss_pred             HHhcC-CCCCEEEECCChH----H--HHHH----HHHhhCCCe-----EEEEeecCccccccC--CHHHHHHHHHHHHhC
Q 011700          156 VMKSC-SGGNAVVIGGGYI----G--MECA----ASLVINKIN-----VTMVFPEAHCMARLF--TPKIASYYEEYYKSK  217 (479)
Q Consensus       156 ~l~~~-~~~~vvVIGgG~~----g--~E~A----~~l~~~g~~-----Vtlv~~~~~~l~~~~--~~~~~~~~~~~l~~~  217 (479)
                      .++.. .+++++|||+|+.    |  +|+|    ..+.+.|.+     |+++++.+.+.+..+  .++..+.+.+.++++
T Consensus       142 ~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~  221 (437)
T 3sx6_A          142 EYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEE  221 (437)
T ss_dssp             HHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHC
Confidence            55432 2456788898554    4  7777    566677765     999999987633111  145788899999999


Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeCC-----CcEEeccEEEEecCCCCChhhhh-cccccccCcEEEcCcccC-CCCC
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVVGIGIRPNTSLFE-GQLTLEKGGIKVTGRLQS-SNSS  290 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~Vi~a~G~~p~~~l~~-~~~~~~~g~i~Vd~~l~t-~~~~  290 (479)
                      ||++++++.+++++.  ++........+     ++++++|.+++++|++|+..+.+ .++..++|+|.||+++|| ++||
T Consensus       222 gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~  299 (437)
T 3sx6_A          222 GIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYAN  299 (437)
T ss_dssp             TCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTT
T ss_pred             CCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCC
Confidence            999999999999974  32211111233     46799999999999999887665 355447889999999999 9999


Q ss_pred             eEEEeeeccccccccCce---eecccHHHHHHHHHHHHHHHcCCC
Q 011700          291 VYAVGDVAAFPLKLLGET---RRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       291 IyA~GD~~~~~~~~~g~~---~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      |||+|||+..+... +.+   ...+++..|..||+.+|+||....
T Consensus       300 Ifa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l  343 (437)
T 3sx6_A          300 IFAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADL  343 (437)
T ss_dssp             EEECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999876421 111   023578899999999999997543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=4.6e-36  Score=295.41  Aligned_cols=302  Identities=20%  Similarity=0.198  Sum_probs=208.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   81 (479)
                      +++||+|||||++|+++|..|++.|++   |+|||+.....   ......+.........|.+.... .......+.+.+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~---~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMAND---IAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQS   80 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTT---BCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCccc---cCCCceeeeccccccCCCCccCCCHHHHHHHHHHHH
Confidence            357999999999999999999999887   89999821000   00001111111111222221100 011112234556


Q ss_pred             HHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccccccCCCCCCC-CCeEEecCHHHHHHHHHHHh
Q 011700           82 NEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKLEEFGLSGSDA-ENVCYLRDLADANRLVNVMK  158 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~-~~v~~~~~~~~~~~l~~~l~  158 (479)
                      ++.+++++.++ |..++.+.+  ++.+ ++++++||+||+|||++|..|++   +|.+. .+++..+.+.....+...+.
T Consensus        81 ~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  155 (333)
T 1vdc_A           81 ERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSF---VGSGEVLGGFWNRGISACAVCDGAAP  155 (333)
T ss_dssp             HHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCCC---BTCSSSSSCCBTTTEESCHHHHTTSG
T ss_pred             HHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCC---CCccccccccccCcEEEeccCccchh
Confidence            67899999985 888887655  5666 77889999999999999888776   44332 11111111111111111111


Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC-c
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-K  237 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g-~  237 (479)
                      ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..   .+.+.   .+.+++.||++++++.+.+++.++++ +
T Consensus       156 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~~---~~~~~~~gv~i~~~~~v~~i~~~~~~~~  229 (333)
T 1vdc_A          156 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDV  229 (333)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEEEEESSSSSS
T ss_pred             hcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHHH---HHHHhCCCeeEecCCceEEEeCCCCccc
Confidence            12579999999999999999999999999999999887532   33322   24457789999999999999873321 5


Q ss_pred             EEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCc-ccCCCCCeEEEeeeccccccccCceee
Q 011700          238 VVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       238 v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      +..+.+.   +|  +++++|.|++++|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.        
T Consensus       230 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~--------  301 (333)
T 1vdc_A          230 LGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY--------  301 (333)
T ss_dssp             EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC--------
T ss_pred             eeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCc--------
Confidence            5456554   45  579999999999999999988766665 4789999997 6899999999999998642        


Q ss_pred             cccHHHHHHHHHHHHHHHcC
Q 011700          311 LEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~  330 (479)
                       ..+..|..+|+.||.+|..
T Consensus       302 -~~~~~A~~~g~~aa~~i~~  320 (333)
T 1vdc_A          302 -RQAITAAGTGCMAALDAEH  320 (333)
T ss_dssp             -CCHHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHhHHHHHHHHHH
Confidence             4577899999999998864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.3e-36  Score=294.92  Aligned_cols=289  Identities=22%  Similarity=0.286  Sum_probs=207.0

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccccc-CCcccCCCHhH
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCV-GANEERLTPKW   80 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   80 (479)
                      +.++||+|||||+||+++|..|++.|++   |+|||+....        ..+........+|.+.... .......+.++
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~g--------g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   80 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTSFG--------GALMTTTDVENYPGFRNGITGPELMDEMREQ   80 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSSCS--------CGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC--------CceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999999887   8999975321        0111111111223221100 01111233445


Q ss_pred             HHHcCcEEEeCceEEEEECC-CcEE-EeCCCcEEEeceEEeecCCCcccccccCCCCCC---CCCeEEecCHHHHHHHHH
Q 011700           81 YNEHGIELVLGTRVKSADVR-RKTL-VTATGETISYKILIIATGARALKLEEFGLSGSD---AENVCYLRDLADANRLVN  155 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~-~~~v-~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~---~~~v~~~~~~~~~~~l~~  155 (479)
                      +.+.+++++.++ +..++.. ..++ .+.+++++.||+||+|||+.|..|++   +|.+   ...++++....+      
T Consensus        81 ~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i---~g~~~~~~~~~~~~~~~~~------  150 (335)
T 2a87_A           81 ALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQV---PGEQELLGRGVSSCATCDG------  150 (335)
T ss_dssp             HHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCC---THHHHTBTTTEESCHHHHG------
T ss_pred             HHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCC---CchHhccCCceEEeeccch------
Confidence            667899999985 8888873 2456 67778899999999999999887766   4422   123332222111      


Q ss_pred             HHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700          156 VMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  235 (479)
Q Consensus       156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  235 (479)
                      .+  ..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+..   .+.+.   .+.+++.||++++++.+.+++.+  
T Consensus       151 ~~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~~---~~~~~~~gV~v~~~~~v~~i~~~--  220 (335)
T 2a87_A          151 FF--FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIML---DRARNNDKIRFLTNHTVVAVDGD--  220 (335)
T ss_dssp             GG--GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTHH---HHHHHCTTEEEECSEEEEEEECS--
T ss_pred             hh--cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHHH---HHHhccCCcEEEeCceeEEEecC--
Confidence            11  2579999999999999999999999999999999887643   22222   23456789999999999999863  


Q ss_pred             CcEEEEEeC---CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCc-ccCCCCCeEEEeeeccccccccCce
Q 011700          236 GKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGET  308 (479)
Q Consensus       236 g~v~~v~~~---~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~-l~t~~~~IyA~GD~~~~~~~~~g~~  308 (479)
                      +.+..+.+.   +|  +++++|.|++++|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.      
T Consensus       221 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~------  294 (335)
T 2a87_A          221 TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY------  294 (335)
T ss_dssp             SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC------
T ss_pred             CcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccH------
Confidence            232234443   44  579999999999999999988766665 5789999986 6899999999999998642      


Q ss_pred             eecccHHHHHHHHHHHHHHHcC
Q 011700          309 RRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                         ..+..|..+|+.||.+|..
T Consensus       295 ---~~~~~A~~~g~~aA~~i~~  313 (335)
T 2a87_A          295 ---RQAVTAAGSGCAAAIDAER  313 (335)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhHHHHHHHHHH
Confidence               4577889999999998863

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=2.2e-35  Score=299.14  Aligned_cols=290  Identities=19%  Similarity=0.243  Sum_probs=226.9

Q ss_pred             CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY   81 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (479)
                      +||||||||+||+++|.+|++   .|.+   |+|||+++...|. +.+.....   ....        ..+....+.+++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~-~~~~~~~~---~~~~--------~~~~~~~~~~~~   66 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFR-PALPHVAI---GVRD--------VDELKVDLSEAL   66 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEEC-CSSCCCCS---SCCC--------CCCEEEEHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceec-cchhhccc---CCcC--------HHHHHHHHHHHH
Confidence            689999999999999999999   6665   9999999854332 22221000   0000        011123455667


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEeCCCc----EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHH
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVTATGE----TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVM  157 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~~~g~----~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l  157 (479)
                      ++.+++++.+ +|..++.+.+.+.+.+++    ++.||+||+|||++|..|++   +|.+. ..+...+..++..+.+.+
T Consensus        67 ~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~i---pG~~~-~~~~~~~~~~~~~~~~~l  141 (409)
T 3h8l_A           67 PEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELV---KGWDK-YGYSVCEPEFATKLREKL  141 (409)
T ss_dssp             GGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGS---BTHHH-HCEESSSTTHHHHHHHHH
T ss_pred             hhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCC---CChhh-cCcCcCCHHHHHHHHHHH
Confidence            7889999988 999999999999887765    49999999999999988776   55432 456677788888888877


Q ss_pred             hcCCCCCEEEECCCh-------------------------HHHHHHH----HHhhCC----CeEEEEeecCccccccCCH
Q 011700          158 KSCSGGNAVVIGGGY-------------------------IGMECAA----SLVINK----INVTMVFPEAHCMARLFTP  204 (479)
Q Consensus       158 ~~~~~~~vvVIGgG~-------------------------~g~E~A~----~l~~~g----~~Vtlv~~~~~~l~~~~~~  204 (479)
                      .... ++++|||+|+                         .++|+|.    .+.+.|    .+|+++++.+ +++. +++
T Consensus       142 ~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~  218 (409)
T 3h8l_A          142 ESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSP  218 (409)
T ss_dssp             HHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCH
T ss_pred             HHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCH
Confidence            7643 5667999992                         4677774    455677    4899999988 6664 789


Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc--ccccccCcEEEcC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG--QLTLEKGGIKVTG  282 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~g~i~Vd~  282 (479)
                      ++.+.+.+.++++||+++++++|++++.  +    .+.+.+|+++++|.|++++|++|+..+.+.  .+..++|+|.||+
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~  292 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL  292 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBT
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCc
Confidence            9999999999999999999999999964  2    377889999999999999999999766555  3444678899999


Q ss_pred             cccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          283 RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       283 ~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ++|| ++|||||+|||+..+.+        ..+..|..||++||+||.+.
T Consensus       293 ~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~  334 (409)
T 3h8l_A          293 NMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANR  334 (409)
T ss_dssp             TSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHH
Confidence            9999 99999999999986433        56788999999999999754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=2.8e-34  Score=286.66  Aligned_cols=303  Identities=15%  Similarity=0.206  Sum_probs=207.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCC-C-CCCcccccccCCCCC---CCCCCcc----------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPVAP-Y-ERPALSKGYLLPEAP---ARLPSFH----------   66 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~~~-~-~~~~l~~~~~~~~~~---~~~~~~~----------   66 (479)
                      +++||+|||||++|+++|.+|++.|. +   |+|||+++... + ..+... .++.+...   ..++.+.          
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~~Gg~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~   78 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGTVGHSFKHWPKST-RTITPSFTSNGFGMPDMNAISMDTSPAF   78 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSTTHHHHTSCTTC-BCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCCCCCccccCcccc-cccCcchhcccCCchhhhhccccccccc
Confidence            46899999999999999999999887 5   99999986100 0 000000 00000000   0000000          


Q ss_pred             -c----ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCC
Q 011700           67 -T----CVGANEERLTPKWYNEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGLSGSDAE  139 (479)
Q Consensus        67 -~----~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~  139 (479)
                       .    .........+..++++.+++++.+++|++++.++  ..|.+.++ ++.||+||+|||+.+. |.+   |+   .
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~i---p~---~  150 (369)
T 3d1c_A           79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PKK---PF---K  150 (369)
T ss_dssp             HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BCC---CS---S
T ss_pred             cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cCC---CC---C
Confidence             0    0000000112334567899999998999998763  46666665 6899999999999865 444   44   2


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHHHHHHHHHH
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIASYYEEY  213 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~~~~~~~  213 (479)
                      .+++...+.+.       ...++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++.      .+++...+.+.+.
T Consensus       151 ~~~~~~~~~~~-------~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~  223 (369)
T 3d1c_A          151 YGIHYSEIEDF-------DNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV  223 (369)
T ss_dssp             SCEEGGGCSCG-------GGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHH
T ss_pred             ceechhhcCCh-------hhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHH
Confidence            34443332221       1225679999999999999999999999999999999887642      1467788899999


Q ss_pred             HHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEe-ccEEEEecCCCCChhhhhc-ccccccCcEEEcCc-ccCCCC
Q 011700          214 YKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEG-QLTLEKGGIKVTGR-LQSSNS  289 (479)
Q Consensus       214 l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~Vi~a~G~~p~~~l~~~-~~~~~~g~i~Vd~~-l~t~~~  289 (479)
                      +++.| |++++++.|.+++.+ ++. ..+.+.+|+++. +|.|++++|++|+++++.. .+..++|+|.||++ ++|++|
T Consensus       224 l~~~g~v~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~  301 (369)
T 3d1c_A          224 IKQGARIEMNVHYTVKDIDFN-NGQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYP  301 (369)
T ss_dssp             HHTTCCEEEECSCCEEEEEEE-TTE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSST
T ss_pred             HhhCCcEEEecCcEEEEEEec-CCc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCC
Confidence            99997 999999999999752 232 357788888775 5999999999999965543 34445677999985 778999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      +|||+|||+..+....      ..+..+..||+.+|++|.+..
T Consensus       302 ~v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~  338 (369)
T 3d1c_A          302 NIFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQRE  338 (369)
T ss_dssp             TEEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred             CeEEeccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence            9999999998754322      345567888999999998654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=2.7e-34  Score=284.84  Aligned_cols=299  Identities=18%  Similarity=0.240  Sum_probs=198.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccccccCCCCCCCCCCcccccC-------Ccc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSKGYLLPEAPARLPSFHTCVG-------ANE   73 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~   73 (479)
                      +++||+|||||++|+++|..|+++|++   |+|||+++...  +........+..+.....++.+.....       ...
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEV   78 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence            458999999999999999999999887   99999986421  000000000000111111121111100       011


Q ss_pred             cCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCC--CcccccccCCCCCCC--CCeEEecC
Q 011700           74 ERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGA--RALKLEEFGLSGSDA--ENVCYLRD  146 (479)
Q Consensus        74 ~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~--~~~~~~~~g~~g~~~--~~v~~~~~  146 (479)
                      ...+.+++++.+++++.+++|.+++.+++.   +.+.++ ++.||+||+|||.  .|..|++   +|.+.  ...++...
T Consensus        79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~~---~g~~~~~~~~~~~~~  154 (357)
T 4a9w_A           79 LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPEY---QGLESFAGIQLHSAH  154 (357)
T ss_dssp             HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCCC---TTGGGCCSEEEEGGG
T ss_pred             HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCCC---CCccccCCcEEEecc
Confidence            122344556789999999999999887765   555565 8999999999995  5656666   44321  11222222


Q ss_pred             HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-CccccccC-CHHHHHHHHHHHH---------
Q 011700          147 LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMARLF-TPKIASYYEEYYK---------  215 (479)
Q Consensus       147 ~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~~~-~~~~~~~~~~~l~---------  215 (479)
                      +.+..       ...+++++|||+|++|+|+|..|.+.+ +|+++.+. +.+++..+ ...+.+.+.+.++         
T Consensus       155 ~~~~~-------~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (357)
T 4a9w_A          155 YSTPA-------PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPD  226 (357)
T ss_dssp             CCCSG-------GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------
T ss_pred             CCChh-------hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCC
Confidence            21111       125799999999999999999999998 69999988 55555432 2344333333332         


Q ss_pred             -------------------hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccccc
Q 011700          216 -------------------SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTLEK  275 (479)
Q Consensus       216 -------------------~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~~~  275 (479)
                                         +.|+ +..+..+.+++.  +    .+.+.+|+++++|.|++++|++|++++++. ++..++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~--~----~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~  299 (357)
T 4a9w_A          227 LPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP--T----GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQ  299 (357)
T ss_dssp             -------CBCCCHHHHHHHHTTC-CCEECCCSEEET--T----EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTT
T ss_pred             cccccccCcccChhHHHHHhcCc-eEEecCcceEeC--C----eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCC
Confidence                               3444 445556667653  2    478899999999999999999999888765 555567


Q ss_pred             CcEEEcCc--ccCCCCCeEEEe--eeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          276 GGIKVTGR--LQSSNSSVYAVG--DVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       276 g~i~Vd~~--l~t~~~~IyA~G--D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      |+|.||++  ++|+.|+|||+|  ||+....         ..+..|..||+.+|.+|....
T Consensus       300 G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~~~l  351 (357)
T 4a9w_A          300 GQVEVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVTAYC  351 (357)
T ss_dssp             SCBCBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHHHHT
T ss_pred             CCccccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHHHHH
Confidence            89999999  999999999999  5555221         334568899999999987543

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=4.5e-33  Score=284.50  Aligned_cols=282  Identities=20%  Similarity=0.285  Sum_probs=198.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+||||||||++||..|++.|++   |+|||+.+...        +.+.    ..+|.+..  .........+++++
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~~--~~~~~~~~~~~l~~  184 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMG--------GLLV----YGIPGFKL--EKSVVERRVKLLAD  184 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSCS--------THHH----HTSCTTTS--CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCC--------Ceee----ecCCCccC--CHHHHHHHHHHHHH
Confidence            57999999999999999999999987   99999986421        1110    01122211  00111233466788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHHHHHH--H----
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADANRLVN--V----  156 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~--~----  156 (479)
                      .|++++.++.+.      +.+.+.+. .+.||+||||||+. |+.+++   +|.+.+++++..++........  .    
T Consensus       185 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~i---pG~~~~gv~~a~~~l~~~~~~~~~~~~~~  254 (456)
T 2vdc_G          185 AGVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIKA---PGSGLGNIVAALDYLTTSNKVSLGDTVEA  254 (456)
T ss_dssp             TTCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTTC---SCCTTTTEEEHHHHHHHHHHHHCTTTCSS
T ss_pred             CCcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCCC---CCCcCCCcEEHHHHHHHhhhhhccccccc
Confidence            899999986542      22223222 25799999999997 555555   7777677776443322111110  0    


Q ss_pred             ----HhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcc-ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          157 ----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       157 ----l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                          .....+++|+|||+|++|+|+|..+.+.|. +||++.|++.. ++. .+.+     .+.+++.||++++++.+.++
T Consensus       255 ~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~i  328 (456)
T 2vdc_G          255 YENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEGF  328 (456)
T ss_dssp             CCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCCE
T ss_pred             ccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceEE
Confidence                011357899999999999999999999997 59999998875 553 3333     24567789999999999998


Q ss_pred             EEcCCCcEEEEEe---------C---------CC--cEEeccEEEEecCCCCChh--hhh-ccccc-ccCcEEEcCc-cc
Q 011700          231 DVDSNGKVVAVNL---------R---------DG--NRLPTDMVVVGIGIRPNTS--LFE-GQLTL-EKGGIKVTGR-LQ  285 (479)
Q Consensus       231 ~~~~~g~v~~v~~---------~---------~g--~~i~~D~Vi~a~G~~p~~~--l~~-~~~~~-~~g~i~Vd~~-l~  285 (479)
                      ..  ++++..+.+         .         +|  +++++|.||+|+|++|++.  +++ .++.. ++|+|.||++ +|
T Consensus       329 ~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~  406 (456)
T 2vdc_G          329 TG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKM  406 (456)
T ss_dssp             EE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCB
T ss_pred             eC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCc
Confidence            75  343322221         1         23  4799999999999999875  444 35655 5789999997 99


Q ss_pred             CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          286 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       286 t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      |+.|+|||+|||+..+          .++..|+.+|+.||.+|..
T Consensus       407 Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~  441 (456)
T 2vdc_G          407 TNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHA  441 (456)
T ss_dssp             CSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHH
Confidence            9999999999998765          4578899999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.98  E-value=3.1e-32  Score=303.89  Aligned_cols=311  Identities=19%  Similarity=0.283  Sum_probs=214.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+||+||||||||++||.+|+++|++  +|+|||+++....        .+.    ..+|.+...  ........+++++
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG--------~~~----~~ip~~~~~--~~~~~~~~~~~~~  250 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGG--------LST----SEIPQFRLP--YDVVNFEIELMKD  250 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCST--------HHH----HTSCTTTSC--HHHHHHHHHHHHT
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCc--------ccc----ccCCcccCC--HHHHHHHHHHHHH
Confidence            47999999999999999999999983  3999999853211        110    011221110  0011122456778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC-CcccccccCCCCCC-CCCeEEecCHHHHHHHHHHHh---
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA-RALKLEEFGLSGSD-AENVCYLRDLADANRLVNVMK---  158 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~-~~~~~~~~g~~g~~-~~~v~~~~~~~~~~~l~~~l~---  158 (479)
                      .|++++.++.+.     .+.+.+.+++++.||+||||||+ .|+.++++  +|.+ .+++++..++...  +.+...   
T Consensus       251 ~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~--~G~~~~~gv~~a~~~L~~--~~~~~~~~~  321 (1025)
T 1gte_A          251 LGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIF--QGLTQDQGFYTSKDFLPL--VAKSSKAGM  321 (1025)
T ss_dssp             TTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGG--TTCCTTTTEEEHHHHHHH--HHHHHCBTT
T ss_pred             CCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCC--CCCCCCCCEEEhHHHHHH--HHhhccccc
Confidence            899999987652     13344445555789999999999 58776652  3332 3567654432211  111100   


Q ss_pred             -------cCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc-cccccCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          159 -------SCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       159 -------~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                             ...+++|+|||+|++|+|+|..+.++|. +||++++.++ .++. +++++     +.+++.||++++++.+.+
T Consensus       322 ~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~  395 (1025)
T 1gte_A          322 CACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRK  395 (1025)
T ss_dssp             BSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEE
T ss_pred             ccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceE
Confidence                   1135799999999999999999999996 8999999884 4443 45544     356778999999999999


Q ss_pred             EEEcCCCcEEEEEeC------CC---------cEEeccEEEEecCCCCC-hhhhhc--cccc-ccCcEEEcC-cccCCCC
Q 011700          230 FDVDSNGKVVAVNLR------DG---------NRLPTDMVVVGIGIRPN-TSLFEG--QLTL-EKGGIKVTG-RLQSSNS  289 (479)
Q Consensus       230 i~~~~~g~v~~v~~~------~g---------~~i~~D~Vi~a~G~~p~-~~l~~~--~~~~-~~g~i~Vd~-~l~t~~~  289 (479)
                      +.. +++++..+++.      +|         +++++|.|++|+|++|+ ..+...  ++.. ++|+|.||+ ++||+.|
T Consensus       396 i~~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~  474 (1025)
T 1gte_A          396 VIV-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEP  474 (1025)
T ss_dssp             EEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSST
T ss_pred             EEc-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCC
Confidence            986 46666656542      22         36899999999999864 556543  5666 468899997 8999999


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC------CCCCCCCCCCeEEE--eecCcceEeec
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP------DKTDKFDYLPFFYS--RVFTLSWQFYG  356 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~------~~~~~~~~~p~~~~--~~~~~~~~~~G  356 (479)
                      +|||+|||+..+          ..+..|+.||+.||.+|.+.      .....++.+|++|+  ...+++....|
T Consensus       475 ~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G  539 (1025)
T 1gte_A          475 WVFAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAG  539 (1025)
T ss_dssp             TEEECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETT
T ss_pred             CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeecc
Confidence            999999999864          35678999999999999741      11124567888776  33444444444

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.98  E-value=3.3e-32  Score=301.64  Aligned_cols=283  Identities=18%  Similarity=0.178  Sum_probs=206.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++|||||||||||++||.+|++.|++   |+|||+++... . .+..     . ....++...   .........+.+.+
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~G-G-~~~~-----~-~k~~i~~~~---~~~~~~~~~~~l~~  193 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAG-G-TLLD-----T-AGEQIDGMD---SSAWIEQVTSELAE  193 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-G-GGGG-----S-SCCEETTEE---HHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCC-c-eecc-----C-CccccCCCC---HHHHHHHHHHHHhh
Confidence            57999999999999999999999986   99999986421 1 0110     0 000011100   00000111223444


Q ss_pred             -cCcEEEeCceEEEEECCCcEEEe-----------------CCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEec
Q 011700           84 -HGIELVLGTRVKSADVRRKTLVT-----------------ATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLR  145 (479)
Q Consensus        84 -~gv~~~~~~~v~~i~~~~~~v~~-----------------~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~  145 (479)
                       .+++++.+++|..++.++....+                 .++.++.||+||||||+.|+.|++   ||.+.+++++..
T Consensus       194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~i---pG~~~~gv~~~~  270 (965)
T 2gag_A          194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVF---ENNDRPGIMLAG  270 (965)
T ss_dssp             STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCC---BTCCSTTEEEHH
T ss_pred             cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCC---CCCCCCCEEEhH
Confidence             48999999899998866532211                 112368999999999999988876   777777887755


Q ss_pred             CHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          146 DLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       146 ~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ++.   .+.+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+++++     .     .+.+++.||++++++
T Consensus       271 ~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~  337 (965)
T 2gag_A          271 AVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGS  337 (965)
T ss_dssp             HHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETE
T ss_pred             HHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCC
Confidence            432   222222223568999999999999999999999999999999887643     1     456788999999999


Q ss_pred             ceEEEEEcCCCcEEEEEeCC-------C--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCccc-----CCCCCe
Q 011700          226 VLSSFDVDSNGKVVAVNLRD-------G--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQ-----SSNSSV  291 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~-------g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~-----t~~~~I  291 (479)
                      .+.+++.++++++..+.+.+       |  +++++|.|++++|++|+++++..    .+++|.||++++     |++|+|
T Consensus       338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~i~vd~~~~~~v~~ts~p~I  413 (965)
T 2gag_A          338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGKLDWDTTIHAFVPADAVANQ  413 (965)
T ss_dssp             EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCCEEEETTTTEEEECSCCTTE
T ss_pred             EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCcEEEcCcccccccCCCCCCE
Confidence            99999863245555666654       4  67999999999999999987653    257899999988     899999


Q ss_pred             EEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          292 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       292 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ||+|||++.+.           ...|..||+.||.+|.+.
T Consensus       414 yAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~  442 (965)
T 2gag_A          414 HLAGAMTGRLD-----------TASALSTGAATGAAAATA  442 (965)
T ss_dssp             EECGGGGTCCS-----------HHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCchh-----------HHHHHHHHHHHHHHHHHH
Confidence            99999998642           347899999999999753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.97  E-value=1.7e-32  Score=280.85  Aligned_cols=293  Identities=15%  Similarity=0.176  Sum_probs=200.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      .++||+||||||||+++|..|+++| +..+|+|||+++.. |..  +..+.        .|.+..  .......+.++++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg~--~~~g~--------~p~~~~--~~~~~~~~~~~~~   70 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FGL--VRFGV--------APDHPE--VKNVINTFTQTAR   70 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CTH--HHHTS--------CTTCGG--GGGHHHHHHHHHT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cce--eeccc--------CCCCcc--HHHHHHHHHHHHH
Confidence            3589999999999999999999987 23459999998743 321  11110        111110  0111122345666


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCc-ccccccCCCCCCCCCeEEecCHHHHHHHH---HHHh
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARA-LKLEEFGLSGSDAENVCYLRDLADANRLV---NVMK  158 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~~~g~~g~~~~~v~~~~~~~~~~~l~---~~l~  158 (479)
                      +.+++++.++.+      .+.+.+.+ .++.||+||||||+.| +.|++   ||.+.+++++.+++.....-.   ..+.
T Consensus        71 ~~gv~~~~~~~v------~~~V~~~~-~~~~~d~lVlAtGs~~~~~~~i---pG~~~~gv~~~~~~~~~~~~~~d~~~~~  140 (460)
T 1cjc_A           71 SDRCAFYGNVEV------GRDVTVQE-LQDAYHAVVLSYGAEDHQALDI---PGEELPGVFSARAFVGWYNGLPENRELA  140 (460)
T ss_dssp             STTEEEEBSCCB------TTTBCHHH-HHHHSSEEEECCCCCEECCCCC---TTTTSTTEEEHHHHHHHHTTCGGGTTCC
T ss_pred             hCCcEEEeeeEE------eeEEEecc-ceEEcCEEEEecCcCCCCCCCC---CCCCCCcEEEHHHHHHHhhcCccccccc
Confidence            789999988654      12343333 3468999999999995 66665   776667787765442110000   0001


Q ss_pred             -cCCCCCEEEECCChHHHHHHHHHh--------------------hCCC-eEEEEeecCccc--------------cc--
Q 011700          159 -SCSGGNAVVIGGGYIGMECAASLV--------------------INKI-NVTMVFPEAHCM--------------AR--  200 (479)
Q Consensus       159 -~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~g~-~Vtlv~~~~~~l--------------~~--  200 (479)
                       ...+++++|||+|++|+|+|..|.                    +.+. +|+++.|++.+.              +.  
T Consensus       141 ~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~  220 (460)
T 1cjc_A          141 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTR  220 (460)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCce
Confidence             124789999999999999999998                    5676 799999987652              21  


Q ss_pred             ------cC----------CHH---HHHHHHHHHHh--------------CCcEEEcCCceEEEEEcCCC-cEEEEEeC--
Q 011700          201 ------LF----------TPK---IASYYEEYYKS--------------KGVKFVKGTVLSSFDVDSNG-KVVAVNLR--  244 (479)
Q Consensus       201 ------~~----------~~~---~~~~~~~~l~~--------------~GV~i~~~~~v~~i~~~~~g-~v~~v~~~--  244 (479)
                            .+          +..   +.+.+.+.+++              +||++++++.+.+|..++++ ++..+.+.  
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~  300 (460)
T 1cjc_A          221 PMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVT  300 (460)
T ss_dssp             EECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEE
T ss_pred             eEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEE
Confidence                  00          110   23444455555              89999999999999874335 55555543  


Q ss_pred             -------------CC--cEEeccEEEEecCCCCChhhhhccc-cc-ccCcEEEcCcccCC-CCCeEEEeeeccccccccC
Q 011700          245 -------------DG--NRLPTDMVVVGIGIRPNTSLFEGQL-TL-EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       245 -------------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~-~~-~~g~i~Vd~~l~t~-~~~IyA~GD~~~~~~~~~g  306 (479)
                                   +|  +++++|.|++++|++|++ +  .++ .+ ++|+|.||+++||+ +|+|||+|||+..+.    
T Consensus       301 ~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~----  373 (460)
T 1cjc_A          301 RLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT----  373 (460)
T ss_dssp             EEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT----
T ss_pred             EEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC----
Confidence                         34  579999999999999998 3  456 55 56889999999998 799999999997553    


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcCC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                           ..+..|+.+|+.+|.+|++.
T Consensus       374 -----~~i~~a~~~g~~aa~~i~~~  393 (460)
T 1cjc_A          374 -----GVITTTMTDSFLTGQILLQD  393 (460)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccHHHHHHHHHHHHHHHHHH
Confidence                 23567899999999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.97  E-value=1.3e-30  Score=267.83  Aligned_cols=285  Identities=12%  Similarity=0.116  Sum_probs=196.6

Q ss_pred             CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-Cc-cc-----ccccCCCC-------CCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAP----YER-PA-LS-----KGYLLPEA-------PARLP   63 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~----~~~-~~-l~-----~~~~~~~~-------~~~~~   63 (479)
                      +||+|||||+||++||..|++   .|.+..+|+|||+++...    |.. +. ..     ...+....       ...++
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            799999999999999999999   887644589999986421    110 00 00     00000000       00011


Q ss_pred             Ccccc-----------cCCcccCCCHhHHHHcCcE--EEeCceEEEEECCCc----EEEeCC---C--cEEEeceEEeec
Q 011700           64 SFHTC-----------VGANEERLTPKWYNEHGIE--LVLGTRVKSADVRRK----TLVTAT---G--ETISYKILIIAT  121 (479)
Q Consensus        64 ~~~~~-----------~~~~~~~~~~~~~~~~gv~--~~~~~~v~~i~~~~~----~v~~~~---g--~~~~~d~lviAt  121 (479)
                      .+...           ........+.+++++.+++  ++.+++|..++....    +|.+.+   |  .++.||+||+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            11100           0000111223344566887  888889999986554    666644   3  578999999999


Q ss_pred             C--CCcccccccCCCCCCC--CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          122 G--ARALKLEEFGLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       122 G--~~~~~~~~~g~~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      |  +.|+.|++   +|.+.  ..+++..++.+..       ...+++|+|||+|++|+|+|..|++.|.+|+++++++.+
T Consensus       163 G~~s~p~~p~i---pG~~~~~g~~~hs~~~~~~~-------~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          163 GHFSTPYVPEF---EGFEKFGGRILHAHDFRDAL-------EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             CSSSSBCCCCC---BTTTTCCSEEEEGGGCCCGG-------GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCCCCCccCCC---CCcccCCceEEehhhhCCHh-------HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            9  88988877   44432  2244444332221       125899999999999999999999999999999999887


Q ss_pred             ccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc--cccccc
Q 011700          198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG--QLTLEK  275 (479)
Q Consensus       198 l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~--~~~~~~  275 (479)
                      ++..+             ..||+++  ..|++++.  +    .|.+.||+++++|.||+|+|++|+.+++..  ++..++
T Consensus       233 ~~~~~-------------~~~V~~~--~~V~~i~~--~----~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~  291 (464)
T 2xve_A          233 MGYKW-------------PENWDER--PNLVRVDT--E----NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN  291 (464)
T ss_dssp             CCCCC-------------CTTEEEC--SCEEEECS--S----EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCS
T ss_pred             CCCCC-------------CCceEEc--CCeEEEeC--C----EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCC
Confidence            76422             2578887  67888853  2    477899999999999999999999988764  345444


Q ss_pred             C-cEEEcC---cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          276 G-GIKVTG---RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       276 g-~i~Vd~---~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      + .+ +|.   .++|+.|+|||+|||...           ..+..|..||+.++++|.+..
T Consensus       292 ~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~  340 (464)
T 2xve_A          292 RLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL  340 (464)
T ss_dssp             SSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred             Cccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence            4 44 443   367899999999998863           246788999999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.97  E-value=1.5e-32  Score=280.91  Aligned_cols=288  Identities=22%  Similarity=0.268  Sum_probs=197.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTK-R------GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEER   75 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~------g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (479)
                      +++||+||||||||++||..|++ +      +.+   |+|||+++. +|...  ..+.        .|...  .......
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~-~gg~~--~~gv--------~p~~~--~~~~~~~   65 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPT-PWGLV--RSGV--------APDHP--KIKSISK   65 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSS-CSTHH--HHTS--------CTTCT--GGGGGHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCC-CCCcc--cccc--------CCCCC--CHHHHHH
Confidence            46899999999999999999999 7      665   999999864 33211  1111        01110  0011112


Q ss_pred             CCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCC-cccccccCCCCCCCCCeEEecCHHHHH---
Q 011700           76 LTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGAR-ALKLEEFGLSGSDAENVCYLRDLADAN---  151 (479)
Q Consensus        76 ~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~-~~~~~~~g~~g~~~~~v~~~~~~~~~~---  151 (479)
                      .+.+++++.+++++.+..+      ++.+.+.++ ++.||+||||||+. |+.+++   ||.+.+++++.+++....   
T Consensus        66 ~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~i---pG~~~~gv~~~~~~~~~~~~~  135 (456)
T 1lqt_A           66 QFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLNI---PGEDLPGSIAAVDFVGWYNAH  135 (456)
T ss_dssp             HHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCC---TTTTSTTEEEHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCCC---CCCCCCCcEEHHHHHhhhhcC
Confidence            3345566789999987542      233444444 47899999999997 666665   676666777655432110   


Q ss_pred             -HHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--------------------C-CeEEEEeecCccccccCC-HH---
Q 011700          152 -RLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--------------------K-INVTMVFPEAHCMARLFT-PK---  205 (479)
Q Consensus       152 -~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--------------------g-~~Vtlv~~~~~~l~~~~~-~~---  205 (479)
                       .+...+....+++++|||+|++|+|+|..|.+.                    + .+|+++.|++.+... |+ ++   
T Consensus       136 ~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~-f~~~elre  214 (456)
T 1lqt_A          136 PHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA-FTTLELRE  214 (456)
T ss_dssp             GGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC-CCHHHHHH
T ss_pred             cccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhc-cChHHHHH
Confidence             000011112478999999999999999999874                    5 499999998876543 22 11   


Q ss_pred             ---------------H------------------HHHHHHHHHh------CCcEEEcCCceEEEEEcCCCcEEEEEeC--
Q 011700          206 ---------------I------------------ASYYEEYYKS------KGVKFVKGTVLSSFDVDSNGKVVAVNLR--  244 (479)
Q Consensus       206 ---------------~------------------~~~~~~~l~~------~GV~i~~~~~v~~i~~~~~g~v~~v~~~--  244 (479)
                                     +                  .+.+.+.+++      +||++++++.+.+|..  ++++..+.+.  
T Consensus       215 l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~~~  292 (456)
T 1lqt_A          215 LADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLGRN  292 (456)
T ss_dssp             GGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEEEE
T ss_pred             hhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEEEE
Confidence                           1                  2445555555      7999999999999986  3443334443  


Q ss_pred             --------------CC--cEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCccc-CCCCCeEEEeeeccccccccC
Q 011700          245 --------------DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       245 --------------~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~-t~~~~IyA~GD~~~~~~~~~g  306 (479)
                                    +|  ++++||.|++++|++|++ +  .++.+ ++|+|.||+++| |+.|+|||+|||+..+..   
T Consensus       293 ~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~---  366 (456)
T 1lqt_A          293 ELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTG---  366 (456)
T ss_dssp             EEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCS---
T ss_pred             EecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCch---
Confidence                          34  469999999999999998 3  34555 568899999999 799999999999976532   


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcCC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                            .+..|+.+|..+|.+|++.
T Consensus       367 ------~i~~a~~~g~~~a~~i~~~  385 (456)
T 1lqt_A          367 ------VIGTNKKDAQDTVDTLIKN  385 (456)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHH
T ss_pred             ------hHHHHHHHHHHHHHHHHHH
Confidence                  2446888999999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=1.2e-30  Score=268.66  Aligned_cols=310  Identities=13%  Similarity=0.086  Sum_probs=194.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC-----CCCCcEEEEcCCCCCCCCCCcccccccC----------CCCCCCCCCcc--
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG-----VPPGELCIISEEPVAPYERPALSKGYLL----------PEAPARLPSFH--   66 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g-----~~~~~V~lie~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~--   66 (479)
                      .+||||||||+||+++|..|+++|     .+   |+|||+++...|....+..+...          .........+.  
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~  106 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY  106 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence            469999999999999999999988     66   99999998655433211111000          00000000000  


Q ss_pred             -cccC---------------CcccCCCHhHHHHcCcEEEeCceEEEEECC---Cc----EEEeCCCc----EEEeceEEe
Q 011700           67 -TCVG---------------ANEERLTPKWYNEHGIELVLGTRVKSADVR---RK----TLVTATGE----TISYKILII  119 (479)
Q Consensus        67 -~~~~---------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~---~~----~v~~~~g~----~~~~d~lvi  119 (479)
                       ...+               ......+..+.++.+++++.+++|..++.+   ++    +|.+.++.    ++.||+||+
T Consensus       107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl  186 (463)
T 3s5w_A          107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV  186 (463)
T ss_dssp             HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred             hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence             0000               000011112223457899999999999875   43    55555654    899999999


Q ss_pred             ecCCCcccccccCCCCCCCC-CeEEecCHHH-HHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecC
Q 011700          120 ATGARALKLEEFGLSGSDAE-NVCYLRDLAD-ANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA  195 (479)
Q Consensus       120 AtG~~~~~~~~~g~~g~~~~-~v~~~~~~~~-~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~  195 (479)
                      |||+.|..|+.  +++.... .+++...+.+ ...+....  ..+++|+|||+|.+|+|+|..|.+.  +.+|+++.|.+
T Consensus       187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~  262 (463)
T 3s5w_A          187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS  262 (463)
T ss_dssp             CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            99999887763  1333222 4555444322 22221100  1478999999999999999999998  99999999998


Q ss_pred             cccccc-------------------CCHHHHHHHHHHHHh--------------------------CCcEEEcCCceEEE
Q 011700          196 HCMARL-------------------FTPKIASYYEEYYKS--------------------------KGVKFVKGTVLSSF  230 (479)
Q Consensus       196 ~~l~~~-------------------~~~~~~~~~~~~l~~--------------------------~GV~i~~~~~v~~i  230 (479)
                      .+++..                   ++++....+.+.+..                          .||++++++.|+++
T Consensus       263 ~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v  342 (463)
T 3s5w_A          263 ALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERA  342 (463)
T ss_dssp             SCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEE
T ss_pred             CCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEE
Confidence            775521                   223333333333222                          69999999999999


Q ss_pred             EEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCC--hhhhhcccccccCcEEEcCcccCC-----CCCeEEEeeec
Q 011700          231 DVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN--TSLFEGQLTLEKGGIKVTGRLQSS-----NSSVYAVGDVA  298 (479)
Q Consensus       231 ~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~--~~l~~~~~~~~~g~i~Vd~~l~t~-----~~~IyA~GD~~  298 (479)
                      +.++ +. ..+.+.   +|+  ++++|.||+|+|++|+  .+++....... |+|.||+++|+.     .|+|||+|||.
T Consensus       343 ~~~~-~~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~  419 (463)
T 3s5w_A          343 TATA-QG-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQ  419 (463)
T ss_dssp             EEET-TE-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred             EecC-CE-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCc
Confidence            8743 32 345554   665  4999999999999999  45544321112 889999999974     46799999998


Q ss_pred             cccccccCceeecccHHHHHHHHHHHHHHH
Q 011700          299 AFPLKLLGETRRLEHVDSARKSAKHAVAAI  328 (479)
Q Consensus       299 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  328 (479)
                      ......  .+   .....|.+++.++...+
T Consensus       420 ~~~g~~--~~---~l~~~a~r~~~i~~~~~  444 (463)
T 3s5w_A          420 ASHGLS--DT---LLSVLPVRAEEISGSLY  444 (463)
T ss_dssp             HHHCTT--TT---SSTTHHHHHHHHHHHHH
T ss_pred             ccCCcC--cc---chhHHHHHHHHHHHHHH
Confidence            743321  11   23345777787775554

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=3.5e-31  Score=286.01  Aligned_cols=297  Identities=16%  Similarity=0.140  Sum_probs=197.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||+||||||||++||..|+++|++   |+|||+++.....       +...   ..+|++...  ..........++.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~GG~-------~~~~---~~~pg~~~~--~~~~~~~~~~i~~  453 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQV---AALPGLGEW--SYHRDYRETQITK  453 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHH---TTSTTCGGG--HHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCe-------eeec---ccCCChHHH--HHHHHHHHHHHHH
Confidence            47999999999999999999999886   9999998642110       0000   011211100  0000011111111


Q ss_pred             c------CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc-----ccccCCCCCC--CCCeEEecCHHHH
Q 011700           84 H------GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK-----LEEFGLSGSD--AENVCYLRDLADA  150 (479)
Q Consensus        84 ~------gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-----~~~~g~~g~~--~~~v~~~~~~~~~  150 (479)
                      .      ++++..+          +.+.+.++.++.||+||||||+.|+.     |..++++|.+  ..++++..+   .
T Consensus       454 ~~~~~~~~v~i~~~----------~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~---~  520 (729)
T 1o94_A          454 LLKKNKESQLALGQ----------KPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQ---V  520 (729)
T ss_dssp             HHHHSTTCEEECSC----------CCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHH---H
T ss_pred             hhcccCCceEEEeC----------eEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHH---H
Confidence            1      3333322          23334445568899999999998542     2222346665  456664322   2


Q ss_pred             HHHHHHHhcCCCCCEEEEC--CChHHHHHHHHHhhCCCeEEEEeecCccccc-cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          151 NRLVNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMAR-LFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       151 ~~l~~~l~~~~~~~vvVIG--gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                        + + .....+++|+|||  +|++|+|+|..|++.|.+||++++.+ +++. .++.. .+.+.+.++++||++++++.+
T Consensus       521 --l-~-~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v  594 (729)
T 1o94_A          521 --M-D-GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFC  594 (729)
T ss_dssp             --H-H-CCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEE
T ss_pred             --h-c-CCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEE
Confidence              1 1 1122468999999  99999999999999999999999988 5542 12322 456778889999999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCC-cE------------------EeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCC
Q 011700          228 SSFDVDSNGKVVAVNLRDG-NR------------------LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSN  288 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g-~~------------------i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~  288 (479)
                      .+++.  ++......+.++ ++                  +++|.|++++|++|++.+++. +.     ..+|+++||++
T Consensus       595 ~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~-----~~vd~~~~t~~  666 (729)
T 1o94_A          595 SRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LK-----ARESEWAENDI  666 (729)
T ss_dssp             EEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HH-----HTGGGTGGGTC
T ss_pred             EEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hh-----hhcccccccCC
Confidence            99974  321111111233 33                  999999999999999987653 21     12688999999


Q ss_pred             CCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEeecCcceEeecC
Q 011700          289 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD  357 (479)
Q Consensus       289 ~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~G~  357 (479)
                      |+|||+|||+..           ..+..|+.||+.||.+|.+..   .+..+|+ ++..+++.++.+|-
T Consensus       667 ~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l---~~~~~p~-~~~~~~~~~~~~~~  720 (729)
T 1o94_A          667 KGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN---PQIAIPY-KRETIAWGTPHMPG  720 (729)
T ss_dssp             CEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC---TTSCCCC-CCCCCCTTCCSSTT
T ss_pred             CCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc---ccCCCCe-eeecccCcccccCC
Confidence            999999999863           346789999999999998653   4556777 66777777765553

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.96  E-value=1.9e-29  Score=258.40  Aligned_cols=287  Identities=11%  Similarity=0.073  Sum_probs=191.8

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcccc-cccCC---------------------C
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPALSK-GYLLP---------------------E   57 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l~~-~~~~~---------------------~   57 (479)
                      +..+||+|||||++|+++|..|++.|.. .+|+|||+.+...  +....... .+-.+                     .
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~-~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~   82 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAF-DQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS   82 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCC-SEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCC-CCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence            3568999999999999999999998871 2399999985321  11100000 00000                     0


Q ss_pred             CC-----C-------CCCCcccccCC-------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCC---Cc---
Q 011700           58 AP-----A-------RLPSFHTCVGA-------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTAT---GE---  110 (479)
Q Consensus        58 ~~-----~-------~~~~~~~~~~~-------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~---g~---  110 (479)
                      ..     .       .++.+......       .....+..+.++.+..++.+++|..++.+..  +|.+.+   |+   
T Consensus        83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS  162 (447)
T ss_dssp             CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred             chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence            00     0       00000000000       0001112233344667888999999976554  555544   65   


Q ss_pred             EEEeceEEeecCC--CcccccccCCCCCC------CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHh
Q 011700          111 TISYKILIIATGA--RALKLEEFGLSGSD------AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV  182 (479)
Q Consensus       111 ~~~~d~lviAtG~--~~~~~~~~g~~g~~------~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~  182 (479)
                      ++.||+||+|||.  .|+.|++   +|.+      ...+++.+++.+...       ..+++|+|||+|++|+|+|..|+
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~i---~G~~~~~~~~~g~v~~~~~~~~~~~-------~~~k~VvVvG~G~sg~e~A~~l~  232 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPNI---KGLDEYAKAVPGSVLHSSLFREPEL-------FVGESVLVVGGASSANDLVRHLT  232 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCCC---BTHHHHHHHSTTSEEEGGGCCCGGG-------GTTCCEEEECSSHHHHHHHHHHT
T ss_pred             EEEeCEEEECCCCCCCCCCCCC---CChhhhhccCCccEEEecccCChhh-------cCCCEEEEEccCcCHHHHHHHHH
Confidence            7999999999998  7777766   5532      123565554433322       25899999999999999999999


Q ss_pred             hCCCe-EEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE-EeccEEEEecCC
Q 011700          183 INKIN-VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGI  260 (479)
Q Consensus       183 ~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~Vi~a~G~  260 (479)
                      +.+.+ |++++|++.+                +++.||++  ...|++++. +++   .|.+.||++ +++|.||+|+|+
T Consensus       233 ~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~-~~~---~v~~~dG~~~~~~D~vi~atG~  290 (447)
T 2gv8_A          233 PVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP-TTR---EIYLKGGKVLSNIDRVIYCTGY  290 (447)
T ss_dssp             TTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET-TTT---EEEETTTEEECCCSEEEECCCB
T ss_pred             HHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec-CCC---EEEECCCCEeccCCEEEECCCC
Confidence            99999 9999998764                34567774  467888864 222   577889976 799999999999


Q ss_pred             CCChhh-----hhcc-ccc-ccCcEEEcCccc---CCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          261 RPNTSL-----FEGQ-LTL-EKGGIKVTGRLQ---SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       261 ~p~~~l-----~~~~-~~~-~~g~i~Vd~~l~---t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      +|++++     ++.. ... .++.+.+|.+.+   +++|+||++||+...           ..+..|..||+.+|++|.+
T Consensus       291 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-----------~~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          291 LYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             CCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-----------cCchHHHHHHHHHHHHHcC
Confidence            999988     5531 111 245555665555   689999999999764           2467789999999999987


Q ss_pred             CC
Q 011700          331 PD  332 (479)
Q Consensus       331 ~~  332 (479)
                      ..
T Consensus       360 ~~  361 (447)
T 2gv8_A          360 RL  361 (447)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.96  E-value=4.2e-30  Score=266.01  Aligned_cols=256  Identities=17%  Similarity=0.127  Sum_probs=187.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH-
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN-   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (479)
                      ++||+|||||+||++||.+|+++ ++   |+|||+++...+.....+...      ..++.        ....+...+. 
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~~------~g~~~--------~~~~~~~~l~~  169 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIKQ------EGFNK--------DSRKVVEELVG  169 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSEE------TTTTE--------EHHHHHHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeecccccc------CCCCC--------CHHHHHHHHHH
Confidence            47999999999999999999997 54   999999976433221111100      00110        0001111111 


Q ss_pred             --HcCcEEEeCceEEEEECCCcEEEe---CCCc--EEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHH
Q 011700           83 --EHGIELVLGTRVKSADVRRKTLVT---ATGE--TISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVN  155 (479)
Q Consensus        83 --~~gv~~~~~~~v~~i~~~~~~v~~---~~g~--~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~  155 (479)
                        +.+++++.++.|..++.+++.+.+   .+++  ++.||+||||||+.|+.|++   +|.+.+++++..   ++..+.+
T Consensus       170 ~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~---~g~~~~gv~~~~---~~~~~~~  243 (493)
T 1y56_A          170 KLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLF---ENNDMPGVFRRD---FALEVMN  243 (493)
T ss_dssp             TCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCC---TTTTSTTEEEHH---HHHHHHH
T ss_pred             HHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCC---CCCCCCCEEEcH---HHHHHHH
Confidence              458999999889888877654332   3443  68999999999999988776   777777887644   3333333


Q ss_pred             HHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700          156 VMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  235 (479)
Q Consensus       156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  235 (479)
                      .....++++++|||+|++++|                                   +.++++||++++++.+.+++.  +
T Consensus       244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~--~  286 (493)
T 1y56_A          244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG--N  286 (493)
T ss_dssp             TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--S
T ss_pred             hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--C
Confidence            222335689999999999988                                   446778999999999999986  3


Q ss_pred             CcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc-cccc---ccCcEE-EcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          236 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG-QLTL---EKGGIK-VTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       236 g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~-~~~~---~~g~i~-Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      +.+..+.+.+|+++++|.|++++|.+|++++++. ++..   ++|+|. ||+++| +.|+|||+|||+..          
T Consensus       287 ~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~----------  355 (493)
T 1y56_A          287 EKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI----------  355 (493)
T ss_dssp             SSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC----------
T ss_pred             CceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc----------
Confidence            3455677888999999999999999999987754 3433   366777 899999 99999999999975          


Q ss_pred             cccHHHHHHHHHHHHHHHcCCC
Q 011700          311 LEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                       .++..|..||+.||.+|.+..
T Consensus       356 -~~~~~A~~~g~~aa~~i~~~l  376 (493)
T 1y56_A          356 -KPHYANYLEGKLVGAYILKEF  376 (493)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHT
T ss_pred             -cCHHHHHHHHHHHHHHHHHHc
Confidence             346789999999999997643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.96  E-value=1.8e-30  Score=279.40  Aligned_cols=271  Identities=18%  Similarity=0.121  Sum_probs=192.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +++||+|||||+||++||..|+++|++   |+|||+++.....       +..   ...+|.+..  ...........+.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~GG~-------~~~---~~~~p~~~~--~~~~~~~~~~~~~  454 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDLGGR-------VTQ---ESALPGLSA--WGRVKEYREAVLA  454 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSCTH-------HHH---HHTSTTCGG--GGHHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCE-------eee---ccCCCchhH--HHHHHHHHHHHHH
Confidence            358999999999999999999999887   9999998642210       000   001111110  0001122334455


Q ss_pred             Hc-CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc--------cccccCCCCCCCCCeEEecCHHHHHHH
Q 011700           83 EH-GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL--------KLEEFGLSGSDAENVCYLRDLADANRL  153 (479)
Q Consensus        83 ~~-gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~--------~~~~~g~~g~~~~~v~~~~~~~~~~~l  153 (479)
                      +. +++++.++.+.          ..+++++.||+||+|||+.|+        .|++   +|.+..++++..   +..  
T Consensus       455 ~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i---~G~~~~~v~~~~---~~l--  516 (690)
T 3k30_A          455 ELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTAL---PIAEGMQVLGPD---DLF--  516 (690)
T ss_dssp             TCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCC---CBCTTSEEECHH---HHH--
T ss_pred             HcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCC---CCCCCCcEEcHH---HHh--
Confidence            55 88988875432          223456789999999999955        4444   666555554322   211  


Q ss_pred             HHHHhcCCCCCEEEEC--CChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          154 VNVMKSCSGGNAVVIG--GGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       154 ~~~l~~~~~~~vvVIG--gG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                       + .....+++++|||  +|++|+|+|..|.+.|.+|+++++.+.+++...++...+.+.+.++++||+++++++|++++
T Consensus       517 -~-~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~  594 (690)
T 3k30_A          517 -A-GRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG  594 (690)
T ss_dssp             -T-TCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEE
T ss_pred             -C-CCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence             1 1122467899999  99999999999999999999999998887754446667888899999999999999999997


Q ss_pred             EcCCCcEEEEE---eCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCce
Q 011700          232 VDSNGKVVAVN---LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGET  308 (479)
Q Consensus       232 ~~~~g~v~~v~---~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~  308 (479)
                      .  ++.  .+.   ..+++++++|.||+|+|++|++.++... .. .+.       +|+.|+|||+|||+..+       
T Consensus       595 ~--~~~--~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l-~~-~~~-------~t~~~~VyaiGD~~~~~-------  654 (690)
T 3k30_A          595 A--GGV--TVRDTYASIERELECDAVVMVTARLPREELYLDL-VA-RRD-------AGEIASVRGIGDAWAPG-------  654 (690)
T ss_dssp             T--TEE--EEEETTTCCEEEEECSEEEEESCEEECCHHHHHH-HH-HHH-------HTSCSEEEECGGGTSCB-------
T ss_pred             C--CeE--EEEEccCCeEEEEECCEEEECCCCCCChHHHHHH-hh-hhc-------ccCCCCEEEEeCCCchh-------
Confidence            4  321  232   2345689999999999999999876532 11 111       89999999999999753       


Q ss_pred             eecccHHHHHHHHHHHHHHHcCCC
Q 011700          309 RRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       309 ~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                          .+..|..||+.||.+|.+..
T Consensus       655 ----~~~~A~~~g~~aa~~i~~~l  674 (690)
T 3k30_A          655 ----TIAAAVWSGRRAAEEFDAVL  674 (690)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCCC
T ss_pred             ----hHHHHHHHHHHHHHHHHhhc
Confidence                35669999999999998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.95  E-value=1.4e-28  Score=263.84  Aligned_cols=259  Identities=22%  Similarity=0.248  Sum_probs=186.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ++||+|||||+||++||..|+++|++   |+|||+++...+. ..+..         .+|.....  ......+.+++++
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg~-~~~~~---------~~~~~~~~--~~~~~~~~~~~~~  437 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-FNIAK---------QIPGKEEF--YETLRYYRRMIEV  437 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-HHHHT---------TSTTCTTH--HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCe-eeccc---------cCCCHHHH--HHHHHHHHHHHHH
Confidence            57999999999999999999998876   9999998653221 00100         01111000  0001123455677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEE-EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETI-SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~-~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      .+++++.++.+..             ..+ .||+||||||++|+.|++   +|.+..++++..+.     +.  .....+
T Consensus       438 ~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i---~G~~~~~v~~~~~~-----l~--~~~~~~  494 (671)
T 1ps9_A          438 TGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPPI---DGIDHPKVLSYLDV-----LR--DKAPVG  494 (671)
T ss_dssp             HTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCCC---BTTTSTTEEEHHHH-----HT--SCCCCC
T ss_pred             cCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCC---CCCCCCcEeeHHHH-----hh--CCCCCC
Confidence            8999999875431             123 899999999999988876   66555566654221     11  112257


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC-------------------------------------eEEEEeecCccccccCCHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI-------------------------------------NVTMVFPEAHCMARLFTPK  205 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~-------------------------------------~Vtlv~~~~~~l~~~~~~~  205 (479)
                      ++++|||+|++|+|+|..|++.|.                                     +|+++++.+..+...+++.
T Consensus       495 ~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~  574 (671)
T 1ps9_A          495 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKT  574 (671)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTT
T ss_pred             CeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccc
Confidence            899999999999999999998773                                     5677777766666557777


Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR  283 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~  283 (479)
                      ....+.+.|+++||++++++++++++.  ++ + .+. .+|  +++++|.|++++|++|++++++.              
T Consensus       575 ~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~--------------  635 (671)
T 1ps9_A          575 TGWIHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQP--------------  635 (671)
T ss_dssp             THHHHHHHHHHTTCEEECSCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHH--------------
T ss_pred             cHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHH--------------
Confidence            788888999999999999999999973  33 2 232 567  57999999999999999987652              


Q ss_pred             ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHH
Q 011700          284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  328 (479)
Q Consensus       284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  328 (479)
                      ++...++||++|||+....         ..+..|++||..+|.||
T Consensus       636 l~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          636 LIDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI  671 (671)
T ss_dssp             HHTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred             HHhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence            1223478999999987642         24788999999999885

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.95  E-value=1.3e-27  Score=249.31  Aligned_cols=297  Identities=16%  Similarity=0.179  Sum_probs=188.5

Q ss_pred             cCeEEEECCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCC-------CCCCc--ccccccCCCCC------CCCCCccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFT-KRGVPPGELCIISEEPVAP-------YERPA--LSKGYLLPEAP------ARLPSFHT   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~-~~g~~~~~V~lie~~~~~~-------~~~~~--l~~~~~~~~~~------~~~~~~~~   67 (479)
                      ++||+|||||++|+++|..|+ +.|.+   |+|||+++...       |....  .....+.....      ..++.. .
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~-~   83 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT-Y   83 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS-E
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc-C
Confidence            479999999999999999999 87875   99999976421       11100  00000000000      000000 0


Q ss_pred             ccCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCC
Q 011700           68 CVGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAE  139 (479)
Q Consensus        68 ~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~  139 (479)
                      .........+....+++++  +++.+++|.+++.+..    +|.+.+|+++.||+||+|||  +.|+.|+++|++.... 
T Consensus        84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g-  162 (540)
T 3gwf_A           84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEG-  162 (540)
T ss_dssp             EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCS-
T ss_pred             CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCC-
Confidence            0001111223444567787  7888999999987655    77888888999999999999  6788887743322111 


Q ss_pred             CeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-ccc---cCCHHHHHHHH----
Q 011700          140 NVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MAR---LFTPKIASYYE----  211 (479)
Q Consensus       140 ~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~---~~~~~~~~~~~----  211 (479)
                      .+++.....+.       ....+++|+|||+|.+|+|+|..|++.+.+||+++|.+.+ ++.   .+++...+.++    
T Consensus       163 ~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~  235 (540)
T 3gwf_A          163 ETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYD  235 (540)
T ss_dssp             EEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHH
T ss_pred             CEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccH
Confidence            12222111110       1125899999999999999999999999999999999873 332   12222221111    


Q ss_pred             ---------------------------------------------------------------------HH---------
Q 011700          212 ---------------------------------------------------------------------EY---------  213 (479)
Q Consensus       212 ---------------------------------------------------------------------~~---------  213 (479)
                                                                                           +.         
T Consensus       236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~  315 (540)
T 3gwf_A          236 RIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPE  315 (540)
T ss_dssp             HHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                                 00         


Q ss_pred             ------------------------HHhCCcEEEc--CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          214 ------------------------YKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       214 ------------------------l~~~GV~i~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                                              +.+.+|+++.  +..|++|++  +    .|.+.||+++++|.||+|||+++++.++
T Consensus       316 ~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~--~----gv~~~dG~~~~~DvIV~ATGf~~~~~~~  389 (540)
T 3gwf_A          316 TARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA--K----GVVTEDGVLHELDVLVFATGFDAVDGNY  389 (540)
T ss_dssp             HHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS--S----EEEETTCCEEECSEEEECCCBSCSSHHH
T ss_pred             HHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec--C----eEEcCCCCEEECCEEEECCccCccccCc
Confidence                                    1145788885  678888864  3    4888999999999999999999998544


Q ss_pred             hc-ccccccCcEEEcC----------cccC-CCCCeEEE-eeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          268 EG-QLTLEKGGIKVTG----------RLQS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       268 ~~-~~~~~~g~i~Vd~----------~l~t-~~~~IyA~-GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      .. .+. ..+++.+++          .+.+ +.||+|.+ |..+...          .....+..|++++++.|.
T Consensus       390 ~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~----------s~~~~~e~q~~~i~~~i~  453 (540)
T 3gwf_A          390 RRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFT----------NLPPSIETQVEWISDTIG  453 (540)
T ss_dssp             HTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCS----------CHHHHHHHHHHHHHHHHH
T ss_pred             CcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCc----------cHHHHHHHHHHHHHHHHH
Confidence            32 111 122333332          2333 78999999 7765411          234566778888887774

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.93  E-value=1.6e-25  Score=233.85  Aligned_cols=182  Identities=18%  Similarity=0.215  Sum_probs=119.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCC--cccccccCCCCC------CCCCCcccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERP--ALSKGYLLPEAP------ARLPSFHTC   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~--~l~~~~~~~~~~------~~~~~~~~~   68 (479)
                      ++||||||||+||+++|..|++.|.+   |+|||+++...       |...  ......+.....      ..+... ..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~-~~   96 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK-YA   96 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-SC
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-CC
Confidence            57999999999999999999998886   99999976421       1100  000000000000      000000 00


Q ss_pred             cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCCC
Q 011700           69 VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAEN  140 (479)
Q Consensus        69 ~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~~  140 (479)
                      ........+.+.++++++  +++.+++|++++.+..    +|.+.+|+++.||+||+|||  +.|..|+++|+.... ..
T Consensus        97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~-g~  175 (549)
T 4ap3_A           97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFT-GD  175 (549)
T ss_dssp             BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCC-SE
T ss_pred             CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCC-Cc
Confidence            001111223344566777  7888999999986655    78888898999999999999  788888774332211 11


Q ss_pred             eEEecCHH-HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          141 VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       141 v~~~~~~~-~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +++..... +..       ...+++|+|||+|.+|+|+|..|++.+.+||++.|.+.+
T Consensus       176 ~~~~~~~~~~~~-------~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          176 IVHTARWPHDGV-------DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEGGGCCTTCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             eEEecccccccc-------ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            22222111 111       125899999999999999999999999999999999874

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.93  E-value=1e-25  Score=235.13  Aligned_cols=306  Identities=15%  Similarity=0.162  Sum_probs=181.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCC--Cccc---ccccCCCCC---CCCCCcccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YER--PALS---KGYLLPEAP---ARLPSFHTC   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~--~~l~---~~~~~~~~~---~~~~~~~~~   68 (479)
                      ++||||||||+||+++|..|++.|.+   |+|||+++...       |..  +...   ..+......   ..++.. ..
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~-~~   84 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSEN-FA   84 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBS-SC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCcccc-CC
Confidence            57999999999999999999998886   99999986421       110  0000   000000000   000000 00


Q ss_pred             cCCcccCCCHhHHHHcCc--EEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCCCC
Q 011700           69 VGANEERLTPKWYNEHGI--ELVLGTRVKSADVRRK----TLVTATGETISYKILIIATG--ARALKLEEFGLSGSDAEN  140 (479)
Q Consensus        69 ~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~~~  140 (479)
                      ........+....+++++  ++..+++|.+++.+..    .|.+.+|++++||+||+|||  +.|..|+++|++......
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~  164 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES  164 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence            001111223344556676  6788889999986654    78888898999999999999  888888874432221122


Q ss_pred             eEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-cccc---CCHHHHHHHH-----
Q 011700          141 VCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MARL---FTPKIASYYE-----  211 (479)
Q Consensus       141 v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-l~~~---~~~~~~~~~~-----  211 (479)
                      +++.+...+.....+ .....+++|+|||+|.+|+|+|..|++.+.+||++.|.+++ ++..   +++...+.++     
T Consensus       165 ~h~~~~~~~~~~~~~-~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~  243 (545)
T 3uox_A          165 FHSSRWPTDAEGAPK-GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPT  243 (545)
T ss_dssp             EEGGGCCBCTTSCBS-CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHH
T ss_pred             EEccccccccccccc-ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHH
Confidence            222221111000000 01125799999999999999999999999999999999874 3321   1111111110     


Q ss_pred             --------------------------------------------------------------------------------
Q 011700          212 --------------------------------------------------------------------------------  211 (479)
Q Consensus       212 --------------------------------------------------------------------------------  211 (479)
                                                                                                      
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~  323 (545)
T 3uox_A          244 ILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVA  323 (545)
T ss_dssp             HHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred             HHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence                                                                                            


Q ss_pred             ----------------------HHHHhCCcEEEc--CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          212 ----------------------EYYKSKGVKFVK--GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       212 ----------------------~~l~~~GV~i~~--~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                                            +.|.+.+|+++.  +..|++|++  +    .|.+.|| ++++|.||+|||+++++.++
T Consensus       324 ~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~--~----gv~~~dG-~~~~D~IV~ATGf~~~~~~~  396 (545)
T 3uox_A          324 EKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTP--E----GIKTADA-AYDLDVIIYATGFDAVTGSL  396 (545)
T ss_dssp             HHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEET--T----EEEESSC-EEECSEEEECCCCBSSSCSC
T ss_pred             HhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEcc--C----eEEeCCC-eeecCEEEECCccccccccC
Confidence                                  112223788885  678888875  3    4788999 99999999999999876543


Q ss_pred             hccccc-ccCcEEEcCc-----------ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          268 EGQLTL-EKGGIKVTGR-----------LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       268 ~~~~~~-~~g~i~Vd~~-----------l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      .. +.. ..++..+++.           +-.+.||+|.+.-    |+...+..   .....+..|++++++.|.
T Consensus       397 ~~-~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~g----p~~~~~~~---s~~~~~e~~~~~i~~~i~  462 (545)
T 3uox_A          397 DR-IDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVG----PHNGSTFC---NVGVCGGLQAEWVLRMIS  462 (545)
T ss_dssp             TT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSS----GGGTGGGS---CHHHHHHHHHHHHHHHHH
T ss_pred             CC-ceEECCCCccHHHhhccccceeeccccCCCCcEEEEeC----CCCCCccc---cHHHHHHHHHHHHHHHHH
Confidence            21 112 2233444322           1227899998732    22111111   234556778888888774

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.92  E-value=2.2e-24  Score=225.79  Aligned_cols=297  Identities=14%  Similarity=0.184  Sum_probs=180.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCccc-ccccCCCC--C-----CCCCCcccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP-------YERPALS-KGYLLPEA--P-----ARLPSFHTC   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~-------~~~~~l~-~~~~~~~~--~-----~~~~~~~~~   68 (479)
                      ++||+|||||++|+++|..|++.|++   |+|+|+++...       |....+. ........  .     ..++.. ..
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~-~~   91 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER-YA   91 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-SC
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-cC
Confidence            57999999999999999999999886   99999986421       1110000 00000000  0     000000 00


Q ss_pred             cCCcccCCCHhHHHHcC--cEEEeCceEEEEECCC----cEEEeCCCcEEEeceEEeecC--CCcccccccCCCCCCC-C
Q 011700           69 VGANEERLTPKWYNEHG--IELVLGTRVKSADVRR----KTLVTATGETISYKILIIATG--ARALKLEEFGLSGSDA-E  139 (479)
Q Consensus        69 ~~~~~~~~~~~~~~~~g--v~~~~~~~v~~i~~~~----~~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~~g~~~-~  139 (479)
                      ........+....++.+  .+++.+++|.+++.+.    .+|.+.+|+++++|+||+|||  +.|+.|++   +|.+. .
T Consensus        92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i---~G~~~f~  168 (542)
T 1w4x_A           92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNF---PGLKDFA  168 (542)
T ss_dssp             BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCC---TTGGGCC
T ss_pred             CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCC---CCcccCC
Confidence            00001111222234444  5688888999887543    367777888899999999999  56777776   44331 2


Q ss_pred             C-eEEecCHH-HHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-cc---cCCHHHH------
Q 011700          140 N-VCYLRDLA-DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-AR---LFTPKIA------  207 (479)
Q Consensus       140 ~-v~~~~~~~-~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-~~---~~~~~~~------  207 (479)
                      + +++..... +.       ....+++++|||+|.+|+|++..|++.+.+|+++.|.+.+. +.   .++++..      
T Consensus       169 G~~~hs~~~~~~~-------~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~  241 (542)
T 1w4x_A          169 GNLYHTGNWPHEP-------VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKR  241 (542)
T ss_dssp             SEEEEGGGCCSSC-------CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTT
T ss_pred             CceEECCCCCCch-------hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhh
Confidence            2 22211110 10       01258999999999999999999999999999999887652 21   0111111      


Q ss_pred             -----------------------------------------------------------------HHHHHHH--------
Q 011700          208 -----------------------------------------------------------------SYYEEYY--------  214 (479)
Q Consensus       208 -----------------------------------------------------------------~~~~~~l--------  214 (479)
                                                                                       +.+.+.+        
T Consensus       242 ~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (542)
T 1w4x_A          242 YAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPE  321 (542)
T ss_dssp             HHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHH
T ss_pred             CHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                             0011111        


Q ss_pred             ---------------------------HhCCcEEE--cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          215 ---------------------------KSKGVKFV--KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       215 ---------------------------~~~GV~i~--~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                                 .+.+|+++  .+..|++++.  +    .|.+.| +++++|.||+|||+++++.
T Consensus       322 ~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~--~----gv~~~d-~~~~~D~ii~atG~~~~~~  394 (542)
T 1w4x_A          322 VAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP--R----GVRTSE-REYELDSLVLATGFDALTG  394 (542)
T ss_dssp             HHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS--S----EEEESS-CEEECSEEEECCCCCCTTH
T ss_pred             HHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC--C----eEEeCC-eEEecCEEEEcCCcccccc
Confidence                                       11346766  3567888853  2    477888 8999999999999999877


Q ss_pred             hhhccccc-ccCcEEEcCcc----------cC-CCCCeEEE-eeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          266 LFEGQLTL-EKGGIKVTGRL----------QS-SNSSVYAV-GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       266 l~~~~~~~-~~g~i~Vd~~l----------~t-~~~~IyA~-GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ++.. +.. ..+++.+++..          .. ..||+|++ |+.+.....        .....|..|+++++++|..
T Consensus       395 ~~~~-~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~--------~~~~~~e~q~~~ia~~i~~  463 (542)
T 1w4x_A          395 ALFK-IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALS--------NMLVSIEQHVEWVTDHIAY  463 (542)
T ss_dssp             HHHT-SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGS--------CHHHHHHHHHHHHHHHHHH
T ss_pred             CcCc-eeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccc--------cHHHHHHHHHHHHHHHHHH
Confidence            6543 222 23345555432          22 56777776 766432110        2236788899999999864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.87  E-value=1.1e-21  Score=175.15  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=128.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------cC-----CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +++|||+|++|+|+|..|.+.|.+|+++++.+.++.+        .+     ++++.+.+.+.+++.||+++.+ +++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            5899999999999999999999999999998766531        12     4788999999999999999999 99999


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      +.++++  ..+.+.+| ++++|.||+|+|.+|+. ....++..++|.|.||+++||+.|+|||+|||+..+.        
T Consensus        82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~-~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~--------  149 (180)
T 2ywl_A           82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL-PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP--------  149 (180)
T ss_dssp             EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH-HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred             EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc-cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence            874333  35777888 89999999999999854 1223444457789999999999999999999998753        


Q ss_pred             cccHHHHHHHHHHHHHHHcCC
Q 011700          311 LEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~  331 (479)
                       +++..|..||+.||.||.+.
T Consensus       150 -~~~~~A~~~g~~aa~~i~~~  169 (180)
T 2ywl_A          150 -GHAIISAGDGAYVAVHLVSD  169 (180)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHhHHHHHHHHHHH
Confidence             25778999999999999853

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.81  E-value=9.1e-19  Score=181.17  Aligned_cols=289  Identities=13%  Similarity=0.123  Sum_probs=162.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCC-----------CcEEEEcCCCCCCCCCCcccc----------cccCCCCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPP-----------GELCIISEEPVAPYERPALSK----------GYLLPEAPARL   62 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~-----------~~V~lie~~~~~~~~~~~l~~----------~~~~~~~~~~~   62 (479)
                      .|||||||+||+||++|..|.+.+.+.           ...+.+|+.+.+.|+..++..          .+.....+...
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~  118 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS  118 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence            379999999999999999998765431           236788988765554322111          11111111000


Q ss_pred             CCcc---c---------------ccCCcccCCCHhHHHHcCcEEEeCceEEEEECCC----------cEEEeCCC-----
Q 011700           63 PSFH---T---------------CVGANEERLTPKWYNEHGIELVLGTRVKSADVRR----------KTLVTATG-----  109 (479)
Q Consensus        63 ~~~~---~---------------~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~----------~~v~~~~g-----  109 (479)
                      -.|.   .               ....+...++..+.++.+..+..+++|+++....          .+|++.++     
T Consensus       119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~  198 (501)
T 4b63_A          119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI  198 (501)
T ss_dssp             TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred             cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence            0000   0               0000000111122234456678888999886422          34555432     


Q ss_pred             cEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHH-HHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhC--CC
Q 011700          110 ETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADA-NRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN--KI  186 (479)
Q Consensus       110 ~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~-~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--g~  186 (479)
                      +++.++.||+|||..|..|...   +.. ..+++...+.+. +.+.  -....+|+|+|||+|.+|+|++..|.+.  +.
T Consensus       199 ~~~~ar~vVlatG~~P~iP~~~---~~~-g~v~Hss~y~~~~~~~~--~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~  272 (501)
T 4b63_A          199 SARRTRKVVIAIGGTAKMPSGL---PQD-PRIIHSSKYCTTLPALL--KDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNS  272 (501)
T ss_dssp             EEEEEEEEEECCCCEECCCTTS---CCC-TTEEEGGGHHHHHHHHS--CCTTSCCEEEEECCSHHHHHHHHHHHHHSTTC
T ss_pred             EEEEeCEEEECcCCCCCCCCCC---CCC-cceeeccccccchhhcc--ccccCCcEEEEECCcHHHHHHHHHHHhcCCCc
Confidence            4689999999999988877653   222 356655544322 1110  1123689999999999999999999864  78


Q ss_pred             eEEEEeecCccccc--------cCCHHH-----------HHH--------------------HHHHH-Hh---------C
Q 011700          187 NVTMVFPEAHCMAR--------LFTPKI-----------ASY--------------------YEEYY-KS---------K  217 (479)
Q Consensus       187 ~Vtlv~~~~~~l~~--------~~~~~~-----------~~~--------------------~~~~l-~~---------~  217 (479)
                      +|+++.|++.+.+.        .++++.           ...                    +.+.+ ++         .
T Consensus       273 ~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~  352 (501)
T 4b63_A          273 RTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQW  352 (501)
T ss_dssp             EEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGC
T ss_pred             eEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccc
Confidence            99999998754332        111111           111                    11111 00         1


Q ss_pred             CcEEEcCCceEEEEEcCC-CcE-----------EEEEeCCCcEEeccEEEEecCCCCChh--hhhc--cccc-ccCcEEE
Q 011700          218 GVKFVKGTVLSSFDVDSN-GKV-----------VAVNLRDGNRLPTDMVVVGIGIRPNTS--LFEG--QLTL-EKGGIKV  280 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~-g~v-----------~~v~~~~g~~i~~D~Vi~a~G~~p~~~--l~~~--~~~~-~~g~i~V  280 (479)
                      ...+..+..+..++.... +++           ..+.+.+|+++++|.||+|||++|+..  |+..  .+.. .+|...|
T Consensus       353 ~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v  432 (501)
T 4b63_A          353 QHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKP  432 (501)
T ss_dssp             SSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCB
T ss_pred             ceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeee
Confidence            124555555555543221 111           134556888999999999999998864  2221  2332 4677888


Q ss_pred             cCcccC--------CCCCeEEEeeec
Q 011700          281 TGRLQS--------SNSSVYAVGDVA  298 (479)
Q Consensus       281 d~~l~t--------~~~~IyA~GD~~  298 (479)
                      +..++.        ..++||+.|-+-
T Consensus       433 ~rdy~~~~~~~~~~~~~~i~~qg~~~  458 (501)
T 4b63_A          433 HRDYRVEMDPSKVSSEAGIWLQGCNE  458 (501)
T ss_dssp             CTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred             CCCcEEeecCCccCCCceEEecCCCc
Confidence            876543        246799999543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.74  E-value=2.9e-19  Score=183.54  Aligned_cols=222  Identities=15%  Similarity=0.103  Sum_probs=129.2

Q ss_pred             HHHHcCcEEEeCceEEEEECCCcEE---EeC-CCcEEEeceEEeecCCCcccccccC-CCCCCCCCeEEecCHHHHHHHH
Q 011700           80 WYNEHGIELVLGTRVKSADVRRKTL---VTA-TGETISYKILIIATGARALKLEEFG-LSGSDAENVCYLRDLADANRLV  154 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~~v---~~~-~g~~~~~d~lviAtG~~~~~~~~~g-~~g~~~~~v~~~~~~~~~~~l~  154 (479)
                      .+++.|++++.++.| ++..++..+   .+. ++.++.+|.||+|||+.+..++... -++.+.++      +.-+.+.-
T Consensus       128 ~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdg------i~~a~~aG  200 (472)
T 2e5v_A          128 LAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDG------MAIAFKAG  200 (472)
T ss_dssp             HHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSCHH------HHHHHHTT
T ss_pred             HHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCchHH------HHHHHHcC
Confidence            345679999999989 887665544   332 2335789999999999887655311 01111111      10010000


Q ss_pred             HHHhcC---CC-CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHH--------HHHHHHHHHhCCcEEE
Q 011700          155 NVMKSC---SG-GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI--------ASYYEEYYKSKGVKFV  222 (479)
Q Consensus       155 ~~l~~~---~~-~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~--------~~~~~~~l~~~GV~i~  222 (479)
                      ..+...   .. ...+++|+|  +++++..++..|..+ +..+.++++++ ++++.        +..+.+.+++.|. ++
T Consensus       201 a~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~  275 (472)
T 2e5v_A          201 TILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VF  275 (472)
T ss_dssp             CCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EE
T ss_pred             CCEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EE
Confidence            000000   01 123455766  788888899999888 77888888876 44433        5666666766653 22


Q ss_pred             cCCceEEEEEcCCCcEEEEEeCCCcEEe-ccEEEEecCCCCChhhhhcc--cccccCcEEEcCcccCCCCCeEEEeeecc
Q 011700          223 KGTVLSSFDVDSNGKVVAVNLRDGNRLP-TDMVVVGIGIRPNTSLFEGQ--LTLEKGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~-~D~Vi~a~G~~p~~~l~~~~--~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                      ++...  +    +.      +  .++++ .|.++++.|..|+ ++++..  .....|+|.||+++||++|+|||+|||++
T Consensus       276 ld~~~--~----~~------~--~~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~  340 (472)
T 2e5v_A          276 IDLSK--I----ED------F--ERKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSD  340 (472)
T ss_dssp             EECTT--C----TT------H--HHHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             Eeccc--h----HH------H--HHHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhcc
Confidence            22110  0    00      0  02333 4777888999999 654422  11257999999999999999999999998


Q ss_pred             ccccccCceee-cccHHHHHHHHHHHHHHHcC
Q 011700          300 FPLKLLGETRR-LEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       300 ~~~~~~g~~~~-~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ...  +|..+. -.....+...|+.|++++.+
T Consensus       341 ~~~--hg~~rl~~~sl~~~~v~G~~a~~~~a~  370 (472)
T 2e5v_A          341 SGL--HGANRLASNSLLEGLVFGINLPRYVDS  370 (472)
T ss_dssp             CSS--STTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred             ccc--CCCCCCCcccHHHHHHHHHHHHHHHHh
Confidence            321  122110 01233444556666666654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.59  E-value=6.4e-15  Score=136.71  Aligned_cols=155  Identities=14%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-----------------ccccc------CCHHHHHHHHHHHHhC-C
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------------CMARL------FTPKIASYYEEYYKSK-G  218 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-----------------~l~~~------~~~~~~~~~~~~l~~~-G  218 (479)
                      -+++|||+|+.|+++|..|++.|.+|+++++...                 ++...      ...++.+.+.+.+++. |
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g   83 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   83 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999999999998721                 11110      0136677888888887 9


Q ss_pred             cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh--------------------hhh----cccccc
Q 011700          219 VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS--------------------LFE----GQLTLE  274 (479)
Q Consensus       219 V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~--------------------l~~----~~~~~~  274 (479)
                      ++++ ++++++++. +++.+..+.+.+|+++++|.||+|+|..++..                    +.+    .++...
T Consensus        84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~  161 (232)
T 2cul_A           84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV  161 (232)
T ss_dssp             EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred             cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence            9999 468999987 35666678888898999999999999954422                    211    112111


Q ss_pred             cCc----------------EEEc-------CcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          275 KGG----------------IKVT-------GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       275 ~g~----------------i~Vd-------~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      .+.                ..+.       ...+|++|+|||+|||+ ..          ..+..|..||+.+|.+|..
T Consensus       162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~  229 (232)
T 2cul_A          162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLH  229 (232)
T ss_dssp             EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHh
Confidence            100                0111       01237999999999999 43          3567789999999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.58  E-value=2.1e-16  Score=158.75  Aligned_cols=121  Identities=18%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc------cccCCCCCC-------
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK------GYLLPEAPA-------   60 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~-------   60 (479)
                      ||+++||+|||||++|++||..|+++|.+   |+|+|+.+....       .++.+..      .++. ....       
T Consensus         1 MM~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~-~~~~~~~~~l~   76 (401)
T 2gqf_A            1 MSQYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS-QNPHFVKSALA   76 (401)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEEC-SCTTSTHHHHH
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhcc-CCHHHHHHHHH
Confidence            78889999999999999999999999987   999999864210       0111100      0000 0000       


Q ss_pred             --------------CCCCc------ccc--cCCcccCCCHhHHHHcCcEEEeCceEEEEECC----Cc--EEEeCCCcEE
Q 011700           61 --------------RLPSF------HTC--VGANEERLTPKWYNEHGIELVLGTRVKSADVR----RK--TLVTATGETI  112 (479)
Q Consensus        61 --------------~~~~~------~~~--~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~----~~--~v~~~~g~~~  112 (479)
                                    .++..      .+.  ........+.+.+++.|++++.+++|.++..+    ..  .+.+.++ ++
T Consensus        77 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i  155 (401)
T 2gqf_A           77 RYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QW  155 (401)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EE
T ss_pred             hCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EE
Confidence                          00000      000  00000011233455679999999999988744    22  4555555 79


Q ss_pred             EeceEEeecCCCcc
Q 011700          113 SYKILIIATGARAL  126 (479)
Q Consensus       113 ~~d~lviAtG~~~~  126 (479)
                      ++|+||+|||+.+.
T Consensus       156 ~ad~VVlAtG~~s~  169 (401)
T 2gqf_A          156 QCKNLIVATGGLSM  169 (401)
T ss_dssp             EESEEEECCCCSSC
T ss_pred             ECCEEEECCCCccC
Confidence            99999999998873

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.31  E-value=3.6e-12  Score=129.23  Aligned_cols=94  Identities=17%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--------CCCChhhhhcc-cc-
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--------IRPNTSLFEGQ-LT-  272 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--------~~p~~~l~~~~-~~-  272 (479)
                      +..+...+...+++.| +++++++|++|+.+++ .+ .|.+.+|+++.+|.||+|+|        +.|+.+..... +. 
T Consensus       203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~  279 (431)
T 3k7m_X          203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGD-VV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE  279 (431)
T ss_dssp             TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSS-SE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence            4445566666667778 9999999999987433 34 57888898899999999999        88887644321 11 


Q ss_pred             -cccCcEEEcCcccCCCCCeEEEeeecc
Q 011700          273 -LEKGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       273 -~~~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                       .....++|+..++|+.++||+.||+..
T Consensus       280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~  307 (431)
T 3k7m_X          280 GHGGQGLKILIHVRGAEAGIECVGDGIF  307 (431)
T ss_dssp             CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred             CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence             134559999999999999999999743

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.28  E-value=1.2e-11  Score=118.11  Aligned_cols=165  Identities=15%  Similarity=0.096  Sum_probs=115.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCccccc-------------------------------------cCCH
Q 011700          163 GNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR-------------------------------------LFTP  204 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~~-------------------------------------~~~~  204 (479)
                      .+|+|||+|++|+.+|..|++. |.+|+++++.+.+...                                     ....
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 9999999988654210                                     0124


Q ss_pred             HHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeC---------CC-----cEEeccEEEEecCCCCChhhhh-
Q 011700          205 KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----NRLPTDMVVVGIGIRPNTSLFE-  268 (479)
Q Consensus       205 ~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~---------~g-----~~i~~D~Vi~a~G~~p~~~l~~-  268 (479)
                      ++...+.+.+.+ .||++++++++.++.. +++++..+.+.         ++     .++++|.||+|+|..++..... 
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~  198 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGV  198 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHH
Confidence            455566666655 7999999999999987 35555555542         22     5799999999999887753111 


Q ss_pred             -----cc--ccc-ccCcEEEcC-------cccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          269 -----GQ--LTL-EKGGIKVTG-------RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       269 -----~~--~~~-~~g~i~Vd~-------~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                           .+  +.. ...++.+|.       +.+++.|++|++||++...   +|.++..+.+..+..+|+.+|.++...
T Consensus       199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~  273 (284)
T 1rp0_A          199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKA  273 (284)
T ss_dssp             HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHH
Confidence                 11  111 123344442       3467789999999987532   233444456777889999999998754

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.20  E-value=4.2e-11  Score=106.11  Aligned_cols=114  Identities=19%  Similarity=0.188  Sum_probs=77.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc-ccCCcccCCCHhHHHH
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT-CVGANEERLTPKWYNE   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   83 (479)
                      +|++|||||++|+.+|..|++.|.+   |+|+|+.+.......          ....+|.+.. ..+......+.+.+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~   68 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKGVS----------RVPNYPGLLDEPSGEELLRRLEAHARR   68 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTTCS----------CCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccCch----------hhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence            7999999999999999999999886   999999863211100          0111122100 0011122334556778


Q ss_pred             cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcccccccCC
Q 011700           84 HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARALKLEEFGL  133 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~  133 (479)
                      .|++++.+ +|.+++.++  ..+.+.++ ++++|.||+|+|..|..+...++
T Consensus        69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~~~g~  118 (180)
T 2ywl_A           69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPSLLGL  118 (180)
T ss_dssp             TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHHHHTC
T ss_pred             cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccccCCC
Confidence            89999999 898887643  35666677 89999999999999865444333

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.11  E-value=1.3e-09  Score=107.46  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|++++++++|++++.++++.+ .+.+.+|  .++.+|.||+|+|...
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcch
Confidence            457788888899999999999999999998444433 4777887  4899999999999763

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.08  E-value=1.4e-10  Score=121.14  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=92.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccccccCC----CCCCCCCC------------c
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYLLP----EAPARLPS------------F   65 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~~----~~~~~~~~------------~   65 (479)
                      .++||||||||+||++||..|++.|.+   |+|||+++.......+ .+.+....    .....+.+            +
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f  103 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF  103 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence            358999999999999999999999987   9999997421111111 11100000    00000000            0


Q ss_pred             cc---ccCCc------------ccCCCHhHHHH-cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCcc
Q 011700           66 HT---CVGAN------------EERLTPKWYNE-HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        66 ~~---~~~~~------------~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                      ..   ..+..            ....+.+.+++ .|++++. ++|..+..++.   .|.+.+|.++.+|.||+|||+.+.
T Consensus       104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            00   00000            00112233445 5899965 58998876544   356677888999999999999987


Q ss_pred             cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700          127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF  192 (479)
Q Consensus       127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~  192 (479)
                      .+..   +|.+.   +                  .+.+   +| +.++++++..|.++|.+|+.+.
T Consensus       183 ~~~i---~G~~~---~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~  220 (651)
T 3ces_A          183 GKIH---IGLDN---Y------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK  220 (651)
T ss_dssp             CEEE---CC--------------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred             Cccc---cCccc---C------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence            7665   44321   0                  1233   56 7889999999999999999875

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.03  E-value=2.8e-10  Score=119.83  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||+.|++.|  .+   |+|||+.+.
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~~~   41 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKVYP   41 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESSCG
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCCCC
Confidence            589999999999999999999988  76   999999853

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.02  E-value=1e-10  Score=120.58  Aligned_cols=150  Identities=14%  Similarity=0.127  Sum_probs=105.9

Q ss_pred             EeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHH---------HHHHhcCCCCCEEEECCChHHHHHHHHHhh
Q 011700          113 SYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRL---------VNVMKSCSGGNAVVIGGGYIGMECAASLVI  183 (479)
Q Consensus       113 ~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l---------~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~  183 (479)
                      .||++++++|++|+.+++   .+.+.++++......+..++         ..........+|+|||+|+.|+.+|..|++
T Consensus        37 ~~~~l~~~~g~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~  113 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLS---QYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL  113 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHH---HHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcE---eehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence            578999999999887776   32223334444455554443         111111235789999999999999999999


Q ss_pred             CCCeEEEEeecCccccc----cC----------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          184 NKINVTMVFPEAHCMAR----LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       184 ~g~~Vtlv~~~~~~l~~----~~----------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                      .|.+|+++++.+.+...    ..                            ..++.+.+.+.+++.||++++++++++++
T Consensus       114 ~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~  193 (497)
T 2bry_A          114 LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQ  193 (497)
T ss_dssp             TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEE
T ss_pred             CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence            99999999987653100    00                            04666777888888999999999999998


Q ss_pred             EcC-CCcEEEEEe--C-CC--cEEeccEEEEecCCCCChh
Q 011700          232 VDS-NGKVVAVNL--R-DG--NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       232 ~~~-~g~v~~v~~--~-~g--~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .++ ++....+.+  . +|  +++.+|.||+|+|..+...
T Consensus       194 ~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r  233 (497)
T 2bry_A          194 PPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE  233 (497)
T ss_dssp             CCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred             EecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence            631 232334555  4 56  5799999999999988664

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.95  E-value=1.1e-09  Score=101.34  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=71.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc----ccCC---cccC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT----CVGA---NEER   75 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~---~~~~   75 (479)
                      +++||+|||||++|+++|..|+++|.+   |+|||+...... .++..  ....   .....+..    ..+.   ....
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G-~~~~~--~~~~---~~~~~~~~~~~d~~g~~~~~~~~   72 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVM-MPFLP--PKPP---FPPGSLLERAYDPKDERVWAFHA   72 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTT-CCSSC--CCSC---CCTTCHHHHHCCTTCCCHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCC-cccCc--cccc---cchhhHHhhhccCCCCCHHHHHH
Confidence            359999999999999999999999887   999999732110 00000  0000   00000000    0000   0111


Q ss_pred             CCHhHHHHc-CcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           76 LTPKWYNEH-GIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        76 ~~~~~~~~~-gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .+.+.+++. +++++. ++|.++..++.   .+.+.+|+++++|+||+|||......
T Consensus        73 ~l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~  128 (232)
T 2cul_A           73 RAKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR  128 (232)
T ss_dssp             HHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred             HHHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence            223445565 999985 58988876544   35567787899999999999875443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.94  E-value=1.1e-09  Score=110.05  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=71.9

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc------cccCCCCCCC-------
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK------GYLLPEAPAR-------   61 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~------~~~~~~~~~~-------   61 (479)
                      ++++||+|||||+||++||..|+++|.+   |+|+|+.+....       .++.+..      .+.. .....       
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~-~~~~~~~~~l~~  100 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLS-GNPHFCKSALAR  100 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEE-SSTTTTHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhh-cCHHHHHHHHHh
Confidence            4568999999999999999999999987   999999875210       0010000      0000 00000       


Q ss_pred             --------------CC------Cccccc--CCcccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceE
Q 011700           62 --------------LP------SFHTCV--GANEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKIL  117 (479)
Q Consensus        62 --------------~~------~~~~~~--~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~l  117 (479)
                                    ++      +..+..  .......+.+.+++.|++++.+++|.++..++.  .|.+.++ ++.+|+|
T Consensus       101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~V  179 (417)
T 3v76_A          101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASL  179 (417)
T ss_dssp             SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEE
T ss_pred             cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEE
Confidence                          00      000000  000011123345567999999999999876544  4555666 8999999


Q ss_pred             EeecCCCc
Q 011700          118 IIATGARA  125 (479)
Q Consensus       118 viAtG~~~  125 (479)
                      |+|||..+
T Consensus       180 IlAtG~~S  187 (417)
T 3v76_A          180 VVASGGKS  187 (417)
T ss_dssp             EECCCCSS
T ss_pred             EECCCCcc
Confidence            99999876

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.87  E-value=2.1e-09  Score=111.90  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=95.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-ccccccC-----------CCC-------------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYLL-----------PEA-------------   58 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~~-----------~~~-------------   58 (479)
                      ++||||||||+||++||..|++.|.+   |+|||+.+.......+ .+.+...           ...             
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~  103 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFK  103 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhccccee
Confidence            58999999999999999999999987   9999997411111111 1100000           000             


Q ss_pred             ---CCCCCCccc---ccC-CcccCCCHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCCccc
Q 011700           59 ---PARLPSFHT---CVG-ANEERLTPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        59 ---~~~~~~~~~---~~~-~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                         ...-+....   ... ......+.+.+++ .|++++. ++|..+..++..   |.+.+|.++.+|.||+|||..+..
T Consensus       104 ~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~  182 (637)
T 2zxi_A          104 MLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNG  182 (637)
T ss_dssp             EESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTC
T ss_pred             ecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccC
Confidence               000000000   000 0000112233445 5899965 589988765443   567788899999999999998876


Q ss_pred             ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEee
Q 011700          128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFP  193 (479)
Q Consensus       128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~  193 (479)
                      +..   +|..   .+                  .+.+   +| +..+++++..|.++|.+++.+..
T Consensus       183 ~~~---~G~~---~~------------------~~Gr---~G-~~~A~~la~~L~~lG~~v~~l~t  220 (637)
T 2zxi_A          183 VIY---IGDK---MI------------------PGGR---LG-EPRSEGLSDFYRRFDFPLIRFKT  220 (637)
T ss_dssp             EEE---ETTE---EE------------------ECSB---TT-BCCBCTHHHHHHHTTCCCEEEEE
T ss_pred             cee---ccce---ec------------------CCCC---CC-chhHHHHHHHHHhcCCceEEecC
Confidence            665   4432   11                  1223   23 56789999999999988876643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.86  E-value=3.9e-09  Score=104.96  Aligned_cols=123  Identities=16%  Similarity=0.207  Sum_probs=77.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--cc---------cccC--CCCCCCCCCccccc
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--SK---------GYLL--PEAPARLPSFHTCV   69 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~~---------~~~~--~~~~~~~~~~~~~~   69 (479)
                      +++||+|||||++|+++|..|++.|.+   |+|+|+.+.........  ..         ++..  .........+....
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   86 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM   86 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe
Confidence            358999999999999999999999886   99999986532110000  00         0000  00000000000000


Q ss_pred             -CC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           70 -GA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        70 -~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                       +.                  .....+.+.+.+.|++++.+++|++++.+. .+++.+|+++++|.||.|+|..+....
T Consensus        87 ~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~vr~  164 (379)
T 3alj_A           87 HNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSKVRD  164 (379)
T ss_dssp             TTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCHHHH
T ss_pred             CCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHHHHH
Confidence             00                  001112334456799999999999998755 888888889999999999998865443

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.85  E-value=2.7e-09  Score=111.54  Aligned_cols=159  Identities=19%  Similarity=0.198  Sum_probs=94.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc-cccccc-----------CCCC------------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA-LSKGYL-----------LPEA------------   58 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~-l~~~~~-----------~~~~------------   58 (479)
                      .++||+|||||+||++||..|+++|.+   |+|+|+.+.......+ .+.+..           ....            
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            358999999999999999999999987   9999997421111111 000000           0000            


Q ss_pred             ----CCCCCCccc---ccCC-cccCCCHhHHHH-cCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCCcc
Q 011700           59 ----PARLPSFHT---CVGA-NEERLTPKWYNE-HGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        59 ----~~~~~~~~~---~~~~-~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                          ...-|....   .... .....+.+.+++ .|++++.+ .|..+..++..   |.+.+|.++.+|.||+|||+.+.
T Consensus        97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A           97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence                000000000   0000 000112233445 48999765 88887765544   55677889999999999999876


Q ss_pred             cccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEe
Q 011700          127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF  192 (479)
Q Consensus       127 ~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~  192 (479)
                      .+..   .|..   .+                  ++.+++  | +.++++++..|.+.|.+|+.+.
T Consensus       176 ~~i~---~G~~---~~------------------~~g~~v--G-~~~a~~la~~L~~~G~kv~~l~  214 (641)
T 3cp8_A          176 GLIH---IGMD---HF------------------PGGRST--A-EPPVEGLTESLASLGFSFGRLK  214 (641)
T ss_dssp             CEEE---ETTE---EE------------------ECSSST--T-SCCBCSHHHHHHHTTCCEEEEE
T ss_pred             ccce---eeee---ee------------------cccccc--C-CchhhhhHHHHHhCCceEEeec
Confidence            5543   2211   01                  112221  3 5778899999999999987653

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.82  E-value=3.1e-09  Score=105.75  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=71.6

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc---ccccccC----CCCCC----CCCCccc--c
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA---LSKGYLL----PEAPA----RLPSFHT--C   68 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~---l~~~~~~----~~~~~----~~~~~~~--~   68 (479)
                      |++|||+||||||||+++|..|+++|++   |+|+|+.+.......+   ++...+.    .....    .+.....  .
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~---V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~   78 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGP   78 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECT
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeC
Confidence            4569999999999999999999999998   9999997643221111   1110000    00000    0000000  0


Q ss_pred             cC------------Cc---------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEe----CCC--cEEEeceEEeec
Q 011700           69 VG------------AN---------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVT----ATG--ETISYKILIIAT  121 (479)
Q Consensus        69 ~~------------~~---------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~----~~g--~~~~~d~lviAt  121 (479)
                      .+            ..         ....+.+...+.|++++.++++..+..++..+..    .++  .++++|.||.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAd  158 (397)
T 3oz2_A           79 SEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAAD  158 (397)
T ss_dssp             TCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCC
Confidence            00            00         0001122234679999999999887766554321    233  468999999999


Q ss_pred             CCCcc
Q 011700          122 GARAL  126 (479)
Q Consensus       122 G~~~~  126 (479)
                      |....
T Consensus       159 G~~S~  163 (397)
T 3oz2_A          159 GFESE  163 (397)
T ss_dssp             CTTCH
T ss_pred             ccccH
Confidence            98754

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.82  E-value=8.9e-08  Score=96.96  Aligned_cols=59  Identities=20%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCC---ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGT---VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~---~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|+++++++   +|++++. +++.+..|.+.+|+++.+|.||+|+|...
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            45677888888999999999999   9999987 46677779999998999999999999643

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.80  E-value=2.5e-09  Score=110.36  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ...+.+.+.+.+++.|++|+++++|++|+. ++++++.|++.||+++.||.||++++...
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            356788889999999999999999999998 57888899999999999999999877543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.79  E-value=1e-08  Score=103.23  Aligned_cols=127  Identities=18%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCC-cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-Ccccccc---cC---------CCCC-------
Q 011700            1 MGR-AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYER-PALSKGY---LL---------PEAP-------   59 (479)
Q Consensus         1 M~~-~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~-~~l~~~~---~~---------~~~~-------   59 (479)
                      |+. ++||+|||||++|+++|..|+++|.+   |+|+|+.+...+.. ..+....   +.         ....       
T Consensus         1 M~~~~~dVvIIGgG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   77 (421)
T 3nix_A            1 MQREKVDVLVIGAGPAGTVAASLVNKSGFK---VKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAK   77 (421)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEE
T ss_pred             CCCccCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcE
Confidence            543 48999999999999999999999987   99999986422111 0000000   00         0000       


Q ss_pred             -------C--CC-------CCcccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECCCc----EEEeCCCc--EEEece
Q 011700           60 -------A--RL-------PSFHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVRRK----TLVTATGE--TISYKI  116 (479)
Q Consensus        60 -------~--~~-------~~~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~----~v~~~~g~--~~~~d~  116 (479)
                             .  .+       +....... ......+.+.+.+.|++++.+++|.+++.++.    .+.+.+|+  ++++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~  157 (421)
T 3nix_A           78 FVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARF  157 (421)
T ss_dssp             EEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEE
T ss_pred             EEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCE
Confidence                   0  00       00000000 00001122334456999999999999876533    23446776  699999


Q ss_pred             EEeecCCCcccccc
Q 011700          117 LIIATGARALKLEE  130 (479)
Q Consensus       117 lviAtG~~~~~~~~  130 (479)
                      ||.|+|........
T Consensus       158 vV~A~G~~s~l~~~  171 (421)
T 3nix_A          158 IIDASGYGRVIPRM  171 (421)
T ss_dssp             EEECCGGGCHHHHH
T ss_pred             EEECCCCchhhHHh
Confidence            99999987654433

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.77  E-value=2e-11  Score=129.12  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             HhCCcEEEcCCceEEEEEcCC-CcEEEEEeC---CCc--EEeccEEEEecCCCCChhhhh
Q 011700          215 KSKGVKFVKGTVLSSFDVDSN-GKVVAVNLR---DGN--RLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                      ++.||++++++.|++|..+++ +++..|++.   +|+  ++.+|.||+|+|..|+..++.
T Consensus       271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred             cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence            345899999999999987433 367777764   354  688999999999999998764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.76  E-value=1.7e-08  Score=105.95  Aligned_cols=124  Identities=23%  Similarity=0.276  Sum_probs=74.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cccc---------c-----------------c
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-ALSK---------G-----------------Y   53 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~l~~---------~-----------------~   53 (479)
                      ||+++||||||||+||+++|..|+++|.+   |+|||+.+....... .+..         +                 +
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~   96 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATF   96 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEE
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEE
Confidence            56679999999999999999999999886   999999864322110 0000         0                 0


Q ss_pred             cCCCCCC----CC--CC-------cccccC-CcccCCCHhHHHHcCcEEEeCceEEEEECC-Cc--EEEeC-CC--cEEE
Q 011700           54 LLPEAPA----RL--PS-------FHTCVG-ANEERLTPKWYNEHGIELVLGTRVKSADVR-RK--TLVTA-TG--ETIS  113 (479)
Q Consensus        54 ~~~~~~~----~~--~~-------~~~~~~-~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-~~--~v~~~-~g--~~~~  113 (479)
                      .......    .+  +.       ...... ......+.+.+.+.|++++.+++|.++..+ +.  .|.+. +|  .++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~  176 (591)
T 3i3l_A           97 LWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVE  176 (591)
T ss_dssp             ECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEE
T ss_pred             EecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEE
Confidence            0000000    00  00       000000 000011223345689999999999999864 32  45555 56  5799


Q ss_pred             eceEEeecCCCccc
Q 011700          114 YKILIIATGARALK  127 (479)
Q Consensus       114 ~d~lviAtG~~~~~  127 (479)
                      +|.||.|+|.....
T Consensus       177 AdlVV~AdG~~S~l  190 (591)
T 3i3l_A          177 SDFVIDAGGSGGPI  190 (591)
T ss_dssp             ESEEEECCGGGCHH
T ss_pred             cCEEEECCCCcchh
Confidence            99999999987643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.75  E-value=1.5e-08  Score=101.27  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=73.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--ccc---------ccc-----CCCCCCC------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LSK---------GYL-----LPEAPAR------   61 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~~---------~~~-----~~~~~~~------   61 (479)
                      ++||+|||||++|+++|..|+++|.+   |+|+|+.+........  +..         ++.     .......      
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~   82 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYH   82 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeC
Confidence            47999999999999999999999987   9999998643111000  000         000     0000000      


Q ss_pred             ----CCCccc----------ccCC-cccCCCHhHHHHc-CcEEEeCceEEEEECCCc----EEEeCCCcEEEeceEEeec
Q 011700           62 ----LPSFHT----------CVGA-NEERLTPKWYNEH-GIELVLGTRVKSADVRRK----TLVTATGETISYKILIIAT  121 (479)
Q Consensus        62 ----~~~~~~----------~~~~-~~~~~~~~~~~~~-gv~~~~~~~v~~i~~~~~----~v~~~~g~~~~~d~lviAt  121 (479)
                          ...+..          .... .....+.+.+++. |++++.+++|++++.++.    .+.+.+|+++++|.||.|+
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~Ad  162 (399)
T 2x3n_A           83 DGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGAD  162 (399)
T ss_dssp             TTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECC
T ss_pred             CCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECC
Confidence                000000          0000 0000111223344 899999999999976543    6777788899999999999


Q ss_pred             CCCcccc
Q 011700          122 GARALKL  128 (479)
Q Consensus       122 G~~~~~~  128 (479)
                      |......
T Consensus       163 G~~s~vr  169 (399)
T 2x3n_A          163 GIASYVR  169 (399)
T ss_dssp             CTTCHHH
T ss_pred             CCChHHH
Confidence            9876543

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.74  E-value=1.3e-08  Score=105.36  Aligned_cols=120  Identities=19%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CCC---Cccc-ccc-cCCCCC----C
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--------------YER---PALS-KGY-LLPEAP----A   60 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--------------~~~---~~l~-~~~-~~~~~~----~   60 (479)
                      ++||||||||++|++||..|++.|++   |+|+|+.+...              +..   .... .+. .+.+..    .
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i  183 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV  183 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence            37999999999999999999999987   89999985310              000   0000 000 000000    0


Q ss_pred             CCCCcc--------cccCC------------------cccCCCHhHHHHcCcEEEeCceEEEEECCCc---EEEeCCCcE
Q 011700           61 RLPSFH--------TCVGA------------------NEERLTPKWYNEHGIELVLGTRVKSADVRRK---TLVTATGET  111 (479)
Q Consensus        61 ~~~~~~--------~~~~~------------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~  111 (479)
                      ..+.+.        ...+.                  .....+.+.+++.|++++.+++|+++..++.   .|.+.++++
T Consensus       184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~  263 (549)
T 3nlc_A          184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE  263 (549)
T ss_dssp             CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred             ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence            000000        00000                  0001123344568999999999999986654   366788889


Q ss_pred             EEeceEEeecCCCcc
Q 011700          112 ISYKILIIATGARAL  126 (479)
Q Consensus       112 ~~~d~lviAtG~~~~  126 (479)
                      +.+|.||+|+|..+.
T Consensus       264 i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          264 IKSRHVVLAVGHSAR  278 (549)
T ss_dssp             EECSCEEECCCTTCH
T ss_pred             EECCEEEECCCCChh
Confidence            999999999998874

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.73  E-value=3.3e-08  Score=102.58  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=33.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |++++||||||||+|||+||..|++.|++   |+|+|+++.
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~---V~vlE~~~~   38 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLN---VVVLEARDR   38 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            77779999999999999999999999886   999999875

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.73  E-value=2.5e-08  Score=95.02  Aligned_cols=120  Identities=18%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCcccccccCC----CCC------CCCCC-----ccc
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPVAPYERPALSKGYLLP----EAP------ARLPS-----FHT   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~~~~~~~~l~~~~~~~----~~~------~~~~~-----~~~   67 (479)
                      ++||+|||||++|+++|..|+++ |.+   |+|||+.+..... .....+.+..    ...      ..++.     +..
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~  114 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVV  114 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEE
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEE
Confidence            47999999999999999999997 876   9999998643110 0000000000    000      00000     000


Q ss_pred             c-cCCcccCCCHhHHHH-cCcEEEeCceEEEEECCCcEE---EeC---------CC-----cEEEeceEEeecCCCccc
Q 011700           68 C-VGANEERLTPKWYNE-HGIELVLGTRVKSADVRRKTL---VTA---------TG-----ETISYKILIIATGARALK  127 (479)
Q Consensus        68 ~-~~~~~~~~~~~~~~~-~gv~~~~~~~v~~i~~~~~~v---~~~---------~g-----~~~~~d~lviAtG~~~~~  127 (479)
                      . ........+.+.+.+ .|++++.+++|.++..++..+   .+.         ++     .++++|.||+|||..+..
T Consensus       115 ~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          115 VKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             ESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence            0 000000011222333 699999999999998655433   321         22     579999999999976543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.71  E-value=2.8e-07  Score=91.42  Aligned_cols=58  Identities=19%  Similarity=0.244  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            456777788888999999999999999987 4556655777777 899999999999764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.69  E-value=7.7e-08  Score=97.74  Aligned_cols=58  Identities=24%  Similarity=0.438  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEc--------------CCCcEEEEEeCCCcEE--eccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVD--------------SNGKVVAVNLRDGNRL--PTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~--------------~~g~v~~v~~~~g~~i--~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+.+.+++.|++++.+++|++++.+              +++.+..+.+.+| ++  .+|.||+|+|...
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCH
Confidence            478888889999999999999999999862              2445556778777 68  9999999999753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.68  E-value=2.1e-08  Score=103.28  Aligned_cols=119  Identities=16%  Similarity=0.164  Sum_probs=73.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc------cCCCC----CCCC--CCcccccCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY------LLPEA----PARL--PSFHTCVGA   71 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~------~~~~~----~~~~--~~~~~~~~~   71 (479)
                      .+||+|||||++|+++|..|++.|.+   |+|||+.+...  +.......      +....    ...+  ..+......
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  166 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFS--RHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR  166 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCC--CCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccC--CCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence            58999999999999999999999886   99999986432  11100000      00000    0000  000000000


Q ss_pred             cccCCCHhHHHHcCcEEEeCceEEEEECC-----CcEEEe--C-CC--cEEEeceEEeecCCCccc
Q 011700           72 NEERLTPKWYNEHGIELVLGTRVKSADVR-----RKTLVT--A-TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        72 ~~~~~~~~~~~~~gv~~~~~~~v~~i~~~-----~~~v~~--~-~g--~~~~~d~lviAtG~~~~~  127 (479)
                      .....+.+.+++.|++++.+++|.++..+     ...+.+  . +|  .++.+|+||+|+|..+..
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence            11112334455679999999999999863     235655  3 55  478999999999988754

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.68  E-value=2.6e-07  Score=92.26  Aligned_cols=57  Identities=16%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+.+.+++.|++++.+++|++++. +++.+..+.+.+| ++.+|.||+|+|...
T Consensus       174 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          174 DHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            46778888889999999999999999987 4566667888877 799999999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.67  E-value=4.2e-07  Score=97.44  Aligned_cols=58  Identities=9%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc-EEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|++++++++|++++.+++ .+ .|.+.+|+ ++.+|.||+|+|...
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~-~v-~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDS-QW-QLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSS-SE-EEEEC-CCCCEEESEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC-eE-EEEeCCCcEEEECCEEEECCCcch
Confidence            457788888888999999999999999998444 33 67888887 899999999999764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.67  E-value=2.5e-08  Score=101.44  Aligned_cols=119  Identities=15%  Similarity=0.267  Sum_probs=72.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCcccc-----ccc--CCCCCC---------
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-------ERPALSK-----GYL--LPEAPA---------   60 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-------~~~~l~~-----~~~--~~~~~~---------   60 (479)
                      ++||+|||||++|+++|..|+++|.+   |+|+|+.+...-       .+..+..     .++  ......         
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~---V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGAN---VLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF  102 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCC---EEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence            47999999999999999999999886   999999864210       0000000     000  000000         


Q ss_pred             ------------CCCCcccccC---------CcccCCCHhHHHHcCcEEEeCceEEEEECCCc---EEEeCCCcEEEece
Q 011700           61 ------------RLPSFHTCVG---------ANEERLTPKWYNEHGIELVLGTRVKSADVRRK---TLVTATGETISYKI  116 (479)
Q Consensus        61 ------------~~~~~~~~~~---------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~  116 (479)
                                  .++......+         ......+.+.+++.|++++.+++|.++..++.   .|.+.+|+++.+|.
T Consensus       103 ~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~  182 (447)
T 2i0z_A          103 NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNH  182 (447)
T ss_dssp             CHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSC
T ss_pred             CHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCE
Confidence                        0000000000         00001122334567999999999999875443   36667777799999


Q ss_pred             EEeecCCCc
Q 011700          117 LIIATGARA  125 (479)
Q Consensus       117 lviAtG~~~  125 (479)
                      ||+|||..+
T Consensus       183 VVlAtGg~s  191 (447)
T 2i0z_A          183 VVIAVGGKS  191 (447)
T ss_dssp             EEECCCCSS
T ss_pred             EEECCCCCc
Confidence            999999876

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.67  E-value=9.2e-08  Score=99.02  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=84.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------------------cc-
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------AR-  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~-  200 (479)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                                        .. 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4689999999999999999999999999999875320                                        00 


Q ss_pred             -c-------------C----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEe
Q 011700          201 -L-------------F----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLP  250 (479)
Q Consensus       201 -~-------------~----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~  250 (479)
                       .             .                .+.+.+.+.+.+++.|++++++++|++++. +++.+..|.+.+|+++.
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence             0             0                145666777888889999999999999987 56677789999999999


Q ss_pred             ccEEEEecCCCCCh
Q 011700          251 TDMVVVGIGIRPNT  264 (479)
Q Consensus       251 ~D~Vi~a~G~~p~~  264 (479)
                      +|.||+|+|..+..
T Consensus       266 Ad~VVlA~G~~s~~  279 (549)
T 3nlc_A          266 SRHVVLAVGHSARD  279 (549)
T ss_dssp             CSCEEECCCTTCHH
T ss_pred             CCEEEECCCCChhh
Confidence            99999999998864

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.66  E-value=1.2e-07  Score=94.72  Aligned_cols=121  Identities=13%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccc-cCCCC---------C--------CCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGY-LLPEA---------P--------ARLP   63 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~-~~~~~---------~--------~~~~   63 (479)
                      ++++||+|||||++|+++|..|++.|.+   |+|+|+.+.... ++. ...+ +.+..         .        ....
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~-~~~-g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~   98 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREA-RIF-GGTLDLHKGSGQEAMKKAGLLQTYYDLALPMG   98 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTC-CCC-SCCEECCTTTHHHHHHHTTCHHHHHHHCBCCC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCccc-ccc-CCeeeeCCccHHHHHHhcChHHHHHHhhcccc
Confidence            4568999999999999999999999886   999999864321 100 0000 00000         0        0000


Q ss_pred             -CcccccCC---------------cc--cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeec
Q 011700           64 -SFHTCVGA---------------NE--ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIAT  121 (479)
Q Consensus        64 -~~~~~~~~---------------~~--~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAt  121 (479)
                       .+....+.               ..  ...+.+.+.+  .+++++.+++|++++.+..  ++++.+|+++++|.||.|+
T Consensus        99 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  178 (398)
T 2xdo_A           99 VNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILAN  178 (398)
T ss_dssp             EEEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECS
T ss_pred             eEEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECC
Confidence             00000000               00  0011122222  1357888999999876543  5677788889999999999


Q ss_pred             CCCccc
Q 011700          122 GARALK  127 (479)
Q Consensus       122 G~~~~~  127 (479)
                      |.....
T Consensus       179 G~~S~v  184 (398)
T 2xdo_A          179 GGMSKV  184 (398)
T ss_dssp             CTTCSC
T ss_pred             CcchhH
Confidence            987543

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.65  E-value=3.7e-08  Score=103.05  Aligned_cols=121  Identities=21%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------cccc---CCCCC---CC-CC--
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYL---LPEAP---AR-LP--   63 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~---~~~~~---~~-~~--   63 (479)
                      ++||+|||||++|+++|..|+++|++   |+|||+.+........  +.         .++.   .....   .. +.  
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~  125 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI  125 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence            47999999999999999999999987   9999998653211000  00         0000   00000   00 00  


Q ss_pred             ---Ccccc-c--CC---------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEe--CCC-cEEEeceEEeecCC
Q 011700           64 ---SFHTC-V--GA---------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVT--ATG-ETISYKILIIATGA  123 (479)
Q Consensus        64 ---~~~~~-~--~~---------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~--~~g-~~~~~d~lviAtG~  123 (479)
                         .+... .  ..         .....+.+.+++.|++++.+++|++++.+..  ++.+  .+| +++++|+||.|.|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~  205 (570)
T 3fmw_A          126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG  205 (570)
T ss_dssp             CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred             ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence               00000 0  00         0001122334456999999999999876654  4444  567 68999999999998


Q ss_pred             Cccc
Q 011700          124 RALK  127 (479)
Q Consensus       124 ~~~~  127 (479)
                      ....
T Consensus       206 ~S~v  209 (570)
T 3fmw_A          206 RSTV  209 (570)
T ss_dssp             SCHH
T ss_pred             CchH
Confidence            7644

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.64  E-value=7e-07  Score=88.62  Aligned_cols=73  Identities=18%  Similarity=0.366  Sum_probs=55.4

Q ss_pred             CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          185 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       185 g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+.++.+....+.   +..+.+.+.+.+++.|++++.+++|++++.++++ + .+.+.++ ++.+|.||+|+|..++
T Consensus       134 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~  206 (389)
T 2gf3_A          134 ENYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS  206 (389)
T ss_dssp             TTEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH
T ss_pred             CCceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH
Confidence            356677766655443   4677888888999999999999999999874333 3 4666665 7999999999997643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.64  E-value=1.6e-07  Score=97.98  Aligned_cols=60  Identities=23%  Similarity=0.389  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          204 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       204 ~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      ..+.+.+.+.+++. ||+++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|..+..
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            45777888888888 9999999 999998755677778888999899999999999976644

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.64  E-value=6.9e-08  Score=99.94  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=73.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-cc-c---ccccC---------CCCCC-------CC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-AL-S---KGYLL---------PEAPA-------RL   62 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~l-~---~~~~~---------~~~~~-------~~   62 (479)
                      ++||+|||||++|+++|..|++.|++   |+|||+.+...+... .+ +   ..++.         .....       .+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   83 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW   83 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence            48999999999999999999999987   999999874221110 00 0   00000         00000       00


Q ss_pred             C----C--cccc---cCC----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEe--CCC--cEEEece
Q 011700           63 P----S--FHTC---VGA----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVT--ATG--ETISYKI  116 (479)
Q Consensus        63 ~----~--~~~~---~~~----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~--~~g--~~~~~d~  116 (479)
                      .    .  +...   ...          .....+.+.+.+.|++++.+++|.++..++..   +.+  .+|  .++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~  163 (512)
T 3e1t_A           84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARF  163 (512)
T ss_dssp             SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCE
Confidence            0    0  0000   000          00011223344679999999999999876553   333  456  3799999


Q ss_pred             EEeecCCCccccc
Q 011700          117 LIIATGARALKLE  129 (479)
Q Consensus       117 lviAtG~~~~~~~  129 (479)
                      ||.|+|.......
T Consensus       164 VI~AdG~~S~vr~  176 (512)
T 3e1t_A          164 IVDASGNRTRVSQ  176 (512)
T ss_dssp             EEECCCTTCSSGG
T ss_pred             EEECCCcchHHHH
Confidence            9999998765443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.64  E-value=5e-08  Score=97.55  Aligned_cols=121  Identities=15%  Similarity=0.087  Sum_probs=73.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-c--ccc---------cccCCCCCCCCCCccc--c
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERP-A--LSK---------GYLLPEAPARLPSFHT--C   68 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~-~--l~~---------~~~~~~~~~~~~~~~~--~   68 (479)
                      .++||+|||||++|+++|..|++.|++   |+|+|+.+....... .  +..         ++...........+..  .
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~   80 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDA   80 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEET
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEec
Confidence            468999999999999999999999987   999999865211100 0  000         0000000000000000  0


Q ss_pred             -cCCcc-----------cCCCHhHHHH--cCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCcc
Q 011700           69 -VGANE-----------ERLTPKWYNE--HGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        69 -~~~~~-----------~~~~~~~~~~--~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                       .+...           ...+.+.+.+  .+++++.+++|.+++.+.  .++.+.+|+++.+|.||.|+|....
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           81 LTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             TTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence             00000           0011222322  389999999999997554  3566778889999999999998754

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.64  E-value=6.2e-08  Score=100.86  Aligned_cols=38  Identities=21%  Similarity=0.435  Sum_probs=34.1

Q ss_pred             CC-CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MG-RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~-~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |+ .++||+|||||++|+++|+.|+++|.+   |+|||+.+.
T Consensus         1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~   39 (535)
T 3ihg_A            1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG   39 (535)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred             CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            54 358999999999999999999999987   999999865

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.63  E-value=2.3e-07  Score=90.75  Aligned_cols=96  Identities=16%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------------ccc-CC---------HHHHHHHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------ARL-FT---------PKIASYYE  211 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------------~~~-~~---------~~~~~~~~  211 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+.                     +.. .+         .++.+.+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            469999999999999999999999999999886431                     100 00         67888888


Q ss_pred             HHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          212 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       212 ~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      +.+++.|++++.+++|++++.. ++....+.+.++ ++.+|.||+|+|.
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~~d~vV~AtG~  130 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHF-GERLRVVARDGR-QWLARAVISATGT  130 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEE-TTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred             HHHHHcCCEEEcCCEEEEEEEC-CCcEEEEEeCCC-EEEeCEEEECCCC
Confidence            8899999999999999999873 333322777777 8999999999995

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.62  E-value=1.3e-08  Score=103.75  Aligned_cols=125  Identities=22%  Similarity=0.310  Sum_probs=73.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCc---ccccccC----CCCC-C----CC-------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY-ERPA---LSKGYLL----PEAP-A----RL-------   62 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~-~~~~---l~~~~~~----~~~~-~----~~-------   62 (479)
                      .++||+|||||+||+++|..|++.|++   |+|+|+.+.... ...+   +....+.    .... .    ..       
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   81 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS   81 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence            368999999999999999999999987   999999864211 1100   0000000    0000 0    00       


Q ss_pred             CC----cccc-cCC-----cccCCCHhHHHHcCcEEEeCceEEEEECCCcE---EEeC---CCc--EEEeceEEeecCCC
Q 011700           63 PS----FHTC-VGA-----NEERLTPKWYNEHGIELVLGTRVKSADVRRKT---LVTA---TGE--TISYKILIIATGAR  124 (479)
Q Consensus        63 ~~----~~~~-~~~-----~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~---~g~--~~~~d~lviAtG~~  124 (479)
                      +.    +... .+.     .....+.+.+.+.|++++.+++|++++.++..   |.+.   +|+  ++++|.||.|+|..
T Consensus        82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~  161 (453)
T 3atr_A           82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS  161 (453)
T ss_dssp             TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred             CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence            00    0000 000     00011122334579999999999998766554   3343   565  79999999999987


Q ss_pred             cccccc
Q 011700          125 ALKLEE  130 (479)
Q Consensus       125 ~~~~~~  130 (479)
                      ......
T Consensus       162 s~vr~~  167 (453)
T 3atr_A          162 RSFRSK  167 (453)
T ss_dssp             CTTGGG
T ss_pred             hhhHHh
Confidence            654433

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.61  E-value=9.6e-08  Score=102.26  Aligned_cols=45  Identities=11%  Similarity=0.276  Sum_probs=36.0

Q ss_pred             HHHcCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCc
Q 011700           81 YNEHGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARA  125 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~  125 (479)
                      +++.|++++.+++|.++..++..  |.+.+|.++.+|.||+|||...
T Consensus       427 a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          427 AQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             HHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            44679999999999999765543  4555777899999999999764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.61  E-value=7.6e-08  Score=95.44  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|+++|++|+++|.+   |+|||+...
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~~   51 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM   51 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            58999999999999999999999987   999999854

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.59  E-value=1e-07  Score=96.00  Aligned_cols=61  Identities=16%  Similarity=0.286  Sum_probs=49.8

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      ...+.+.+.+.+++.|++++++++|++|+. +++++  | ..+|+++.+|.||+++|......++
T Consensus       188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll  248 (421)
T 3nrn_A          188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI  248 (421)
T ss_dssp             HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence            467888899999999999999999999986 44554  4 5678899999999999976544444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.57  E-value=1.2e-07  Score=99.42  Aligned_cols=35  Identities=37%  Similarity=0.483  Sum_probs=32.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||+.|+++|.+   |+|+|+.+.
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~  160 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPV  160 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            58999999999999999999999987   999999875

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.56  E-value=1.2e-07  Score=97.77  Aligned_cols=123  Identities=18%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------ccccCCC-CCCCCCC-----
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYLLPE-APARLPS-----   64 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~~~~-~~~~~~~-----   64 (479)
                      .+++||+||||||+|+++|..|+++|.+   |+|||+.+........  +.         -++...- .....+.     
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~   85 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGG   85 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETT
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccc
Confidence            4568999999999999999999999987   9999998653211000  00         0000000 0000000     


Q ss_pred             --cccc-cCC-----------cccCCCHhHHHHcCcEEEeCceEEEEECCCcE--EEeCCCc---EEEeceEEeecCCCc
Q 011700           65 --FHTC-VGA-----------NEERLTPKWYNEHGIELVLGTRVKSADVRRKT--LVTATGE---TISYKILIIATGARA  125 (479)
Q Consensus        65 --~~~~-~~~-----------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--v~~~~g~---~~~~d~lviAtG~~~  125 (479)
                        +... ...           .....+.+.+.+.|++++.+++|++++.+...  +.+.++.   ++++|+||.|.|...
T Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A           86 LPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             EEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred             eecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence              0000 000           00011223345679999999999998765543  4444543   799999999999875


Q ss_pred             cc
Q 011700          126 LK  127 (479)
Q Consensus       126 ~~  127 (479)
                      ..
T Consensus       166 ~V  167 (500)
T 2qa1_A          166 SV  167 (500)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.55  E-value=1.2e-07  Score=92.59  Aligned_cols=116  Identities=16%  Similarity=0.269  Sum_probs=68.3

Q ss_pred             CeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC------ccc--ccccC--C-----------
Q 011700            5 FVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPVAPYE----RP------ALS--KGYLL--P-----------   56 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~~~~~----~~------~l~--~~~~~--~-----------   56 (479)
                      +||+|||||++|+++|..|++   .|++   |+|+|+++.....    +.      ...  ..++.  +           
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~---V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~   78 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLY---LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD   78 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEE---EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCce---EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence            699999999999999999999   7776   9999998642110    00      000  00000  0           


Q ss_pred             -----CCCCCCCCcc----------cccCCc-ccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEE
Q 011700           57 -----EAPARLPSFH----------TCVGAN-EERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILI  118 (479)
Q Consensus        57 -----~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lv  118 (479)
                           .....++...          ...... .......+.+..+++++.+++|.+++.++.  +|.+.+|+++.+|+||
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV  158 (342)
T 3qj4_A           79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV  158 (342)
T ss_dssp             HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred             HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence                 0000000000          000000 001112233345899999999999986543  5666778778999999


Q ss_pred             eecCC
Q 011700          119 IATGA  123 (479)
Q Consensus       119 iAtG~  123 (479)
                      +|+..
T Consensus       159 ~A~p~  163 (342)
T 3qj4_A          159 LTMPV  163 (342)
T ss_dssp             ECSCH
T ss_pred             ECCCH
Confidence            99974

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.54  E-value=1.1e-07  Score=99.63  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||++|++||+.|+++|.+   |+|||+.+.
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~  155 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPF  155 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            57999999999999999999999987   999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.52  E-value=2.9e-07  Score=89.16  Aligned_cols=100  Identities=15%  Similarity=0.208  Sum_probs=80.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------ccc---CCHHHHHHHHHHHHhCCcEEEcC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARL---FTPKIASYYEEYYKSKGVKFVKG  224 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~~---~~~~~~~~~~~~l~~~GV~i~~~  224 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+.+-               +..   ...++.+.+.+.+++.|++++++
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999976421               100   13677788888888899999999


Q ss_pred             CceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC---CCCh
Q 011700          225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI---RPNT  264 (479)
Q Consensus       225 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~---~p~~  264 (479)
                      ++|.+++..+++ ...+.+.+++ +.+|.|++|+|.   .|..
T Consensus        88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~  128 (332)
T 3lzw_A           88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRK  128 (332)
T ss_dssp             CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred             CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence            999999874332 3457777775 999999999999   6654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.50  E-value=4e-07  Score=93.74  Aligned_cols=121  Identities=18%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCc--cc---------cccc---CCCCCCC---CCC--
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPA--LS---------KGYL---LPEAPAR---LPS--   64 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~--l~---------~~~~---~~~~~~~---~~~--   64 (479)
                      ++||+||||||+|+++|..|+++|.+   |+|||+.+........  +.         -++.   .......   +..  
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   88 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRP   88 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceeccee
Confidence            58999999999999999999999987   9999998653211000  00         0000   0000000   000  


Q ss_pred             cccc-cC--C---------cccCCCHhHHHHcCcEEEeCceEEEEECCCc--EEEeCCCc---EEEeceEEeecCCCccc
Q 011700           65 FHTC-VG--A---------NEERLTPKWYNEHGIELVLGTRVKSADVRRK--TLVTATGE---TISYKILIIATGARALK  127 (479)
Q Consensus        65 ~~~~-~~--~---------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~---~~~~d~lviAtG~~~~~  127 (479)
                      +... ..  .         .....+.+.+.+.|++++.+++|++++.+..  ++.+.++.   ++++|+||.|.|.....
T Consensus        89 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~V  168 (499)
T 2qa2_A           89 VDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRSTV  168 (499)
T ss_dssp             EEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred             cccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence            0000 00  0         0001122334567999999999999976544  45555553   79999999999987543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.50  E-value=2.2e-07  Score=92.76  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=33.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |.+++||+|||||++|+++|++|+++|.+   |+|+|+.+.
T Consensus         1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~---V~vlE~~~~   38 (397)
T 2oln_A            1 MTESYDVVVVGGGPVGLATAWQVAERGHR---VLVLERHTF   38 (397)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence            66678999999999999999999999987   999999864

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.49  E-value=1.7e-07  Score=93.91  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc--c---------ccccCC--CCCCCCCCcccc-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL--S---------KGYLLP--EAPARLPSFHTC-   68 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l--~---------~~~~~~--~~~~~~~~~~~~-   68 (479)
                      +++||+|||||++|+++|..|+++|++   |+|+|+.+.........  .         -++...  ........+... 
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~   98 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD   98 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence            468999999999999999999999987   99999986421100000  0         000000  000000000000 


Q ss_pred             -c-CC----------------cc----cCCCHhHHHH--cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecC
Q 011700           69 -V-GA----------------NE----ERLTPKWYNE--HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATG  122 (479)
Q Consensus        69 -~-~~----------------~~----~~~~~~~~~~--~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG  122 (479)
                       . +.                ..    ...+...+.+  ..++++.+++|++++.++.  ++.+.+|+++.+|.||.|+|
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A           99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence             0 00                00    0011122221  1278889999999876654  45667888999999999999


Q ss_pred             CCccc
Q 011700          123 ARALK  127 (479)
Q Consensus       123 ~~~~~  127 (479)
                      .....
T Consensus       179 ~~S~v  183 (407)
T 3rp8_A          179 SHSAL  183 (407)
T ss_dssp             TTCSS
T ss_pred             cChHH
Confidence            87543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.49  E-value=3.4e-07  Score=90.51  Aligned_cols=57  Identities=12%  Similarity=0.057  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +..+.+.+.+.+++.|++++.+++|++++.+ ++. ..|.+.+| ++.+|.||+|+|...
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g-~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAG-SYRAAVLVNAAGAWC  209 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSE-EEEESEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCC-EEEcCEEEECCChhH
Confidence            4567788888889999999999999999874 333 46777777 899999999999653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.48  E-value=3.7e-07  Score=90.05  Aligned_cols=34  Identities=18%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+|||||++|+++|++|+++|.+   |+|||+.+.
T Consensus         3 ~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~~~   36 (372)
T 2uzz_A            3 YDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAHMP   36 (372)
T ss_dssp             EEEEESCTTHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            8999999999999999999999987   999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.48  E-value=8.3e-07  Score=86.20  Aligned_cols=97  Identities=12%  Similarity=0.258  Sum_probs=78.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------c-----------ccCCHHHHHHHHHHHHhCCcEEEcC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A-----------RLFTPKIASYYEEYYKSKGVKFVKG  224 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~-----------~~~~~~~~~~~~~~l~~~GV~i~~~  224 (479)
                      .+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.       +           .....++.+.+.+.+++.+++++.+
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   85 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG   85 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence            579999999999999999999999999999875431       0           0012567777888888889999999


Q ss_pred             CceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          225 TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       225 ~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      ++|.+++..++  ...+.+.+++++.+|.|++|+|..
T Consensus        86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred             CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence            99999987433  345777888899999999999984

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.47  E-value=3.9e-07  Score=88.43  Aligned_cols=101  Identities=16%  Similarity=0.210  Sum_probs=79.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC----cc------------ccc----cCCHHHHHHHHHHHHhCCcEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA----HC------------MAR----LFTPKIASYYEEYYKSKGVKF  221 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~~------------l~~----~~~~~~~~~~~~~l~~~GV~i  221 (479)
                      .++|+|||+|+.|+.+|..|++.|.+|+++++.+    .+            ++.    ...+++.+.+.+.+++.|+++
T Consensus        22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i  101 (338)
T 3itj_A           22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI  101 (338)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            4789999999999999999999999999999843    11            111    013577888889999999999


Q ss_pred             EcCCceEEEEEcCCCcEEEEEe---CCCcEEeccEEEEecCCCCChh
Q 011700          222 VKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       222 ~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.++ +.+++.. ++.+ .+.+   .++.++.+|.+++|+|.+|...
T Consensus       102 ~~~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~  145 (338)
T 3itj_A          102 ITET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM  145 (338)
T ss_dssp             ECSC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred             EEeE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence            9998 8999863 3333 4555   3667899999999999877653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.46  E-value=1.1e-06  Score=86.33  Aligned_cols=100  Identities=14%  Similarity=0.182  Sum_probs=80.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------c--------c---cCCHHHHHHHHHHHHhCCcEEEc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------A--------R---LFTPKIASYYEEYYKSKGVKFVK  223 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------~--------~---~~~~~~~~~~~~~l~~~GV~i~~  223 (479)
                      ..+++|||+|+.|+.+|..|++.|.+|+++++.+.+-       +        .   ....++.+.+.+.+++.+++++.
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   93 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL   93 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence            3579999999999999999999999999999875431       1        0   01256777888888889999999


Q ss_pred             CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       224 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +++|.+++..+++. ..+.+.+|+++.+|.|++|+|..+
T Consensus        94 ~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           94 NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTCS
T ss_pred             CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCCc
Confidence            99999998743333 357788888999999999999843

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.46  E-value=2.4e-07  Score=94.28  Aligned_cols=99  Identities=18%  Similarity=0.318  Sum_probs=74.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ......+.+.+++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  220 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL-------------------PTMD----LEVSRAAERVFKK  220 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.+++|.+++.+++.  +.+.+++++.+|.||+|+|.+|..+
T Consensus       221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~  267 (455)
T 2yqu_A          221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE  267 (455)
T ss_dssp             HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred             CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence            89999999999999876543  4455788899999999999988753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.45  E-value=7.4e-07  Score=85.80  Aligned_cols=100  Identities=10%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec--Cccc--------cc---cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM--------AR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~--~~~l--------~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.  ..+.        +.   ....++.+.+.+.+++.|++++. .++.+
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~   94 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK   94 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence            47999999999999999999999999999985  1111        11   11257778888888999999999 88999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ++.+ ++. ..+.+.+++++.+|.+++|+|..|...
T Consensus        95 i~~~-~~~-~~v~~~~g~~~~~d~lvlAtG~~~~~~  128 (323)
T 3f8d_A           95 IENR-GDE-FVVKTKRKGEFKADSVILGIGVKRRKL  128 (323)
T ss_dssp             EEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred             EEec-CCE-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence            9873 332 357788888999999999999887654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.45  E-value=2.6e-07  Score=92.04  Aligned_cols=121  Identities=14%  Similarity=0.110  Sum_probs=72.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCc-cccc---ccCCCC--------CCCCCCccc-
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA---PYERPA-LSKG---YLLPEA--------PARLPSFHT-   67 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~---~~~~~~-l~~~---~~~~~~--------~~~~~~~~~-   67 (479)
                      ++||+|||||++|+++|..|++.|.+   |+|+|+.+..   .-.+.. +...   .+..-.        ......+.. 
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~   78 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA   78 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence            38999999999999999999999987   9999998631   000000 0000   000000        000000000 


Q ss_pred             ------------cc-CC--------cccCCCHhHHHHcCcEEEeCceEEEEECCC---cEEEe-CCCc--EEEeceEEee
Q 011700           68 ------------CV-GA--------NEERLTPKWYNEHGIELVLGTRVKSADVRR---KTLVT-ATGE--TISYKILIIA  120 (479)
Q Consensus        68 ------------~~-~~--------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~---~~v~~-~~g~--~~~~d~lviA  120 (479)
                                  .. +.        .....+.+.+.+.|++++.+++|+++..+.   ..+.+ .+|+  ++++|.||.|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC  158 (394)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred             ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence                        00 00        000112223345699999999999997642   45666 6776  7999999999


Q ss_pred             cCCCccc
Q 011700          121 TGARALK  127 (479)
Q Consensus       121 tG~~~~~  127 (479)
                      +|.....
T Consensus       159 dG~~S~v  165 (394)
T 1k0i_A          159 DGFHGIS  165 (394)
T ss_dssp             CCTTCST
T ss_pred             CCCCcHH
Confidence            9987544

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.45  E-value=1.9e-07  Score=93.77  Aligned_cols=39  Identities=18%  Similarity=0.370  Sum_probs=32.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||+++||+|||||++|+++|..|++.|.++  |+|+|+.+.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~~~   39 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE   39 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECCCC
Confidence            788899999999999999999999988652  899999864

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.45  E-value=8.1e-07  Score=89.17  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------------------------c-------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------L-------------  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------------------------~-------------  201 (479)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                           .             
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            458999999999999999999999999999987642100                           0             


Q ss_pred             -----------------------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          202 -----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       202 -----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                                             ...++.+.+.+.+++.|++++++++|++++.++ +. ..|.+.+| ++.+|.||+|+
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~-~~-~~V~~~~g-~i~ad~VIlAt  183 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTA-SG-FRVTTSAG-TVDAASLVVAS  183 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEET-TE-EEEEETTE-EEEESEEEECC
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeC-CE-EEEEECCc-EEEeeEEEECC
Confidence                                   012566677788888999999999999998743 33 45777777 89999999999


Q ss_pred             CCCCC
Q 011700          259 GIRPN  263 (479)
Q Consensus       259 G~~p~  263 (479)
                      |..+.
T Consensus       184 G~~S~  188 (417)
T 3v76_A          184 GGKSI  188 (417)
T ss_dssp             CCSSC
T ss_pred             CCccC
Confidence            98874

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.45  E-value=2.5e-07  Score=93.65  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=77.5

Q ss_pred             CCEEEECCChHHHHHHHHHhh---CCCeEEEEeecCcccccc----------CCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          163 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMARL----------FTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      ++++|||+|+.|+.+|..|++   .+.+|+++++.+.+....          ...++...+.+.+++.||+++. .++++
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999999   799999999987642110          1123333456778889999985 57899


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  266 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l  266 (479)
                      ++.+ +.   .+.+.+++++.+|.+++|+|.+|+...
T Consensus        84 id~~-~~---~V~~~~g~~i~~d~lviAtG~~~~~~~  116 (437)
T 3sx6_A           84 IDAE-AQ---NITLADGNTVHYDYLMIATGPKLAFEN  116 (437)
T ss_dssp             EETT-TT---EEEETTSCEEECSEEEECCCCEECGGG
T ss_pred             EEcC-CC---EEEECCCCEEECCEEEECCCCCcCccc
Confidence            9762 22   477888989999999999999988653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.44  E-value=7.7e-07  Score=88.46  Aligned_cols=100  Identities=19%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-c-cCCH---------HHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-R-LFTP---------KIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~-~~~~---------~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      ..+|+|||+|+.|+.+|..|...+.+|+++++++.+.- + .++.         ++.....+.+++.||+++++++++++
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i   88 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI   88 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence            46899999999999999999888999999998875311 1 0111         11122356677899999999999999


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+ +.   .+.+.+|+++.+|.+++|||.+|...
T Consensus        89 d~~-~~---~v~~~~g~~~~yd~lvlAtG~~p~~p  119 (385)
T 3klj_A           89 DPN-NK---LVTLKSGEKIKYEKLIIASGSIANKI  119 (385)
T ss_dssp             ETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             ECC-CC---EEEECCCCEEECCEEEEecCCCcCCC
Confidence            862 32   47788999999999999999887654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.44  E-value=1.7e-07  Score=94.36  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      ...+.+.+.+.++++|++++++++|++|+. +++++..|.+. |+++.+|.||+++|......++
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            366888889999999999999999999987 45666667664 7789999999999876554444

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.43  E-value=1.2e-06  Score=90.95  Aligned_cols=102  Identities=23%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             CCEEEECCChHHHHHHHHHh-hCCCeEEEEeecCccc--------cc------------cC----------------CHH
Q 011700          163 GNAVVIGGGYIGMECAASLV-INKINVTMVFPEAHCM--------AR------------LF----------------TPK  205 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~-~~g~~Vtlv~~~~~~l--------~~------------~~----------------~~~  205 (479)
                      .+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+.        +.            .+                .++
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 8999999999865321        00            01                246


Q ss_pred             HHHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC--CCCh
Q 011700          206 IASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNT  264 (479)
Q Consensus       206 ~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~--~p~~  264 (479)
                      +.+.+.+..++.|+  +++++++|++++.++++....|.+.+|+++.+|.||+|+|.  +|..
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~  151 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF  151 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence            77778888888898  89999999999875554556788899999999999999994  5544

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.43  E-value=9.9e-07  Score=91.80  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=82.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--------c------------cC----------------CHHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R------------LF----------------TPKI  206 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------~------------~~----------------~~~~  206 (479)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..        .            .+                .+++
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            5799999999999999999999999999998653210        0            01                2467


Q ss_pred             HHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--CCCCh
Q 011700          207 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  264 (479)
Q Consensus       207 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--~~p~~  264 (479)
                      .+.+.+.+++.|+  +++++++|++++.+++.....|.+.+|+++.+|.||+|+|  .+|..
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~  163 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT  163 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence            7788888888888  8999999999987555555678889999999999999999  45544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.42  E-value=1e-06  Score=84.60  Aligned_cols=101  Identities=14%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC--ccc---------c--ccCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM---------A--RLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~~l---------~--~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +++|||+|+.|+.+|..|++.|.+|+++++..  .+.         .  ....+++.+.+.+.+++.|++++.++++..+
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   82 (310)
T 1fl2_A            3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence            58999999999999999999999999997531  111         0  0012567788888888999999999999999


Q ss_pred             EEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          231 DVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       231 ~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +.+.+ +....+.+.+|+++.+|.+++|+|.+|..
T Consensus        83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~  117 (310)
T 1fl2_A           83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN  117 (310)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            75322 22346778888899999999999987754

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.42  E-value=4.7e-07  Score=95.07  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR------GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||+++|..|+++      |.+   |+|||+.+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~   75 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAH   75 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCC
Confidence            48999999999999999999998      887   999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.41  E-value=1.5e-06  Score=86.17  Aligned_cols=99  Identities=22%  Similarity=0.270  Sum_probs=80.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...                                         
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            468999999999999999999999999999987543210                                         


Q ss_pred             --cCC-----------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          201 --LFT-----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       201 --~~~-----------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                        .++           .++.+.+.+.+++.|++++.++++++++.  ++   .+.+.+|+++.+|.||.|+|..+...
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~vr  163 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKVR  163 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHHH
Confidence              000           45567777888889999999999999975  44   57788898999999999999987653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.40  E-value=1.6e-06  Score=82.44  Aligned_cols=100  Identities=16%  Similarity=0.264  Sum_probs=77.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc---------ccc---cCCHHHHHHHHHHHHhC-CcEEEcCCceEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---------MAR---LFTPKIASYYEEYYKSK-GVKFVKGTVLSS  229 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~---------l~~---~~~~~~~~~~~~~l~~~-GV~i~~~~~v~~  229 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++.+..         ++.   ....++.+.+.+.+++. +++++.+ ++++
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~   81 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD   81 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence            46999999999999999999999999999975321         111   11246777778888776 7888765 7899


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ++.++++  ..+.+.+++++.+|.|++|+|.+|...
T Consensus        82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~  115 (297)
T 3fbs_A           82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP  115 (297)
T ss_dssp             EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred             EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence            9874322  467888998999999999999987543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.39  E-value=3.1e-07  Score=95.58  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=33.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHH---cCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTK---RGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~---~g~~~~~V~lie~~~~   41 (479)
                      |++.+||||||||++|+++|..|++   .|.+   |+|||+.+.
T Consensus         2 ~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~---V~liE~~~~   42 (538)
T 2aqj_A            2 NKPIKNIVIVGGGTAGWMAASYLVRALQQQAN---ITLIESAAI   42 (538)
T ss_dssp             CCBCCEEEEECCSHHHHHHHHHHHHHCCSSCE---EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhhcCCCCE---EEEECCCCC
Confidence            1456899999999999999999999   8876   999999754

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.38  E-value=2.4e-07  Score=86.44  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |+  +||+|||||||||+||..|+++|++   |+|+|+.+.
T Consensus         1 Mt--~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~   36 (336)
T 3kkj_A            1 MT--VPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRG   36 (336)
T ss_dssp             -C--CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CC--CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence            65  8999999999999999999999998   999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.38  E-value=1.8e-06  Score=82.91  Aligned_cols=99  Identities=15%  Similarity=0.256  Sum_probs=77.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc---c--------ccc---cC-CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          164 NAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH---C--------MAR---LF-TPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~---~--------l~~---~~-~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      +++|||+|+.|+.+|..|++.|. +|+++++...   +        .+.   .. .+++.+.+.+.+++.|++++. .++
T Consensus         3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v   81 (311)
T 2q0l_A            3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV   81 (311)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence            58999999999999999999999 9999998521   0        111   11 256777888888889999998 688


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .+++.+ ++. ..+.+.+++++.+|.|++|+|..|...
T Consensus        82 ~~i~~~-~~~-~~v~~~~g~~~~~~~vv~AtG~~~~~~  117 (311)
T 2q0l_A           82 QRVSKK-DSH-FVILAEDGKTFEAKSVIIATGGSPKRT  117 (311)
T ss_dssp             EEEEEE-TTE-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEc-CCE-EEEEEcCCCEEECCEEEECCCCCCCCC
Confidence            998863 332 346678888999999999999876543

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.37  E-value=1.2e-06  Score=91.14  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||++|++ |.+   |+|+|+.+.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~---V~vlEk~~~   41 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQ---VIVLSKGPV   41 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSC---EEEECSSCT
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCc---EEEEECCCC
Confidence            5899999999999999999999 887   999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.37  E-value=4.9e-07  Score=91.31  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccCCHH----------HHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPK----------IASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~----------~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      |+|+|||+|+.|+.+|..|++++  .+||++++++.+.-...-+.          +...+.+.+++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999865  78999999876432111111          1112234567789999877 58999


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +.  +.+  .|.+.+|+++++|.+++|+|.++.
T Consensus        82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred             EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence            86  232  477899999999999999998753

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.37  E-value=1.6e-06  Score=89.64  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||||||+|+||++||++|+++|.+   |+|||+.+.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~---V~vlEk~~~   75 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGAD---VLVLERTSG   75 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            358999999999999999999999987   999999875

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.36  E-value=2.7e-06  Score=86.37  Aligned_cols=100  Identities=26%  Similarity=0.350  Sum_probs=80.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------c-----------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------R-----------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~-----------------------  200 (479)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+.+..                   .                       
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            5799999999999999999999999999998653210                   0                       


Q ss_pred             -------------------cC-----CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEE
Q 011700          201 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       201 -------------------~~-----~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                                         .+     ...+.+.+.+.+++.||+++++++|+++.. +++.+..|.+.+|+++.+|.||+
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEE
Confidence                               00     134455667777889999999999999986 45666778888888899999999


Q ss_pred             ecCCCCC
Q 011700          257 GIGIRPN  263 (479)
Q Consensus       257 a~G~~p~  263 (479)
                      |+|..+.
T Consensus       186 AtGg~s~  192 (447)
T 2i0z_A          186 AVGGKSV  192 (447)
T ss_dssp             CCCCSSS
T ss_pred             CCCCCcC
Confidence            9998773

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.36  E-value=2.4e-06  Score=87.15  Aligned_cols=103  Identities=16%  Similarity=0.227  Sum_probs=77.3

Q ss_pred             CCEEEECCChHHHHHHHHHhh---CCCe---EEEEeecCcccc-------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVI---NKIN---VTMVFPEAHCMA-------------------------------------  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~---~g~~---Vtlv~~~~~~l~-------------------------------------  199 (479)
                      ++|+|||+|+.|+.+|..|.+   .|.+   |+++++.+.+..                                     
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            579999999999999999999   9999   999998754210                                     


Q ss_pred             c------------cC--CHHHHHHHHHHHHhCCcE--EEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEec
Q 011700          200 R------------LF--TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGI  258 (479)
Q Consensus       200 ~------------~~--~~~~~~~~~~~l~~~GV~--i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~  258 (479)
                      .            .+  ..++.+.+.+.+++.|++  ++++++|.+++..+++....|.+.+   |  .++.+|.||+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt  162 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT  162 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence            0            00  145666777778888998  8999999999874432223455543   4  578999999999


Q ss_pred             C--CCCChh
Q 011700          259 G--IRPNTS  265 (479)
Q Consensus       259 G--~~p~~~  265 (479)
                      |  .+|+..
T Consensus       163 G~~s~p~~p  171 (464)
T 2xve_A          163 GHFSTPYVP  171 (464)
T ss_dssp             CSSSSBCCC
T ss_pred             CCCCCCccC
Confidence            9  677654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.35  E-value=2.9e-06  Score=84.74  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=78.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------------cc------c---------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------AR------L---------------------  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------~~------~---------------------  201 (479)
                      -+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.              ..      .                     
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            479999999999999999999999999999876430              00      0                     


Q ss_pred             ----------------------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC---CCcEEEEEeCCCcEEeccEEEE
Q 011700          202 ----------------------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLRDGNRLPTDMVVV  256 (479)
Q Consensus       202 ----------------------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~---~g~v~~v~~~~g~~i~~D~Vi~  256 (479)
                                            ...++.+.+.+.+++.||++++++.+++++.++   ++. ..+.+.++ ++.+|.||+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence                                  134555677788888999999999999998631   233 35677666 799999999


Q ss_pred             ecCCCCCh
Q 011700          257 GIGIRPNT  264 (479)
Q Consensus       257 a~G~~p~~  264 (479)
                      |+|..+..
T Consensus       163 AtG~~s~p  170 (401)
T 2gqf_A          163 ATGGLSMP  170 (401)
T ss_dssp             CCCCSSCG
T ss_pred             CCCCccCC
Confidence            99998854

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.35  E-value=6.2e-06  Score=81.58  Aligned_cols=98  Identities=17%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------------------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------------  200 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+-..                                           
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            4899999999999999999999999999986432100                                           


Q ss_pred             ------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEEEecCCCC
Q 011700          201 ------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       201 ------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi~a~G~~p  262 (479)
                                  .++ ..+.+.+.+..++.|++++.++++..+.. +++.+..+... ++  .++.+|.||-|.|...
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        001 23455667777888999999999999887 45555444432 33  3688999999999654

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.35  E-value=2.7e-06  Score=81.48  Aligned_cols=100  Identities=12%  Similarity=0.196  Sum_probs=71.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----------cc--cccCCHHHHHHHHHHHHhCC-cEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CM--ARLFTPKIASYYEEYYKSKG-VKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----------~l--~~~~~~~~~~~~~~~l~~~G-V~i~~~~~v~~i  230 (479)
                      .|+|||+|+.|+.+|..+++.|.+|+++++...          +.  +....+++.+...+.+.+.+ +.++.. .+..+
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   86 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEK-TVVMI   86 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEEC-CEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEee-EEEEe
Confidence            589999999999999999999999999987531          10  01123556666666665555 555544 45666


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ...+++. ..+.+.+|+++.+|.||+|||.+|...
T Consensus        87 ~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~p  120 (304)
T 4fk1_A           87 TKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEFP  120 (304)
T ss_dssp             EECTTSC-EEEEETTCCEEEEEEEEECCCCEEECC
T ss_pred             eecCCCc-EEEEECCCCEEEeCEEEEccCCccccc
Confidence            5533433 467889999999999999999887543

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.34  E-value=8.7e-07  Score=88.84  Aligned_cols=97  Identities=20%  Similarity=0.324  Sum_probs=75.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+... .           .   .++       ........+.+++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~-----------~---~~~-------~~~~~~l~~~l~~  199 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLM-S-----------R---AAP-------ATLADFVARYHAA  199 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-T-----------T---TSC-------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCccc-c-----------c---ccC-------HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999885310 0           0   000       0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++ ++ .+.+.+|+++.+|.||+|+|.+|..
T Consensus       200 ~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          200 QGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             TTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred             cCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence            999999999999998 44 7888888899999999999988763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.33  E-value=2.1e-06  Score=83.06  Aligned_cols=101  Identities=14%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------cccc----CCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MARL----FTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~~----~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...   +        .+..    ...++.+.+.+.+++.|++++. .++
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v   87 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV   87 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence            4799999999999999999999999999998721   0        1110    1246777788888899999998 578


Q ss_pred             EEEEEcC-CCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          228 SSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       228 ~~i~~~~-~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .+++... +.....+.+.+|+++.+|.+++|+|.+|..
T Consensus        88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK  125 (325)
T ss_dssp             EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence            8888731 221124556788899999999999987764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.33  E-value=4.9e-06  Score=81.80  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=75.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecC------------ccccc----------------------------c
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA------------HCMAR----------------------------L  201 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~------------~~l~~----------------------------~  201 (479)
                      .+++|||+|+.|+.+|..|++.|. +|+++++.+            +++..                            .
T Consensus         5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   84 (369)
T 3d1c_A            5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH   84 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence            469999999999999999999999 999999875            00000                            0


Q ss_pred             CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          202 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       202 ~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      .+ .++.+.+.+.+++.|++++.++.|.+++.++++  ..+.+.++ ++.+|.||+|+|..+.
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF  144 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence            01 345566777778899999999999999874333  24666666 6999999999998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.33  E-value=2.1e-06  Score=88.52  Aligned_cols=36  Identities=17%  Similarity=0.428  Sum_probs=32.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.+||+|||||++|+++|+.|+++|++   |+|+|+.+.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~~~   37 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQDL   37 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECCCC
Confidence            568999999999999999999999987   999999763

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.33  E-value=9.7e-07  Score=89.61  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=74.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ..++++|||+|+.|+.+|..|++.|.+   |+++++.+... .     .         .++       ......+.+.++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-~-----~---------~~~-------~~~~~~l~~~l~  202 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPL-G-----V---------YLD-------KEFTDVLTEEME  202 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-T-----T---------TCC-------HHHHHHHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCcccc-c-----c---------cCC-------HHHHHHHHHHHH
Confidence            357999999999999999999998876   99999885311 0     0         000       011133456677


Q ss_pred             HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      +.|++++.++.|.+++.+++  .+.+ ++.++++|.||+|+|.+|..+
T Consensus       203 ~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~  249 (447)
T 1nhp_A          203 ANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA  249 (447)
T ss_dssp             TTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred             hCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence            88999999999999987643  2445 567899999999999988654

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.33  E-value=1.2e-06  Score=87.49  Aligned_cols=100  Identities=23%  Similarity=0.325  Sum_probs=73.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccCCHHHH---------HHHHHHHHhCCcEEEcCCceEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIA---------SYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~---------~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +|||+|||+|+.|+.+|..|++.+  .+|+++++++..........+.         ..-.+.+.++||+++.+ ++++|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            789999999999999999998765  5899999887543221111111         00123456789999876 58888


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  266 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l  266 (479)
                      +.  +.+  .+.+.+|+++.+|.+++|+|.+++..-
T Consensus        81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~  112 (401)
T 3vrd_B           81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDK  112 (401)
T ss_dssp             ET--TTT--EEEETTSCEEECSEEEECCCEEECGGG
T ss_pred             Ec--cCc--EEEecccceeecceeeeccCCccccCC
Confidence            76  232  467889999999999999999887653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.31  E-value=1.3e-06  Score=91.59  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||+|++|+++|..|+++|.+   |+|+|+.+.
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~  160 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPI  160 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence            47999999999999999999999887   999999875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.31  E-value=9.1e-07  Score=88.30  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++|+||||||+|+++|..|+++|++   |+|+|+.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCC
Confidence            5899999999999999999999987   999999864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.31  E-value=4.3e-07  Score=91.11  Aligned_cols=98  Identities=22%  Similarity=0.332  Sum_probs=74.5

Q ss_pred             CCEEEECCChHHHHHHHHHhh---CCCeEEEEeecCccccc----------cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          163 GNAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      ++|+|||+|+.|+++|..|++   .|.+|+++++++.+...          ....++...+.+.+++.|++++.+ ++++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~   80 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK   80 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence            579999999999999999999   89999999988754211          012233344667778889999988 7888


Q ss_pred             EEEcCCCcEEEEEeCCCc----EEeccEEEEecCCCCChh
Q 011700          230 FDVDSNGKVVAVNLRDGN----RLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~----~i~~D~Vi~a~G~~p~~~  265 (479)
                      ++.  +.+  .+.+.+++    ++++|.||+|+|.+|+..
T Consensus        81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~  116 (409)
T 3h8l_A           81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE  116 (409)
T ss_dssp             EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred             EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence            875  222  34555554    399999999999988865

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.31  E-value=1.8e-06  Score=89.78  Aligned_cols=102  Identities=17%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc-------------------------c---------cc--CCHHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------------------------A---------RL--FTPKI  206 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-------------------------~---------~~--~~~~~  206 (479)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+-                         +         ..  -.+++
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            479999999999999999999999999999875320                         0         00  12577


Q ss_pred             HHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC--CCCCh
Q 011700          207 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG--IRPNT  264 (479)
Q Consensus       207 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G--~~p~~  264 (479)
                      .+.+.+..++.|+  +++++++|++++.+++.....|.+.+|+++.+|.||+|+|  .+|..
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~  151 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM  151 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence            7788888888887  7889999999987555455678889999999999999999  55554

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=8.8e-07  Score=90.22  Aligned_cols=97  Identities=20%  Similarity=0.316  Sum_probs=72.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ........+.+++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  224 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL-------------------PTYD----SELTAPVAESLKK  224 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeC--CC--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTA--TG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~--~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.|.+++. ++ +.+.  +|  +++.+|.||+|+|.+|..+
T Consensus       225 ~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~  271 (458)
T 1lvl_A          225 LGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK  271 (458)
T ss_dssp             HTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred             CCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence            8999999999999987 44 4433  45  6899999999999988754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.30  E-value=9.3e-07  Score=87.86  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+... .           .   ..+       ......+.+.+++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~-~-----------~---~~~-------~~~~~~l~~~l~~  199 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVM-P-----------G---LLH-------PAAAKAVQAGLEG  199 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-T-----------T---TSC-------HHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchh-h-----------c---ccC-------HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999875310 0           0   000       0011334566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.+++|.+++.++.  .+.+.+|+++.+|.||+|+|.+|..
T Consensus       200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence            8999999999999876543  5667788899999999999988764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.30  E-value=9.6e-07  Score=96.76  Aligned_cols=38  Identities=26%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~   41 (479)
                      |+.++||||||||++|+++|++|+++|. +   |+|||+.+.
T Consensus         1 m~~~~dVvIIGgGi~Gls~A~~La~~G~~~---V~vlE~~~~   39 (830)
T 1pj5_A            1 MASTPRIVIIGAGIVGTNLADELVTRGWNN---ITVLDQGPL   39 (830)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSCT
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHhCCCCc---EEEEeCCCC
Confidence            6667999999999999999999999997 5   999999864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.30  E-value=6.6e-07  Score=86.59  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|+++|++|+++  |++   |+|||+.+.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~~~  115 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAGVA  115 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCCCc
Confidence            58999999999999999999997  776   999999864

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.30  E-value=4e-06  Score=83.62  Aligned_cols=101  Identities=22%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  199 (479)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..                                           
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            4799999999999999999999999999998643200                                           


Q ss_pred             --c-------------cC-CHHHHHHHHHHHHhC-CcEEEcCCceEEEEEcCCCcEE-EEEeCCCcEEeccEEEEecCCC
Q 011700          200 --R-------------LF-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       200 --~-------------~~-~~~~~~~~~~~l~~~-GV~i~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                        .             .+ ...+.+.+.+.+++. |++++.++++++++.+++ .+. .+.+.+|+++.+|.||.|.|..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~~  165 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGIA  165 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCTT
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCCC
Confidence              0             00 124566677777777 999999999999987443 342 5778899899999999999987


Q ss_pred             CCh
Q 011700          262 PNT  264 (479)
Q Consensus       262 p~~  264 (479)
                      +..
T Consensus       166 s~v  168 (399)
T 2x3n_A          166 SYV  168 (399)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.29  E-value=4.4e-06  Score=86.46  Aligned_cols=104  Identities=13%  Similarity=0.186  Sum_probs=81.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC--ccc-----------cccCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA--HCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~--~~l-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      ...+++|||+|+.|+.+|..|++.|.+|+++++..  .+.           +....+++.+.+.+.+++.|++++.++++
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v  290 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA  290 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence            34579999999999999999999999999997531  111           01123577888888899999999999999


Q ss_pred             EEEEEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          228 SSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       228 ~~i~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .++..+.+ +....+.+.+|+++.+|.|++|+|.+|..
T Consensus       291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~  328 (521)
T 1hyu_A          291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN  328 (521)
T ss_dssp             EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred             EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence            99975221 22346788889899999999999987654

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.29  E-value=1.1e-06  Score=93.36  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=32.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~   41 (479)
                      .++||+||||||+|+++|..|++ .|.+   |+|||+.+.
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~   67 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG   67 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence            35799999999999999999999 8987   999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.29  E-value=1.4e-06  Score=88.43  Aligned_cols=98  Identities=18%  Similarity=0.111  Sum_probs=75.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  220 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL-------------------PSFD----PMISETLVEVMNA  220 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchh-------------------hhhh----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999875310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.+++|.+++.++   ..+.+.+|+++.+|.||+|+|.+|..
T Consensus       221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            899999999999998643   36777888899999999999998865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.28  E-value=1.3e-06  Score=89.02  Aligned_cols=99  Identities=15%  Similarity=0.259  Sum_probs=73.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  222 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEIL-------------------PQGD----PETAALLRRALEK  222 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310                   0000    0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeC-C--Cc--EEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTA-T--GE--TISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~-~--g~--~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.+++|.+++.++.  .+.+. +  |+  ++.+|.||+|+|.+|...
T Consensus       223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~  274 (464)
T 2eq6_A          223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE  274 (464)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred             cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence            9999999999999986543  34444 5  65  899999999999988654

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.28  E-value=4.3e-07  Score=90.98  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      .+||+|||||++|+++|++|+++  |.+   |+|||+...
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~~~   72 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEGGL   72 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSCS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCCCC
Confidence            48999999999999999999999  887   999999753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.28  E-value=1.8e-06  Score=83.68  Aligned_cols=99  Identities=11%  Similarity=0.182  Sum_probs=76.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEee----cCcc------------ccc----cCCHHHHHHHHHHHHhCCcEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFP----EAHC------------MAR----LFTPKIASYYEEYYKSKGVKFV  222 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~----~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~i~  222 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++    ...+            .+.    ....++.+.+.+.+++.|++++
T Consensus         9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   88 (333)
T 1vdc_A            9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF   88 (333)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence            5799999999999999999999999999998    2211            111    0124677778888889999999


Q ss_pred             cCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       223 ~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .++ +..++.. ++. ..+.+ +++++.+|.|++|+|.+|...
T Consensus        89 ~~~-v~~i~~~-~~~-~~v~~-~~~~~~~~~vv~A~G~~~~~~  127 (333)
T 1vdc_A           89 TET-VTKVDFS-SKP-FKLFT-DSKAILADAVILAIGAVAKRL  127 (333)
T ss_dssp             CCC-CCEEECS-SSS-EEEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred             EeE-EEEEEEc-CCE-EEEEE-CCcEEEcCEEEECCCCCcCCC
Confidence            987 8888763 332 24555 778899999999999877653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.28  E-value=2.9e-06  Score=86.35  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      .+.+.+.+.+.+  ++++++++|++|+.++++  ..|.+.+|+++.+|.||+|++.
T Consensus       236 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          236 TLVEEIEKQLKL--TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             HHHHHHHHTCCS--EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhcCC--CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence            444444443332  799999999999984443  3588889989999999999874

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.27  E-value=1.3e-06  Score=92.07  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||++|++.|.+   |+|||+.+.
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~~   52 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLFP   52 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            47999999999999999999999987   999999853

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.27  E-value=7.3e-07  Score=88.07  Aligned_cols=99  Identities=22%  Similarity=0.366  Sum_probs=72.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------ccCC-HHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RLFT-PKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------~~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      .+.+++|||+|+.|+.+|..|++.| +|+++++.+....          ...+ .++.....+.+++.||+++.+++++.
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            4789999999999999999999999 9999998864211          0011 11112234566788999999999999


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ++.  +.+  .|. .+++++.+|.+++|||.+|...
T Consensus        86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p  116 (367)
T 1xhc_A           86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP  116 (367)
T ss_dssp             EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred             EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence            875  222  244 5778999999999999888754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.26  E-value=2.4e-06  Score=88.62  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=34.9

Q ss_pred             HH-cCcEEEeCceEEEEECCC--c--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           82 NE-HGIELVLGTRVKSADVRR--K--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        82 ~~-~gv~~~~~~~v~~i~~~~--~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .+ .|++++.+ +|++++.+.  .  .+.+.+|.++.+|.||.|+|.....
T Consensus       186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            45 79999999 699987542  3  4556677789999999999987544

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.26  E-value=1.6e-06  Score=87.05  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=76.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...      .. .+        +       ......+.+.+++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtvv~~~~~~l------~~-~~--------~-------~~~~~~l~~~l~~  197 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLS---VTILEAGDELL------VR-VL--------G-------RRIGAWLRGLLTE  197 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS------HH-HH--------C-------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCccc------hh-hc--------C-------HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999885310      00 00        0       0111334566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.+++  .+.+.+|+++.+|.||+|+|.+|..
T Consensus       198 ~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          198 LGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPAD  243 (410)
T ss_dssp             HTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECC
T ss_pred             CCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecH
Confidence            8999999999999987654  5788899999999999999998864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.26  E-value=1.6e-06  Score=88.38  Aligned_cols=98  Identities=19%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  219 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLL-------------------FQFD----PLLSATLAENMHA  219 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999875310                   0000    0011234566788


Q ss_pred             cCcEEEeCceEEEEECCC--cEEEeCCCc-EEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR--KTLVTATGE-TISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~--~~v~~~~g~-~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.|.+++.++  ..+.+.+|+ ++.+|.||+|+|.+|..
T Consensus       220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence            999999999999987643  456777888 89999999999998865

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.25  E-value=1.4e-06  Score=87.09  Aligned_cols=97  Identities=19%  Similarity=0.352  Sum_probs=73.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc------c-cc-----CCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM------A-RL-----FTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l------~-~~-----~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      ++++|||+|+.|+.+|..|++.|.  +|+++++.+.+.      + ..     ...++.....+.+++.+|+++. ++++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~   80 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV   80 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence            689999999999999999999998  899999876321      1 00     0111222235567788999999 8899


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +++.  +.+  .+.+.+|+++.+|.+++|||.+|..
T Consensus        81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~  112 (404)
T 3fg2_P           81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM  112 (404)
T ss_dssp             EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred             EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence            9976  232  4777899999999999999987664

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.25  E-value=1.5e-06  Score=88.50  Aligned_cols=99  Identities=18%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ........+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  223 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------------------SGFE----KQMAAIIKKRLKK  223 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999875310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeC---CCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTA---TGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~---~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++++.+++.++..  +.+.   +++++.+|.+|+|+|.+|...
T Consensus       224 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~  273 (455)
T 1ebd_A          224 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD  273 (455)
T ss_dssp             TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred             CCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence            99999999999999865433  3333   456799999999999988653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.23  E-value=2.2e-06  Score=86.07  Aligned_cols=99  Identities=21%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+... .              ...+       ......+.+.+++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l-~--------------~~~~-------~~~~~~l~~~l~~  206 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVL-A--------------RVAG-------EALSEFYQAEHRA  206 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-T--------------TTSC-------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchh-h--------------hhcC-------HHHHHHHHHHHHh
Confidence            46899999999999999999998876   99999886311 0              0000       0111334566778


Q ss_pred             cCcEEEeCceEEEEECCCc---EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK---TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~---~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.|.+++.++.   .+.+.+|+++.+|.||+|+|.+|..
T Consensus       207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred             CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence            9999999999999987542   4677889999999999999998864

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.23  E-value=2.3e-06  Score=86.43  Aligned_cols=100  Identities=24%  Similarity=0.374  Sum_probs=75.0

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcccc------c-cC-----CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------R-LF-----TPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l~------~-~~-----~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      ..+++|||+|+.|+.+|..|++.|.  +|+++++.+.+..      . .+     ..++.....+.+++.||+++.++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v   83 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   83 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence            3689999999999999999999997  7999998754210      0 00     0111111235667889999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ..++.. +.   .+.+.+|+++.+|.+++|+|.+|+..
T Consensus        84 ~~i~~~-~~---~v~~~~g~~~~~d~lviAtG~~p~~~  117 (431)
T 1q1r_A           84 TAINRD-RQ---QVILSDGRALDYDRLVLATGGRPRPL  117 (431)
T ss_dssp             EEEETT-TT---EEEETTSCEEECSEEEECCCEEECCC
T ss_pred             EEEECC-CC---EEEECCCCEEECCEEEEcCCCCccCC
Confidence            999752 22   46778888999999999999988764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.22  E-value=4.3e-06  Score=83.88  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=78.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc--------ccc----------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------MAR----------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~--------l~~----------------------------------  200 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+..        .+.                                  
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            47999999999999999999999999999986410        000                                  


Q ss_pred             ----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCC
Q 011700          201 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       201 ----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~  261 (479)
                                      .++ ..+.+.+.+.+++.|++++.+++|++++.++++....+.+.+|+  ++.+|.||.|+|..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~  165 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYG  165 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGG
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCc
Confidence                            001 24556677777788999999999999987555555567778887  79999999999987


Q ss_pred             C
Q 011700          262 P  262 (479)
Q Consensus       262 p  262 (479)
                      +
T Consensus       166 s  166 (421)
T 3nix_A          166 R  166 (421)
T ss_dssp             C
T ss_pred             h
Confidence            6

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.21  E-value=3e-06  Score=88.42  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=33.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||+|||||++|+++|+.|+++|++   |+|+|+.+.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~---V~LlEk~d~   52 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQ---TGLVEMNDF   52 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSST
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEECCCC
Confidence            358999999999999999999999998   999999854

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.21  E-value=5e-06  Score=84.32  Aligned_cols=102  Identities=21%  Similarity=0.213  Sum_probs=76.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCccc----cc---------------------------------c-
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM----AR---------------------------------L-  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~l----~~---------------------------------~-  201 (479)
                      ..+|+|||+|+.|+.+|..|++.|.  +|+++++.+.+.    ..                                 . 
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            5789999999999999999999999  999999874320    00                                 0 


Q ss_pred             -------------C--------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc---E
Q 011700          202 -------------F--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN---R  248 (479)
Q Consensus       202 -------------~--------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~---~  248 (479)
                                   +              ..++.+.+.+..++.++.++++++|++++.. ++. ..|.+.+   |+   +
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~-~~~-~~V~~~~~~~G~~~~~  163 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGS-WVVTYKGTKAGSPISK  163 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTE-EEEEEEESSTTCCEEE
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeC-CCe-EEEEEeecCCCCeeEE
Confidence                         0              1245666777777778889999999999874 332 2355544   66   7


Q ss_pred             EeccEEEEecCC--CCChh
Q 011700          249 LPTDMVVVGIGI--RPNTS  265 (479)
Q Consensus       249 i~~D~Vi~a~G~--~p~~~  265 (479)
                      +.+|.||+|+|.  .|+..
T Consensus       164 ~~~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          164 DIFDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             EEESEEEECCCSSSSBCBC
T ss_pred             EEeCEEEECCCCCCCCCCC
Confidence            999999999998  66543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.21  E-value=3.6e-06  Score=85.08  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=75.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..++++|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll-------------------~~~d----~~~~~~~~~~l~~  200 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKIN-------------------KLMD----ADMNQPILDELDK  200 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCS-------------------TTSC----GGGGHHHHHHHHH
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeecccc-------------------cccc----chhHHHHHHHhhc
Confidence            35899999999999999999999876   99999875310                   0000    1112345667888


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.+++|.+++.  ..+.+.+++++.+|.+++|+|.+|..
T Consensus       201 ~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn~  242 (437)
T 4eqs_A          201 REIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPNS  242 (437)
T ss_dssp             TTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEESC
T ss_pred             cceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecCc
Confidence            9999999999998764  56888899999999999999988864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.21  E-value=7.1e-06  Score=79.00  Aligned_cols=98  Identities=11%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---c--------ccc---cCCHHHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR---LFTPKIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~--------l~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...   +        .+.   ....++.+.+.+.+++.|++++. .++.
T Consensus        17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~   95 (319)
T 3cty_A           17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR   95 (319)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence            5799999999999999999999999999998421   0        111   11256677788888889999998 6788


Q ss_pred             EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          229 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       229 ~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +++.. ++.. .+.+ ++.++.+|.+++|+|..|..
T Consensus        96 ~i~~~-~~~~-~v~~-~~~~~~~~~li~AtG~~~~~  128 (319)
T 3cty_A           96 SIKKT-QGGF-DIET-NDDTYHAKYVIITTGTTHKH  128 (319)
T ss_dssp             EEEEE-TTEE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred             EEEEe-CCEE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence            88763 3322 3555 56789999999999987654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.20  E-value=4.5e-06  Score=87.35  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             EeecCCCccc-ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcC--CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          118 IIATGARALK-LEEFGLSGSDAENVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       118 viAtG~~~~~-~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~--~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ..++.++... +++   |..+..++..+....+...+...+...  ..-.|+|||+|..|+..|..|++.|.+|+++++.
T Consensus        77 ~~c~~ch~~~~~~~---p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~  153 (566)
T 1qo8_A           77 FYCNECHSFDIKPM---PFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA  153 (566)
T ss_dssp             CGGGGTCCCCCCCC---TTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             chhhhhcCCCcCCC---CCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3455665544 333   333333333444433333332333311  1236999999999999999999999999999987


Q ss_pred             Cccccc--------------------------------------------------------------------------
Q 011700          195 AHCMAR--------------------------------------------------------------------------  200 (479)
Q Consensus       195 ~~~l~~--------------------------------------------------------------------------  200 (479)
                      +.+...                                                                          
T Consensus       154 ~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g  233 (566)
T 1qo8_A          154 PFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGG  233 (566)
T ss_dssp             SSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTT
T ss_pred             CCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCC
Confidence            532100                                                                          


Q ss_pred             -----c--------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecCCCCC
Q 011700          201 -----L--------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN  263 (479)
Q Consensus       201 -----~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~  263 (479)
                           .        ....+.+.+.+.+++.||+++++++++++..++++++..+.+.  +|+  ++.+|.||+|+|-...
T Consensus       234 ~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          234 ARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             CSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence                 0        0123445566777888999999999999987432777666664  675  6899999999996554


Q ss_pred             h
Q 011700          264 T  264 (479)
Q Consensus       264 ~  264 (479)
                      .
T Consensus       314 ~  314 (566)
T 1qo8_A          314 N  314 (566)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.19  E-value=4.7e-06  Score=80.17  Aligned_cols=99  Identities=12%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-----------cccc----cCCHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-----------CMAR----LFTPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-----------~l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .+++|||+|+.|+.+|..|++.|.+|+++++...           ..+.    ...+++.+.+.+.+++.|++++.++ +
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v   84 (320)
T 1trb_A            6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I   84 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence            5799999999999999999999999999986410           0111    1125677778888889999999986 8


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ..++.. ++.+ .+ +.+++++.+|.+++|+|.+|...
T Consensus        85 ~~i~~~-~~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~  119 (320)
T 1trb_A           85 NKVDLQ-NRPF-RL-NGDNGEYTCDALIIATGASARYL  119 (320)
T ss_dssp             EEEECS-SSSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred             eEEEec-CCEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence            888763 3332 34 56778999999999999877543

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.19  E-value=3.9e-06  Score=86.45  Aligned_cols=98  Identities=14%  Similarity=0.097  Sum_probs=75.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|+++|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  229 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL-------------------RKFD----ESVINVLENDMKK  229 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccC-------------------cccc----hhhHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310                   0000    0111334567788


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcE-EEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGET-ISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~-~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.+.   ..+.+.+|++ +.+|.||+|+|.+|..
T Consensus       230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred             CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence            999999999999997642   3577778887 9999999999999875

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.19  E-value=2.9e-06  Score=90.02  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||.||++||++|++.|.+   |+|||+.+.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~~~   39 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIPV   39 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence            58999999999999999999999987   999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=3.2e-06  Score=86.60  Aligned_cols=98  Identities=14%  Similarity=0.116  Sum_probs=74.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  238 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVL-------------------RKFD----ECIQNTITDHYVK  238 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCccc-------------------cccC----HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999885310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCC----cEEEeCCC-cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR----KTLVTATG-ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~----~~v~~~~g-~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.+++|.+++.+.    ..+.+.+| +++.+|.||+|+|.+|..
T Consensus       239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            899999999999997642    35777788 789999999999988865

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.18  E-value=3.1e-06  Score=88.99  Aligned_cols=98  Identities=17%  Similarity=0.301  Sum_probs=77.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  240 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIE---VTLVEMANQVM-------------------PPID----YEMAAYVHEHMKN  240 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCccc-------------------ccCC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99998875310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.|.+++.+...+.+.+|+++.+|.||+|+|.+|..
T Consensus       241 ~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~  284 (588)
T 3ics_A          241 HDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPES  284 (588)
T ss_dssp             TTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECC
T ss_pred             cCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCCh
Confidence            99999999999999887678888899999999999999988764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.18  E-value=8.3e-06  Score=81.28  Aligned_cols=101  Identities=17%  Similarity=0.245  Sum_probs=74.8

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----cCCHHHHHH---------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASY---------------------------  209 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~---------------------------  209 (479)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.....     .+.+...+.                           
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653111     012222111                           


Q ss_pred             ----------------HHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          210 ----------------YEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       210 ----------------~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                                      +.+.|.+  .|++++.++++++++.++++ + .+.+.+|+++.+|.||.|.|.....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCHH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-E-EEEECCCCEEECCEEEECCCcchhH
Confidence                            1222222  37899999999999874443 3 5788899999999999999987654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.17  E-value=5.4e-06  Score=86.98  Aligned_cols=35  Identities=29%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||++|++.|.+   |+|+|+.+.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~---V~vlEK~~~   41 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP   41 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence            47999999999999999999999887   999999854

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.16  E-value=3.7e-06  Score=87.63  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+|+++|..|+++|.+   |+|||+.+.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~~~   60 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDG   60 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            47999999999999999999999987   999999865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.16  E-value=4.7e-06  Score=80.99  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC---cc--------ccc----cCCHHHHHHHHHHHHhCCcEEEcCCc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTV  226 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~GV~i~~~~~  226 (479)
                      ..+++|||+|+.|+.+|..|.+.|.+|+++++..   .+        .+.    ...+++.+.+.+.+++.|++++.++ 
T Consensus        14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~-   92 (335)
T 2a87_A           14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED-   92 (335)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence            3579999999999999999999999999998531   00        111    0125677778888888999999987 


Q ss_pred             eEEEEEcCCCcEEEE-EeCCCcEEeccEEEEecCCCCChh
Q 011700          227 LSSFDVDSNGKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       227 v~~i~~~~~g~v~~v-~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+++. ++.  ..+ .+.+++++.+|.+++|+|.+|...
T Consensus        93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~~  129 (335)
T 2a87_A           93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARYL  129 (335)
T ss_dssp             EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred             EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccCC
Confidence            888875 222  235 677888999999999999877543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.16  E-value=1.2e-05  Score=84.22  Aligned_cols=105  Identities=16%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc--------------------------------------cC--
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LF--  202 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~--------------------------------------~~--  202 (479)
                      ..|+|||+|..|+.+|..|++.|.+|+++++.+.+...                                      ..  
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~  206 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP  206 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            57999999999999999999999999999986532110                                      00  


Q ss_pred             -----------------------------------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC
Q 011700          203 -----------------------------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN  235 (479)
Q Consensus       203 -----------------------------------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~  235 (479)
                                                                     ...+.+.+.+.+++.||+++++++++++..+++
T Consensus       207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  286 (571)
T 1y0p_A          207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  286 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence                                                           123455666777888999999999999987443


Q ss_pred             CcEEEEEeC--CCc--EEeccEEEEecCCCC-Chhhh
Q 011700          236 GKVVAVNLR--DGN--RLPTDMVVVGIGIRP-NTSLF  267 (479)
Q Consensus       236 g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p-~~~l~  267 (479)
                      +++..+...  +|+  ++.+|.||+|+|... +.+++
T Consensus       287 g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~  323 (571)
T 1y0p_A          287 GTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERV  323 (571)
T ss_dssp             SCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHH
Confidence            777666654  665  689999999999654 44443

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.16  E-value=3.7e-06  Score=86.85  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=35.7

Q ss_pred             HHHcCcEEEeCceEEEEECC--C--cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           81 YNEHGIELVLGTRVKSADVR--R--KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~--~--~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      +.+.|++++.+ +|+++..+  +  ..|.+.+|+++++|.||.|+|.....
T Consensus       183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            34579999999 89998763  2  24566778889999999999986543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.15  E-value=3.6e-06  Score=86.17  Aligned_cols=99  Identities=21%  Similarity=0.393  Sum_probs=73.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  236 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG-------------------ASMD----GEVAKATQKFLKK  236 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------SSSC----HHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEEC--CCc--EEEeC-----CCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADV--RRK--TLVTA-----TGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~--~~~--~v~~~-----~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.  +++  .+.+.     +++++.+|.||+|+|.+|...
T Consensus       237 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          237 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             CCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence            9999999999999986  443  34443     346799999999999988653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.14  E-value=7.1e-06  Score=78.57  Aligned_cols=99  Identities=13%  Similarity=0.119  Sum_probs=74.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEE-EeecCcc------------ccc----cCCHHHHHHHHHHHHhCCcEEEcC
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTM-VFPEAHC------------MAR----LFTPKIASYYEEYYKSKGVKFVKG  224 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtl-v~~~~~~------------l~~----~~~~~~~~~~~~~l~~~GV~i~~~  224 (479)
                      ..+++|||+|+.|+.+|..|++.|.+|++ +++. .+            .+.    ....++.+.+.+.+++.|++++.+
T Consensus         4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   82 (315)
T 3r9u_A            4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV   82 (315)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence            46899999999999999999999999999 8873 21            111    012577888888999999999988


Q ss_pred             CceEEEEEcCC-CcEEEE-EeCCCcEEeccEEEEecCCCCChh
Q 011700          225 TVLSSFDVDSN-GKVVAV-NLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       225 ~~v~~i~~~~~-g~v~~v-~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                       ++.++ .+++ +.. .+ ...++ ++.+|.+++|+|.+|+..
T Consensus        83 -~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           83 -GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             -CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred             -EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence             78888 5331 322 33 22344 899999999999877654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.14  E-value=4.4e-06  Score=85.85  Aligned_cols=98  Identities=17%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      ..+++|||||+.|+..|..|++.   |.+   |+++++.+...                   +.+.    ......+.+.
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~  244 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLIL-------------------RGFD----ETIREEVTKQ  244 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSC-------------------TTSC----HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHH
Confidence            36899999999999999999998   765   99999875310                   0000    0111334566


Q ss_pred             HHHcCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           81 YNEHGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      +++.||+++.++.|.+++.++   ..+.+.+|+++.+|.||+|+|.+|..
T Consensus       245 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence            788999999999999998653   36777888899999999999998865

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.14  E-value=4.6e-06  Score=85.66  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=75.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR---GVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKW   80 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~---g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (479)
                      ..+++|||||+.|+.+|..|++.   |.+   |+++++.+...                   +.+.    ......+.+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~  240 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMIL-------------------RGFD----SELRKQLTEQ  240 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCcc-------------------cccC----HHHHHHHHHH
Confidence            36899999999999999999998   765   99999885310                   0000    0111334566


Q ss_pred             HHHcCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecCCCccc
Q 011700           81 YNEHGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      +++.||+++.++.|.+++.++   ..+.+.+|+++.+|.||+|+|.+|..
T Consensus       241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence            788999999999999998653   36777788889999999999998865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.13  E-value=5.9e-06  Score=84.86  Aligned_cols=99  Identities=23%  Similarity=0.304  Sum_probs=73.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...      ..         .++       ........+.+++
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l------~~---------~~~-------~~~~~~l~~~l~~  248 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCL------AG---------YYD-------RDLTDLMAKNMEE  248 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT------TT---------TSC-------HHHHHHHHHHHHT
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchh------hh---------HHH-------HHHHHHHHHHHHh
Confidence            46899999999999999999998876   99999885310      00         000       0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.+++  .+.+ +++++.+|.||+|+|.+|..+
T Consensus       249 ~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          249 HGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             TTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred             CCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence            9999999999999987543  3555 677899999999999988653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.13  E-value=4.8e-06  Score=85.15  Aligned_cols=99  Identities=15%  Similarity=0.243  Sum_probs=72.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...   +   .         .++       ........+.+++
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~---~---------~~~-------~~~~~~l~~~l~~  232 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVG---G---V---------GID-------MEISKNFQRILQK  232 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---C---S---------SCC-------HHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccC---C---c---------ccC-------HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310   0   0         000       0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCc---EEEe-----CCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK---TLVT-----ATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~---~v~~-----~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.|.+++.++.   .+.+     .+++++.+|.||+|+|.+|..
T Consensus       233 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~  284 (474)
T 1zmd_A          233 QGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT  284 (474)
T ss_dssp             TTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred             CCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence            9999999999999986542   3332     355789999999999998865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.12  E-value=4.4e-06  Score=84.88  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=73.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccc--cc----cCCH------HHHHHHHHHHHhCCcEEEcCCceE
Q 011700          163 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM--AR----LFTP------KIASYYEEYYKSKGVKFVKGTVLS  228 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l--~~----~~~~------~~~~~~~~~l~~~GV~i~~~~~v~  228 (479)
                      ++++|||+|+.|+.+|..|++.  +.+|+++++++.+-  +.    .+..      ++.....+.+++.|++++.++++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~   82 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV   82 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence            5799999999999999999998  89999999887532  10    0111      111113466788999999999999


Q ss_pred             EEEEcCCCcEEEEE-eCCCcEEeccEEEEecCCCCChh
Q 011700          229 SFDVDSNGKVVAVN-LRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       229 ~i~~~~~g~v~~v~-~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +++. ++.. ..+. ..+++++.+|.+++|+|.+|...
T Consensus        83 ~id~-~~~~-v~v~~~~~~~~~~~d~lviAtG~~p~~p  118 (452)
T 3oc4_A           83 AMDV-ENQL-IAWTRKEEQQWYSYDKLILATGASQFST  118 (452)
T ss_dssp             EEET-TTTE-EEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred             EEEC-CCCE-EEEEecCceEEEEcCEEEECCCcccCCC
Confidence            9986 2332 2333 23456899999999999988754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.12  E-value=1.9e-05  Score=82.54  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=77.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cc-----------------------cc------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------  200 (479)
                      -.|+|||+|..|+++|..+++.|.+|+++++.+. +.                       ..                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            3699999999999999999999999999997631 10                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                                 ..+ ..+.+.+.+.+++ .|++++ +..++.+.. +++.+..|.+.+|.++.+|.||+|+|..+..
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~  183 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLDG  183 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTCC
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCccC
Confidence                       011 1345666777777 699995 568999986 4667778888899899999999999987653

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.12  E-value=5e-06  Score=86.08  Aligned_cols=97  Identities=18%  Similarity=0.233  Sum_probs=74.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+..|..|++.|.+   |+++++.+...                   +.+.    ......+.+.+++.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~~  268 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK-------------------LIKD----NETRAYVLDRMKEQ  268 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT-------------------TCCS----HHHHHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccc-------------------cccc----HHHHHHHHHHHHhC
Confidence            6899999999999999999998876   99999885310                   0000    01113345667889


Q ss_pred             CcEEEeCceEEEEEC--CC----cEEEeCCCc-EEEeceEEeecCCCccc
Q 011700           85 GIELVLGTRVKSADV--RR----KTLVTATGE-TISYKILIIATGARALK  127 (479)
Q Consensus        85 gv~~~~~~~v~~i~~--~~----~~v~~~~g~-~~~~d~lviAtG~~~~~  127 (479)
                      |++++.+++|.+++.  +.    ..+.+.+|+ ++.+|.||+|+|.+|..
T Consensus       269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            999999999999986  33    246667777 89999999999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.12  E-value=1e-05  Score=77.56  Aligned_cols=99  Identities=14%  Similarity=0.189  Sum_probs=74.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc----c---c---------cc----cCCHHHHHHHHHHHHhCCcEEEc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH----C---M---------AR----LFTPKIASYYEEYYKSKGVKFVK  223 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~----~---l---------~~----~~~~~~~~~~~~~l~~~GV~i~~  223 (479)
                      .++|||+|+.|+.+|..++++|.+|+++++.+.    +   +         +.    ...+++.+.+.+.+++.++++..
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~   85 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT   85 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence            599999999999999999999999999987531    0   0         00    01256778888888999999886


Q ss_pred             CCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          224 GTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       224 ~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .. +.......+  ...+.+.++.++.+|.+++|||.+|...
T Consensus        86 ~~-v~~~~~~~~--~~~~~~~~~~~~~~~~liiATG~~~~~~  124 (314)
T 4a5l_A           86 ET-IDHVDFSTQ--PFKLFTEEGKEVLTKSVIIATGATAKRM  124 (314)
T ss_dssp             CC-EEEEECSSS--SEEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred             eE-EEEeecCCC--ceEEEECCCeEEEEeEEEEccccccccc
Confidence            65 555554222  2346678888999999999999877543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.12  E-value=4.6e-06  Score=85.02  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=72.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+..           +        |.+.    ........+.+++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~-----------l--------~~~~----~~~~~~l~~~l~~  224 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRA-----------L--------PNED----ADVSKEIEKQFKK  224 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS-----------S--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCcc-----------c--------cccC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   9999988531           0        0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeC-CC--cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTA-TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~-~g--~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.++.  .+.+. +|  +++.+|.+|+|+|.+|..
T Consensus       225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~  273 (464)
T 2a8x_A          225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV  273 (464)
T ss_dssp             HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred             cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence            8999999999999986543  34443 55  679999999999998864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.12  E-value=2.9e-06  Score=86.98  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  238 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM-------------------QGAD----RDLVKVWQKQNEY  238 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc-------------------cccC----HHHHHHHHHHHHh
Confidence            46899999999999999999998876   99999885310                   0000    0111234566778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCC----CcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTAT----GETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~----g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.++.  .+.+.+    ++++.+|.||+|+|.+|..
T Consensus       239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred             cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence            8999999999999976543  455555    6779999999999998865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.11  E-value=6.9e-06  Score=84.54  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=74.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  235 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVL-------------------PYED----ADAALVLEESFAE  235 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-------------------CCSS----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99999885310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.|.+++.++.  .+.+.+++++.+|.||+|+|.+|..
T Consensus       236 ~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence            9999999999999986543  4555677889999999999998865

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.10  E-value=5.1e-06  Score=84.57  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=76.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCC-----CeEEEEeecCccc-------c--------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCM-------A--------------------------------  199 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g-----~~Vtlv~~~~~~l-------~--------------------------------  199 (479)
                      +|+|||+|+.|+.+|..|++.|     .+|+++++.+.+-       +                                
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~  111 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD  111 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence            7999999999999999999999     9999999876321       0                                


Q ss_pred             ---------cc--CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcE--EEEEeCCCc----EEeccEEEEecCCC
Q 011700          200 ---------RL--FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKV--VAVNLRDGN----RLPTDMVVVGIGIR  261 (479)
Q Consensus       200 ---------~~--~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v--~~v~~~~g~----~i~~D~Vi~a~G~~  261 (479)
                               ..  ...++.+.+....++.+++++++++|++++..+ ++..  ..|.+.+++    ++.+|.||+|+|..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence                     00  013445556666667789999999999998632 1332  256666665    89999999999987


Q ss_pred             CChh
Q 011700          262 PNTS  265 (479)
Q Consensus       262 p~~~  265 (479)
                      |..+
T Consensus       192 p~~p  195 (463)
T 3s5w_A          192 PRIP  195 (463)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            7644

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.10  E-value=6.3e-06  Score=83.62  Aligned_cols=100  Identities=22%  Similarity=0.308  Sum_probs=70.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccc------cccC-----CHHHHHHHHHHH-HhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF-----TPKIASYYEEYY-KSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l------~~~~-----~~~~~~~~~~~l-~~~GV~i~~~~~v  227 (479)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+.      +..+     ..++.....+.+ ++.||+++.++++
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v   82 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV   82 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence            46899999999999999999987  78999999887431      1100     111122222333 6789999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCC-cEEeccEEEEecCCCCChh
Q 011700          228 SSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g-~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ..++.  +.  ..+.+.++ .++.+|.+++|||.+|...
T Consensus        83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p  117 (449)
T 3kd9_A           83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP  117 (449)
T ss_dssp             EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred             EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence            98854  22  34666676 4899999999999887643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.10  E-value=1.2e-05  Score=79.91  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc------ccc------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC------MAR------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~------l~~------------------------------------  200 (479)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+..      ...                                    
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            37999999999999999999999999999987531      000                                    


Q ss_pred             ----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCC
Q 011700          201 ----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       201 ----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~  260 (479)
                                      .++ .++.+.+.+.+.+.|++++.++++++++.++++.+ .+.+ .+|+  ++.+|.||.|.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                            001 33455666677778999999999999986333333 4666 6786  7999999999998


Q ss_pred             CCCh
Q 011700          261 RPNT  264 (479)
Q Consensus       261 ~p~~  264 (479)
                      ....
T Consensus       162 ~S~v  165 (394)
T 1k0i_A          162 HGIS  165 (394)
T ss_dssp             TCST
T ss_pred             CcHH
Confidence            7765

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.10  E-value=6.5e-06  Score=79.12  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|+++|..|++.  |++   |+|+|+.+.
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~~~  101 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVA  101 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecCcc
Confidence            46999999999999999999998  776   999999865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.09  E-value=5.8e-06  Score=85.60  Aligned_cols=98  Identities=13%  Similarity=0.080  Sum_probs=74.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+..|..++++|.+   |+++++....                    |.+.    .+......+.+++
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L--------------------~~~D----~ei~~~l~~~l~~  275 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVL--------------------RGFD----QQCAVKVKLYMEE  275 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSS--------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCe---EEEecccccc--------------------cccc----hhHHHHHHHHHHh
Confidence            46899999999999999999999987   8999765321                    1110    1112345667889


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.+..+......  +.+.++.++.+|.|++|+|-+|+..
T Consensus       276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~  322 (542)
T 4b1b_A          276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID  322 (542)
T ss_dssp             TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred             hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence            99999999998888765544  4557778899999999999888753

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.09  E-value=2.3e-05  Score=81.65  Aligned_cols=101  Identities=24%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc-cc-----------------------cc------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CM-----------------------AR------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~-~l-----------------------~~------------------  200 (479)
                      -.|+|||+|..|+++|..+++.|.+|.++++.+. +-                       ..                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999997631 00                       00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                 ..+ ..+.+.+.+.+++ .|++++ +..|+++.. +++.+..|.+.+|+++.+|.||+|+|..++..
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~  183 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGV  183 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBTCE
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCccCc
Confidence                       001 1345566677777 599995 678999876 56777789999999999999999999876543

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.08  E-value=6.2e-06  Score=84.26  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcc------ccccCC------HHH-------HHHHHHHHHhCCcE
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC------MARLFT------PKI-------ASYYEEYYKSKGVK  220 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~------l~~~~~------~~~-------~~~~~~~l~~~GV~  220 (479)
                      .++++|||+|+.|+.+|..|++.  +.+|+++++.+.+      ++..+.      .++       ........++.|++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~   82 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE   82 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence            36899999999999999999998  8999999998763      111111      111       11222222357999


Q ss_pred             EEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCCCCChh
Q 011700          221 FVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       221 i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~~p~~~  265 (479)
                      ++.++++.+++. ++..+ .+.. .+|+  ++.+|.+++|+|.+|...
T Consensus        83 ~~~~~~V~~id~-~~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p  128 (472)
T 3iwa_A           83 ALVETRAHAIDR-AAHTV-EIENLRTGERRTLKYDKLVLALGSKANRP  128 (472)
T ss_dssp             EECSEEEEEEET-TTTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEECCEEEEEEC-CCCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence            999999999986 33333 3332 3465  799999999999877653

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.08  E-value=7.3e-06  Score=83.61  Aligned_cols=98  Identities=17%  Similarity=0.341  Sum_probs=72.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH-H
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY-N   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   82 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ......+.+.+ +
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  227 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCA-------------------PTLD----EDVTNALVGALAK  227 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCccc-------------------ccCC----HHHHHHHHHHHhh
Confidence            36899999999999999999998876   99999885310                   0000    01113345667 8


Q ss_pred             HcCcEEEeCceEEEEECCCc--EEEeC--CC--cEEEeceEEeecCCCccc
Q 011700           83 EHGIELVLGTRVKSADVRRK--TLVTA--TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~--~v~~~--~g--~~~~~d~lviAtG~~~~~  127 (479)
                      +.|++++.+++|.+++.++.  .+.+.  +|  +++.+|.||+|+|.+|..
T Consensus       228 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          228 NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred             cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence            89999999999999986542  34443  55  679999999999988864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.08  E-value=1.5e-05  Score=78.74  Aligned_cols=56  Identities=18%  Similarity=0.230  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      .+.+.+.+.+++.|++++.+++|++++.+ ++.+ .+.+.+| ++.+|.||+|+|....
T Consensus       165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH
Confidence            45566777888899999999999999873 4445 6777777 8999999999998644

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.08  E-value=5.8e-06  Score=84.65  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=72.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...   +             .++       ......+.+.+++
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~-------------~~~-------~~~~~~l~~~l~~  239 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELGKK---VRMIERNDHIG---T-------------IYD-------GDMAEYIYKEADK  239 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTTCE---EEEECCGGGTT---S-------------SSC-------HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeCCchh---h-------------cCC-------HHHHHHHHHHHHH
Confidence            57899999999999999999998876   99999875310   0             000       1111234566778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.|.+++.+++.  +.+ ++.++.+|.||+|+|.+|..
T Consensus       240 ~Gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~D~vi~a~G~~p~~  284 (480)
T 3cgb_A          240 HHIEILTNENVKAFKGNERVEAVET-DKGTYKADLVLVSVGVKPNT  284 (480)
T ss_dssp             TTCEEECSCCEEEEEESSBEEEEEE-TTEEEECSEEEECSCEEESC
T ss_pred             cCcEEEcCCEEEEEEcCCcEEEEEE-CCCEEEcCEEEECcCCCcCh
Confidence            99999999999999876543  344 45589999999999988764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.07  E-value=2.2e-05  Score=81.66  Aligned_cols=98  Identities=16%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------cc------------cCC----------------HHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------AR------------LFT----------------PKI  206 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------~~------------~~~----------------~~~  206 (479)
                      .+|+|||+|+.|+.+|..|++.|.+|+++++.+.+-        +.            .+.                +++
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            469999999999999999999999999999875320        00            011                345


Q ss_pred             HHHHHHHHHhCC--cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          207 ASYYEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       207 ~~~~~~~l~~~G--V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      .+.+.+..++.+  ++++++++|.+++.++++....|.+.+|+++.+|.||+|+|.
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~  152 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ  152 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence            556666666655  678899999999875544445688889989999999999995

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.07  E-value=7.5e-06  Score=83.15  Aligned_cols=100  Identities=23%  Similarity=0.316  Sum_probs=73.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++.+...      ..         .++       ......+.+.+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l------~~---------~~~-------~~~~~~l~~~l~~  203 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVL------YK---------YFD-------KEFTDILAKDYEA  203 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTT------TT---------TSC-------HHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchh------hh---------hhh-------hhHHHHHHHHHHH
Confidence            46899999999999999999998875   99999875310      00         000       0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCcEE--EeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRKTL--VTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v--~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.+++|.+++.++..+  ...+|+++.+|.||+|+|.+|...
T Consensus       204 ~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          204 HGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             TTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred             CCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence            999999999999998633322  234778899999999999988653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.05  E-value=4.6e-06  Score=85.17  Aligned_cols=98  Identities=15%  Similarity=0.287  Sum_probs=72.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   |.+.    ......+.+.+++
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  230 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV-------------------PTMD----AEIRKQFQRSLEK  230 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc-------------------cccc----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999885310                   0000    0111234566788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeC---CC--cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTA---TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~---~g--~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++++.+++.++.  .+.+.   +|  +++.+|.+|+|+|.+|..
T Consensus       231 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  281 (470)
T 1dxl_A          231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT  281 (470)
T ss_dssp             SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence            9999999999999987653  34443   44  679999999999998865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.04  E-value=2.6e-05  Score=74.74  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---cc--------cc---cCCHHHHHHHHHHHHhCCcEEEcCCceEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM--------AR---LFTPKIASYYEEYYKSKGVKFVKGTVLSS  229 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---~l--------~~---~~~~~~~~~~~~~l~~~GV~i~~~~~v~~  229 (479)
                      .|+|||+|+.|+.+|..|++.|.+|+++++...   ++        +.   ...+++.....+...+.++.+..+.....
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV   87 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence            489999999999999999999999999987531   11        10   11356777777778888888888776655


Q ss_pred             EEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          230 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       230 i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      ... ...   .....+++++.+|.+++|||.+|...
T Consensus        88 ~~~-~~~---~~~~~~~~~~~~d~liiAtGs~~~~~  119 (312)
T 4gcm_A           88 EDK-GEY---KVINFGNKELTAKAVIIATGAEYKKI  119 (312)
T ss_dssp             EEC-SSC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred             eee-ecc---eeeccCCeEEEeceeEEcccCccCcC
Confidence            543 222   34456778999999999999877653

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.04  E-value=2e-05  Score=79.95  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=78.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------c---------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R---------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------~---------------------------  200 (479)
                      -+|+|||+|+.|+.+|..|++.|.+|+++++.+....               .                           
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999998653210               0                           


Q ss_pred             ---------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCCCCh
Q 011700          201 ---------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       201 ---------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~p~~  264 (479)
                               .++ ..+.+.+.+.+++.|++++.+++|++++. +++.+..|.+.   +|+  ++.+|.||.|.|..+..
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                     001 24566677777789999999999999987 45555445553   675  79999999999987654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.03  E-value=1.1e-05  Score=82.75  Aligned_cols=99  Identities=22%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  244 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLIL-------------------RNFD----YDLRQLLNDAMVA  244 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99998875310                   0000    0111234556778


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.|.+++.++.  .+.+.+|+++.+|.||+|+|.+|...
T Consensus       245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~  291 (484)
T 3o0h_A          245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT  291 (484)
T ss_dssp             HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred             CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence            8999999999999986543  56777888999999999999887643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.01  E-value=1.1e-05  Score=84.47  Aligned_cols=98  Identities=18%  Similarity=0.281  Sum_probs=73.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  204 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIK---TTLLELADQVM-------------------TPVD----REMAGFAHQAIRD  204 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCc---EEEEEcCCccc-------------------hhcC----HHHHHHHHHHHHH
Confidence            35899999999999999999998876   99999875310                   0000    0111234556788


Q ss_pred             cCcEEEeCceEEEEEC-------------------CCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADV-------------------RRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~-------------------~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.++.+.+++.                   ...  .+.+.+|+++.+|.||+|+|.+|..
T Consensus       205 ~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~  269 (565)
T 3ntd_A          205 QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPET  269 (565)
T ss_dssp             TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred             CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccch
Confidence            9999999999998875                   222  4566788899999999999988764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.99  E-value=4.7e-05  Score=79.63  Aligned_cols=101  Identities=14%  Similarity=0.299  Sum_probs=77.1

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc------------------------cc------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------------AR------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------------------~~------------------  200 (479)
                      -.|+|||+|..|+++|..+++.|.+|+++++.+..+                        ..                  
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            479999999999999999999999999999763100                        00                  


Q ss_pred             -----------cCC-HHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          201 -----------LFT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       201 -----------~~~-~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                 ..+ ..+.+.+.+.+++ .|++++.+ .+..+.. +++.+..|.+.+|+++.+|.||+|+|..++..
T Consensus       102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~  177 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLNGL  177 (641)
T ss_dssp             SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBTCE
T ss_pred             ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCCcc
Confidence                       011 1445566677777 49999654 7888876 45667778888999999999999999876543

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.98  E-value=5.7e-05  Score=79.13  Aligned_cols=102  Identities=22%  Similarity=0.319  Sum_probs=79.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhC------CCeEEEEeecCccccc------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMAR------------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~------g~~Vtlv~~~~~~l~~------------------------------------  200 (479)
                      -.|+|||+|+.|+-+|..|++.      |.+|+++++.+.+-..                                    
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      9999999976432100                                    


Q ss_pred             --------cC---C--------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC------CC---
Q 011700          201 --------LF---T--------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------DG---  246 (479)
Q Consensus       201 --------~~---~--------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~------~g---  246 (479)
                              .+   +              ..+.+.+.+.+++.||+++.++.++++..++++.+..|.+.      +|   
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~  195 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK  195 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence                    00   0              14556677778888999999999999987556777667765      33   


Q ss_pred             ------cEEeccEEEEecCCCCCh
Q 011700          247 ------NRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       247 ------~~i~~D~Vi~a~G~~p~~  264 (479)
                            .++.+|.||.|.|.....
T Consensus       196 ~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          196 TTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             EEEECCCEEECSEEEECCCTTCHH
T ss_pred             cccCCceEEECCEEEEeeCCCchH
Confidence                  689999999999988754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.97  E-value=1.3e-05  Score=82.30  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  227 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVA-------------------NLQD----EEMKRYAEKTFNE  227 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCT-------------------TCCC----HHHHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc-------------------ccCC----HHHHHHHHHHHhh
Confidence            36899999999999999999998876   99999885310                   0000    0111233445556


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeC--CC--cEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTA--TG--ETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~--~g--~~~~~d~lviAtG~~~~~~  128 (479)
                      . |+++.++.+.+++.++.  .+.+.  +|  +++.+|.||+|+|.+|...
T Consensus       228 ~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~  277 (492)
T 3ic9_A          228 E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD  277 (492)
T ss_dssp             T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred             C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence            6 99999999999876543  34443  56  6799999999999988653

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.96  E-value=1e-05  Score=85.71  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR------GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~------g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||++|++.      |.+   |+|||+.+.
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEecCC
Confidence            48999999999999999999997      877   999999754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.96  E-value=4e-06  Score=85.14  Aligned_cols=89  Identities=18%  Similarity=0.192  Sum_probs=69.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------ccc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MAR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD  233 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------l~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  233 (479)
                      +++|+|||+|+.|+.+|..|++.|.+|+++++.+.+       ++. .++.++.+...+.+++.||++++++.+..    
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~----  197 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR----  197 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT----
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc----
Confidence            578999999999999999999999999999998764       222 13667777888889999999999986520    


Q ss_pred             CCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          234 SNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       234 ~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                            .+.+.++ .+.+|.|++|+|..
T Consensus       198 ------~v~~~~~-~~~~d~vvlAtG~~  218 (456)
T 2vdc_G          198 ------DASLPEL-RRKHVAVLVATGVY  218 (456)
T ss_dssp             ------TBCHHHH-HSSCSEEEECCCCC
T ss_pred             ------EEEhhHh-HhhCCEEEEecCCC
Confidence                  1222222 35799999999986

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.95  E-value=1.5e-05  Score=81.24  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+.+|..|++.|.+   |+++++.+...   + .             +       ......+.+.+++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~-~-------------~-------~~~~~~l~~~l~~  228 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFF---R-E-------------D-------PAIGEAVTAAFRA  228 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T-S-------------C-------HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccC---C-C-------------C-------HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310   0 0             0       0111334566788


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCCCcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      .|++++.+++|.+++.++..  +.+. +.++.+|.||+|+|.+|..
T Consensus       229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~  273 (467)
T 1zk7_A          229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT  273 (467)
T ss_dssp             TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred             CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence            99999999999999765543  4444 5689999999999998764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.95  E-value=3.9e-05  Score=80.32  Aligned_cols=101  Identities=19%  Similarity=0.242  Sum_probs=78.8

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc------------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------------------------------------  199 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------  199 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+....                                          
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            46899999999999999999999999999998621000                                          


Q ss_pred             ----------c----------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-CC--cEEeccEEE
Q 011700          200 ----------R----------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTDMVV  255 (479)
Q Consensus       200 ----------~----------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D~Vi  255 (479)
                                .          .++ ..+.+.+.+.+++.|++++.+++|++++.+ ++....|.+. +|  .++.+|.||
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence                      0          011 345667777888899999999999999863 4555567776 66  579999999


Q ss_pred             EecCCCCC
Q 011700          256 VGIGIRPN  263 (479)
Q Consensus       256 ~a~G~~p~  263 (479)
                      .|+|....
T Consensus       182 ~AdG~~S~  189 (591)
T 3i3l_A          182 DAGGSGGP  189 (591)
T ss_dssp             ECCGGGCH
T ss_pred             ECCCCcch
Confidence            99998664

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.95  E-value=6e-05  Score=74.91  Aligned_cols=100  Identities=17%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------cCCHHHH------------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPKIA------------------------------  207 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------~~~~~~~------------------------------  207 (479)
                      +|+|||+|+.|+-+|..|++.|.+|+|+++.+.+...      .+.+...                              
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~   82 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN   82 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence            6999999999999999999999999999976433211      0011100                              


Q ss_pred             -----------------------------HHHHHHHH-hCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700          208 -----------------------------SYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  257 (479)
Q Consensus       208 -----------------------------~~~~~~l~-~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a  257 (479)
                                                   ..+.+.|. ..+.++++++++++++..+++.+ .+.+.||+++++|+||-|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVgA  161 (412)
T 4hb9_A           83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVGA  161 (412)
T ss_dssp             TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEEC
T ss_pred             CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEEC
Confidence                                         11222222 23446788999999987566655 688999999999999999


Q ss_pred             cCCCCCh
Q 011700          258 IGIRPNT  264 (479)
Q Consensus       258 ~G~~p~~  264 (479)
                      -|.....
T Consensus       162 DG~~S~v  168 (412)
T 4hb9_A          162 DGSNSKV  168 (412)
T ss_dssp             CCTTCHH
T ss_pred             CCCCcch
Confidence            9987654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.94  E-value=1.8e-05  Score=80.62  Aligned_cols=98  Identities=21%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..+++.|.+   |+++++.+...                   +.+.    ......+.+.+++
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  223 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEIL-------------------SRFD----QDMRRGLHAAMEE  223 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            46899999999999999999998876   99999875310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCC-c--EEE-eCCCcEEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRR-K--TLV-TATGETISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~-~--~v~-~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      .|++++.++.|.+++.++ .  .+. +.+|+ +.+|.||+|+|.+|...
T Consensus       224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~  271 (463)
T 4dna_A          224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN  271 (463)
T ss_dssp             TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred             CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence            999999999999998652 2  566 77777 99999999999887643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.93  E-value=4.2e-05  Score=74.44  Aligned_cols=94  Identities=18%  Similarity=0.274  Sum_probs=67.7

Q ss_pred             CEEEECCChHHHHHHHHHhh---CCCeEEEEeecCccccc-------------------c---CCH---HHH--------
Q 011700          164 NAVVIGGGYIGMECAASLVI---NKINVTMVFPEAHCMAR-------------------L---FTP---KIA--------  207 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~~~l~~-------------------~---~~~---~~~--------  207 (479)
                      +|+|||+|..|+-+|..|++   .|.+|+++++.+.+-.+                   .   .+.   .+.        
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   89999999976422100                   0   000   111        


Q ss_pred             ------------------------------HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEe
Q 011700          208 ------------------------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG  257 (479)
Q Consensus       208 ------------------------------~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a  257 (479)
                                                    ..+....++.|++++++++|++|+.++++ + .|.+.+|+++.+|.||+|
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A  160 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVLT  160 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS-E-EEEESSSCCEEESEEEEC
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEEC
Confidence                                          11122223348999999999999984433 3 578888888999999999


Q ss_pred             cC
Q 011700          258 IG  259 (479)
Q Consensus       258 ~G  259 (479)
                      ++
T Consensus       161 ~p  162 (342)
T 3qj4_A          161 MP  162 (342)
T ss_dssp             SC
T ss_pred             CC
Confidence            85

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.93  E-value=1.3e-05  Score=85.37  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK-----RGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~-----~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+|+++|..|++     .|.+   |+|||+.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCCCC
Confidence            5799999999999999999999     8987   999998764

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.93  E-value=6e-05  Score=78.80  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      ..+|+|||+|..|+..|..|++.|.+|+++++.+.+...                                         
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            358999999999999999999999999999976532100                                         


Q ss_pred             --------------------------------------c--------CCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC
Q 011700          201 --------------------------------------L--------FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS  234 (479)
Q Consensus       201 --------------------------------------~--------~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~  234 (479)
                                                            .        ....+.+.+.+.+++.||+++++++++++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                  0        012344556677788899999999999998733


Q ss_pred             CCcEEEEEeC--CCc--EEeccEEEEecCCCCC-hhhh
Q 011700          235 NGKVVAVNLR--DGN--RLPTDMVVVGIGIRPN-TSLF  267 (479)
Q Consensus       235 ~g~v~~v~~~--~g~--~i~~D~Vi~a~G~~p~-~~l~  267 (479)
                      ++++..|...  +|+  ++.+|.||+|+|..+. .+++
T Consensus       286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~  323 (572)
T 1d4d_A          286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERV  323 (572)
T ss_dssp             -CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHH
T ss_pred             CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHH
Confidence            2777666664  564  6899999999997664 4444

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.92  E-value=8.9e-06  Score=83.63  Aligned_cols=100  Identities=18%  Similarity=0.333  Sum_probs=68.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc---------cCCH-HHHHHHHHHH--HhCCcEEEcCCceEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------LFTP-KIASYYEEYY--KSKGVKFVKGTVLSSF  230 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------~~~~-~~~~~~~~~l--~~~GV~i~~~~~v~~i  230 (479)
                      ++|||||+|+.|+.+|..|.+.+.+||++++++.+.-.         .+++ ++...+.+.+  ++.+++++.+ ++++|
T Consensus        43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~I  121 (502)
T 4g6h_A           43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATSI  121 (502)
T ss_dssp             CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEEE
T ss_pred             CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEEE
Confidence            57999999999999999999999999999998754211         1111 1111223322  3457888865 57888


Q ss_pred             EEcCCCcEEEEEe------------------CCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNL------------------RDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~------------------~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                      +.+ ...+ .+..                  .++.++++|.+|+|+|.+|+..
T Consensus       122 D~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~  172 (502)
T 4g6h_A          122 NPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF  172 (502)
T ss_dssp             EGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred             Ehh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence            762 2222 2221                  3467899999999999988764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.92  E-value=1.7e-05  Score=81.35  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=72.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVP-PGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ..+++|||||+.|+.+|..|++.+.+ ..+|+++++.+.. ..              ..++.       .......+.++
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~--------------~~l~~-------~~~~~~~~~l~  237 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MG--------------KILPE-------YLSNWTMEKVR  237 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TT--------------TTSCH-------HHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-cc--------------ccCCH-------HHHHHHHHHHH
Confidence            36899999999999999998874211 1248999876421 00              00110       01123455677


Q ss_pred             HcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecCCCccc
Q 011700           83 EHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      +.||+++.++.|.+++.++.  .+.+.+|+++.+|.||+|+|.+|..
T Consensus       238 ~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~  284 (493)
T 1m6i_A          238 REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV  284 (493)
T ss_dssp             TTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred             hcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence            88999999999999875433  4667788899999999999998764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.92  E-value=5.6e-05  Score=75.25  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=71.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----c--C-C---HHH-------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----L--F-T---PKI-------------------------  206 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----~--~-~---~~~-------------------------  206 (479)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+    .  + .   .++                         
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~  105 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK  105 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence            468999999999999999999999999999987543110    0  0 0   000                         


Q ss_pred             ---------------------HHHHHHHHHh--CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          207 ---------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       207 ---------------------~~~~~~~l~~--~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                                           ...+.+.|.+  .+++++++++|++++.+++ .+ .+++.+|+++.+|.||.|.|....
T Consensus       106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKK-KW-TLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSS-SE-EEEETTSCCEEESEEEECSCTTCS
T ss_pred             CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCC-EE-EEEECCCcEEecCEEEECCCcchh
Confidence                                 0111222221  1357888999999987443 33 578889989999999999998765


Q ss_pred             h
Q 011700          264 T  264 (479)
Q Consensus       264 ~  264 (479)
                      .
T Consensus       184 v  184 (398)
T 2xdo_A          184 V  184 (398)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.92  E-value=1.3e-05  Score=82.06  Aligned_cols=98  Identities=18%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++....+                    .+.    ........+.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~l~~  239 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLR--------------------GFD----QQMAELVAASMEE  239 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCc--------------------ccC----HHHHHHHHHHHHh
Confidence            35899999999999999999998876   99998753110                    000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCc-----EEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGE-----TISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~-----~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.+++.+.   ..+.+.++.     ++.+|.||+|+|.+|...
T Consensus       240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence            999999999999887532   235554432     789999999999887643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.91  E-value=2.6e-05  Score=79.64  Aligned_cols=98  Identities=19%  Similarity=0.355  Sum_probs=72.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||+|+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~~----~~~~~~l~~~l~~  233 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL-------------------PAVD----EQVAKEAQKILTK  233 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC-------------------cccC----HHHHHHHHHHHHh
Confidence            36899999999999999999998876   99999875310                   0000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCC---cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATG---ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g---~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.++.  .+.+.++   +++.+|.+|+|+|.+|..
T Consensus       234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~  282 (476)
T 3lad_A          234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT  282 (476)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred             CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence            9999999999999886543  3445443   679999999999988765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.91  E-value=6.4e-05  Score=77.52  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc--------cccc----------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR----------------------------------  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--------~l~~----------------------------------  200 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+++.+.        +.+.                                  
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            4799999999999999999999999999998741        0000                                  


Q ss_pred             -------------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE--eCCCc--EEeccEEEE
Q 011700          201 -------------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN--LRDGN--RLPTDMVVV  256 (479)
Q Consensus       201 -------------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~--~~~g~--~i~~D~Vi~  256 (479)
                                         .++ ..+.+.+.+.+++.|++++.+++|++++. +++.+..+.  ..+|+  ++.+|.||.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence                               011 24556677777889999999999999987 455554444  45674  799999999


Q ss_pred             ecCCCCCh
Q 011700          257 GIGIRPNT  264 (479)
Q Consensus       257 a~G~~p~~  264 (479)
                      |+|.....
T Consensus       167 AdG~~S~v  174 (512)
T 3e1t_A          167 ASGNRTRV  174 (512)
T ss_dssp             CCCTTCSS
T ss_pred             CCCcchHH
Confidence            99987644

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.90  E-value=2.3e-05  Score=80.38  Aligned_cols=98  Identities=18%  Similarity=0.314  Sum_probs=72.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~l~~~l~~  251 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTIL-------------------GGMD----GEVAKQLQRMLTK  251 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------SSSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecccccc-------------------ccCC----HHHHHHHHHHHHh
Confidence            46899999999999999999998876   99998875310                   0000    0111334566778


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEeCC---C--cEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVTAT---G--ETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~~~---g--~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++++.+++.++..  +.+.+   |  +++.+|.||+|+|.+|..
T Consensus       252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  302 (491)
T 3urh_A          252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST  302 (491)
T ss_dssp             TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred             CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence            89999999999988765443  34432   4  579999999999988765

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.89  E-value=5.3e-05  Score=75.57  Aligned_cols=100  Identities=19%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------------  200 (479)
                      .-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.                                         
T Consensus        23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g  102 (407)
T 3rp8_A           23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG  102 (407)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence            468999999999999999999999999999987532100                                         


Q ss_pred             ----cC-----------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          201 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       201 ----~~-----------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                          .+                 ...+.+.+.+.+++  ++++.+++|++++.++ +. ..+.+.+|+++.+|.||.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDA-DG-VTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCC
T ss_pred             CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecC-Cc-EEEEEcCCCEEeeCEEEECCC
Confidence                00                 02233445555544  8899999999998743 33 358889999999999999999


Q ss_pred             CCCChh
Q 011700          260 IRPNTS  265 (479)
Q Consensus       260 ~~p~~~  265 (479)
                      ......
T Consensus       179 ~~S~vr  184 (407)
T 3rp8_A          179 SHSALR  184 (407)
T ss_dssp             TTCSSH
T ss_pred             cChHHH
Confidence            876654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.87  E-value=6.6e-05  Score=73.73  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +.+.+.+.+++.|++++.+++|++++.+++ .+ .+.+.+| ++.+|.||+|+|...
T Consensus       151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~-~v~~~~g-~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDD-GV-TIETADG-EYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEECSS-SE-EEEESSC-EEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEEcCC-EE-EEEECCC-eEEcCEEEEcCCccH
Confidence            444566677788999999999999987433 33 5677777 599999999999643

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.87  E-value=0.00013  Score=70.01  Aligned_cols=165  Identities=16%  Similarity=0.181  Sum_probs=100.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcccccc-------------------------------------C
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL-------------------------------------F  202 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~-------------------------------------~  202 (479)
                      .-+++|||+|+.|+.+|..|++.  |.+|+++++.+.+-...                                     .
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~  144 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH  144 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence            34899999999999999999998  99999999864431000                                     1


Q ss_pred             CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcC--C-C--cEEEEEeC--------------CCcEEec-----------
Q 011700          203 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDS--N-G--KVVAVNLR--------------DGNRLPT-----------  251 (479)
Q Consensus       203 ~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~--~-g--~v~~v~~~--------------~g~~i~~-----------  251 (479)
                      ..++.+.+.+.+.+ .||+++.++.+.++..++  + +  ++..+...              ++.++.+           
T Consensus       145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~  224 (326)
T 2gjc_A          145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL  224 (326)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred             hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence            23445556666666 499999999999998743  3 4  67776542              3357999           


Q ss_pred             ----cEEEEecCCCCChh-hhhcccc-c-ccC------cE--------EEcCccc-CCCCCeEEEeeeccccccccCcee
Q 011700          252 ----DMVVVGIGIRPNTS-LFEGQLT-L-EKG------GI--------KVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETR  309 (479)
Q Consensus       252 ----D~Vi~a~G~~p~~~-l~~~~~~-~-~~g------~i--------~Vd~~l~-t~~~~IyA~GD~~~~~~~~~g~~~  309 (479)
                          |.||.|+|...... ++...+. . ..+      ..        .|+..-. +-+|++|++|-......   |.++
T Consensus       225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~r  301 (326)
T 2gjc_A          225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELD---GLNR  301 (326)
T ss_dssp             STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHH---TCCB
T ss_pred             cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhc---CCCC
Confidence                99999999775442 2221100 0 000      11        1121122 15899999998875321   1111


Q ss_pred             ecccHHHHHHHHHHHHHHHc
Q 011700          310 RLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       310 ~~~~~~~A~~~g~~aa~~i~  329 (479)
                      -=+....-...|+.||+.|+
T Consensus       302 ~g~~fg~m~~sg~~~a~~~~  321 (326)
T 2gjc_A          302 MGPTFGAMALSGVHAAEQIL  321 (326)
T ss_dssp             CCSCCHHHHHHHHHHHHHHH
T ss_pred             CChhhhhhhhhhHHHHHHHH
Confidence            11222223456777777665

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.87  E-value=2.3e-05  Score=80.09  Aligned_cols=98  Identities=20%  Similarity=0.127  Sum_probs=71.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-------------------~~~d----~~~~~~~~~~l~~  240 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL-------------------RSFD----SMISTNCTEELEN  240 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCccc-------------------cccC----HHHHHHHHHHHHH
Confidence            36899999999999999999998876   99998875310                   0000    0111234566788


Q ss_pred             cCcEEEeCceEEEEECCC-c---EEEeCC-------CcEEEeceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADVRR-K---TLVTAT-------GETISYKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~-~---~v~~~~-------g~~~~~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+.+++.+. .   .+.+.+       ++++.+|.||+|+|.+|..
T Consensus       241 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~  295 (478)
T 3dk9_A          241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT  295 (478)
T ss_dssp             TTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence            999999999999987542 2   344543       2578999999999988765

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.86  E-value=4.9e-05  Score=79.36  Aligned_cols=100  Identities=19%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------------------------------ccc-----
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------------------------------MAR-----  200 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------------------------------l~~-----  200 (479)
                      -.|+|||+|+.|+-+|..|++.|.+|+++++.+..                                     +..     
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            47999999999999999999999999999975321                                     000     


Q ss_pred             --------------cC-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe--CCC-cEEeccEEEEecCCCC
Q 011700          201 --------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDG-NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       201 --------------~~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g-~~i~~D~Vi~a~G~~p  262 (479)
                                    .+ ...+.+.+.+.+++.|++++.+++|++++.++++.  .+.+  .+| +++.+|.||.|.|...
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v--~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAV--EVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCE--EEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeE--EEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence                          01 13456677777888899999999999998754443  3555  778 7899999999999876


Q ss_pred             Ch
Q 011700          263 NT  264 (479)
Q Consensus       263 ~~  264 (479)
                      ..
T Consensus       208 ~v  209 (570)
T 3fmw_A          208 TV  209 (570)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.86  E-value=2.7e-05  Score=79.85  Aligned_cols=98  Identities=15%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|++.|.+   |+++++....+                    .+.    ........+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~l~~~l~~  237 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLR--------------------GFD----QQMSSLVTEHMES  237 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCcccc--------------------cCC----HHHHHHHHHHHHH
Confidence            35799999999999999999999876   99998763210                    000    0111334566788


Q ss_pred             cCcEEEeCceEEEEECC-C--cEEEeCC---Cc--EEEeceEEeecCCCcccc
Q 011700           84 HGIELVLGTRVKSADVR-R--KTLVTAT---GE--TISYKILIIATGARALKL  128 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~-~--~~v~~~~---g~--~~~~d~lviAtG~~~~~~  128 (479)
                      .||+++.++.+.++... +  ..+.+.+   ++  ++.+|.||+|+|.+|...
T Consensus       238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~  290 (488)
T 3dgz_A          238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR  290 (488)
T ss_dssp             TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred             CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence            99999999888888652 2  2344433   44  478999999999887653

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.85  E-value=0.00012  Score=78.14  Aligned_cols=54  Identities=15%  Similarity=0.184  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      .+.+.+.+++.|++++++++|++++.+ ++.+ .|.+.+|.++.+|.||+|+|...
T Consensus       420 ~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~v-~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          420 TRNVLELAQQQGLQIYYQYQLQNFSRK-DDCW-LLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCGGGG
T ss_pred             HHHHHHHHHhCCCEEEeCCeeeEEEEe-CCeE-EEEECCCCEEECCEEEECCCcch
Confidence            344556667789999999999999874 4443 68888888899999999999753

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.82  E-value=8.7e-05  Score=76.95  Aligned_cols=101  Identities=21%  Similarity=0.207  Sum_probs=76.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------------------------------  198 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------------------------------  198 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            479999999999999999999999999999864210                                            


Q ss_pred             -------c----c-----------------cCC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc--EEEEEeCCC-
Q 011700          199 -------A----R-----------------LFT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK--VVAVNLRDG-  246 (479)
Q Consensus       199 -------~----~-----------------~~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~--v~~v~~~~g-  246 (479)
                             .    .                 .++ ..+.+.+.+.+++.|+++++++++++++.++++.  -..+.+.++ 
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~  165 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD  165 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence                   0    0                 001 2455667777888899999999999998754411  234556565 


Q ss_pred             --cEEeccEEEEecCCCCC
Q 011700          247 --NRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       247 --~~i~~D~Vi~a~G~~p~  263 (479)
                        .++.+|.||.|.|....
T Consensus       166 ~~~~i~a~~vV~AdG~~S~  184 (535)
T 3ihg_A          166 GEYDLRAGYLVGADGNRSL  184 (535)
T ss_dssp             EEEEEEEEEEEECCCTTCH
T ss_pred             CeEEEEeCEEEECCCCcch
Confidence              68999999999998764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.79  E-value=1.7e-05  Score=77.92  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=33.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |++++||+|||||++|+++|++|+++|.+   |+|+|+..
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEeccC
Confidence            34578999999999999999999999876   99999985

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.78  E-value=0.00022  Score=73.98  Aligned_cols=56  Identities=16%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +.+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus       169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            44556667789999999 899998755666667888888899999999999986654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.74  E-value=0.00022  Score=68.95  Aligned_cols=166  Identities=14%  Similarity=0.107  Sum_probs=101.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccc-------------------------------------cC
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR-------------------------------------LF  202 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~-------------------------------------~~  202 (479)
                      .-.|+|||+|+.|+.+|..|++.  |.+|+++++.+.+-..                                     ..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~  158 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH  158 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence            35799999999999999999997  9999999987532100                                     00


Q ss_pred             CHHHHHHHHHHHHh-CCcEEEcCCceEEEEEcCC----------------C--cEEEEEeC--------------CCcEE
Q 011700          203 TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSN----------------G--KVVAVNLR--------------DGNRL  249 (479)
Q Consensus       203 ~~~~~~~~~~~l~~-~GV~i~~~~~v~~i~~~~~----------------g--~v~~v~~~--------------~g~~i  249 (479)
                      ..++.+.+.+.+++ .|++++.++.+.++..+++                +  ++..+...              +..++
T Consensus       159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i  238 (344)
T 3jsk_A          159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI  238 (344)
T ss_dssp             HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence            23444566666666 5999999999999876432                3  56566542              22479


Q ss_pred             eccEEEEecCCCCChh------hhhccccc-ccCc--EEEcC--c---ccC--CCCCeEEEeeeccccccccCceeeccc
Q 011700          250 PTDMVVVGIGIRPNTS------LFEGQLTL-EKGG--IKVTG--R---LQS--SNSSVYAVGDVAAFPLKLLGETRRLEH  313 (479)
Q Consensus       250 ~~D~Vi~a~G~~p~~~------l~~~~~~~-~~g~--i~Vd~--~---l~t--~~~~IyA~GD~~~~~~~~~g~~~~~~~  313 (479)
                      .++.||.|+|......      +...++.. -.|.  ..++.  .   ..|  -+|++|++|=.+.-.   .|.++.=+.
T Consensus       239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~---~g~~rmgp~  315 (344)
T 3jsk_A          239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEI---DGANRMGPT  315 (344)
T ss_dssp             ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHH---HTCEECCSC
T ss_pred             EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhh---cCCCCCCcc
Confidence            9999999999876521      11112211 0111  11110  0   012  379999999776532   122222122


Q ss_pred             HHHHHHHHHHHHHHHcC
Q 011700          314 VDSARKSAKHAVAAIME  330 (479)
Q Consensus       314 ~~~A~~~g~~aa~~i~~  330 (479)
                      ..-=...|+.||+.|+.
T Consensus       316 fg~m~~sg~~~a~~~~~  332 (344)
T 3jsk_A          316 FGAMALSGVKAAHEAIR  332 (344)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cceeeecCHHHHHHHHH
Confidence            22234567777776653

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.74  E-value=2.5e-05  Score=79.32  Aligned_cols=60  Identities=12%  Similarity=0.139  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcC-CCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ...+.+.+.+.+++.|++++++++|++|..+. ++++..|.+ +|+++.||.||+++|..|.
T Consensus       241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            35788888888999999999999999998732 566666776 5788999999999997653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.74  E-value=0.0001  Score=75.07  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------cCCH-H-------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------LFTP-K-------  205 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------~~~~-~-------  205 (479)
                      .++|||+|+.|+.+|..|++.|.+|+++++.+.+-..                              .++. .       
T Consensus         6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (466)
T 3l8k_A            6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY   85 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence            6999999999999999999999999999966543110                              0110 0       


Q ss_pred             ---HH--HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcE--EeccEEEEecCCCCChh
Q 011700          206 ---IA--SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       206 ---~~--~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~Vi~a~G~~p~~~  265 (479)
                         +.  ..+.+.+++.||+++.+ .+..++.   . ...+...+|++  +.+|.+++|+|.+|...
T Consensus        86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~---~-~~~V~~~~g~~~~~~~d~lviAtG~~p~~p  147 (466)
T 3l8k_A           86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKDP---T-HVIVKTDEGKEIEAETRYMIIASGAETAKL  147 (466)
T ss_dssp             HHHHHHHHHHHHHTTCTTEEEESE-EEEEEET---T-EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred             heeccccchHHHHHHhCCCEEEEe-EEEEecC---C-eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence               11  33445556789999987 4666642   2 24577788888  99999999999877653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.71  E-value=2e-05  Score=81.18  Aligned_cols=53  Identities=15%  Similarity=0.213  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      ..+.+.+.+.+++.|++++++++|++|.. +++   .+.+.+|+++.+|.||.++..
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~-~~~---~v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNA-NNK---TVTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEET-TTT---EEEETTSCEEEEEEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEc-cCC---EEEEcCCCEEECCEEEECCCH
Confidence            45677788888889999999999999986 333   356889999999999998763

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.71  E-value=0.00022  Score=73.42  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-c--EEecc-EEEEecCCCC-Chhhhh
Q 011700          205 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-N--RLPTD-MVVVGIGIRP-NTSLFE  268 (479)
Q Consensus       205 ~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-~--~i~~D-~Vi~a~G~~p-~~~l~~  268 (479)
                      .+.+.+.+.+++.||+++++++++++..++++++..|...++ +  ++.+| .||+|+|--. |.++++
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~  271 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIE  271 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHH
Confidence            455666677778899999999999999854688877776543 2  58996 9999999655 444443

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.71  E-value=6.8e-05  Score=77.45  Aligned_cols=97  Identities=15%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+..|..|+++|.+   |+++++....+                    .+.    ........+.+++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~--------------------~~d----~~~~~~~~~~l~~~  263 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLR--------------------GFD----QDMANKIGEHMEEH  263 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHHT
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCe---EEEEecccccc--------------------cCC----HHHHHHHHHHHHHC
Confidence            5799999999999999999999876   99998752110                    000    01113345667889


Q ss_pred             CcEEEeCceEEEEECCC----c--EEE--eCCC---cEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRR----K--TLV--TATG---ETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~----~--~v~--~~~g---~~~~~d~lviAtG~~~~~~  128 (479)
                      ||+++.++.+..+....    .  .+.  ..++   .++.+|.|++|+|.+|...
T Consensus       264 GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~  318 (519)
T 3qfa_A          264 GIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR  318 (519)
T ss_dssp             TCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred             CCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence            99999997766664321    2  232  2344   2578999999999887643

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.69  E-value=4.2e-05  Score=78.46  Aligned_cols=100  Identities=17%  Similarity=0.174  Sum_probs=71.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------c--C---CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------L--F---TPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------~--~---~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .+++|||+|+.|+.+|..|++. .+|+++++.+.+-..       .  +   ..++.+.+.+.+ +.+++++.++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 999999987654110       0  1   123333334444 669999999999888


Q ss_pred             EEcCCCcEEEEEeCCCc--EEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~  265 (479)
                      ... +..+......+++  ++.+|.+++|+|..|...
T Consensus       187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence            763 3333222224454  689999999999877643

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.68  E-value=0.00026  Score=72.62  Aligned_cols=101  Identities=20%  Similarity=0.317  Sum_probs=77.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------c-------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R-------------------  200 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~-------------------  200 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                      .                   
T Consensus        12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   91 (499)
T 2qa2_A           12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF   91 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence            45799999999999999999999999999997532100                      0                   


Q ss_pred             -----cC-------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc---EEeccEEEEecCCCCCh
Q 011700          201 -----LF-------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       201 -----~~-------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~Vi~a~G~~p~~  264 (479)
                           ..       ...+.+.+.+.+++.|++++.++++++++.++++ + .+.+.+++   ++.+|.||.|.|.....
T Consensus        92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~~~g~~~~~a~~vVgADG~~S~V  168 (499)
T 2qa2_A           92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH-V-VVEVEGPDGPRSLTTRYVVGCDGGRSTV  168 (499)
T ss_dssp             GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC-E-EEEEECSSCEEEEEEEEEEECCCTTCHH
T ss_pred             ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE-E-EEEEEcCCCcEEEEeCEEEEccCcccHH
Confidence                 00       1345666777788889999999999999885444 3 46666664   79999999999987643

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.67  E-value=3.5e-05  Score=76.87  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=33.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   41 (479)
                      |++++||+|||||++|++||..|++. |++   |+|+|+++.
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~~~   42 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERRPH   42 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence            44578999999999999999999998 876   999999865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.65  E-value=0.0004  Score=71.24  Aligned_cols=101  Identities=21%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------cc------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------RL------------------  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------~~------------------  201 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                      ..                  
T Consensus        11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~   90 (500)
T 2qa1_A           11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDF   90 (500)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceeccc
Confidence            46799999999999999999999999999997632100                      00                  


Q ss_pred             ------------C-CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc---EEeccEEEEecCCCCCh
Q 011700          202 ------------F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN---RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       202 ------------~-~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~---~i~~D~Vi~a~G~~p~~  264 (479)
                                  + -..+.+.+.+.+++.|++++.++++++++.+++ .+ .+.+.+++   ++.+|.||.|.|.....
T Consensus        91 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S~V  167 (500)
T 2qa1_A           91 GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRSSV  167 (500)
T ss_dssp             GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTCHH
T ss_pred             ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcchHH
Confidence                        0 024556677777888999999999999987444 33 46666664   79999999999987643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.64  E-value=0.00014  Score=72.51  Aligned_cols=101  Identities=18%  Similarity=0.200  Sum_probs=74.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCe-EEEEeecCcccccc---------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMARL---------------------------------------  201 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~-Vtlv~~~~~~l~~~---------------------------------------  201 (479)
                      ..+|+|||+|+.|+-+|..|++.|.+ |+++++.+.+.+..                                       
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g   83 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   83 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence            35799999999999999999999999 99999865421000                                       


Q ss_pred             -------------C--------CHHHHHHHHHHHHh-CC-cEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccE
Q 011700          202 -------------F--------TPKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDM  253 (479)
Q Consensus       202 -------------~--------~~~~~~~~~~~l~~-~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~  253 (479)
                                   +        ..++.+.+.+.+++ .| ++++.++++++++. +++ + .+.+.+   |  +++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad~  160 (410)
T 3c96_A           84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG-R-VLIGARDGHGKPQALGADV  160 (410)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEESE
T ss_pred             CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc-c-EEEEecCCCCCceEEecCE
Confidence                         0        01344556666655 35 68999999999987 454 3 355544   6  5799999


Q ss_pred             EEEecCCCCChh
Q 011700          254 VVVGIGIRPNTS  265 (479)
Q Consensus       254 Vi~a~G~~p~~~  265 (479)
                      ||.|.|......
T Consensus       161 vV~AdG~~S~vR  172 (410)
T 3c96_A          161 LVGADGIHSAVR  172 (410)
T ss_dssp             EEECCCTTCHHH
T ss_pred             EEECCCccchhH
Confidence            999999877653

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.64  E-value=4.3e-05  Score=76.62  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      ++++||+|||||++||+||..|++.| .+   |+|+|+++.
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~---v~v~E~~~~   41 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHD---YTILERTDH   41 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCc---EEEEECCCC
Confidence            35789999999999999999999998 66   999999865

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.63  E-value=1.6e-05  Score=80.79  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=69.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccc--------ccc-CCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--------ARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +++++|||+|+.|+.+|..|.+.+  .+|+++++.+.+.        +.. ...++...+.+.+++.||+++.++.+.  
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~--   83 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG--   83 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT--
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe--
Confidence            678999999999999999999988  9999999987654        210 123566677788889999999987652  


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                         .     .+.+.+ .++.+|.||+|||..|
T Consensus        84 ---~-----~V~~~~-~~~~~d~lVlAtGs~~  106 (460)
T 1cjc_A           84 ---R-----DVTVQE-LQDAYHAVVLSYGAED  106 (460)
T ss_dssp             ---T-----TBCHHH-HHHHSSEEEECCCCCE
T ss_pred             ---e-----EEEecc-ceEEcCEEEEecCcCC
Confidence               1     122333 3478999999999885

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.62  E-value=0.00013  Score=76.77  Aligned_cols=97  Identities=11%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|+++|.+   |+++++....+                    .+.    ........+.+++
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~--------------------~~d----~~~~~~~~~~l~~  338 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRSILLR--------------------GFD----QQMAEKVGDYMEN  338 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSST--------------------TSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCcCcC--------------------cCC----HHHHHHHHHHHHh
Confidence            35799999999999999999999876   99998762100                    000    0011233456778


Q ss_pred             cCcEEEeCceEEEEEC------CC---cE--EE--eCCCcEEE--eceEEeecCCCccc
Q 011700           84 HGIELVLGTRVKSADV------RR---KT--LV--TATGETIS--YKILIIATGARALK  127 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~------~~---~~--v~--~~~g~~~~--~d~lviAtG~~~~~  127 (479)
                      .||+++.++.+..+..      +.   ..  +.  ..+|+++.  +|.||+|+|.+|..
T Consensus       339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~  397 (598)
T 2x8g_A          339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL  397 (598)
T ss_dssp             TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred             CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence            8999999987776632      11   22  22  34666554  99999999998864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.60  E-value=8.5e-05  Score=79.49  Aligned_cols=97  Identities=12%  Similarity=0.073  Sum_probs=71.6

Q ss_pred             CeEEEEC--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            5 FVYVIVG--GGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         5 ~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      .+++|||  +|+.|+.+|..|++.|.+   |+++++.+...       .....       +        .....+.+.++
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~-------~~~~~-------~--------~~~~~l~~~l~  578 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVS-------SWTNN-------T--------FEVNRIQRRLI  578 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTT-------GGGGG-------G--------TCHHHHHHHHH
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccc-------ccccc-------c--------hhHHHHHHHHH
Confidence            5799999  999999999999998876   99998875311       00000       0        00123456678


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEe---CCCcEEEeceEEeecCCCcc
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVT---ATGETISYKILIIATGARAL  126 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~---~~g~~~~~d~lviAtG~~~~  126 (479)
                      +.||+++.+++|.+++.++..+..   .+++++.+|.||+|+|.+|.
T Consensus       579 ~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          579 ENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred             HCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence            899999999999999877655553   24568999999999998875

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.59  E-value=4e-05  Score=78.16  Aligned_cols=55  Identities=22%  Similarity=0.365  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      ..+.+.+.+.+++.|++++++++|++|+.++++ ...|.+ ++.++.+|.||++++.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA  288 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence            357778888899999999999999999874333 235655 5568999999999874

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.59  E-value=9.9e-05  Score=73.66  Aligned_cols=54  Identities=15%  Similarity=0.191  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceE---------EEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLS---------SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~---------~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +.+.+.+.+++.|++++.+++|+         +++. +++.+ .+.+.++ ++.+|.||+|+|...
T Consensus       174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~-~~~~v-~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTV-TNTHQ-IVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEe-eCCeE-EEEECCc-EEECCEEEECCCccH
Confidence            45566777788999999999998         7765 23444 5666666 899999999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.58  E-value=2.9e-05  Score=86.75  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=71.6

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccc-------cc-cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      +++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.       +. .++.+..+...+.+++.||+++.++.+..   
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~---  263 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE---  263 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence            4689999999999999999999999 799999876532       11 13556666677888999999999986531   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCC-CCCh
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT  264 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-~p~~  264 (479)
                         .   .+.+.+++++.+|.|++|||. +|..
T Consensus       264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~  290 (1025)
T 1gte_A          264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT  290 (1025)
T ss_dssp             ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred             ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence               1   133444556789999999998 4654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.57  E-value=4.4e-05  Score=76.90  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +||+||||||+|+++|..|+++|++   |+|||+.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCCC
Confidence            7999999999999999999999987   99999986

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.57  E-value=0.00033  Score=76.58  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +.+.+.+.+++.|++++.+++|++++. +++.+..|.+.+| ++.+|.||+|+|...
T Consensus       153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          153 AVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  207 (830)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence            344556677788999999999999987 4566666777777 799999999999764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.55  E-value=0.0002  Score=79.47  Aligned_cols=100  Identities=13%  Similarity=0.119  Sum_probs=71.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc-------C----CHHHHHHHHHHHHhC-CcEEEcCCceEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF  230 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~----~~~~~~~~~~~l~~~-GV~i~~~~~v~~i  230 (479)
                      .+++|||+|+.|+.+|..+++.|.+|+++++.+.+-...       +    ..++...+.+.+.+. +|+++.++.+.++
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i  208 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS  208 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence            579999999999999999999999999999876532110       1    234445555666664 9999999988888


Q ss_pred             EEcCCCcEEEEEe---------------CCCcEEeccEEEEecCCCCCh
Q 011700          231 DVDSNGKVVAVNL---------------RDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       231 ~~~~~g~v~~v~~---------------~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      ..  ++.+..+..               .++.++.+|.+|+|||.+|..
T Consensus       209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~  255 (965)
T 2gag_A          209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP  255 (965)
T ss_dssp             ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred             ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence            63  333222221               112368999999999987654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.55  E-value=0.00067  Score=67.21  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=38.8

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      .+.+.+++.|++++.+++|++++.+ ++.+ .+.+.++ ++.+|.||+|+|...
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCC-EEEcCEEEEcCCcCh
Confidence            4455566789999999999999874 3333 4666555 799999999999753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.52  E-value=0.00018  Score=76.80  Aligned_cols=47  Identities=15%  Similarity=0.280  Sum_probs=37.7

Q ss_pred             HhHHHHcCcEEEeCceEEEEECCCcEEEe-CCC--cEEEeceEEeecCCCcc
Q 011700           78 PKWYNEHGIELVLGTRVKSADVRRKTLVT-ATG--ETISYKILIIATGARAL  126 (479)
Q Consensus        78 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~-~~g--~~~~~d~lviAtG~~~~  126 (479)
                      .+.+++.||+++.++.+.+++.+.  +.+ .+|  +++.+|.||+|+|.+|.
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~~~~--v~~~~~G~~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKIDDDG--LHVVINGETQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTE--EEEEETTEEEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCEEEeCcEEEEEeCCe--EEEecCCeEEEEeCCEEEECCCcccc
Confidence            456778999999999999998643  333 566  57999999999998874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.50  E-value=0.00048  Score=71.17  Aligned_cols=56  Identities=11%  Similarity=0.207  Sum_probs=44.2

Q ss_pred             HHHHHHHHh-CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          208 SYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       208 ~~~~~~l~~-~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      +.+.+.+++ .|++++.+ +|++++.++++.+..+.+.+|+++.+|.||.|+|.....
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            344555666 89999999 599998755666667888888789999999999987654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.50  E-value=3.1e-05  Score=78.56  Aligned_cols=89  Identities=18%  Similarity=0.170  Sum_probs=67.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhh-C------CCeEEEEeecCcccc--------c-cCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          162 GGNAVVIGGGYIGMECAASLVI-N------KINVTMVFPEAHCMA--------R-LFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~-~------g~~Vtlv~~~~~~l~--------~-~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      +++++|||+|+.|+.+|..|.+ .      +.+|+++++.+.+..        . ....++...+.+.+++.||+++.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v   82 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   82 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence            5689999999999999999999 7      999999999876432        1 1124566777788888999999885


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      .+      + .   .+.+.++ ++.+|.||+|+|..
T Consensus        83 ~v------~-~---~v~~~~~-~~~~d~lViAtG~~  107 (456)
T 1lqt_A           83 VV------G-E---HVQPGEL-SERYDAVIYAVGAQ  107 (456)
T ss_dssp             CB------T-T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred             EE------C-C---EEEECCC-eEeCCEEEEeeCCC
Confidence            43      1 1   1334444 57899999999996

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.50  E-value=6.6e-05  Score=75.99  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++||+|||||++||+||..|++.|++   |+|+|+++.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~   39 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEARDR   39 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence            468999999999999999999999887   999999864

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.49  E-value=0.00064  Score=69.90  Aligned_cols=57  Identities=25%  Similarity=0.377  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          207 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       207 ~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .+.+.+.+++.|++++.+ +|++++.++++.+..|.+.+|+++.+|.||.|.|.....
T Consensus       176 ~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          176 ARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             HHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            344555666789999999 899998755676778888899899999999999986543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.48  E-value=9.4e-05  Score=72.72  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=32.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC-CC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE-PV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~-~~   41 (479)
                      +.+||+|||||++||+||..|.+.|++   |+|+|++ +.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~   79 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANR   79 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccc
Confidence            468999999999999999999999876   9999998 54

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.47  E-value=8.7e-05  Score=75.94  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++||+|||||++||+||..|++.|.+   |+|+|+.+.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~~~   45 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEARTR   45 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence            468999999999999999999999876   999999875

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.45  E-value=0.00011  Score=72.95  Aligned_cols=36  Identities=31%  Similarity=0.557  Sum_probs=32.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|++|||||++|+++|..|++.|.+   |+|+|+.+.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~~~   63 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRRPH   63 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCc---eEEEeccCC
Confidence            358999999999999999999998887   999999865

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.45  E-value=8e-05  Score=76.86  Aligned_cols=36  Identities=19%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      +++||+|||||++||+||..|++.| .+   |+|+|+.+.
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~---V~VlEa~~r   43 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQD---CLVLEARDR   43 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCS---EEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCC---EEEEeCCCC
Confidence            3579999999999999999999998 76   999999875

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.44  E-value=8.3e-05  Score=76.39  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |++.+||+|||||++||+||..|++.|++   |+|+|+.+.
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~   47 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGK   47 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSS
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeCCC
Confidence            44568999999999999999999999876   999999975

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.43  E-value=0.00081  Score=68.99  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPN  263 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~  263 (479)
                      +...+.+.+++.|++++.+++|++++.+ + .+..+.+   .+|+  ++.+|.||.|+|....
T Consensus       151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          151 LVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4445666777889999999999999873 3 4556666   3565  7999999999997643

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.39  E-value=0.00064  Score=69.22  Aligned_cols=99  Identities=18%  Similarity=0.283  Sum_probs=71.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc-------------cccc-----------------------------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------MARL-----------------------------  201 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~-------------l~~~-----------------------------  201 (479)
                      .|+|||+|..|+-+|..|++.|.+|+++++...-             +...                             
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            3899999999999999999999999999876100             0000                             


Q ss_pred             --------------C----------------------CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC-
Q 011700          202 --------------F----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-  244 (479)
Q Consensus       202 --------------~----------------------~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~-  244 (479)
                                    +                      ..++.+.+.+.+++.||+++.++.+ ++.. +++++..+... 
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~  158 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence                          0                      0133445556667789999999999 9876 35666556553 


Q ss_pred             CCcEEeccEEEEecCCCCCh
Q 011700          245 DGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       245 ~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      ++.++.+|.||+|+|..+..
T Consensus       159 ~~g~~~a~~VVlAtGg~~~~  178 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSYL  178 (472)
T ss_dssp             TEEECCCSEEEECCCCCGGG
T ss_pred             CCCeEEeeeEEECCCCCccc
Confidence            23357899999999976643

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.38  E-value=0.00011  Score=74.76  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG--VPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|+++|.+|++.|  .+   |+|+|+++.
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~---v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLN---ITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSE---EEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCC---EEEEECCCC
Confidence            589999999999999999999988  54   999999764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.36  E-value=0.00017  Score=72.72  Aligned_cols=59  Identities=15%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ..++.+.+.+.+++.|++++++++|++|.. +++++..+. .+|+++.||.||+++|..+.
T Consensus       233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence            457788888888899999999999999987 456665555 47889999999999998763

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.35  E-value=0.00017  Score=70.44  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +||+|||||+||+.||..|+++|.+   |+|+|+.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCc---EEEEeccC
Confidence            7999999999999999999999988   99999886

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.35  E-value=0.00015  Score=73.39  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                      ..++.+.+.+.+++.|++++++++|++|..++++++..|.+.+|+++.||.||.+++..
T Consensus       255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            35788889999999999999999999998755778889999999999999999999987

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.35  E-value=0.00012  Score=72.38  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=31.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      +||+|||||++|+++|..|++.  |.+   |+|+|+.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~~~   36 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKNDE   36 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECCCC
Confidence            4899999999999999999998  876   999999865

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.32  E-value=0.00011  Score=71.66  Aligned_cols=36  Identities=22%  Similarity=0.295  Sum_probs=30.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGV---PPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~---~~~~V~lie~~~   40 (479)
                      +||+|||||++|+++|++|+++|.   +..+|+|+|++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            399999999999999999999871   112399999985

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.30  E-value=0.00092  Score=69.59  Aligned_cols=54  Identities=22%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCCCC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRP  262 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~~p  262 (479)
                      ..+.+.+++.|++++++++|+++.. +++++..+.+.+   |  .++.+|.||.|+|...
T Consensus       174 ~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          174 LEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            3445566778999999999999987 466666676654   3  4789999999999653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.26  E-value=0.00019  Score=70.99  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++|++|||||++|+++|..|++.|++   |+|+|+++.
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~   37 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDH   37 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence            348999999999999999999998876   999999865

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.25  E-value=0.0028  Score=66.30  Aligned_cols=51  Identities=12%  Similarity=0.104  Sum_probs=39.2

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~  260 (479)
                      +.+.+++.||+++.++.+.++..++++++..+..   .+|+  ++.++.||+|+|-
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            4455566799999999999998743577766664   4565  6899999999995

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.24  E-value=0.00021  Score=72.73  Aligned_cols=35  Identities=20%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||++|++||..|++.|++   |+|+|+++.
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~---v~v~E~~~~   50 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTD---AVLLESSAR   50 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCC
Confidence            57999999999999999999999887   999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.23  E-value=0.00023  Score=72.87  Aligned_cols=55  Identities=24%  Similarity=0.294  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          204 PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       204 ~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      ..+.+.+.+.+++.| ++++++++|++|+..+ +.+ .|.+.+|+++.+|.||+|+|.
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~  310 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNER-DAA-RVTARDGREFVAKRVVCTIPL  310 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECS-SSE-EEEETTCCEEEEEEEEECCCG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcC-CEE-EEEECCCCEEEcCEEEECCCH
Confidence            567788888888888 9999999999998743 333 577888888999999999985

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.22  E-value=0.00027  Score=72.22  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=32.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      +.+|++|||||++|+++|..|++.| .+   |+|+|+.+.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~~~   44 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDT   44 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCCCC
Confidence            3589999999999999999999987 44   999999864

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.21  E-value=0.00022  Score=70.09  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +|++|||||++|+++|..|++.|.+   |+|+|+++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~   35 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNH   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence            7999999999999999999998887   999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.17  E-value=0.00028  Score=72.33  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+||+|||||++|++||..|+++|.+   |+|+|+.+.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~~~   67 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASER   67 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCC
Confidence            358999999999999999999999886   999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.15  E-value=0.00047  Score=74.15  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=69.1

Q ss_pred             cCeEEEEC--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH
Q 011700            4 AFVYVIVG--GGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY   81 (479)
Q Consensus         4 ~~dvvIIG--gG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (479)
                      ..+|+|||  ||..|+.+|..|++.|.+   |+++++.+ .. .     ...+        +.        ......+.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vtlv~~~~-l~-~-----~~~~--------~~--------~~~~~~~~l  581 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVH-LA-N-----YMHF--------TL--------EYPNMMRRL  581 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSC-TT-H-----HHHH--------TT--------CHHHHHHHH
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCE---EEEEeccc-cc-c-----cccc--------cc--------cHHHHHHHH
Confidence            35899999  999999999999998875   99998875 11 0     0000        00        002234567


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEEe--CCC-cE------------------EEeceEEeecCCCccc
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLVT--ATG-ET------------------ISYKILIIATGARALK  127 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~~--~~g-~~------------------~~~d~lviAtG~~~~~  127 (479)
                      ++.||+++.++.+.+++.+...+..  .++ ++                  +.+|.||+|+|.+|..
T Consensus       582 ~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~  648 (729)
T 1o94_A          582 HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC  648 (729)
T ss_dssp             HHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred             HhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence            7899999999999999865433332  222 22                  8999999999988753

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.14  E-value=0.002  Score=67.50  Aligned_cols=97  Identities=12%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcccc------------------------------c-cCC------
Q 011700          163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA------------------------------R-LFT------  203 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~------------------------------~-~~~------  203 (479)
                      -.|+|||+|..|+-+|..|++.|  .+|+++++.+....                              . ..+      
T Consensus         6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~   85 (602)
T 1kf6_A            6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY   85 (602)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            36999999999999999999999  99999987532100                              0 000      


Q ss_pred             ------------------------------------------------HHHHHHHHHHHHhCC-cEEEcCCceEEEEEcC
Q 011700          204 ------------------------------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDS  234 (479)
Q Consensus       204 ------------------------------------------------~~~~~~~~~~l~~~G-V~i~~~~~v~~i~~~~  234 (479)
                                                                      ..+...+.+.+++.| |+++.++.+.++.. +
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~  164 (602)
T 1kf6_A           86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D  164 (602)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred             HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence                                                            123344555566678 99999999999987 4


Q ss_pred             CCcEEEEEe---CCCc--EEeccEEEEecCC
Q 011700          235 NGKVVAVNL---RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       235 ~g~v~~v~~---~~g~--~i~~D~Vi~a~G~  260 (479)
                      ++++..+..   .+|+  ++.++.||+|+|.
T Consensus       165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg  195 (602)
T 1kf6_A          165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (602)
T ss_dssp             TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence            566655543   5676  6899999999995

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.12  E-value=0.0019  Score=68.37  Aligned_cols=102  Identities=22%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             CCEEEECCChHHHHHHHHHhh-CCCeEEEEeecCccc--------------------------------------c----
Q 011700          163 GNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCM--------------------------------------A----  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~l--------------------------------------~----  199 (479)
                      -.|+|||+|+.|+-+|..|++ .|.+|+++++.+...                                      .    
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~  112 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG  112 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence            369999999999999999999 999999998753210                                      0    


Q ss_pred             --c---------------------cCC-HHHHHHHHHHHHhCCc--EEEcCCceEEEEEcCC--CcEEEEEeC------C
Q 011700          200 --R---------------------LFT-PKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN--GKVVAVNLR------D  245 (479)
Q Consensus       200 --~---------------------~~~-~~~~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~--g~v~~v~~~------~  245 (479)
                        .                     .++ ..+.+.+.+.+++.|+  +++.++++++++.+++  +....+.+.      +
T Consensus       113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~  192 (639)
T 2dkh_A          113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA  192 (639)
T ss_dssp             STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred             CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence              0                     011 2455677778888877  9999999999987542  222345443      4


Q ss_pred             C--cEEeccEEEEecCCCCCh
Q 011700          246 G--NRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       246 g--~~i~~D~Vi~a~G~~p~~  264 (479)
                      |  +++.+|.||.|.|.....
T Consensus       193 G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          193 GQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             TCEEEEEEEEEEECCCTTCHH
T ss_pred             CCeEEEEeCEEEECCCcchHH
Confidence            5  579999999999987654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.10  E-value=0.00026  Score=69.94  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcc----------------------c-cc------------------
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC----------------------M-AR------------------  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~----------------------l-~~------------------  200 (479)
                      +|+|||+|+.|+.+|..|++.  |.+|+++++.+.+                      . ..                  
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   81 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN   81 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence            689999999999999999998  9999999986543                      0 00                  


Q ss_pred             -------------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          201 -------------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       201 -------------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                                   ....++.+.+.+.+++.|++++++++|++++.  .           +++.+|.||.|.|..+.
T Consensus        82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGGG
T ss_pred             eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCch
Confidence                         00145667777888888999999998887743  1           13679999999997654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.09  E-value=0.00039  Score=72.54  Aligned_cols=58  Identities=14%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC---CCc--EEeccEEEEecCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~Vi~a~G~~  261 (479)
                      +..+...+.+.+++.|++++.+++|++++. +++.+..|.+.   +++  ++.+|.||+|+|.-
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w  249 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW  249 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence            455666677778899999999999999987 35566666653   343  79999999999954

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.03  E-value=0.00042  Score=73.37  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFT---K-RGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~---~-~g~~~~~V~lie~~~~   41 (479)
                      ++||||||||+||++||++|+   + .|.+   |+|||+.+.
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~~~   60 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV   60 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCcCC
Confidence            479999999999999999999   5 7877   999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.95  E-value=0.0039  Score=64.97  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .-.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4689999999999999999999999999999764

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.93  E-value=0.0007  Score=68.87  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhC--------CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          205 KIASYYEEYYKSK--------GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       205 ~~~~~~~~~l~~~--------GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      .+.+.+.+.+.+.        |.++++++.|++|+.. ++.+ .|.+.+|+++.+|.||++++.
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGV-TVKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCE-EEEETTSCEEEESEEEECSCH
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcE-EEEECCCCEEEcCEEEEecCH
Confidence            4455555555544        6789999999999874 3444 488899999999999999873

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.93  E-value=0.0053  Score=63.63  Aligned_cols=97  Identities=20%  Similarity=0.307  Sum_probs=69.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc-------------------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------------------  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------------------------------  199 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..                                           
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~  106 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV  106 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence            3699999999999999999999999999997632100                                           


Q ss_pred             -c-----c--------------------CC-HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--c
Q 011700          200 -R-----L--------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--N  247 (479)
Q Consensus       200 -~-----~--------------------~~-~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~  247 (479)
                       .     .                    ++ ..+.+.+.+.+++.   +++++++++++.++++ + .+.+.+   |  +
T Consensus       107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~-v-~v~~~~~~~G~~~  181 (549)
T 2r0c_A          107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH-V-RATITDLRTGATR  181 (549)
T ss_dssp             TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC-E-EEEEEETTTCCEE
T ss_pred             CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE-E-EEEEEECCCCCEE
Confidence             0     0                    00 13444555666555   8889999999875444 3 344443   6  4


Q ss_pred             EEeccEEEEecCCCCCh
Q 011700          248 RLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       248 ~i~~D~Vi~a~G~~p~~  264 (479)
                      ++.+|.||.|.|.....
T Consensus       182 ~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          182 AVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEECCCTTCHH
T ss_pred             EEEeCEEEECCCCCcHH
Confidence            79999999999987654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.85  E-value=0.0028  Score=65.59  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      -.|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus         9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~   40 (540)
T 1chu_A            9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP   40 (540)
T ss_dssp             CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred             CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence            469999999999999999999 99999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.80  E-value=0.0078  Score=63.17  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=37.6

Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~  261 (479)
                      .+.+++.||+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|+|--
T Consensus       162 ~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  216 (621)
T 2h88_A          162 YGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGGY  216 (621)
T ss_dssp             HHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence            3344567899999999999986 4677766655   4565  68999999999953

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.78  E-value=0.001  Score=69.07  Aligned_cols=58  Identities=16%  Similarity=0.331  Sum_probs=42.6

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EE---eccEEEEecCCCCChhhh
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RL---PTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i---~~D~Vi~a~G~~p~~~l~  267 (479)
                      .+....++.++++++++.|++|.. +++++..|++.+   |+  ++   .++.||+|+|.-....++
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL  266 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL  266 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence            444444456999999999999987 456788888865   53  34   789999999976544443

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.75  E-value=0.00055  Score=70.87  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=31.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+||||+|+||+.+|.+|++ +.+   |+|+|+.+.
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~---VlvLEaG~~   59 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYK---VLVLERGSL   59 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSC---EEEECSSBC
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence            5899999999999999999999 876   999999964

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.68  E-value=0.004  Score=62.96  Aligned_cols=100  Identities=15%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             CCeEEecCHHHHHHHHHHHhc--CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHh
Q 011700          139 ENVCYLRDLADANRLVNVMKS--CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS  216 (479)
Q Consensus       139 ~~v~~~~~~~~~~~l~~~l~~--~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~  216 (479)
                      +.++......+..++.+.+..  .+.++++|+|||.+|..+|..|.+ ..+|+++++         +++-.+.+.+.|. 
T Consensus       210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~-  278 (461)
T 4g65_A          210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE-  278 (461)
T ss_dssp             CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT-
T ss_pred             CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC-
Confidence            345555555566666665543  246899999999999999999865 588999875         4444555555442 


Q ss_pred             CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCC
Q 011700          217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR  261 (479)
Q Consensus       217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~  261 (479)
                       +..++.+          |+.-..+ +.+-..-++|.++.+|+..
T Consensus       279 -~~~Vi~G----------D~td~~~-L~ee~i~~~D~~ia~T~~D  311 (461)
T 4g65_A          279 -NTIVFCG----------DAADQEL-LTEENIDQVDVFIALTNED  311 (461)
T ss_dssp             -TSEEEES----------CTTCHHH-HHHTTGGGCSEEEECCSCH
T ss_pred             -CceEEec----------cccchhh-HhhcCchhhcEEEEcccCc
Confidence             2333322          2100000 1111134689999999865

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.66  E-value=0.0011  Score=71.51  Aligned_cols=41  Identities=20%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             CCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          217 KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       217 ~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      .|+++++++.|++|+.++++ + .|.+.+|+++.+|.||+|++
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~-v-~V~~~~G~~i~Ad~VIvA~P  582 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDE-V-QVTTTDGTGYSAQKVLVTVP  582 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSS-E-EEEETTCCEEEESEEEECCC
T ss_pred             hCCcEEcCCeeEEEEEcCCE-E-EEEECCCcEEEcCEEEECCC
Confidence            47899999999999874443 3 58888998999999999984

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.59  E-value=0.0012  Score=67.97  Aligned_cols=52  Identities=13%  Similarity=0.287  Sum_probs=37.7

Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC---cEEeccEEEEecCCCCChhhh
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                      ...+++++.++.+.++.. ++++++.+...+.   .++.++.||+|.|.--...++
T Consensus       222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL  276 (526)
T 3t37_A          222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL  276 (526)
T ss_dssp             TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence            356899999999999987 4566666665432   357789999999965444433

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.57  E-value=0.0016  Score=69.14  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||+|++|++||..|++.|++   |+|+|+.+.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~~~  141 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDR  141 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            57999999999999999999999986   999999864

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.56  E-value=0.0014  Score=68.26  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=31.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.||+||||||.||+.+|.+|++.+.  .+|+|||+.+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~--~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPN--VTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTT--SCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCC--CcEEEEecCCC
Confidence            45999999999999999999998762  23999999865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.52  E-value=0.021  Score=60.38  Aligned_cols=50  Identities=12%  Similarity=0.093  Sum_probs=37.5

Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCC
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIR  261 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~  261 (479)
                      .+.+++.||+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|+|--
T Consensus       165 ~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          165 ANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            3444566899999999999986 4677666654   4565  48999999999953

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.48  E-value=0.0022  Score=69.76  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+||+|||+|++||+||..|+++|++   |+|+|+.+.
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~~~  312 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDR  312 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCc
Confidence            57999999999999999999999987   999999864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.46  E-value=0.0024  Score=65.54  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=33.0

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..++|++|||+|++|+.+|.+|++.+.+   |+|+|+.+.
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence            3468999999999999999999998776   999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.39  E-value=0.024  Score=61.00  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=31.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .+|+|||+|..|+-.|..|.+.|.+|+++++.+++
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            57999999999999999999999999999986543

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=96.36  E-value=0.016  Score=61.42  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=29.3

Q ss_pred             CEEEECCChHHHHHHHHHhh-----CCCeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVI-----NKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~-----~g~~Vtlv~~~  194 (479)
                      .|+|||+|+.|+-+|..|++     .|.+|+++++.
T Consensus        10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A           10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            69999999999999999999     99999999975

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=96.35  E-value=0.0051  Score=62.90  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=29.1

Q ss_pred             CEEEECCChHHHHHHHHHhh-CCCeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  195 (479)
                      .|+|||+|..|+-+|..|++ .|.+|+|+++++
T Consensus        12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~   44 (513)
T 4gde_A           12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE   44 (513)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSS
T ss_pred             CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            59999999999999999987 599999999773

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.31  E-value=0.0024  Score=66.45  Aligned_cols=59  Identities=14%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcC---CCcEEEEEeC--CCc--EEecc-EEEEecCCCCChhhh
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDS---NGKVVAVNLR--DGN--RLPTD-MVVVGIGIRPNTSLF  267 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~---~g~v~~v~~~--~g~--~i~~D-~Vi~a~G~~p~~~l~  267 (479)
                      ++...+++.++++++++.|++|..++   +++++.|++.  +|+  ++.+. -||+|.|.--...++
T Consensus       232 yL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL  298 (583)
T 3qvp_A          232 WLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTIL  298 (583)
T ss_dssp             HTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             HHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHH
Confidence            34444557899999999999998743   5678888875  564  46776 699999966444433

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.26  E-value=0.0032  Score=64.59  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=32.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .++|++|||+|++|+.+|..|++.|.+   |+|+|+.+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~   39 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL   39 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence            358999999999999999999998877   999999864

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.05  E-value=0.0025  Score=67.52  Aligned_cols=34  Identities=26%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC--------CCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG--------VPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g--------~~~~~V~lie~~~   40 (479)
                      .++|+|||||++||+||..|.+.|        ++   |+|+|+++
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEeccC
Confidence            368999999999999999999987        54   99999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.03  E-value=0.0054  Score=56.21  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=31.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999987654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.02  E-value=0.0049  Score=64.39  Aligned_cols=55  Identities=13%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             HHHhCCcEEEcCCceEEEEEcCC---CcEEEEEeC--CCc--EEec-cEEEEecCCCCChhhh
Q 011700          213 YYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNLR--DGN--RLPT-DMVVVGIGIRPNTSLF  267 (479)
Q Consensus       213 ~l~~~GV~i~~~~~v~~i~~~~~---g~v~~v~~~--~g~--~i~~-D~Vi~a~G~~p~~~l~  267 (479)
                      ..++.++++++++.|++|..+++   +++..|+..  +|+  ++.+ +.||+|+|.-....++
T Consensus       240 ~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL  302 (587)
T 1gpe_A          240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL  302 (587)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             hhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence            34567999999999999986432   467777764  564  5678 8999999976555543

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.94  E-value=0.035  Score=58.62  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             CCEEEECCChHHHHHHHHHh---h-CCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLV---I-NKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~---~-~g~~Vtlv~~~~  195 (479)
                      -.|+|||+|..|+-+|..++   + .|.+|+++++.+
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            36999999999999999999   5 899999998764

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=95.92  E-value=0.0053  Score=63.55  Aligned_cols=52  Identities=19%  Similarity=0.346  Sum_probs=39.1

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc--EEecc-EEEEecCCC
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN--RLPTD-MVVVGIGIR  261 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~--~i~~D-~Vi~a~G~~  261 (479)
                      +....++.|+++++++.|++|..++++++..|.+.+   |+  ++.++ .||+|+|.-
T Consensus       215 l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~  272 (546)
T 2jbv_A          215 IHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI  272 (546)
T ss_dssp             TGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence            333334679999999999999874337777887644   53  68898 999999964

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.91  E-value=0.032  Score=57.00  Aligned_cols=62  Identities=15%  Similarity=0.092  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC------cEEEEEeCCC-----cEEeccEEEEecCCCCChh
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG------KVVAVNLRDG-----NRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g------~v~~v~~~~g-----~~i~~D~Vi~a~G~~p~~~  265 (479)
                      .++.++++...++.+..+.++++|++++..+++      ....|+..++     +++.++.|++|+|..|..+
T Consensus       145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             HHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            356677777777777788999999999864322      2345555443     3688999999999887754

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=95.89  E-value=0.0033  Score=65.25  Aligned_cols=35  Identities=29%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~   41 (479)
                      .||+||||||+||+.+|.+|++ .+.+   |+|||+.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~---VlllEaG~~   37 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVS---VLVLEAGVS   37 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCC---EEEECSSBC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCc---EEEEecCCc
Confidence            4899999999999999999998 3555   999999864

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.62  E-value=0.012  Score=59.22  Aligned_cols=82  Identities=21%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .++++.|||.|.+|+-+|..|.++|.+|++.+..+...    ++     ..+.|++.||+++.+....++          
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~----------   68 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL----------   68 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence            57899999999999999999999999999998764211    12     234577789998876531100          


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                        + ++   .+|.||+++|..|+.+.+
T Consensus        69 --~-~~---~~d~vv~spgi~~~~p~~   89 (451)
T 3lk7_A           69 --L-DE---DFCYMIKNPGIPYNNPMV   89 (451)
T ss_dssp             --G-GS---CEEEEEECTTSCTTSHHH
T ss_pred             --h-cC---CCCEEEECCcCCCCChhH
Confidence              0 00   179999999998877644

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=95.42  E-value=0.029  Score=56.70  Aligned_cols=39  Identities=15%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      |++.+||+|||+|++|+++|..|++.|++   |+++|+++..
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~---v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKK---ILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeccCCC
Confidence            56679999999999999999999999988   9999999753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.29  E-value=0.021  Score=54.80  Aligned_cols=81  Identities=17%  Similarity=0.166  Sum_probs=59.1

Q ss_pred             CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      ..+++.|||.|-+|+. +|..|.++|.+|++.+..+.      ++     ..+.|++.||+++.+.....+         
T Consensus         3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~------~~-----~~~~L~~~gi~v~~g~~~~~l---------   62 (326)
T 3eag_A            3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY------PP-----MSTQLEALGIDVYEGFDAAQL---------   62 (326)
T ss_dssp             CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC------cH-----HHHHHHhCCCEEECCCCHHHc---------
Confidence            3688999999999997 89999999999999987643      11     234567789998865421100         


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                          ..   -.+|.||+++|..|..+.+.
T Consensus        63 ----~~---~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           63 ----DE---FKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             ----GS---CCCSEEEECTTCCTTCHHHH
T ss_pred             ----CC---CCCCEEEECCCcCCCCHHHH
Confidence                00   14799999999998877553

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.23  E-value=0.054  Score=48.68  Aligned_cols=107  Identities=16%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       +.+++.    +..++.+++++....    +.        
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~l~----~l~~~~~i~~i~~~~----~~--------   86 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAEIN----EWEAKGQLRVKRKKV----GE--------   86 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHHHH----HHHHTTSCEEECSCC----CG--------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHHHH----HHHHcCCcEEEECCC----CH--------
Confidence            5799999999999999999999999999999753       344443    333455677664321    11        


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCc----ccC-CCCCeEEEeeec
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR----LQS-SNSSVYAVGDVA  298 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~----l~t-~~~~IyA~GD~~  298 (479)
                           ..--.+|+|+.||+............  . .+|.||.-    +-+ ..|.++--||..
T Consensus        87 -----~dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~  141 (223)
T 3dfz_A           87 -----EDLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS  141 (223)
T ss_dssp             -----GGSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred             -----hHhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence                 01124799999998764433222111  2 45666621    222 456776666654

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=95.19  E-value=0.012  Score=59.92  Aligned_cols=35  Identities=26%  Similarity=0.318  Sum_probs=31.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      |+|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence            68999999999999999999999999999998764

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=94.92  E-value=0.049  Score=57.55  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=29.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhC------CCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~------g~~Vtlv~~~  194 (479)
                      -.|+|||+|..|+-.|..+++.      |.+|+++++.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3699999999999999999997      9999999874

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.90  E-value=0.016  Score=55.53  Aligned_cols=74  Identities=9%  Similarity=0.185  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCCCCEEEECCChHHHHHHHHHhh--CCCeEEEEeecCcccccc------CC-HHHHHHHHHHHHhCCcEEE
Q 011700          152 RLVNVMKSCSGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMARL------FT-PKIASYYEEYYKSKGVKFV  222 (479)
Q Consensus       152 ~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l~~~------~~-~~~~~~~~~~l~~~GV~i~  222 (479)
                      +....+.+.....|+|||+|+.|+-+|..|++  .|.+|+++++.+.+-...      ++ ..+.+.+.+.+++.|+++.
T Consensus        55 ~~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~  134 (326)
T 3fpz_A           55 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE  134 (326)
T ss_dssp             HHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCE
T ss_pred             HHHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEE
Confidence            33344444456789999999999999999974  599999999876532111      01 1112233455677888876


Q ss_pred             cCC
Q 011700          223 KGT  225 (479)
Q Consensus       223 ~~~  225 (479)
                      .+.
T Consensus       135 ~~~  137 (326)
T 3fpz_A          135 DEG  137 (326)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            543

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.58  E-value=0.037  Score=56.37  Aligned_cols=62  Identities=21%  Similarity=0.286  Sum_probs=46.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC-----------------HHHHHHHHHHHHhCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-----------------PKIASYYEEYYKSKGVKFV  222 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~-----------------~~~~~~~~~~l~~~GV~i~  222 (479)
                      .+.+|+|||+|.+|+.+|..|.+.|.+|+++++.+++..+...                 ......+.+.+++.|+++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~  110 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  110 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence            3578999999999999999999999999999988765443100                 0113456677788887653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.47  E-value=0.04  Score=57.63  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC-CcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      ..++.+.+.+.++..|.++++++.|.+|..+++ +++..+.+.+|+++.||.||......|.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~  438 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  438 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence            457888888999999999999999999987443 7888888888999999999997765553

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.23  E-value=0.064  Score=45.03  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=30.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      .+.+++|+|+|.-|...|..|.+.|++   |++++++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~   35 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQN---VTVISNL   35 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence            357899999999999999999998887   9999886

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.02  E-value=0.058  Score=54.24  Aligned_cols=80  Identities=19%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .+++.|||.|.+|+++|..|.++|++   |++.|..+..                               .....+.+++
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~~-------------------------------~~~~~~~L~~   54 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPFD-------------------------------ENPTAQSLLE   54 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCGG-------------------------------GCHHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCccc-------------------------------CChHHHHHHh
Confidence            46899999999999999999999987   8999886410                               0112345677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      .|+++..+..     +++    ..++   .+|.||+++|..+..|.
T Consensus        55 ~gi~~~~g~~-----~~~----~~~~---~~d~vv~spgi~~~~p~   88 (451)
T 3lk7_A           55 EGIKVVCGSH-----PLE----LLDE---DFCYMIKNPGIPYNNPM   88 (451)
T ss_dssp             TTCEEEESCC-----CGG----GGGS---CEEEEEECTTSCTTSHH
T ss_pred             CCCEEEECCC-----hHH----hhcC---CCCEEEECCcCCCCChh
Confidence            8999887742     110    0010   17999999998776554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.99  E-value=0.06  Score=51.63  Aligned_cols=78  Identities=13%  Similarity=0.002  Sum_probs=53.7

Q ss_pred             cCeEEEECCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            4 AFVYVIVGGGVAAGY-AALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      .+++.|||.|.+|++ +|..|.++|++   |++.|..+..                                 ...+.++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~~---------------------------------~~~~~L~   47 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMYP---------------------------------PMSTQLE   47 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCCT---------------------------------THHHHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCCc---------------------------------HHHHHHH
Confidence            368999999999997 78888898987   8999887420                                 1134567


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      +.|+++..+..     ++.    +..   -.+|.||+++|-.+..|.
T Consensus        48 ~~gi~v~~g~~-----~~~----l~~---~~~d~vV~Spgi~~~~p~   82 (326)
T 3eag_A           48 ALGIDVYEGFD-----AAQ----LDE---FKADVYVIGNVAKRGMDV   82 (326)
T ss_dssp             HTTCEEEESCC-----GGG----GGS---CCCSEEEECTTCCTTCHH
T ss_pred             hCCCEEECCCC-----HHH----cCC---CCCCEEEECCCcCCCCHH
Confidence            78998887631     110    000   147999999997765443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.68  E-value=0.066  Score=44.14  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+++|+|+|.-|...|..|.+.|++   |+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence            5899999999999999999999887   89998873

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.56  E-value=0.099  Score=54.18  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      ++++|+|.|..|..+|..|.+.|.+|+++++.+....
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~  385 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVC  385 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHh
Confidence            8999999999999999999999999999998866443

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.47  E-value=0.064  Score=53.22  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            6899999999999999999999999999987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.24  E-value=0.089  Score=42.95  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++++|||+|.-|...|..|.+.|.+   |+++++++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            46899999999999999999998865   89998763

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.15  E-value=0.098  Score=43.99  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=30.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+++|||+|.-|...|..|.+.|.+   |+++++++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            36899999999999999999998875   99998874

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.08  E-value=0.077  Score=52.57  Aligned_cols=34  Identities=29%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT   35 (425)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence            6899999999999999999999999999988654

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.01  E-value=0.068  Score=53.36  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      ++|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            679999999999999999999999999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.97  E-value=0.1  Score=43.05  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+++|||.|.-|...|..|.+.|++   |+++|+++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIP---LVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence            5799999999999999999998887   99999884

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.79  E-value=0.1  Score=51.66  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=33.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  197 (479)
                      ..+|+|||+|..|+-+|..|++.| .+|+++++++++
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            578999999999999999999999 899999988765

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.75  E-value=0.085  Score=50.86  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            469999999999999999999999999999885

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.58  E-value=0.11  Score=50.73  Aligned_cols=37  Identities=16%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec-Ccc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC  197 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~  197 (479)
                      .+.+|+|||+|..|+-+|..|.+.|.+|++++++ +++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            3578999999999999999999999999999988 543

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.56  E-value=0.088  Score=52.28  Aligned_cols=34  Identities=26%  Similarity=0.478  Sum_probs=31.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            5899999999999999999999999999987654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.48  E-value=0.16  Score=42.54  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=32.7

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .+++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            468899999999999999999999999999987654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=92.47  E-value=0.31  Score=49.32  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+|||||++||+||..|++.|++   |+|+|+.+.
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~---v~v~E~~~~   73 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFK---TLLLEARDR   73 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            7999999999999999999999986   999999864

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.46  E-value=0.095  Score=52.83  Aligned_cols=35  Identities=26%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC--eEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~--~Vtlv~~~~~~  197 (479)
                      ++|+|||+|..|+-+|..|++.|.  +|+++++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            579999999999999999999999  99999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=92.35  E-value=0.13  Score=50.43  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      ++|+|||+|..|++.|..+++.|.+|+++++.+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            479999999999999999999999999999764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.22  E-value=0.16  Score=41.79  Aligned_cols=77  Identities=16%  Similarity=0.245  Sum_probs=50.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      .++++|+|.|.+|..++..|.+.|.+|+++++.+         +..+    .+++.|+.++.+..       .+..   +
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~~~----~~~~~g~~~i~gd~-------~~~~---~   63 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TRVD----ELRERGVRAVLGNA-------ANEE---I   63 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HHHH----HHHHTTCEEEESCT-------TSHH---H
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HHHH----HHHHcCCCEEECCC-------CCHH---H
Confidence            4689999999999999999999999999998652         2222    23456777664421       0000   0


Q ss_pred             EeCCCcEEeccEEEEecCCCC
Q 011700          242 NLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       242 ~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                       +..-..-.+|.|+++++...
T Consensus        64 -l~~a~i~~ad~vi~~~~~~~   83 (140)
T 3fwz_A           64 -MQLAHLECAKWLILTIPNGY   83 (140)
T ss_dssp             -HHHTTGGGCSEEEECCSCHH
T ss_pred             -HHhcCcccCCEEEEECCChH
Confidence             00001225899999988654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.09  E-value=0.13  Score=50.17  Aligned_cols=33  Identities=33%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999999873

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.05  E-value=0.36  Score=45.91  Aligned_cols=85  Identities=25%  Similarity=0.273  Sum_probs=53.4

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN  242 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~  242 (479)
                      .++.|||+|.+|.-+|..|.+.|.+|+++.|++.               +.+++.|+.+..... ..+.. ..  + .+ 
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~---------------~~i~~~Gl~~~~~~~-g~~~~-~~--~-~~-   61 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY---------------ETVKAKGIRIRSATL-GDYTF-RP--A-AV-   61 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH---------------HHHHHHCEEEEETTT-CCEEE-CC--S-CE-
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH---------------HHHHhCCcEEeecCC-CcEEE-ee--e-ee-
Confidence            4799999999999999999999999999987520               234566776653100 00110 00  0 01 


Q ss_pred             eCCCc-EE-eccEEEEecCCCCChhhhh
Q 011700          243 LRDGN-RL-PTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       243 ~~~g~-~i-~~D~Vi~a~G~~p~~~l~~  268 (479)
                      +.+-. .. ++|.|++++......+.++
T Consensus        62 ~~~~~~~~~~~DlVilavK~~~~~~~l~   89 (320)
T 3i83_A           62 VRSAAELETKPDCTLLCIKVVEGADRVG   89 (320)
T ss_dssp             ESCGGGCSSCCSEEEECCCCCTTCCHHH
T ss_pred             ECCHHHcCCCCCEEEEecCCCChHHHHH
Confidence            12222 22 6899999998776555443

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=91.99  E-value=0.14  Score=51.82  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            468999999999999999999999999999987654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=91.96  E-value=0.13  Score=49.88  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .++|+|||+|..|+-+|..|+ .|.+|+++++.+.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~   43 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP   43 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence            578999999999999999999 59999999987543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=91.95  E-value=0.14  Score=52.27  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=32.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            368999999999999999999999999999987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=91.92  E-value=0.17  Score=47.31  Aligned_cols=37  Identities=16%  Similarity=0.190  Sum_probs=33.0

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ||+..+|.|||+|.-|...|..+++.|++   |+++|+++
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~   37 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDINT   37 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCH
Confidence            77778999999999999999999999886   89998774

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.90  E-value=0.12  Score=50.41  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      -+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3699999999999999999999999999998653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=91.86  E-value=0.16  Score=39.99  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~   40 (479)
                      ++++|+|+|..|...+..|.+.| .+   |+++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYS---VTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCCH
Confidence            68999999999999999999987 44   88888763

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=91.75  E-value=0.13  Score=52.59  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  197 (479)
                      ..+|+|||+|..|+-+|..|.+.| .+|+|+++++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            357999999999999999999999 999999988654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.73  E-value=0.15  Score=49.40  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=30.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus         7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            7 KRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            57999999999999999999999999999975

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.70  E-value=0.18  Score=45.33  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +..+|+|||||..|...+..|.+.|.+   |+|++++.
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCCC
Confidence            357899999999999999999998876   99998864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.55  E-value=0.16  Score=49.01  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=29.7

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      ||+.+++.|||+|.-|...|..|++.|++   |++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~   36 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID   36 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence            77778999999999999999999998875   8888776

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=91.54  E-value=0.16  Score=51.12  Aligned_cols=38  Identities=26%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM  198 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  198 (479)
                      ...+|+|||+|..|+-+|..|++.|.+|+++++++++-
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   52 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            35789999999999999999999999999999987643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=91.34  E-value=0.08  Score=53.11  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=32.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC------CeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINK------INVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g------~~Vtlv~~~~~~  197 (479)
                      ++|+|||+|..|+-+|..|++.|      .+|+++++.+++
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999999      999999988654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.28  E-value=0.28  Score=40.99  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            578999999999999999999999999999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.28  E-value=0.21  Score=50.74  Aligned_cols=76  Identities=16%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      ..+++.|||-|-+|+- +|..|.+.|.+|+..+..+       ++     ..+.|++.||++..+.....          
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~~~----------   78 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRPEN----------   78 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCHHH----------
Confidence            3589999999999996 8999999999999987542       12     12457788999887632110          


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhh
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSL  266 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l  266 (479)
                              ...+|.||+++|..|..+.
T Consensus        79 --------~~~~d~vV~Spgi~~~~p~   97 (494)
T 4hv4_A           79 --------VLDASVVVVSTAISADNPE   97 (494)
T ss_dssp             --------GTTCSEEEECTTSCTTCHH
T ss_pred             --------cCCCCEEEECCCCCCCCHH
Confidence                    0137999999999887654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=91.19  E-value=0.28  Score=49.15  Aligned_cols=38  Identities=11%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |+.++||||||||++|++||..|++.|++   |+|+|+++.
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~~~   45 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQDH   45 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCC
Confidence            34568999999999999999999999987   999999975

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=91.13  E-value=0.18  Score=49.41  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .+++|||+|..|+.+|..|.+.|.+|+++++++++
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            47999999999999999999999999999987655

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=90.95  E-value=0.17  Score=50.44  Aligned_cols=38  Identities=13%  Similarity=0.295  Sum_probs=35.0

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |++++|++|||+|++|+++|..|++.|++   |+++|+++.
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~~~   40 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPY   40 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence            67789999999999999999999999987   999999865

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=90.93  E-value=0.19  Score=50.99  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            468999999999999999999999999999998765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=90.89  E-value=0.2  Score=44.77  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++|||+|.-|...|..|.+.|++   |+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            699999999999999999998887   99999874

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.84  E-value=0.22  Score=43.04  Aligned_cols=34  Identities=24%  Similarity=0.058  Sum_probs=30.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~   40 (479)
                      +.+++|||+|.-|...|..|.+. |++   |+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKI---SLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCe---EEEEECCH
Confidence            35799999999999999999998 887   89998874

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=90.72  E-value=0.091  Score=52.62  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=54.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||.|.+|+..|..|.++|.+|+..+..+....   .        ..++ .|+++..+...    .  +    .
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~--~----~   61 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D--E----W   61 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H--H----H
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H--H----H
Confidence            468999999999999999999999999999987653211   1        2345 68887755421    0  0    0


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSL  266 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l  266 (479)
                      +      . .+|.|++++|..|..+.
T Consensus        62 ~------~-~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A           62 L------M-AADLIVASPGIALAHPS   80 (439)
T ss_dssp             H------H-TCSEEEECTTSCTTCHH
T ss_pred             h------c-cCCEEEeCCCCCCCCHH
Confidence            0      1 36899999998776553

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=90.72  E-value=0.19  Score=50.25  Aligned_cols=60  Identities=17%  Similarity=0.304  Sum_probs=44.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccccc----------------CCHHHHHHHHHHHHhCCcEEEc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------FTPKIASYYEEYYKSKGVKFVK  223 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~----------------~~~~~~~~~~~~l~~~GV~i~~  223 (479)
                      .+|+|||+|..|+-+|..|.+.|.+|+++++++++-.+.                +... ...+.+.+++.|++...
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~-~~~~~~~~~~~g~~~~~   81 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPD-QTALISLLDELGLKTFE   81 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTT-CHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCc-cHHHHHHHHHcCCcccc
Confidence            579999999999999999999999999999876543221                1111 23455667788887543

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=90.68  E-value=0.21  Score=49.60  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=31.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH  196 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~  196 (479)
                      ..+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999999999 9999998754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=90.66  E-value=0.66  Score=48.49  Aligned_cols=37  Identities=14%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      .+|||+|||+|..|...|..|++.|.+   |.+||++++.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~~~~   43 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSRSYY   43 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCCcc
Confidence            369999999999999999999999988   9999999874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=90.37  E-value=0.17  Score=49.65  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             CCEEEECCChHHHHHHHHHhh-CC-CeEEEEeecC
Q 011700          163 GNAVVIGGGYIGMECAASLVI-NK-INVTMVFPEA  195 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~-~g-~~Vtlv~~~~  195 (479)
                      .+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            469999999999999999999 89 9999999875

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=90.34  E-value=0.23  Score=49.61  Aligned_cols=35  Identities=23%  Similarity=0.226  Sum_probs=31.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.++|.|||.|.+|+++|..|.++|++   |++.|...
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~   38 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRM   38 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSS
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCC
Confidence            346899999999999999999999987   78988875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.33  E-value=0.27  Score=40.27  Aligned_cols=33  Identities=21%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            478999999999999999999999999999764

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=90.29  E-value=0.19  Score=51.14  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             CeEEEECCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            5 FVYVIVGGGVAAGY-AALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         5 ~dvvIIGgG~aGl~-aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +++.|||-|-+|++ +|..|.++|++   |++.|..+.                                  ...+.+++
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~~----------------------------------~~~~~l~~   65 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAPN----------------------------------SVTQHLTA   65 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSCC----------------------------------HHHHHHHH
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCCC----------------------------------HHHHHHHH
Confidence            68999999999997 69999999987   888876521                                  01234677


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      .|+++..+..     ++.    +     -.+|.||+.+|..+..|.
T Consensus        66 ~gi~~~~g~~-----~~~----~-----~~~d~vV~Spgi~~~~p~   97 (494)
T 4hv4_A           66 LGAQIYFHHR-----PEN----V-----LDASVVVVSTAISADNPE   97 (494)
T ss_dssp             TTCEEESSCC-----GGG----G-----TTCSEEEECTTSCTTCHH
T ss_pred             CCCEEECCCC-----HHH----c-----CCCCEEEECCCCCCCCHH
Confidence            8998887631     110    1     137999999997765543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.26  E-value=0.29  Score=39.90  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+++|+|+|.-|...|..|.+.|.+   |+++++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            5799999999999999999998876   78888763

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.22  E-value=0.25  Score=52.52  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .+|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus       265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  298 (689)
T 3pvc_A          265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ  298 (689)
T ss_dssp             SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            5899999999999999999999999999998643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.21  E-value=0.38  Score=45.72  Aligned_cols=80  Identities=15%  Similarity=0.251  Sum_probs=49.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      ...++.|||+|.+|.-+|..|.+.|.+|+++ +++.         -    .+.+++.|+.+... .. .+..  .  + .
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~---------~----~~~i~~~g~~~~~~-~~-~~~~--~--~-~   76 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQ---------H----VQAIEATGLRLETQ-SF-DEQV--K--V-S   76 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHH---------H----HHHHHHHCEEEECS-SC-EEEE--C--C-E
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHh---------H----HHHHHhCCeEEEcC-CC-cEEE--e--e-e
Confidence            3678999999999999999999999999998 4321         1    12344567766522 11 1111  0  0 1


Q ss_pred             EEeCCCcE-EeccEEEEecCCCC
Q 011700          241 VNLRDGNR-LPTDMVVVGIGIRP  262 (479)
Q Consensus       241 v~~~~g~~-i~~D~Vi~a~G~~p  262 (479)
                      . ..+-+. -++|.|++++....
T Consensus        77 ~-~~~~~~~~~~D~vilavk~~~   98 (318)
T 3hwr_A           77 A-SSDPSAVQGADLVLFCVKSTD   98 (318)
T ss_dssp             E-ESCGGGGTTCSEEEECCCGGG
T ss_pred             e-eCCHHHcCCCCEEEEEccccc
Confidence            1 122111 25899999987653

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=90.18  E-value=0.23  Score=48.83  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .+++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus        30 ~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           30 FDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            47999999999999999999999999999987654

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.14  E-value=0.36  Score=49.41  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=57.1

Q ss_pred             CCCCEEEECCChHHHH-HHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          161 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      ..+++.+||-|-+|+- +|..|.++|.+|+..+....      ++     ..+.|++.||++..+.....+         
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~---------   77 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL---------   77 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence            5789999999999997 68889999999999887532      11     234567789998766421110         


Q ss_pred             EEEeCCCcEEeccEEEEecCCCCChhhh
Q 011700          240 AVNLRDGNRLPTDMVVVGIGIRPNTSLF  267 (479)
Q Consensus       240 ~v~~~~g~~i~~D~Vi~a~G~~p~~~l~  267 (479)
                              .-.+|.||+++|..|..+.+
T Consensus        78 --------~~~~d~vV~Spgi~~~~p~l   97 (524)
T 3hn7_A           78 --------QPAPDLVVVGNAMKRGMDVI   97 (524)
T ss_dssp             --------CSCCSEEEECTTCCTTSHHH
T ss_pred             --------CCCCCEEEECCCcCCCCHHH
Confidence                    01479999999998877644

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.09  E-value=0.29  Score=46.60  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |.+.++|.|||+|.-|...|..|++.|+.  +|+++|.++
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence            66678999999999999999999998872  399998874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=90.08  E-value=0.27  Score=50.66  Aligned_cols=34  Identities=21%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhh---CCCeEEEEeecC
Q 011700          162 GGNAVVIGGGYIGMECAASLVI---NKINVTMVFPEA  195 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~---~g~~Vtlv~~~~  195 (479)
                      ..+|+|||+|..|+-+|..|++   .|.+|+|+++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=90.04  E-value=0.3  Score=39.83  Aligned_cols=33  Identities=24%  Similarity=0.092  Sum_probs=30.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .++++|+|+|.+|..++..|.+.|.+|+++.+.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999988764

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=90.02  E-value=0.22  Score=49.06  Aligned_cols=36  Identities=19%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~  197 (479)
                      ..+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            35899999999999999999998 9999999988654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=89.84  E-value=0.19  Score=48.37  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=29.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCC------CeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVINK------INVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g------~~Vtlv~~~~  195 (479)
                      +|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            5899999999999999999998      8999999874

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=89.79  E-value=2  Score=42.61  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .+.++.|||.|++|+-+|..|++.|.+|+.+++.+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47889999999999999999999999999998764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=89.65  E-value=0.16  Score=47.13  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.++|+|||||..|...+..|.+.|.+   |+||+++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCC
Confidence            357899999999999999999998876   99999874

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.63  E-value=0.3  Score=47.43  Aligned_cols=35  Identities=17%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.+|||+|+|.||..+|..|...|.+  +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            56899999999999999999999974  499999874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=89.48  E-value=0.37  Score=45.95  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=31.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |+..++|.|||+|..|...|..|+..|+-  +|+++|.++
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence            66667999999999999999999998872  299998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=89.45  E-value=0.5  Score=45.24  Aligned_cols=78  Identities=15%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      ..++.|||+|.+|.-+|..|.+.|.+|+++.|.++              .+.+++.|+.+.... . ....  .  + ..
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~--------------~~~~~~~g~~~~~~~-~-~~~~--~--~-~~   61 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGAT--------------LQALQTAGLRLTEDG-A-THTL--P--V-RA   61 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHH--------------HHHHHHTCEEEEETT-E-EEEE--C--C-EE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHH--------------HHHHHHCCCEEecCC-C-eEEE--e--e-eE
Confidence            35899999999999999999999999999876311              123556788765321 1 1111  0  0 11


Q ss_pred             EeCCCc-EEeccEEEEecCCC
Q 011700          242 NLRDGN-RLPTDMVVVGIGIR  261 (479)
Q Consensus       242 ~~~~g~-~i~~D~Vi~a~G~~  261 (479)
                       ..+-. .-++|.|++++...
T Consensus        62 -~~~~~~~~~~D~Vilavk~~   81 (335)
T 3ghy_A           62 -THDAAALGEQDVVIVAVKAP   81 (335)
T ss_dssp             -ESCHHHHCCCSEEEECCCHH
T ss_pred             -ECCHHHcCCCCEEEEeCCch
Confidence             11211 23589999998653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=89.41  E-value=0.24  Score=49.81  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~  197 (479)
                      .+|+|||+|..|+-+|..|.+.|  .+|+++++.+++
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            57999999999999999999999  999999987653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=89.40  E-value=0.34  Score=51.17  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM  198 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  198 (479)
                      .++++|||+|..|+.+|..|.+.|.+|+++++.+++-
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  143 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            5789999999999999999999999999999887653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=89.37  E-value=0.36  Score=47.33  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=30.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|||+|..|+.+|..|...|.+   |+++|..+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence            46899999999999999999998875   89998875

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=89.32  E-value=0.33  Score=52.69  Aligned_cols=37  Identities=24%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM  198 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  198 (479)
                      .++|+|||+|..|+.+|..|.+.|.+|+++++.+++-
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            4689999999999999999999999999999887653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=89.30  E-value=0.27  Score=47.84  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=31.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +++|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            5899999999999999999999999999987653

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=89.20  E-value=0.41  Score=46.35  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=31.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++|+|||||.-|..++..++++|++   ++++|+++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCC
Confidence            6899999999999999999999998   889988764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=89.11  E-value=0.44  Score=38.64  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=29.3

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ..+++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            357999999999999999999999999998764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.00  E-value=0.36  Score=37.83  Aligned_cols=33  Identities=33%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~  194 (479)
                      .++++|+|+|.+|..++..|.+.| .+|+++.|.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            468999999999999999999999 889888765

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.00  E-value=0.36  Score=46.85  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      .+.+|||+|+|.+|..+|..|...|.+  +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECC
Confidence            357899999999999999999998864  49999998

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=88.92  E-value=0.32  Score=45.11  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4789999999999999999999999999999865

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=88.26  E-value=0.45  Score=45.23  Aligned_cols=32  Identities=16%  Similarity=0.384  Sum_probs=28.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      +++.|||+|.-|...|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRS   34 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCE---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence            6899999999999999999998875   8998776

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=88.18  E-value=0.49  Score=47.89  Aligned_cols=36  Identities=22%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCcc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC  197 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  197 (479)
                      ..+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            468999999999999999999998 799999988654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.05  E-value=0.41  Score=46.54  Aligned_cols=34  Identities=21%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|||+|..|+.+|..|...|.+   |+++|+.+
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            46899999999999999999998875   89998874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=87.96  E-value=0.44  Score=45.26  Aligned_cols=92  Identities=11%  Similarity=-0.060  Sum_probs=0.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC-CeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC-ceEEEEEcCCCcEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT-VLSSFDVDSNGKVVA  240 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~-~v~~i~~~~~g~v~~  240 (479)
                      .++.|||.|.+|.-+|..|.+.| .+|+++.+.+....+      .+...+.+.+.|+    -. .+.+.-.        
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~----~~~s~~e~~~--------   86 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV----EPLDDVAGIA--------   86 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC----EEESSGGGGG--------
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC----CCCCHHHHHh--------


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT  281 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd  281 (479)
                               .+|.|+++++.......++.-... ..+.+.||
T Consensus        87 ---------~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           87 ---------CADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             ---------GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             ---------cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=87.95  E-value=1.4  Score=41.55  Aligned_cols=72  Identities=25%  Similarity=0.296  Sum_probs=0.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL  243 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~  243 (479)
                      ++.|||+|.+|.-+|..|. .|.+|+++.|+             +.-.+.+++.|+.+...... ....        +..
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~-------------~~~~~~l~~~G~~~~~~~~~-~~~~--------~~~   60 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR-------------QEQAAAIQSEGIRLYKGGEE-FRAD--------CSA   60 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TTSEEEEECSC-------------HHHHHHHHHHCEEEEETTEE-EEEC--------CEE
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCceEEEECC-------------HHHHHHHHhCCceEecCCCe-eccc--------ccc


Q ss_pred             CCCcEEeccEEEEec
Q 011700          244 RDGNRLPTDMVVVGI  258 (479)
Q Consensus       244 ~~g~~i~~D~Vi~a~  258 (479)
                      .....-++|.|++++
T Consensus        61 ~~~~~~~~D~vilav   75 (307)
T 3ego_A           61 DTSINSDFDLLVVTV   75 (307)
T ss_dssp             ESSCCSCCSEEEECC
T ss_pred             cccccCCCCEEEEEe

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.89  E-value=0.58  Score=44.46  Aligned_cols=37  Identities=22%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      |++++|+|||+|..|.+.|..|+..+. ..+|.++|.+
T Consensus         4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~   40 (317)
T 3d0o_A            4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD   40 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence            345799999999999999999998765 3468998865

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=87.78  E-value=0.5  Score=44.87  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM  198 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  198 (479)
                      .++|.|||+|.+|.-+|..++..|.+|++++..+..+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l   42 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQI   42 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            4789999999999999999999999999998765443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=87.70  E-value=0.43  Score=43.61  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||+|-.|..+|..|++.|..  +|+++|++..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence            36899999999999999999999864  4999998854

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=87.63  E-value=0.64  Score=44.09  Aligned_cols=36  Identities=8%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      |+..+|.|||+|.-|.+.|..|+..|+  .+|+++|.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence            445789999999999999999999887  369999887

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=87.51  E-value=0.5  Score=44.74  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=28.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      +++.|||+|.-|.+.|..|++.|.+   |++++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence            6899999999999999999998875   8998775

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=87.43  E-value=0.29  Score=48.85  Aligned_cols=31  Identities=29%  Similarity=0.322  Sum_probs=29.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCC-CeEEEEee
Q 011700          163 GNAVVIGGGYIGMECAASLVINK-INVTMVFP  193 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g-~~Vtlv~~  193 (479)
                      .+|+|||+|..|+-+|..|++.| .+|+++++
T Consensus        24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            47999999999999999999999 99999998

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=87.33  E-value=0.55  Score=45.47  Aligned_cols=37  Identities=11%  Similarity=0.062  Sum_probs=30.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ||+.++|.|||.|.-|...|..|++.|++   |+++++++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            66678999999999999999999999876   88887763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=87.00  E-value=0.69  Score=43.95  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++|+|||+|..|.+.|..|+..+. ..+|+++|.++
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            4799999999999999999999765 34699998764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=86.97  E-value=0.48  Score=44.52  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=30.4

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |+.+++|.|||.|.-|...|..|++.|++   |+++++++
T Consensus        12 M~~~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~~   48 (296)
T 3qha_A           12 TTEQLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIRI   48 (296)
T ss_dssp             ---CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSST
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence            33356899999999999999999999886   89988774

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.88  E-value=0.51  Score=40.61  Aligned_cols=33  Identities=15%  Similarity=0.099  Sum_probs=30.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhC-CCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~-g~~Vtlv~~~  194 (479)
                      +.+++|+|.|.+|..++..|.+. |.+|++++++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~   72 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIR   72 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC
Confidence            56899999999999999999999 9999998764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=86.74  E-value=0.7  Score=43.71  Aligned_cols=89  Identities=11%  Similarity=0.050  Sum_probs=0.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      .+|.|||.|.+|.-+|..|.+.|. +|+++.+.+           .+...+.+.+.|+.+  ...+.+.-.         
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~-----------~~~~~~~~~~~g~~~--~~~~~e~~~---------   82 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS-----------AESWRPRAEELGVSC--KASVAEVAG---------   82 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC-----------HHHHHHHHHHTTCEE--CSCHHHHHH---------
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC-----------CHHHHHHHHHCCCEE--eCCHHHHHh---------


Q ss_pred             EeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEc
Q 011700          242 NLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT  281 (479)
Q Consensus       242 ~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd  281 (479)
                              .+|.|++++......+.++.-... ..+.+.+|
T Consensus        83 --------~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd  115 (312)
T 3qsg_A           83 --------ECDVIFSLVTAQAALEVAQQAGPHLCEGALYAD  115 (312)
T ss_dssp             --------HCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEE
T ss_pred             --------cCCEEEEecCchhHHHHHHhhHhhcCCCCEEEE

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=86.17  E-value=0.77  Score=45.22  Aligned_cols=36  Identities=11%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ||..++|.|+|+|..|...+..+.++|++   +.+++ .+
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~---v~~~d-~~   56 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQ---VNVLD-AD   56 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCE---EEEEE-ST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEE-CC
Confidence            66678999999999999999999999997   78888 54

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=86.17  E-value=0.78  Score=43.86  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      .+++.|||+|.-|...|..|++.|++   |++++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEA---INVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence            47899999999999999999998876   8888764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=86.02  E-value=0.68  Score=45.58  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|||+|.+|+.+|..|...|.+   |+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence            46899999999999999999998864   89988774

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=85.76  E-value=0.62  Score=43.63  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++.|||+|.-|.+.|..|++.|.+   |+++++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEecc
Confidence            6899999999999999999998875   89998873

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=85.67  E-value=0.79  Score=44.81  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|||+|.+|+.++..+...|.+   |+++++.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence            46899999999999999999998864   89988774

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=85.53  E-value=0.67  Score=43.15  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      -+++.|||+|.+|..+|..|++.|.+|+++++++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999987654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=85.32  E-value=0.71  Score=45.60  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.+|+|||.|.-|...|..|.+.|.+   |++||.++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence            46799999999999999999999887   99999884

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=85.30  E-value=0.91  Score=43.09  Aligned_cols=38  Identities=24%  Similarity=0.395  Sum_probs=31.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      |.++.+|+|||+|..|.+.|..|+..+. ..++.|+|.+
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~-~~el~L~Di~   39 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV   39 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCC-CCEEEEEeCC
Confidence            5556899999999999999999988765 3568998875

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.05  E-value=0.72  Score=43.18  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      |++++++.|||+|.-|...|..|.+.|++   |++++++
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~~~   36 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVT---VYAFDLM   36 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCE---EEEECSS
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCe---EEEEeCC
Confidence            77778999999999999999999998875   8888765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=84.99  E-value=0.6  Score=41.66  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=28.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEE-EcCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCI-ISEE   39 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~l-ie~~   39 (479)
                      .+++.|||+|.-|...|..|++.|++   |++ ++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~   56 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRG   56 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence            46899999999999999999998876   777 6655

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=84.93  E-value=0.93  Score=43.28  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||+|-.|..+|..|++.|..  +++++|....
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg--~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVR--KITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEecCCEe
Confidence            46899999999999999999999864  5999998864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=84.92  E-value=0.83  Score=45.67  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|.|||.|.-|+..|..|++.|++   |++++.++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence            6899999999999999999999886   89998874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.87  E-value=0.8  Score=42.83  Aligned_cols=36  Identities=31%  Similarity=0.472  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||+|-.|..+|..|++.|.  ++++|+|.+..
T Consensus        36 ~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V   71 (292)
T 3h8v_A           36 TFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV   71 (292)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence            4689999999999999999999985  46999998854

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=84.84  E-value=0.8  Score=40.62  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             CCCcCeEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |+..++++|.|| |.-|...+..|.+.|++   |+++++.+
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~   38 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHP   38 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCc
Confidence            555578999996 99999999999998875   89988874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=84.80  E-value=0.69  Score=46.55  Aligned_cols=36  Identities=14%  Similarity=0.017  Sum_probs=31.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHc-CC-CCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKR-GV-PPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~-~~~~V~lie~~~~   41 (479)
                      ..++|.|||.|.-|+..|..|++. |+ +   |+++|.++.
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~---V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEK---VLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCE---EEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECChh
Confidence            346899999999999999999999 88 6   999998853

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=84.77  E-value=0.58  Score=38.50  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++++|||.|.+|..++..|...|.+|+++.|.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4789999999999999999999999998887664

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=84.70  E-value=0.87  Score=43.28  Aligned_cols=39  Identities=23%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCC-CCcEEEEcCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVP-PGELCIISEE   39 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~-~~~V~lie~~   39 (479)
                      ||+.++|.|||+|.-|...|..|.+.|.. ..+|++++++
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            45567899999999999999999998831 1248888766

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=84.62  E-value=0.84  Score=41.70  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||+|-.|..+|..|++.|..  +++|+|.+..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg--~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVG--TLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCS--EEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCC--eEEEEeCCCc
Confidence            46899999999999999999999865  5999998854

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=84.48  E-value=0.97  Score=43.17  Aligned_cols=34  Identities=12%  Similarity=0.223  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|.|||+|.-|.+.|..|++.|+-  +|+++|.++
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~--~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCh
Confidence            5899999999999999999998872  299998874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.35  E-value=1.9  Score=43.16  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+++++|||+|.+|...+..|.+.|.+|+++.+.       +.+++.    +..++.+++++.+..    +         
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~-------~~~~~~----~l~~~~~i~~~~~~~----~---------   66 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQFT----VWANEGMLTLVEGPF----D---------   66 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHHHH----HHHTTTSCEEEESSC----C---------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC-------CCHHHH----HHHhcCCEEEEECCC----C---------
Confidence            4789999999999999999999999999999764       344432    223345676664321    1         


Q ss_pred             EEeCCCcEEeccEEEEecCCCC-Chhhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRP-NTSLF  267 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p-~~~l~  267 (479)
                          .+.--.+|+|+.++|... |..+.
T Consensus        67 ----~~~l~~~~lVi~at~~~~~n~~i~   90 (457)
T 1pjq_A           67 ----ETLLDSCWLAIAATDDDTVNQRVS   90 (457)
T ss_dssp             ----GGGGTTCSEEEECCSCHHHHHHHH
T ss_pred             ----ccccCCccEEEEcCCCHHHHHHHH
Confidence                000114789999998763 44433

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=84.29  E-value=0.81  Score=45.87  Aligned_cols=34  Identities=26%  Similarity=0.212  Sum_probs=30.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++|+|||+|..|...+..|.+.|.+   |++++++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~---V~vi~~~~   45 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF   45 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCE---EEEEcCCC
Confidence            57899999999999999999998876   99999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=84.21  E-value=1.2  Score=44.66  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=31.5

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGV-PPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~-~~~~V~lie~~~~   41 (479)
                      |.+.+||+|||||++|+++|..|++.|. +   |+|+|+.+.
T Consensus         1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~---v~~~e~~~~   39 (472)
T 1b37_A            1 ATVGPRVIVVGAGMSGISAAKRLSEAGITD---LLILEATDH   39 (472)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHHTTCCC---EEEECSSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhcCCCc---eEEEeCCCC
Confidence            3457899999999999999999999887 5   999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.19  E-value=0.94  Score=42.51  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      +++.|||+|.-|...|..|++.|++   |++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence            5899999999999999999998875   8888776

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=84.11  E-value=0.97  Score=42.75  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|+|||+|.-|...|..|++.|+ ..+|++++.++
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence            689999999999999999999876 12499998763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=83.81  E-value=1.1  Score=42.37  Aligned_cols=34  Identities=12%  Similarity=0.207  Sum_probs=29.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|.|||+|..|...|..|+..|+-  +|+++|.++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~--~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC--eEEEEeCCc
Confidence            6899999999999999999988752  299998763

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=83.67  E-value=1  Score=42.66  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=30.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|..-|..+++.|++   |+++|.++
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            5799999999999999999999998   99999875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=83.62  E-value=1.3  Score=41.76  Aligned_cols=34  Identities=12%  Similarity=0.094  Sum_probs=29.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+++.|||+|.-|...|..|.+.|++   |+++++++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            47899999999999999999998875   88887763

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=83.37  E-value=1  Score=47.10  Aligned_cols=35  Identities=29%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      -.++|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus        47 ~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~   81 (623)
T 3pl8_A           47 YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   81 (623)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence            46999999999999999999999999999987643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.35  E-value=1.1  Score=43.32  Aligned_cols=34  Identities=29%  Similarity=0.241  Sum_probs=29.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|+|+|.+|..++..|+..|.+   |+++++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~---V~v~dr~~  200 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV  200 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence            36899999999999999999998874   89988763

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=83.35  E-value=1.4  Score=40.75  Aligned_cols=34  Identities=18%  Similarity=0.094  Sum_probs=30.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++|+|.|+|.-|...+..|.+.|++   |+++++.+
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHE---VTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC---EEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence            46899999999999999999998886   88888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1nhpa2	123	c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus	4e-22
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	7e-21
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	7e-04
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	3e-20
d1d7ya2	121	c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu	0.002
d1q1ra2	133	c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud	1e-19
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	4e-18
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	7e-10
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	1e-17
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	4e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	1e-15
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	2e-08
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	3e-15
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	0.004
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	1e-13
d1gesa2	116	c.3.1.5 (A:147-262) Glutathione reductase {Escheri	0.004
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-13
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	2e-11
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	2e-11
d1mo9a2	121	c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co	1e-10
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	8e-10
d1feca2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Crith	9e-10
d1aoga2	117	c.3.1.5 (A:170-286) Trypanothione reductase {Trypa	1e-09
d1djqa2	156	c.3.1.1 (A:490-645) Trimethylamine dehydrogenase,	2e-09
d1lvla2	115	c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase	1e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	2e-08
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	6e-05
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	3e-08
d3grsa2	125	c.3.1.5 (A:166-290) Glutathione reductase {Human (	3e-08
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	3e-08
d3lada2	119	c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase	1e-07
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	5e-07
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	9e-07
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	2e-06
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	9e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	3e-06
d1ebda2	117	c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase	9e-06
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	4e-05
d1dxla2	123	c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase	7e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	7e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-04
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	3e-04
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	4e-04
d1d7ya3	97	d.87.1.1 (A:309-405) NADH-dependent ferredoxin red	0.001
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.001
d1q1ra3	103	d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu	0.001
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.001
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 89.1 bits (220), Expect = 4e-22
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194
           G D +N+  +R    A +L          N VVIG GYIG+E A +       VT++   
Sbjct: 3   GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62

Query: 195 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 254
              +      +      E  ++  +    G  +     + +G+V  V + D N    D+V
Sbjct: 63  DRPLGVYLDKEFTDVLTEEMEANNITIATGETVER--YEGDGRVQKV-VTDKNAYDADLV 119

Query: 255 VVGI 258
           VV +
Sbjct: 120 VVAV 123

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (213), Expect = 7e-21
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 8/126 (6%)

Query: 139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN----VTMVFPE 194
                 R + D   L  + +     +  +IGGG++G E A +L          V  +FPE
Sbjct: 16  SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE 73

Query: 195 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 254
              M ++    ++++  E  + +GVK +   ++ S  V      + + L+DG ++ TD +
Sbjct: 74  KGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLIKLKDGRKVETDHI 131

Query: 255 VVGIGI 260
           V  +G+
Sbjct: 132 VAAVGL 137

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 7e-04
 Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 23/117 (19%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
            I+GGG      A    ++    G       E +  +         L             
Sbjct: 41  TIIGGGFLGSELACALGRKARALGT------EVIQLFPEKGNMGKILPEYLSNWTM---- 90

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADV--RRKTLVTATGETISYKILIIATG 122
                      +     G++++    V+S  V   +  +    G  +    ++ A G
Sbjct: 91  -----------EKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 84.0 bits (207), Expect = 3e-20
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 133 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVF 192
           L G+    V  LR L DA R+   ++       +++GGG IG+E AA+     ++V++V 
Sbjct: 4   LQGAT-MPVHTLRTLEDARRIQAGLRP--QSRLLIVGGGVIGLELAATARTAGVHVSLVE 60

Query: 193 PEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTD 252
            +   M+R     +A +   Y+ ++GV       ++            V L DG R+  D
Sbjct: 61  TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDG------VVLLDDGTRIAAD 114

Query: 253 MVVVGIG 259
           MVVVGIG
Sbjct: 115 MVVVGIG 121

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 75  RLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
               +++   G++L     V         ++   G  I+  ++++  G
Sbjct: 76  DFVARYHAAQGVDLRFERSVTG--SVDGVVLLDDGTRIAADMVVVGIG 121

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 82.7 bits (203), Expect = 1e-19
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 14/144 (9%)

Query: 117 LIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGME 176
           L +A+GA              A N  YLR L DA  +   + +      VVIGGGYIG+E
Sbjct: 3   LPVASGAVG-----------KANNFRYLRTLEDAECIRRQLIA--DNRLVVIGGGYIGLE 49

Query: 177 CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSN 235
            AA+ +   ++VT++   A  + R+  P ++++YE  ++  GV    GT +  F++    
Sbjct: 50  VAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQ 109

Query: 236 GKVVAVNLRDGNRLPTDMVVVGIG 259
            KV AV   DG RLP D+V+ GIG
Sbjct: 110 QKVTAVLCEDGTRLPADLVIAGIG 133

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 80.2 bits (196), Expect = 4e-18
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
           VV+G G   +   A L        +             P ++  +  +  ++ ++     
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66

Query: 226 ------VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG--- 276
                 +L       + +   V L DG  LP   +V+  G  P   L    L    G   
Sbjct: 67  APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126

Query: 277 --GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 331
             GI V    +++   VYA+GDV      L G   R+E   +A+         +++P
Sbjct: 127 DDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDP 183

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 55.9 bits (133), Expect = 7e-10
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 19/179 (10%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V++G G+A+     E  + G   G + ++ +E   PY+RP LSK ++             
Sbjct: 7   VVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDA-------- 57

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                 E++         +E +LG   +S D +  T+  + G T+ Y  L++ATGA    
Sbjct: 58  ------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA 111

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNA----VVIGGGYIGMECAASLV 182
           +         A   C      DA          + G+       + G +  +E  ++  
Sbjct: 112 VLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQ 170

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 78.7 bits (192), Expect = 1e-17
 Identities = 36/180 (20%), Positives = 72/180 (40%), Gaps = 15/180 (8%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMV--------------FPEAHCMARLFTPKIASY 209
           N V++G G  G+E A  L  +     +                 +A+   +     +   
Sbjct: 5   NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLR 64

Query: 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG 269
             + Y ++ ++ + GT +++ + D   +V+  + R  +     +   G  + PN  L   
Sbjct: 65  TPDAYAAQNIQLLGGTQVTAINRDRQ-QVILSDGRALDYDRLVLATGGRPLIPNCELASA 123

Query: 270 QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
                  GI +   +Q+S+  + AVGD A F  +L     R+E V +A + A+   A + 
Sbjct: 124 AGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILC 183

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 4e-04
 Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 17/179 (9%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VIVG G+A    A      G   G + ++ +  V P+  P LSK YL  +A A      T
Sbjct: 7   VIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                        Y    I+L+ GT+V + +  R+ ++ + G  + Y  L++ATG R L 
Sbjct: 66  P----------DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL- 114

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAV----VIGGGYIGMECAASLV 182
           +    L+ S A        + + +   +     + G+       +   ++ +E   + +
Sbjct: 115 IPNCELA-SAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNAL 172

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (179), Expect = 1e-15
 Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 14/131 (10%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
           ++++GGG AA  AA     R  P   + I+SE+P  PY RP LSK     + P    +  
Sbjct: 7   FLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLR 65

Query: 67  TCVGANEERLTP-------------KWYNEHGIELVLGTRVKSADVRRKTLVTATGETIS 113
                 +ER                      G+ ++ G +V   DVR   +    G  I+
Sbjct: 66  FKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQIT 125

Query: 114 YKILIIATGAR 124
           Y+  +IATG  
Sbjct: 126 YEKCLIATGGT 136

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 45/204 (22%)

Query: 166 VVIGGGYIGMECAASLVIN--KINVTMVFPEAH--------------------------- 196
           ++IGGG      A S+        V +V  +                             
Sbjct: 8   LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFK 67

Query: 197 --------CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR 248
                      +  +  +++    + ++ GV  + G  +   DV  N       L DG++
Sbjct: 68  QWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMV----KLNDGSQ 123

Query: 249 LPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS---SNSSVYAVGDVAAFPLKLL 305
           +  +  ++  G             LE        R+ +   + S+++  GD A F    L
Sbjct: 124 ITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAACFYDIKL 183

Query: 306 GETRRLEHVDSARKSAKHAVAAIM 329
           G  RR+EH D A  S + A   + 
Sbjct: 184 GR-RRVEHHDHAVVSGRLAGENMT 206

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 70.1 bits (171), Expect = 3e-15
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 11/123 (8%)

Query: 138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 197
            E +  LR + DA+R+   +++   G A++IGGG+IG+E A +L     +V ++   A  
Sbjct: 10  KEYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF 67

Query: 198 MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 257
           +      ++++  ++  +  GVKF   + L   + +         L +   +   + +  
Sbjct: 68  LG--LDEELSNMIKDMLEETGVKFFLNSELLEANEEG-------VLTNSGFIEGKVKICA 118

Query: 258 IGI 260
           IGI
Sbjct: 119 IGI 121

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 4/103 (3%)

Query: 20  ALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK 79
           A    +     GE  II    +       L++     +   R   F   +      +   
Sbjct: 22  ADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKD 80

Query: 80  WYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG 122
              E G++  L + +  A+   +  V      I  K+ I A G
Sbjct: 81  MLEETGVKFFLNSELLEAN---EEGVLTNSGFIEGKVKICAIG 120

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 143 YLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF 202
           Y  D      L  + +        V+G GYIG+E    +        +       +   F
Sbjct: 7   YGIDSDGFFALPALPER-----VAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-F 60

Query: 203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
            P I+    E   ++G +     +  +   +++G +  + L DG     D ++  IG
Sbjct: 61  DPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 79  KWYNEHGIELVLGTRVKSADVRRKTLVTAT---GETISYKILIIATG 122
           +  N  G +L      K+        +T     G + +   LI A G
Sbjct: 70  EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 66.8 bits (161), Expect = 2e-13
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 24/193 (12%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP--------------KIASYYE 211
           +V+G  + G E    L+    +  + + E        +                +     
Sbjct: 4   IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTG 63

Query: 212 EYYKSKGVKFVKGTVLSSFDVDSNGKV-VAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 270
           E  +S+GV     T +++     +      +   +      D +++  G  P        
Sbjct: 64  EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRP 123

Query: 271 LTL---------EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSA 321
            T            G IK    +++S   V+AVGD              +    +ARK  
Sbjct: 124 NTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQG 183

Query: 322 KHAVAAIMEPDKT 334
           + AV  + EP K 
Sbjct: 184 RFAVKNLEEPVKP 196

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 59.0 bits (142), Expect = 2e-11
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
            ++G GYI +E    +    I+  +       + + F   + +  E   K   +  V   
Sbjct: 26  GIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFA 84

Query: 226 VLSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGI 258
            +      S+  +  ++L DG      D V+  +
Sbjct: 85  DVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  +V+G  Y+ +ECA  L    ++VT++          F   +A+   E+ +  G+KF+
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78

Query: 223 KGTVLSSFDVDSNGK--VVAVNLRDGN-----RLPTDMVVVGIG 259
           +  V +  +    G    + V  +  N         + V++ +G
Sbjct: 79  RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 194
           G +A+ V     L +       +    G   VV+GG    +E             M+   
Sbjct: 1   GVNAKGVFDHATLVEE------LDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54

Query: 195 AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV---NLRDGNRLPT 251
                       A   +   +   ++ + G+ ++  + D+NG+V AV         R+ T
Sbjct: 55  EPLKLIKDNETRAYVLDRMKEQG-MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113

Query: 252 DMVVVGIG 259
           D V +G+G
Sbjct: 114 DFVFLGLG 121

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.0 bits (134), Expect = 8e-10
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 21/159 (13%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK-- 223
           +++G G  G   A       +   ++           T ++ ++  +     G   ++  
Sbjct: 9   LILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERM 68

Query: 224 GTVLSSFDVD-SNGKVVAVNLRDG--------NRLPTDMVVVGIGIRP-----NTSLFEG 269
               + F+ +     +  V+L++              D +++  G        NT++FEG
Sbjct: 69  HEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEG 128

Query: 270 QLTLEKGGIKVTGRL-----QSSNSSVYAVGDVAAFPLK 303
           QL LE G IKV   +     Q+S   V+A GDV     +
Sbjct: 129 QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--MARLFTPKIASYYEEYYKSKGVK 220
             A+ +GGGYI +E A      K     V        + R F  ++     E  ++ G+ 
Sbjct: 19  KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78

Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
                  +    +++G    V    G     D+V++ IG
Sbjct: 79  VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 163 GNAVVIGGGYIGMECAASLVINKIN---VTMVFPEAHCMARLFTPKIASYYEEYYKSKGV 219
              + +GGG+I +E A      K     VT+ +     +   F   +     +   + G+
Sbjct: 21  RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79

Query: 220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 258
           + +     +  +++++G    V    G ++  D+V++ I
Sbjct: 80  QILTKENPAKVELNADGSKS-VTFESGKKMDFDLVMMAI 117

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 54.1 bits (129), Expect = 2e-09
 Identities = 23/165 (13%), Positives = 44/165 (26%), Gaps = 14/165 (8%)

Query: 120 ATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAA 179
             G   L  +   + G+DA     L            +        +     ++    A 
Sbjct: 4   TDGTNCLTHDP--IPGADASLPDQL-TPEQVMDGKKKIGKRV--VILNADTYFMAPSLAE 58

Query: 180 SLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 239
            L      VT+V          FT +             V+ +     S  +        
Sbjct: 59  KLATAGHEVTIVSGVHLANYMHFTLEY-PNMMRRLHELHVEELGDHFCSRIEPGR----- 112

Query: 240 AVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLE-KGGIKVTGR 283
            + + +     +     G G+ P  +    +  +E    + VTGR
Sbjct: 113 -MEIYNIWGDGSKRTYRGPGVSPRDANTSHR-WIEFDSLVLVTGR 155

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
            + VV+GGGYIG+E   +       V++V      +    +   A    E  K  G+   
Sbjct: 22  QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTA-PVAESLKKLGIALH 80

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 259
            G  +  ++   NG ++A + + G  RL  D V+V +G
Sbjct: 81  LGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVG 115

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 12/169 (7%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTPKIASYYEEYYKSKGVK 220
           V++G G  G E A  L      VT++  E            +          +  S    
Sbjct: 4   VIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWY 62

Query: 221 FVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKV 280
             +G  +   +           +           +V     PN  L          GI +
Sbjct: 63  RKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILI 122

Query: 281 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
               ++S   VYA+GD A +   + G         +A + A+     + 
Sbjct: 123 DDNFRTSAKDVYAIGDCAEYSGIIAG------TAKAAMEQARVLADILK 165

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 17/177 (9%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           VIVG G      A + ++      E+ +I +EPV  Y +P LS                 
Sbjct: 4   VIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSHYI-----------AGF 48

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                    +  WY + GIE+ L    K  D  RK ++T  GE     +++         
Sbjct: 49  IPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDL 108

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN 184
               G+       +    +   + + V  +  C+  + ++ G     ME A  L   
Sbjct: 109 ARRSGIHTGRGILID--DNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADI 163

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G  ++IGGG IG+E           + +V      M +     +   +++  + +    +
Sbjct: 27  GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-QGADRDLVKVWQKQNEYRFDNIM 85

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIG 259
             T   + +   +G  V     +  +     D V+V  G
Sbjct: 86  VNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 23/104 (22%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
           G +V++G GYI +E A  L       +++      +   F   I++   E  ++ GV+ +
Sbjct: 23  GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVL 81

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGNRLPT-------DMVVVGIG 259
           K + +       +G  V++      RLP        D ++  IG
Sbjct: 82  KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 51.8 bits (123), Expect = 3e-08
 Identities = 44/233 (18%), Positives = 67/233 (28%), Gaps = 74/233 (31%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMV---------------------------------- 191
           +V+G G  G   A         VT+V                                  
Sbjct: 7   LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66

Query: 192 ------------FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT----VLSSFDVDSN 235
                       F +          K+    E   K   V+ VKG       ++  V + 
Sbjct: 67  EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126

Query: 236 GKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR--------LQSS 287
                   ++         +  +G RPNT      L LE+ GIK+T R         ++S
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDE----LGLEQIGIKMTNRGLIEVDQQCRTS 182

Query: 288 NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYL 340
             +++A+GD+   P         L H   A    K A  AI         DY+
Sbjct: 183 VPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIA--GHPSAVDYV 223

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
              VIG G IG+E   S+         V             ++A   ++    +G+K + 
Sbjct: 24  KLGVIGAGVIGLEL-GSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 82

Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIG 259
           G  ++  +V +    V     +G +    D ++V +G
Sbjct: 83  GARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 36/221 (16%), Positives = 57/221 (25%), Gaps = 65/221 (29%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------CMARLFTPKIASYYEEYY 214
           +A+ IGGG  G   +A L        +V              C+        A+      
Sbjct: 44  DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLAR 103

Query: 215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNL------------------------------- 243
              G  +          +     +                                    
Sbjct: 104 TFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNH 163

Query: 244 ---RDGNRLPTDMVVVGIGIRPNT------------SLFEGQLTLEKGGIKVTGRLQSSN 288
                G       +++ +G  P T            +   G     KG + V   LQ+S 
Sbjct: 164 TVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQTSV 223

Query: 289 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 329
            +VYAVGD+   P+              ARKS  +A   +M
Sbjct: 224 PNVYAVGDLIGGPM--------EMFK--ARKSGCYAARNVM 254

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (107), Expect = 9e-07
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV 222
               +IGGG IG+E  +        VT+V  +    A     ++A   +++ K +G+ F 
Sbjct: 24  KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFK 82

Query: 223 KGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVV 256
             T + S   + +  VV + + D        L  ++++V
Sbjct: 83  LSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLV 121

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 24/186 (12%)

Query: 161 SGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG 218
           +G   VV+GGG  G   A  + +    I VT++ P         + ++     +    K 
Sbjct: 1   AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH 60

Query: 219 VKFVKG----TVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------- 266
                      V+       +     V    G     D  VV  GI              
Sbjct: 61  GYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120

Query: 267 ---FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 323
                         + +     S +  ++ +GD +             +   SA    K 
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIAN-------PMPKSGYSANSQGKV 173

Query: 324 AVAAIM 329
           A AA++
Sbjct: 174 AAAAVV 179

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 29/173 (16%), Positives = 43/173 (24%), Gaps = 15/173 (8%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           V+VGGG     AA        P  E+ +I                               
Sbjct: 6   VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTDYYT--------------CYLSNEVIG 50

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                E               V+       D  +K + TA G    Y   ++A G   + 
Sbjct: 51  GDRKLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIY 110

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAAS 180
            +    +G  A+      D       +   +S       VIG   I      S
Sbjct: 111 DKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKS 163

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 24/161 (14%), Positives = 46/161 (28%), Gaps = 23/161 (14%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIASY 209
            ++G G      A      ++   +                   +           +   
Sbjct: 9   CIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVE 68

Query: 210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR-----PNT 264
             + ++ +  +F       +               D   +  D V++ IG       P T
Sbjct: 69  LTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPAT 128

Query: 265 SLFEGQLTLEKGGIKVT--GRLQSSNSSVYAVGDVAAFPLK 303
              +G + L+  G  VT  G  Q+S   V+A GDV     +
Sbjct: 129 KFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 9e-06
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
           + VVIGGGYIG+E   +       VT++      ++  F  ++A+  ++  K KGV+ V 
Sbjct: 24  SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82

Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVV 256
             +    +   +G  V        + +  D V+V
Sbjct: 83  NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 19/156 (12%), Positives = 42/156 (26%), Gaps = 16/156 (10%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMV----------------FPEAHCMARLFTPKIA 207
           + +++G G  G   A       I   ++                +               
Sbjct: 3   DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGAL 62

Query: 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF 267
             + + Y    +     + L    V+     +        +  + +V  G  +     L 
Sbjct: 63  KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122

Query: 268 EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLK 303
                   G I +  + +++   V+A GD    P K
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK 223
             VVIG GYIG+E  +        VT+V   +  +      +I   ++   + +G+KF  
Sbjct: 27  KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-PTMDAEIRKQFQRSLEKQGMKFKL 85

Query: 224 GTVLSSFDVDSNGKVVAVNLRDGNR---LPTDMVVV 256
            T +   D   +G  + V    G     +  D+V+V
Sbjct: 86  KTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLV 121

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-05
 Identities = 37/225 (16%), Positives = 57/225 (25%), Gaps = 62/225 (27%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMV--------FPEAHCMARLFTPKIASYYEEYYKSK 217
           +VIGGG  G+  A           +V             C+ +      A + E  +   
Sbjct: 7   LVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHA 66

Query: 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRL---------------------------- 249
              F       ++ V    +   V+  +                                
Sbjct: 67  DYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVS 126

Query: 250 ------------PTDMVVVGIGIRPNTSLFE----GQLTLEKGGIKVTGRLQSSNSSVYA 293
                          M        PNT        G  T +KG I V     ++   +YA
Sbjct: 127 GKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYA 186

Query: 294 VGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFD 338
           VGDV    L        L  V  A  + +     + E  +  K D
Sbjct: 187 VGDVCGKAL--------LTPV--AIAAGRKLAHRLFEYKEDSKLD 221

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 38/324 (11%), Positives = 65/324 (20%), Gaps = 71/324 (21%)

Query: 8   VIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT 67
           +IVG G +   AA    K    P     I E  VAP        G               
Sbjct: 54  IIVGAGSSGLSAAYVIAKNR--PDLKVCIIESSVAP--------GGGSWLGGQLFS---- 99

Query: 68  CVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK 127
                  +    +  E  I                         +     +  +   +  
Sbjct: 100 --AMVMRKPAHLFLQELEIPYE----------------DEGDYVVVKHAALFISTVLSKV 141

Query: 128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN 187
           L    L      N   + DL                  VV     +         ++   
Sbjct: 142 L---QLPNVKLFNATCVEDLVTRPPTEKGEV---TVAGVVTNWTLVTQAHGTQCCMDPNV 195

Query: 188 VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN 247
           +                       E    K       +      + + G           
Sbjct: 196 I-----------------------ELAGYKNDGTRDLSQKHGVILSTTGH------DGPF 226

Query: 248 RLPTDMVVVGIGIRPNTSLFEGQL-TLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG 306
                  +V I         +G      +  + +     +   ++Y  G   A      G
Sbjct: 227 GAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAEL---DG 283

Query: 307 ETRRLEHVDSARKSAKHAVAAIME 330
             R      +   S  HA   I++
Sbjct: 284 LNRMGPTFGAMALSGVHAAEQILK 307

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 29/162 (17%), Positives = 45/162 (27%), Gaps = 47/162 (29%)

Query: 135 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV------------ 182
           G D   V    D+      V       G    +IG G IG + A  L             
Sbjct: 9   GIDHPKVLSYLDVLRDKAPV-------GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAG 61

Query: 183 -------------------------INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK 217
                                     +   + M+  +A    +         +     S+
Sbjct: 62  FCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSR 121

Query: 218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 259
           GVK + G       +D +G  V +N  +   L  D VV+  G
Sbjct: 122 GVKMIPGVSYQK--IDDDGLHVVIN-GETQVLAVDNVVICAG 160

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 8/134 (5%)

Query: 175 MECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 234
               A+  +   NV +               +    E  +K   V +VKG        + 
Sbjct: 64  KHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEI 123

Query: 235 NGKVVAVNLRDGNRLPTDMVVVG---IGIRPNTSLFE----GQLTLEKGGIKVTGRLQSS 287
           +   +             ++  G    G  P TS       G  T + G I V  R  ++
Sbjct: 124 SVDTIEGENTVVKGKHI-IIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTN 182

Query: 288 NSSVYAVGDVAAFP 301
            S VYA+GDV   P
Sbjct: 183 VSGVYAIGDVIPGP 196

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 23/186 (12%), Positives = 46/186 (24%), Gaps = 27/186 (14%)

Query: 7   YVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFH 66
            +IVG G +   AA    + G                             +    L    
Sbjct: 52  VLIVGAGPSGSEAARVLMESGYTVHLTDT-------------------AEKIGGHLNQVA 92

Query: 67  TCVGANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL 126
              G  E      +      +L+   +     + +K +            +IIATGA   
Sbjct: 93  ALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGASEC 152

Query: 127 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI 186
            L          E+     D+     +       +    ++    + G   A  +     
Sbjct: 153 TLW---NELKARESEWAENDIKGIYLI-----GDAEAPRLIADATFTGHRVAREIEEANP 204

Query: 187 NVTMVF 192
            + + +
Sbjct: 205 QIAIPY 210

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 337 FDYLPFFYSRVFTLSWQFYGDNVGE---VVHYGNFSGTTFGAYWVNKGRLVG 385
           +  LP+++S    L  Q  G   G+   V    +     F    + KGR+VG
Sbjct: 5   YAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVG 56

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTSL 266
           SY   +  ++G+ F +G      +     +  A         L T+ +++  G  P    
Sbjct: 108 SYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLG 167

Query: 267 FEGQ----LTLEKGGIKVTGR--------LQSSNSSVYAVGDVAAFPL 302
            E      L LEK G++V            +++  ++YA+GDV    +
Sbjct: 168 IEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 8/52 (15%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 336 KFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVG 385
           + +  P+F+S  + +  +  G + G   ++  G+ +   F  +++   R++ 
Sbjct: 3   RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLA 54

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 267 FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA 326
               + ++ GG++V    +++ S++YA+GDV             L  V  A   A   V 
Sbjct: 179 QNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV--------MLTPV--AINEAAALVD 228

Query: 327 AIM--EPDKT 334
            +    P KT
Sbjct: 229 TVFGTTPRKT 238

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 15/191 (7%)

Query: 166 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT 225
            ++G G   + CA+ L     +   +F +   +  L T +I  +   Y        +   
Sbjct: 8   ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD 67

Query: 226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG--- 282
           +        +     + L            +GIG+       + +  L            
Sbjct: 68  LGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPE 127

Query: 283 ----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME--PDKTDK 336
                +Q+S   V+A GD+             +E V+  ++++ +    I          
Sbjct: 128 VDPETMQTSEPWVFAGGDIVG------MANTTVESVNDGKQASWYIHKYIQAQYGASVSA 181

Query: 337 FDYLPFFYSRV 347
              LP FY+ V
Sbjct: 182 KPELPLFYTPV 192

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.9
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.88
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.87
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.87
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.86
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.85
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.85
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.81
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.79
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.77
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.76
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.75
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.75
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.75
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.75
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.74
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.74
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.73
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.73
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.67
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.67
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.66
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.66
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.65
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.65
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.65
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.64
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.63
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.61
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.6
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.57
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.55
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.5
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.49
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.48
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.47
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.47
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.46
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.46
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.4
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.28
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.25
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.23
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.19
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.16
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.16
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.16
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.16
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.13
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.12
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.12
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.11
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.11
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.1
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.05
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.03
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.01
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.0
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	98.99
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.99
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.98
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.98
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	98.97
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	98.97
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.97
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.94
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.93
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.92
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	98.91
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.91
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.91
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.9
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.9
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.87
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.87
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.86
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.85
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.84
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.84
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.83
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.82
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.81
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.8
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.8
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.77
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.75
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.75
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.74
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.74
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.73
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.73
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.73
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.72
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.72
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.69
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.69
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.67
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.65
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.64
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.64
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.61
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.6
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.59
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.55
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.54
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.51
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.5
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.46
d1d7ya3	97	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.34
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.33
d1q1ra3	103	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.32
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.31
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.28
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.26
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.24
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.21
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.19
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.15
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.14
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.12
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.1
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.1
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.08
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.06
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.04
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.04
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.03
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.02
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.01
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.0
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.0
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	97.98
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.86
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.85
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.85
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.83
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.8
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.7
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.64
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.63
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.58
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.58
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.52
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.41
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.38
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.38
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.37
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.36
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.33
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.24
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.24
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	97.13
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.12
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.02
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	96.96
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.93
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.89
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.89
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.75
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.74
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.61
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	96.52
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.22
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.13
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.02
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.91
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.57
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.42
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.4
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.37
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.35
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.3
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.17
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.05
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.01
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.82
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.78
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.76
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.69
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.58
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.52
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	94.51
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.47
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.42
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.34
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.28
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.25
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.13
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.04
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.54
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.52
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.4
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	92.92
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.9
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	92.27
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.23
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.92
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.68
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	91.53
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.25
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.2
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.15
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.08
d1m6ia3	131	Apoptosis-inducing factor (AIF) {Human (Homo sapie	90.93
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.9
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	90.8
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	90.76
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.7
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	90.66
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.33
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.12
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	90.06
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.98
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.84
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.82
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.67
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	89.67
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.55
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.38
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.09
d1xhca3	62	NADH oxidase /nitrite reductase {Pyrococcus furios	88.96
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.83
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	88.8
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	88.65
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	88.59
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.52
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	88.35
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.25
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	88.19
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.91
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.87
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.76
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.76
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.73
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.46
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	87.35
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.27
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.89
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.73
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.61
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	86.61
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	85.86
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	85.75
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	85.72
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	85.53
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	85.44
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	85.38
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	85.26
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.0
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	84.92
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.68
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.52
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	84.4
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	84.38
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	84.37
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	84.35
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	84.14
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	83.6
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.52
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	83.45
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	82.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	82.86
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	82.8
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	82.69
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	82.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	82.6
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.35
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	82.22
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.13
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.92
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.87
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.6
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	81.39
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	81.18
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	81.0
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.9
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	80.74
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.64
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	80.55
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	80.34

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.90  E-value=3e-24  Score=190.31  Aligned_cols=163  Identities=23%  Similarity=0.335  Sum_probs=130.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHH----------HHHHhCCcEEEcCCceEEEEE
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE----------EYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~----------~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      .+|+|||+|++|+|+|..|+++|.+++++.+.++.++....+.+...+.          +.+...+|+++++..++++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            5799999999999999999999988888777666554322222222221          223456899999999999875


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcc------cccccCcEEEcCcccCCCCCeEEEeeeccccccccC
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ------LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLG  306 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~------~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g  306 (479)
                        +..  .+.+.+|+++++|.+++|+|..|++.+.+..      +. .+++|.||+++||+.|+|||+|||+..+....|
T Consensus        84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g  158 (183)
T d1d7ya1          84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG  158 (183)
T ss_dssp             --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred             --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence              222  4678999999999999999999987644322      22 356799999999999999999999999888888


Q ss_pred             ceeecccHHHHHHHHHHHHHHHcC
Q 011700          307 ETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       307 ~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ....++++..|..||+.||+||+.
T Consensus       159 ~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         159 RFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceechhHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999999975

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-23  Score=189.28  Aligned_cols=113  Identities=29%  Similarity=0.476  Sum_probs=93.4

Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh-hhhh-ccccc--ccCcEEEcCcccCCCC
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT-SLFE-GQLTL--EKGGIKVTGRLQSSNS  289 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~-~l~~-~~~~~--~~g~i~Vd~~l~t~~~  289 (479)
                      +++.||+++++++|++|+.+ +.   .|.++||+++++|.+|+|+|..|+. .+.. .++..  ..++|.||++|||+ |
T Consensus        93 ~~~~gI~~~~g~~V~~id~~-~~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~  167 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR-DN---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S  167 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG-GT---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred             HHHCCeEEEeCCEEEEeecc-Cc---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence            45789999999999999763 22   5789999999999999999976554 4443 34544  45899999999998 9


Q ss_pred             CeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          290 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       290 ~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      +|||+|||+..+....|. .+++++..|..||+.||+||++..
T Consensus       168 ~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~  209 (213)
T d1m6ia1         168 NIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA  209 (213)
T ss_dssp             TEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred             ceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence            999999999988765554 467899999999999999999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.87  E-value=3.5e-22  Score=179.15  Aligned_cols=166  Identities=22%  Similarity=0.319  Sum_probs=129.1

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCccccccCCHH--------------HHHHHHHHHHhCCcEEEcCCce
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPK--------------IASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~--------------~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      ||+|||+|++|+|+|..|+++  +.+|+++++.+.+..  .++.              +.....+.++++||++++++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V   79 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI   79 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence            699999999999999999987  558999998765411  1111              1122345788899999999999


Q ss_pred             EEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCCC--------Chhhhhccccc-ccCcEEEcCcccCCCCCeEEEee
Q 011700          228 SSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRP--------NTSLFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGD  296 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p--------~~~l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD  296 (479)
                      ++++. ++..++...+.+|+  ++++|.+++++|..|        ++.+++..+.. ++|+|.||+++||+.|+|||+||
T Consensus        80 ~~i~~-~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~GD  158 (198)
T d1nhpa1          80 TAIQP-KEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGD  158 (198)
T ss_dssp             EEEET-TTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred             eeEee-ccccceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEecc
Confidence            99986 33333222344554  588999999998654        45566656555 68899999999999999999999


Q ss_pred             eccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          297 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       297 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      |+..+..+.+....++++..|.+||+.|++||.+..
T Consensus       159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~  194 (198)
T d1nhpa1         159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV  194 (198)
T ss_dssp             GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred             eeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence            999887777777777899999999999999997654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.1e-22  Score=175.76  Aligned_cols=166  Identities=23%  Similarity=0.322  Sum_probs=129.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC--------------CHHHHHHHHHHHHhCCcEEEcCCce
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF--------------TPKIASYYEEYYKSKGVKFVKGTVL  227 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~--------------~~~~~~~~~~~l~~~GV~i~~~~~v  227 (479)
                      .++|+|||+|++|+|+|..|+++|.+|+++.+.+.......              ...............++.+..+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            57999999999999999999999999888776654322111              1111112234456678888888887


Q ss_pred             EEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh---hhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccc
Q 011700          228 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT---SLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKL  304 (479)
Q Consensus       228 ~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~---~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~  304 (479)
                      ..++. +..   .+...++.++++|.+++++|.+|++   .+.+......+++|.||++||||+|+|||+|||+..+...
T Consensus        83 ~~~~~-~~~---~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~~  158 (185)
T d1q1ra1          83 TAINR-DRQ---QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQL  158 (185)
T ss_dssp             EEEET-TTT---EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEETT
T ss_pred             eeecc-ccc---EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhcccccc
Confidence            77764 222   4677888999999999999987754   4544433335678999999999999999999999999888


Q ss_pred             cCceeecccHHHHHHHHHHHHHHHcCC
Q 011700          305 LGETRRLEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       305 ~g~~~~~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      ++.+.+++++..|.+||+.||+||+|+
T Consensus       159 ~~~~~~~~~a~~A~~~g~~aa~~i~G~  185 (185)
T d1q1ra1         159 YDRWVRIESVPNALEQARKIAAILCGK  185 (185)
T ss_dssp             TTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred             CCcccchhhHHHHHHHHHHHHHHccCC
Confidence            888888899999999999999999874

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=1.9e-21  Score=169.22  Aligned_cols=153  Identities=21%  Similarity=0.318  Sum_probs=118.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHH-------------HHHHHHHhCCcEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIAS-------------YYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~-------------~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      |++|||+|++|+|+|..|++ +.+||++++.+.+..  .++.+.+             ...+.+++.++++++++.++++
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i   78 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI   78 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence            79999999999999999975 679999998764321  1222222             2245677889999999999998


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceee
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      +.  +.+   +.+.+++++++|.+++++|..|+..+...++..+ ++|.||+++||+.|+|||+|||+..+...      
T Consensus        79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~------  146 (167)
T d1xhca1          79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------  146 (167)
T ss_dssp             ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------
T ss_pred             cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE------
Confidence            64  332   3456777899999999999987654444556554 46999999999999999999999876542      


Q ss_pred             cccHHHHHHHHHHHHHHHcCC
Q 011700          311 LEHVDSARKSAKHAVAAIMEP  331 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~  331 (479)
                      +..+..|..||+.+|+||+|+
T Consensus       147 ~~~~~~a~~~a~~~a~~i~Ge  167 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILKGE  167 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHTTC
T ss_pred             EChHHHHHHHHHHHHHHcCCC
Confidence            256788999999999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.85  E-value=8.1e-21  Score=155.20  Aligned_cols=120  Identities=32%  Similarity=0.492  Sum_probs=109.3

Q ss_pred             ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHH
Q 011700          128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA  207 (479)
Q Consensus       128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~  207 (479)
                      |++   ||.+. +++++++++|+.++++.+.  ++++++|||+|++|+|+|..|+++|.+||+++++++++++.++++++
T Consensus         2 P~i---pG~~~-~v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~   75 (121)
T d1d7ya2           2 PTL---QGATM-PVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLA   75 (121)
T ss_dssp             GGG---TTCSS-CEEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHH
T ss_pred             ccC---CCCCC-CEEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHH
Confidence            565   77764 4999999999999988876  47999999999999999999999999999999999999987999999


Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      +.+.+.++++||++++++.++++..   +   .+.++||+++++|.|++|+|
T Consensus        76 ~~~~~~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          76 DFVARYHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence            9999999999999999999998863   3   47789999999999999998

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.85  E-value=9.8e-21  Score=155.44  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=112.0

Q ss_pred             CCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHH
Q 011700          133 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE  212 (479)
Q Consensus       133 ~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~  212 (479)
                      +||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|+++|.+||++++.++++++.+|+++++.+.+
T Consensus         1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~   80 (123)
T d1nhpa2           1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE   80 (123)
T ss_dssp             STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred             CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence            37888899999999999999999887767899999999999999999999999999999999999998889999999999


Q ss_pred             HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          213 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       213 ~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                      .++++||++++++.+++++.  ++++..+ +.||++++||.|++|+
T Consensus        81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred             HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence            99999999999999999986  4554434 6788999999999985

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=2.2e-19  Score=149.28  Aligned_cols=120  Identities=38%  Similarity=0.681  Sum_probs=110.6

Q ss_pred             CCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhC
Q 011700          138 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSK  217 (479)
Q Consensus       138 ~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~  217 (479)
                      .++++++++++|+..+++.+.  .+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++++.+++.++++
T Consensus        13 ~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          13 ANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA   90 (133)
T ss_dssp             STTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccc
Confidence            467999999999999988775  479999999999999999999999999999999999999888999999999999999


Q ss_pred             CcEEEcCCceEEEEEcC-CCcEEEEEeCCCcEEeccEEEEecC
Q 011700          218 GVKFVKGTVLSSFDVDS-NGKVVAVNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~-~g~v~~v~~~~g~~i~~D~Vi~a~G  259 (479)
                      ||++++++.+++++... ++++..+.++||+++++|.|++|+|
T Consensus        91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            99999999999998743 4567789999999999999999998

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-20  Score=169.10  Aligned_cols=55  Identities=24%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          269 GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       269 ~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                      .++.+ ++|+|.||+++|||+|+|||+|||+..++          +.+.|..+|+.||++|++...
T Consensus       161 ~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~~  216 (221)
T d3grsa1         161 LGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKE  216 (221)
T ss_dssp             TTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCCT
T ss_pred             cCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCCC
Confidence            34555 67899999999999999999999998653          466799999999999998653

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.8e-20  Score=169.51  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=42.8

Q ss_pred             cCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          275 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       275 ~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                      .|+|.||++||||+|+|||+|||+..+.         .+++.|..+|+.||++|++..
T Consensus       182 ~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~  230 (235)
T d1h6va1         182 TGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS  230 (235)
T ss_dssp             SCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred             cCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence            5889999999999999999999997543         356779999999999999765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.79  E-value=2.9e-19  Score=146.44  Aligned_cols=121  Identities=27%  Similarity=0.496  Sum_probs=106.6

Q ss_pred             CcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCC
Q 011700          124 RALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT  203 (479)
Q Consensus       124 ~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~  203 (479)
                      +|+.|++   ||.  +++++++++.+++++.+.+..  +++++|||||++|+|+|..|+++|.+||++++.+++++  +|
T Consensus         1 R~r~p~i---pG~--e~~~t~~~~~d~~~l~~~~~~--~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d   71 (122)
T d1xhca2           1 RAREPQI---KGK--EYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LD   71 (122)
T ss_dssp             EECCCCS---BTG--GGEECCCSHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CC
T ss_pred             CCCCcCC---CCc--cceEccCCHHHHHHHHHHhhc--CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CC
Confidence            4667776   664  578999999999999888875  68999999999999999999999999999999999875  79


Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      +++++.+.+.|+++||++++++++.+++.  ++    + +.+++++++|.|++|+|.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence            99999999999999999999999999864  32    2 457789999999999994

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=4.2e-19  Score=144.00  Aligned_cols=97  Identities=20%  Similarity=0.326  Sum_probs=90.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.|+++||++++++.+++++.++++.+ .
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~   97 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-T   97 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-E
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-E
Confidence            5899999999999999999999999999999999999986 8999999999999999999999999999998656655 5


Q ss_pred             EEeCCCcEEeccEEEEecC
Q 011700          241 VNLRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G  259 (479)
                      +.+++|+++++|.|++|+|
T Consensus        98 v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          98 LELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEETTSCEEEESEEEECSC
T ss_pred             EEECCCCEEEcCEEEEecC
Confidence            8899999999999999998

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.3e-18  Score=142.19  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=87.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+++.|+++||++++++++++++.++++....
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~  100 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE  100 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999877776666


Q ss_pred             EEeCCC-----cEEeccEEEEe
Q 011700          241 VNLRDG-----NRLPTDMVVVG  257 (479)
Q Consensus       241 v~~~~g-----~~i~~D~Vi~a  257 (479)
                      +.+.++     +++++|.|++|
T Consensus       101 ~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         101 IVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEeCCCCCeEEEEeCEEEEC
Confidence            666554     37999999986

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.75  E-value=3.4e-18  Score=155.44  Aligned_cols=157  Identities=24%  Similarity=0.256  Sum_probs=114.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc------------------------------cc----cccCCH----
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH------------------------------CM----ARLFTP----  204 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~------------------------------~l----~~~~~~----  204 (479)
                      ..++|||+|+.|+++|..+++.|.+|+++++...                              +.    ...++.    
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ   83 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence            4699999999999999999999999999986531                              00    000111    


Q ss_pred             --------HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEec--------CCCCChhhh-
Q 011700          205 --------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI--------GIRPNTSLF-  267 (479)
Q Consensus       205 --------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~--------G~~p~~~l~-  267 (479)
                              .+.+.+...++..+|+++.+.  .++..  ..........+..++.+|.+++++        |++|+++.+ 
T Consensus        84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~  159 (223)
T d1ebda1          84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG  159 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred             hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence                    122334455677899998774  23433  222222222344678999999984        889998843 


Q ss_pred             --hccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          268 --EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       268 --~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                        +.++.+ ++|+|.||++||||+|+|||+|||+..+.          ++..|..||+.||++|++...
T Consensus       160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~~~  218 (223)
T d1ebda1         160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGHPS  218 (223)
T ss_dssp             TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSCCC
T ss_pred             hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCC
Confidence              345766 67899999999999999999999998763          467799999999999998763

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.7e-18  Score=140.44  Aligned_cols=118  Identities=26%  Similarity=0.524  Sum_probs=106.6

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHh----hCCCeEEEEeecCccccccCCHHHHHHHHHHH
Q 011700          139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYY  214 (479)
Q Consensus       139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l  214 (479)
                      ++++.+++++|+.++.+.++.  +++++|||+|++|+|+|..|.    +.|.+|+++++.++++++.+|+++++.+.+.+
T Consensus        16 ~~~~~~r~~~d~~~l~~~~~~--~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l   93 (137)
T d1m6ia2          16 SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV   93 (137)
T ss_dssp             HTEEECCSHHHHHHHHHHHHH--CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred             CcEEEEcCHHHHHHHHHHhhc--CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence            568899999999999888874  789999999999999999996    46899999999999999889999999999999


Q ss_pred             HhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      +++||++++++.|++++.+ ++.+ .+.++||+++++|.|++|+|.
T Consensus        94 ~~~GV~~~~~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          94 RREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCE
T ss_pred             HhCCcEEEeCCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeecC
Confidence            9999999999999999873 4443 689999999999999999983

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.75  E-value=9.4e-19  Score=143.42  Aligned_cols=99  Identities=17%  Similarity=0.205  Sum_probs=88.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.++++||++++++++++++..+++....
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~  103 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVT  103 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEE
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999865654434


Q ss_pred             EEeCCC--cEEeccEEEEecCC
Q 011700          241 VNLRDG--NRLPTDMVVVGIGI  260 (479)
Q Consensus       241 v~~~~g--~~i~~D~Vi~a~G~  260 (479)
                      +...++  +++++|.|++|+||
T Consensus       104 ~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         104 FEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EESSSCCSSCEEESCEEECCCE
T ss_pred             EEeCCCCeEEEEcCEEEEecCC
Confidence            444444  47999999999996

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=3.3e-18  Score=139.24  Aligned_cols=96  Identities=21%  Similarity=0.329  Sum_probs=85.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|++||++++.+++++. +|+++++.+++.++++||++++++++++++.++++.  .
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v--~   97 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQV--T   97 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCE--E
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCEE--E
Confidence            5899999999999999999999999999999999999986 899999999999999999999999999999855542  3


Q ss_pred             EEeCCC---cEEeccEEEEecC
Q 011700          241 VNLRDG---NRLPTDMVVVGIG  259 (479)
Q Consensus       241 v~~~~g---~~i~~D~Vi~a~G  259 (479)
                      +++.++   ++++||.|++|+|
T Consensus        98 v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          98 VKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEESSSEEEEEEESEEEECSC
T ss_pred             EEEEECCCCEEEECCEEEEeeC
Confidence            444333   5799999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.74  E-value=5.7e-18  Score=137.17  Aligned_cols=96  Identities=17%  Similarity=0.264  Sum_probs=88.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||+++|.+++++. +|+++++.+.+.|+++||++++++.+++++..+++.+ .
T Consensus        21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~-~   98 (117)
T d1onfa2          21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNL-S   98 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCE-E
T ss_pred             CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeE-E
Confidence            4899999999999999999999999999999999999975 8999999999999999999999999999997666654 6


Q ss_pred             EEeCCCcEEe-ccEEEEec
Q 011700          241 VNLRDGNRLP-TDMVVVGI  258 (479)
Q Consensus       241 v~~~~g~~i~-~D~Vi~a~  258 (479)
                      +.+++|++++ +|.|++|+
T Consensus        99 v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          99 IHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             EEETTSCEEEEESEEEECC
T ss_pred             EEECCCCEEEeCCEEEEeC
Confidence            8899998875 79999985

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.74  E-value=4.6e-18  Score=158.71  Aligned_cols=152  Identities=24%  Similarity=0.246  Sum_probs=106.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-------------------------------------cCC-HH
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-------------------------------------LFT-PK  205 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------------------~~~-~~  205 (479)
                      .++|||+|+.|+++|..++++|.+|+++++.+.+...                                     ..+ ..
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE  123 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence            5999999999999999999999999999987654110                                     001 01


Q ss_pred             HHHH------------HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh-----
Q 011700          206 IASY------------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-----  268 (479)
Q Consensus       206 ~~~~------------~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~-----  268 (479)
                      ..+.            ..+.+...++..+.+... ++..  +.   .+. .++++++||.|++|+|++|++..+.     
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~d--~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~  196 (261)
T d1mo9a1         124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA-KVID--NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS  196 (261)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCC-EEEE--TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred             HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEE-EEee--ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence            1110            011223333333333322 2221  11   122 3678999999999999999976332     


Q ss_pred             ------ccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          269 ------GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       269 ------~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                            .++.+ ++|+|.||++||||+|+|||+|||+..|.          ++..|..+|+.||.||+|+.
T Consensus       197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~k  257 (261)
T d1mo9a1         197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEK  257 (261)
T ss_dssp             HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCC
T ss_pred             cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCCC
Confidence                  23556 67889999999999999999999998764          46789999999999999864

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.73  E-value=1.8e-17  Score=135.53  Aligned_cols=117  Identities=23%  Similarity=0.346  Sum_probs=98.5

Q ss_pred             CCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHH
Q 011700          136 SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK  215 (479)
Q Consensus       136 ~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~  215 (479)
                      .+.+++|...+      +.+.+...++++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++++.+.+.++
T Consensus         2 ~~~~gv~~~~~------~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~   74 (121)
T d1mo9a2           2 VNAKGVFDHAT------LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMK   74 (121)
T ss_dssp             TTSBTEEEHHH------HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHH
T ss_pred             CCCCCEEeHHH------HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhh
Confidence            45567775443      344455556899999999999999999999999999999999999875 89999999999999


Q ss_pred             hCCcEEEcCCceEEEEEcCCCcEEEEE---eCCCcEEeccEEEEecC
Q 011700          216 SKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       216 ~~GV~i~~~~~v~~i~~~~~g~v~~v~---~~~g~~i~~D~Vi~a~G  259 (479)
                      ++||++++++.+++++.++++++..+.   ..+++++++|.|++|+|
T Consensus        75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999999999999999987777654443   24457899999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.73  E-value=1.8e-17  Score=134.64  Aligned_cols=98  Identities=19%  Similarity=0.346  Sum_probs=89.3

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhC---CCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      .|++++|||+|++|+|+|..|+++   |.+|+++++.+++++. +|+++++.+++.++++||++++++.+++|+.++++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            479999999999999999887654   8899999999999986 899999999999999999999999999998755554


Q ss_pred             EEEEEeCCCcEEeccEEEEecCC
Q 011700          238 VVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                       ..+.+++|++++||.|++|+||
T Consensus        96 -~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 -RHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             -EEEEETTSCEEEESEEEECSCE
T ss_pred             -EEEEECCCCEEEcCEEEEecCC
Confidence             4689999999999999999996

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.72  E-value=1.5e-17  Score=150.93  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=113.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------cCC---
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT---  203 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------~~~---  203 (479)
                      -.++|||+|+.|+++|..+++.|.+|+++++.+.+-..                                    .+.   
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA   83 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence            35999999999999999999999999999987543110                                    000   


Q ss_pred             ---------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE-EEEeCCCcEEeccEEEEecC-----CCCChhhh-
Q 011700          204 ---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV-AVNLRDGNRLPTDMVVVGIG-----IRPNTSLF-  267 (479)
Q Consensus       204 ---------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~-~v~~~~g~~i~~D~Vi~a~G-----~~p~~~l~-  267 (479)
                               ..+.+.+...++..+|+++....  .+..  ..... .....+...+.+|.|++|||     +.|+++.+ 
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~--~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~  159 (221)
T d1dxla1          84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLN  159 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSC
T ss_pred             HHHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc--ccccccccccccccccccceEEEeECCCccCccccCCCCC
Confidence                     11223344556777888876542  2222  11111 11123345789999999998     67888744 


Q ss_pred             --hccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          268 --EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       268 --~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                        +.++.+ ++|+|.||+++|||+|+|||+|||+..+.          ++..|..+|+.||++|+++.
T Consensus       160 l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~~  217 (221)
T d1dxla1         160 LDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGKV  217 (221)
T ss_dssp             CTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTSC
T ss_pred             hHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCC
Confidence              346666 68899999999999999999999998763          47788999999999999865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.72  E-value=5.4e-18  Score=138.82  Aligned_cols=97  Identities=25%  Similarity=0.358  Sum_probs=86.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||+++|++++++. +++++++.+.+.|+++||++++++++.+++..+++....
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            5899999999999999999999999999999999999985 899999999999999999999999999999866665555


Q ss_pred             EEeCCC---cEEeccEEEEec
Q 011700          241 VNLRDG---NRLPTDMVVVGI  258 (479)
Q Consensus       241 v~~~~g---~~i~~D~Vi~a~  258 (479)
                      +...++   +++++|.|++|.
T Consensus       103 ~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2         103 VEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             EEESSSCCCEEEEESEEECCC
T ss_pred             EEECCCCeEEEEEcCEEEEcC
Confidence            655443   358999999873

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.69  E-value=3.3e-17  Score=133.04  Aligned_cols=95  Identities=26%  Similarity=0.412  Sum_probs=83.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++++.+.+.|+++||++++++.+++++.++++... 
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v-   98 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTV-   98 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEE-
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEE-
Confidence            5899999999999999999999999999999999999986 89999999999999999999999999999975554322 


Q ss_pred             EEeCCC--cEEeccEEEEe
Q 011700          241 VNLRDG--NRLPTDMVVVG  257 (479)
Q Consensus       241 v~~~~g--~~i~~D~Vi~a  257 (479)
                      ....+|  +++++|.|+++
T Consensus        99 ~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          99 TYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEETTEEEEEEESEEEEC
T ss_pred             EEEeCCCEEEEEeEEEEEC
Confidence            222344  57999999974

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.68  E-value=2.2e-16  Score=128.01  Aligned_cols=96  Identities=18%  Similarity=0.397  Sum_probs=86.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCC---CeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK  237 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~  237 (479)
                      .|++++|||+|++|+|+|..|..++   .+||++++.+++++. +|+++++.+.+.|+++||++++++++++++.++++.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~   97 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENPAKVELNADGS   97 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence            5899999999999999998887654   579999999999986 899999999999999999999999999999756665


Q ss_pred             EEEEEeCCCcEEeccEEEEec
Q 011700          238 VVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       238 v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                      . .+.++||++++||.|++|+
T Consensus        98 ~-~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          98 K-SVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             E-EEEETTSCEEEESEEEECS
T ss_pred             E-EEEECCCcEEEeCEEEEeC
Confidence            5 5889999999999999985

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=5.2e-18  Score=155.22  Aligned_cols=71  Identities=21%  Similarity=0.276  Sum_probs=57.2

Q ss_pred             cEEEEecCCCCChhhh---hccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHH
Q 011700          252 DMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA  327 (479)
Q Consensus       252 D~Vi~a~G~~p~~~l~---~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~  327 (479)
                      +..+.++|++|+++.+   +.++.+ +.|+|.||+++||+.|+|||+|||+..+.          ++..|..+|+.||++
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~  224 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEM  224 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHH
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHH
Confidence            3445678889988743   235666 67889999999999999999999998763          466789999999999


Q ss_pred             HcCCC
Q 011700          328 IMEPD  332 (479)
Q Consensus       328 i~~~~  332 (479)
                      |++..
T Consensus       225 i~~~~  229 (233)
T d1v59a1         225 LKTGH  229 (233)
T ss_dssp             HHHSC
T ss_pred             HccCC
Confidence            98765

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.67  E-value=2.7e-17  Score=151.33  Aligned_cols=76  Identities=21%  Similarity=0.352  Sum_probs=63.7

Q ss_pred             cEEeccEEEEecCCCCChh-----------hhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccH
Q 011700          247 NRLPTDMVVVGIGIRPNTS-----------LFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV  314 (479)
Q Consensus       247 ~~i~~D~Vi~a~G~~p~~~-----------l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~  314 (479)
                      +.+++|.+++++|.+|...           +.+.++.+ ++|+|.||+++|||+|+|||+|||++.+.          ++
T Consensus       148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~  217 (240)
T d1feca1         148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT  217 (240)
T ss_dssp             EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred             EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence            4689999999999988754           23445666 67899999999999999999999998763          46


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 011700          315 DSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       315 ~~A~~~g~~aa~~i~~~~  332 (479)
                      +.|..+|+.||+++++..
T Consensus       218 ~~A~~eg~~aa~~~~~~~  235 (240)
T d1feca1         218 PVAINEGAAFVDTVFANK  235 (240)
T ss_dssp             HHHHHHHHHHHHHHHSSC
T ss_pred             hhHHHHHHHHHHHHhCCC
Confidence            679999999999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=1e-16  Score=129.57  Aligned_cols=95  Identities=25%  Similarity=0.421  Sum_probs=82.6

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|++||++++.+++++. +++++++.+++.|+++||+++++++|++++   ++....
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~   95 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLA   95 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEE
Confidence            5799999999999999999999999999999999999997 899999999999999999999999999985   333222


Q ss_pred             EE-eCCCcEEeccEEEEecC
Q 011700          241 VN-LRDGNRLPTDMVVVGIG  259 (479)
Q Consensus       241 v~-~~~g~~i~~D~Vi~a~G  259 (479)
                      .. ..+++++++|.|++|+|
T Consensus        96 ~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          96 NDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             ECSSSCCCEECCSCEEECCC
T ss_pred             EEcCCCeEEEEcCEEEEecC
Confidence            22 22335799999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=3.2e-16  Score=143.45  Aligned_cols=158  Identities=19%  Similarity=0.252  Sum_probs=109.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCC---CeEEEEeecCc--------------c---------c---cc----------cCC-
Q 011700          164 NAVVIGGGYIGMECAASLVINK---INVTMVFPEAH--------------C---------M---AR----------LFT-  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g---~~Vtlv~~~~~--------------~---------l---~~----------~~~-  203 (479)
                      +|+|||+|+.|+.+|..+++++   .+|+++++..-              +         +   ..          .++ 
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d~   82 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKISL   82 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceeee
Confidence            6999999999999998776654   67999986420              0         0   00          011 


Q ss_pred             H-----------HHHHHHHHHHHhCCcEEEcCCceEEEEEcC--CCcEEEEEeCCCc--EEeccEEEEecCCCCChhh--
Q 011700          204 P-----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDS--NGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTSL--  266 (479)
Q Consensus       204 ~-----------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~--~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~l--  266 (479)
                      +           .....+.+.++..||+++.+... -+....  ......+...+|+  ++++|.+++++|.+|....  
T Consensus        83 ~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~  161 (233)
T d1xdia1          83 PQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSG  161 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGC
T ss_pred             eeeccccceeeeeeecceehhhcccceeEEECccc-ccccccccccceEEEEecCCceeeeecceeeeecCccccccccc
Confidence            1           11123455677889999877421 111101  1123345566664  6999999999999886532  


Q ss_pred             ----------hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          267 ----------FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       267 ----------~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                                ...++.+ ++|+|.||++||||.|+|||+|||++.+          .+.+.|..+|++||.||+++.
T Consensus       162 ~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~~  228 (233)
T d1xdia1         162 SVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEG  228 (233)
T ss_dssp             EEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCCC
Confidence                      2234555 5688999999999999999999999765          346679999999999999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.9e-16  Score=126.91  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=85.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .|++++|||+|++|+|+|..|+++|.+||+++|++++++. +|+++++.+.+.|+++||++++++++++++.++++....
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence            4799999999999999999999999999999999999986 899999999999999999999999999998865653322


Q ss_pred             -EEeCCCc------EEeccEEEEecC
Q 011700          241 -VNLRDGN------RLPTDMVVVGIG  259 (479)
Q Consensus       241 -v~~~~g~------~i~~D~Vi~a~G  259 (479)
                       +...+|+      .+++|.|++|+|
T Consensus       100 ~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2         100 MVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEEccCCcCcCccccccCCEEEEEeC
Confidence             3333442      478999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=4.9e-16  Score=137.72  Aligned_cols=154  Identities=16%  Similarity=0.223  Sum_probs=119.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc--------------------cccCCHHHHHHHHHHHHhCCcEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------------------ARLFTPKIASYYEEYYKSKGVKF  221 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--------------------~~~~~~~~~~~~~~~l~~~GV~i  221 (479)
                      .++|+|||||+.|+++|..+++.|.+|.++++.....                    .....+++...+.+++++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5789999999999999999999999999998653210                    00124677888888888899999


Q ss_pred             EcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC-----CCChhhhhccccc-ccCcEEEcC-cccCCCCCeEEE
Q 011700          222 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI-----RPNTSLFEGQLTL-EKGGIKVTG-RLQSSNSSVYAV  294 (479)
Q Consensus       222 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~-----~p~~~l~~~~~~~-~~g~i~Vd~-~l~t~~~~IyA~  294 (479)
                      ..+ .|.+++..++.  ..+. .+..+..+|.+++++|.     .|++.+++.++++ ++|+|.+|+ +++|+.|+|||+
T Consensus        85 ~~~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~  160 (192)
T d1vdca1          85 FTE-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA  160 (192)
T ss_dssp             ECC-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred             eee-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence            866 57788753332  2333 44567899999999884     5888888888877 678999995 899999999999


Q ss_pred             eeeccccccccCceeecccHHHHHHHHHHHHHHH
Q 011700          295 GDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  328 (479)
Q Consensus       295 GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  328 (479)
                      |||...+.         ..+..|..+|..||..+
T Consensus       161 GDv~~~~~---------r~~v~A~g~G~~aA~~~  185 (192)
T d1vdca1         161 GDVQDKKY---------RQAITAAGTGCMAALDA  185 (192)
T ss_dssp             GGGGCSSC---------CCHHHHHHHHHHHHHHH
T ss_pred             eecCCccc---------ceEEEEEechHHHHHHH
Confidence            99998654         23566788898888765

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.65  E-value=2.2e-16  Score=144.62  Aligned_cols=55  Identities=22%  Similarity=0.368  Sum_probs=47.1

Q ss_pred             cccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          269 GQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       269 ~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                      .++..++|+|.||++|||++|+|||+|||.+.+.          +.+.|..+|+.||++|+++.+
T Consensus       181 ~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~~A~~eg~~aa~~i~g~~~  235 (238)
T d1aoga1         181 AGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTPVAINEAAALVDTVFGTTP  235 (238)
T ss_dssp             TTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHHHHHHHHHHHHHHHHSSSC
T ss_pred             cEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chhhHHHHHHHHHHHHcCCCC
Confidence            3455678999999999999999999999998753          466799999999999998653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.8e-16  Score=135.81  Aligned_cols=154  Identities=21%  Similarity=0.286  Sum_probs=116.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc---------------cccCCHHHHHHHHHHHHhCCcEEEcCCc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVKGTV  226 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l---------------~~~~~~~~~~~~~~~l~~~GV~i~~~~~  226 (479)
                      .++|+|||||++|+++|..+++.|.+|+++++.+...               ......++.+.+.+.+.+.++++..+ .
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H   83 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence            5789999999999999999999999999998764210               11124677778888888999998866 5


Q ss_pred             eEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC-----ChhhhhcccccccCcEEEcC-----cccCCCCCeEEEee
Q 011700          227 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTSLFEGQLTLEKGGIKVTG-----RLQSSNSSVYAVGD  296 (479)
Q Consensus       227 v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p-----~~~l~~~~~~~~~g~i~Vd~-----~l~t~~~~IyA~GD  296 (479)
                      |+++...++.  ..+.. ....++++.+++++|..|     +..+++..+.+++|+|.+|+     .++||+|+|||+||
T Consensus        84 V~~~~~~~~~--~~v~~-~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaGD  160 (190)
T d1trba1          84 INKVDLQNRP--FRLNG-DNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGD  160 (190)
T ss_dssp             EEEEECSSSS--EEEEE-SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGG
T ss_pred             eEEEecCCCc--EEEEE-eeeeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeEE
Confidence            7887763322  23443 345889999999999665     45556666667889999994     56899999999999


Q ss_pred             eccccccccCceeecccHHHHHHHHHHHHHHH
Q 011700          297 VAAFPLKLLGETRRLEHVDSARKSAKHAVAAI  328 (479)
Q Consensus       297 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i  328 (479)
                      |+..+.         .++..|..+|..||.++
T Consensus       161 v~~~~~---------~q~i~Aag~G~~AA~~a  183 (190)
T d1trba1         161 VMDHIY---------RQAITSAGTGCMAALDA  183 (190)
T ss_dssp             GGCSSS---------CCHHHHHHHHHHHHHHH
T ss_pred             ecCcce---------eEEEEEeccHHHHHHHH
Confidence            987543         34666777888888654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=1.7e-15  Score=137.17  Aligned_cols=153  Identities=22%  Similarity=0.227  Sum_probs=109.0

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc---------------------------c-----c--c-c--cCCH
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---------------------------C-----M--A-R--LFTP  204 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~---------------------------~-----l--~-~--~~~~  204 (479)
                      .-.++|||+|+.|+++|..++++|.+|+++++.+-                           +     .  . .  ..+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            35799999999999999999999999999986420                           0     0  0 0  0000


Q ss_pred             ------------HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh------
Q 011700          205 ------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL------  266 (479)
Q Consensus       205 ------------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l------  266 (479)
                                  .........+++.+++++.+..  .+..  ..    ....++.++.+|.+++|+|.+|....      
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~~  156 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRTK  156 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT----EEEETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc----cccccceeEeeceeeEcCCCCccccccccccc
Confidence                        0111223455667888887642  2221  11    11235568999999999999886521      


Q ss_pred             ----hhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          267 ----FEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       267 ----~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                          ....+.+++++|.||+++|||.|+|||+|||++.++          ++..|..+|+.|+++|+|+.
T Consensus       157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~~  216 (220)
T d1lvla1         157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGKA  216 (220)
T ss_dssp             SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCCC
Confidence                112344468999999999999999999999998764          47788999999999999875

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.63  E-value=7.1e-16  Score=135.03  Aligned_cols=157  Identities=24%  Similarity=0.291  Sum_probs=112.9

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCccccccCCHHHHHH---------HHHHHHhCCcEEEcCCceEEE
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMARLFTPKIASY---------YEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~~~~~~~~~~~---------~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      +||++|||+|+.|+|+|..|++++  .+||++++.+.++.....+.....         ....+...++++..+.. ..+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence            689999999999999999999987  589999999876654322222111         12345567888876643 333


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhc---------ccccccCcEEEcCc-c-cCCCCCeEEEeeecc
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEG---------QLTLEKGGIKVTGR-L-QSSNSSVYAVGDVAA  299 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~---------~~~~~~g~i~Vd~~-l-~t~~~~IyA~GD~~~  299 (479)
                      ..  ...  .+.+.+++++++|.+++|+|.+|++..+..         ++..+.+++.++.. + .++.++||++||++.
T Consensus        81 ~~--~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~  156 (186)
T d1fcda1          81 DP--DKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI  156 (186)
T ss_dssp             CT--TTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred             ee--ccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence            22  222  466788999999999999999999875532         22234566666653 3 358999999999986


Q ss_pred             ccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          300 FPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       300 ~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ....       ...+..|..||+.+|+||..
T Consensus       157 ~~~~-------p~~~~~A~~q~~~~A~ni~~  180 (186)
T d1fcda1         157 ANPM-------PKSGYSANSQGKVAAAAVVV  180 (186)
T ss_dssp             CTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-------CchHhHHHHHHHHHHHHHHH
Confidence            5432       15678899999999999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.61  E-value=1.9e-15  Score=137.80  Aligned_cols=158  Identities=18%  Similarity=0.232  Sum_probs=101.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----------------------------------cCC-----
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-----  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----------------------------------~~~-----  203 (479)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+-..                                   .+.     
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~   87 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR   87 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence            4899999999999999999999999999976543100                                   001     


Q ss_pred             -------HHHHHHHHHHHHhCCcEEEcCCceEEE--------EEcCCCcEEEEEeCCCcEEeccEEEEecC-CCCChhh-
Q 011700          204 -------PKIASYYEEYYKSKGVKFVKGTVLSSF--------DVDSNGKVVAVNLRDGNRLPTDMVVVGIG-IRPNTSL-  266 (479)
Q Consensus       204 -------~~~~~~~~~~l~~~GV~i~~~~~v~~i--------~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G-~~p~~~l-  266 (479)
                             ..+...+........++++.+.....-        ........ .......+...++.++++.| +.|++.. 
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  166 (229)
T d1ojta1          88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQ-AAPTGEKKIVAFKNCIIAAGSRAPNGKLI  166 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTE-EEEEEEEEEEEEEEEEECCCEEEECGGGT
T ss_pred             HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCccccccccccccccc-ccccccccceecceEEEEecccCCccccc
Confidence                   111222333455667777654321110        00000000 00011112455556666655 5565542 


Q ss_pred             --hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCC
Q 011700          267 --FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       267 --~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                        .+.++.+ ++|+|.||++||||+|+|||+|||++.+.          ++..|..+|+.||.+|++..
T Consensus       167 ~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~~  225 (229)
T d1ojta1         167 SAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGHK  225 (229)
T ss_dssp             TGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCC
T ss_pred             chhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCCC
Confidence              2345666 68899999999999999999999998763          46678999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=3.8e-15  Score=121.22  Aligned_cols=97  Identities=22%  Similarity=0.393  Sum_probs=81.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC--cE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KV  238 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g--~v  238 (479)
                      .|++++|||+|++|+|+|..|+++|.+||++.++ ++++. +|+++++.+.+.|+++||+|++++.+++++..+++  ..
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~   96 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR   96 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence            5899999999999999999999999999999875 67775 89999999999999999999999999999764332  12


Q ss_pred             EEEEeCCC-----cEEeccEEEEecC
Q 011700          239 VAVNLRDG-----NRLPTDMVVVGIG  259 (479)
Q Consensus       239 ~~v~~~~g-----~~i~~D~Vi~a~G  259 (479)
                      ..+.+.++     ..+++|.|++|+|
T Consensus        97 ~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          97 LKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEECCCCcEEEEECCEEEEEeC
Confidence            23444332     2467999999998

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.57  E-value=2e-15  Score=137.08  Aligned_cols=155  Identities=24%  Similarity=0.283  Sum_probs=109.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc------------------------------------------c
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------L  201 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------~  201 (479)
                      .++|||+|+.|+.+|..+++.|.+|.++++.......                                          .
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~   84 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEVA   84 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCCE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcce
Confidence            4899999999999999999999999999864211000                                          0


Q ss_pred             CC------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChh--
Q 011700          202 FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--  265 (479)
Q Consensus       202 ~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~--  265 (479)
                      ++            ..+...+...++..||+++.+.....     +.........+.  .++.++.+++++|.+|...  
T Consensus        85 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~  159 (229)
T d3lada1          85 IDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLL-----AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPR  159 (229)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEEC-----STTCEEEECTTSCEEEECCSCEEECCCEEECCCTE
T ss_pred             eecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccc-----ccceeeccccCccceeeecccccccCCcccccccc
Confidence            00            11223345556778899887643211     111122333332  4678999999999877543  


Q ss_pred             -------h-hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          266 -------L-FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       266 -------l-~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                             + .+.++.+ ++|+|.||+++|||+|+|||+|||+..+.          +...|..+|+.||++|++...
T Consensus       160 ~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~~  226 (229)
T d3lada1         160 RPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKA  226 (229)
T ss_dssp             EECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCC
T ss_pred             cccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCCC
Confidence                   1 2234555 67899999999999999999999987653          466789999999999998753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.55  E-value=1.2e-18  Score=159.86  Aligned_cols=170  Identities=12%  Similarity=0.040  Sum_probs=96.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +.++|+||||||||++||.+|+++|++   |+|+|+++.....       +.........+.+..     ........+.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~~GG~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~  112 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQVAALPGLGEWSY-----HRDYRETQIT  112 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHHTTSTTCGGGGH-----HHHHHHHHHH
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc---eeeEeeccccCCc-------cccccccceeecccc-----cchhHHHHHH
Confidence            358999999999999999999999987   9999998753211       100000011111100     0001111122


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +.......    ..++...+.+...+..++.||++|+|||+.+..|...   +.+....+..+.......     ....+
T Consensus       113 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~  180 (233)
T d1djqa3         113 KLLKKNKE----SQLALGQKPMTADDVLQYGADKVIIATGASECTLWNE---LKARESEWAENDIKGIYL-----IGDAE  180 (233)
T ss_dssp             HHHTTCTT----CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHH---HHHTTHHHHHTTCCEEEE-----CGGGT
T ss_pred             HHhhccee----eeeecccccccchhhhhhccceeeeccCCCccccccc---ccccccccchhhhhhhhh-----ccccC
Confidence            11111100    1122223333333334578999999999987766542   111111111111000000     00136


Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      ++++|+|+|++|+|+|..|.+.|.+|++++|.+.++.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~  217 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW  217 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence            8899999999999999999999999999999887643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.50  E-value=8.9e-15  Score=124.88  Aligned_cols=134  Identities=14%  Similarity=0.042  Sum_probs=96.9

Q ss_pred             ecCCCcccc-cccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEE--CCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          120 ATGARALKL-EEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVI--GGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       120 AtG~~~~~~-~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVI--GgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      |||+.|..| |+   ||.+..+.+.+ +.+++..    .+..++++++|+  |+|++|+|+|..|+++|++||++++.++
T Consensus         4 atG~~~~~~~pi---pG~~~~~~~v~-t~~d~l~----~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2           4 TDGTNCLTHDPI---PGADASLPDQL-TPEQVMD----GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             SSCCCTTTSSCC---TTCCTTSTTEE-CHHHHHH----TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCCCCCCC---CCccCCCCEEE-CHHHHhc----CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            899999877 55   66665443333 3334322    222234445554  9999999999999999999999999998


Q ss_pred             cccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700          197 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       197 ~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                      +++. ++++....+.+.|+++||++++++.+.+|+.  ++    +.+.+......+.++.++|..|+....+
T Consensus        76 ~~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~~  140 (156)
T d1djqa2          76 ANYM-HFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANTS  140 (156)
T ss_dssp             TTHH-HHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred             cccc-cchhHHHHHHHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCCc
Confidence            8876 6778888999999999999999999999975  22    3333333445567777777777766543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.49  E-value=5e-18  Score=158.29  Aligned_cols=34  Identities=15%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ||++||||||||++||.+++++|.+   |+|||++..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~---V~liE~~~~   35 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRL   35 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence            8999999999999999999999998   999998753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=4.7e-16  Score=134.90  Aligned_cols=122  Identities=20%  Similarity=0.277  Sum_probs=83.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ++++|+|||||||||+||..|+++|++   |+|+|+.+.....       +...   ..+|.....  ......+.++++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~~~GG~-------l~~~---~~~p~~~~~--~~~~~~~~~~~~  106 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-------FNIA---KQIPGKEEF--YETLRYYRRMIE  106 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-------HHHH---TTSTTCTTH--HHHHHHHHHHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccCccCce-------EEEE---EeCcccchH--HHHHHHHHHhhh
Confidence            468999999999999999999999987   9999998753210       1100   011211100  011123455667


Q ss_pred             HcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCC
Q 011700           83 EHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSG  162 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~  162 (479)
                      +.|+++++++.|+.   +         ....||.+|+|||+.|+.++.   |+.+                       .+
T Consensus       107 ~~gV~i~l~~~Vt~---~---------~~~~~d~vilAtG~~~~~~~~---pg~~-----------------------~g  148 (179)
T d1ps9a3         107 VTGVTLKLNHTVTA---D---------QLQAFDETILASGIPNRALAQ---PLID-----------------------SG  148 (179)
T ss_dssp             HHTCEEEESCCCCS---S---------SSCCSSEEEECCCEECCTTHH---HHHT-----------------------TT
T ss_pred             cCCeEEEeCCEEcc---c---------ccccceeEEEeecCCCccccc---chhc-----------------------cC
Confidence            78999999976641   1         124799999999998877665   3211                       37


Q ss_pred             CCEEEECCChHHHHH
Q 011700          163 GNAVVIGGGYIGMEC  177 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~  177 (479)
                      ++++|+|+|..++++
T Consensus       149 ~~v~vigggd~a~~~  163 (179)
T d1ps9a3         149 KTVHLIGGCDVAMEL  163 (179)
T ss_dssp             CCEEECGGGTCCSSC
T ss_pred             CEEEEECCcHhhhhc
Confidence            899999999888775

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.6e-13  Score=117.80  Aligned_cols=157  Identities=15%  Similarity=0.227  Sum_probs=117.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc--cc-----------cccCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~--~l-----------~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .|+|||||++|+++|..++++|.+|++++++..  +.           +....+.+.+.+....++.+++......+..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            489999999999999999999999999986421  11           11123677777888888899999988888887


Q ss_pred             EEcCCC-cEEEEEeCCCcEEeccEEEEecCCCCChh-hhhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCc
Q 011700          231 DVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTS-LFEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGE  307 (479)
Q Consensus       231 ~~~~~g-~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~-l~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~  307 (479)
                      ...... ........+..++.++.++.++|..++.. +....+.. ..|.|.||+.++|+.|+||++|||...+.     
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~-----  157 (184)
T d1fl2a1          83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY-----  157 (184)
T ss_dssp             ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred             cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence            653332 23345556777899999999999765544 33334444 57889999999999999999999998653     


Q ss_pred             eeecccHHHHHHHHHHHHHHHc
Q 011700          308 TRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       308 ~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                          .....|..+|..||..+.
T Consensus       158 ----~~~vva~g~G~~aA~~~~  175 (184)
T d1fl2a1         158 ----KQIIIATGEGAKASLSAF  175 (184)
T ss_dssp             ----CCHHHHHHHHHHHHHHHH
T ss_pred             ----CCcEEEEECcHHHHHHHH
Confidence                234556677777776543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.47  E-value=8e-13  Score=121.93  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCC-cEEEEEeCCCcEEeccEEEEecCCCCChh---------hhhc-cc
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGIRPNTS---------LFEG-QL  271 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~---------l~~~-~~  271 (479)
                      ..++.+.+.+.+++.||+++++++|++++..+++ .+..+...+++++.||.||+|+|-.+...         +++. ++
T Consensus       108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            5678888889999999999999999999875544 33334556778999999999999654332         2211 11


Q ss_pred             cc------ccCcEE---Ec-CcccC-CCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          272 TL------EKGGIK---VT-GRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       272 ~~------~~g~i~---Vd-~~l~t-~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ..      ..|++.   +| ..|+. .+|++|.+|.+........|     -..+.|...|..|++.|..
T Consensus       188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a~~s~~~~~~~~~~  252 (253)
T d2gqfa1         188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWAWSSAYACALSISR  252 (253)
T ss_dssp             CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----EehhhhHhHHHHHHHHHhc
Confidence            11      234444   33 34666 68999999977764332212     1234567788888887753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.2e-17  Score=146.97  Aligned_cols=176  Identities=16%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCCC-------CCCCCCCcccccC--
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLPE-------APARLPSFHTCVG--   70 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~~-------~~~~~~~~~~~~~--   70 (479)
                      ++||||||||||||++||.+|+++|.+   |+|||+++...  .++.+. ++.+....       ......++.....  
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~k---V~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~   77 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF   77 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence            479999999999999999999999988   99999975310  000111 11100000       0000000000000  


Q ss_pred             -------------CcccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCC
Q 011700           71 -------------ANEERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSD  137 (479)
Q Consensus        71 -------------~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~  137 (479)
                                   .........++++.+|++..+..... .  ...+ ..+++.+.++++++|||+.|..|++|+.++..
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~-~--~~~~-~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~  153 (217)
T d1gesa1          78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFV-D--AKTL-EVNGETITADHILIATGGRPSHPREPANDNIN  153 (217)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEE-E--TTEE-EETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccc-e--eeee-cCCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence                         00001123346678999887754332 1  2222 23667899999999999999998885444321


Q ss_pred             C--CCeEEecC-HHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEE
Q 011700          138 A--ENVCYLRD-LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVT  189 (479)
Q Consensus       138 ~--~~v~~~~~-~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vt  189 (479)
                      .  .++.+... ....+    ...+..++++.+||+|.+|+|+|..+.+.|.+|+
T Consensus       154 l~~~gv~~~~~~~i~~d----~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         154 LEAAGVKTNEKGYIVVD----KYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             HHHHTCCBCTTSCBCCC----TTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccEEEcCCccEeeC----chhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            0  11111000 00000    0111246789999999999999999999988875

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.7e-14  Score=118.75  Aligned_cols=108  Identities=14%  Similarity=0.066  Sum_probs=85.8

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEEE-----------cc----------CCCCceE-EEEc--cCCEEEEEEEeCCC
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVHY-----------GN----------FSGTTFG-AYWV--NKGRLVGSFLEGGT  392 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~-----------~~----------~~~~~~~-~~~~--~~~~i~G~~~~g~~  392 (479)
                      |+.+|+  ..+.+.+++.+|+++.++...           ..          .....+. ++..  ++++|||+|++|++
T Consensus         1 Y~~VP~--~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~   78 (133)
T d1h6va3           1 YDNVPT--TVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN   78 (133)
T ss_dssp             CSSCCE--EECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred             CCCCCE--EecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence            567886  445677899999987544211           00          0012222 2222  58999999999999


Q ss_pred             HHHHH-HHHHHHHcCCCcCcHHHHhhcCCCcccccCCCCCCCCCCCCCccccccc
Q 011700          393 KEEYE-AIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVPGLVL  446 (479)
Q Consensus       393 ~~e~~-~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  446 (479)
                      |+|++ .++.||++++|++||.+++..||+++|.+..+..+++|+.|.++++||+
T Consensus        79 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~l~~~~~s~~~~~~~~cc~  133 (133)
T d1h6va3          79 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCCG  133 (133)
T ss_dssp             HHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCCCBGGGCCCCCCCSCCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHhhhhhhccCCccccCCCC
Confidence            99984 5899999999999999999999999999999999999999999999996

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.41  E-value=1.1e-12  Score=120.47  Aligned_cols=120  Identities=23%  Similarity=0.242  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh---------hhhc-cccc
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---------LFEG-QLTL  273 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~---------l~~~-~~~~  273 (479)
                      .++.+.+.+.+++.||+++.+++|++++. +++.+..+.+++++++.+|.||+|+|-.....         +++. +...
T Consensus       110 ~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~  188 (251)
T d2i0za1         110 QSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  188 (251)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceeee
Confidence            56777888889999999999999999987 46777788999999999999999999654322         2221 1111


Q ss_pred             ---ccCcE-----EEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          274 ---EKGGI-----KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       274 ---~~g~i-----~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                         ....+     ..++...+..|++|++|++........|     .....|...|+.++..+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~  247 (251)
T d2i0za1         189 TELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAG  247 (251)
T ss_dssp             EEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHH
Confidence               01111     1122223478999999999865432222     234567778888887764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.8e-12  Score=116.46  Aligned_cols=151  Identities=20%  Similarity=0.273  Sum_probs=109.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc----------------------------cc--------cCC-H--
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------AR--------LFT-P--  204 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l----------------------------~~--------~~~-~--  204 (479)
                      .++|||+|+.|+++|..++++|.+|+++++.+ +-                            ..        .++ +  
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            38999999999999999999999999998753 10                            00        001 0  


Q ss_pred             ---------HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh---------h
Q 011700          205 ---------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS---------L  266 (479)
Q Consensus       205 ---------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~---------l  266 (479)
                               .+...++..+++.||++.........    ..    ....+++.+.++.+++++|.+|...         +
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~----~~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l  154 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD----AK----TLEVNGETITADHILIATGGRPSHPREPANDNINL  154 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE----TT----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce----ee----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence                     12223445567789988876543222    11    1224667899999999999776543         1


Q ss_pred             hhccccc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcCCCC
Q 011700          267 FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK  333 (479)
Q Consensus       267 ~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~~~~  333 (479)
                      ...++.. +++.+.+|++++|+.|+||++||+....          +.++.+..+|+.++.++++..+
T Consensus       155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p  212 (217)
T d1gesa1         155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP  212 (217)
T ss_dssp             HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred             ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence            2234555 6788999999999999999999998765          4577889999999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.25  E-value=9.3e-12  Score=106.81  Aligned_cols=106  Identities=30%  Similarity=0.442  Sum_probs=78.8

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG   85 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (479)
                      +|||||||++|+.+|..|++ +.+   |+|+++++.+.|.++.++..+....     +.      ........+++.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~---Vtvv~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~   66 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYE---VTVIDKEPVPYYSKPMLSHYIAGFI-----PR------NRLFPYSLDWYRKRG   66 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSE---EEEECSSSSCCCCSTTHHHHHTTSS-----CG------GGGCSSCHHHHHHHT
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCC---EEEEeccccccccccchhhhhhhhh-----hh------hhhhHHHHHHHHhcc
Confidence            79999999999999999976 444   9999999876666555443221110     00      112245577888899


Q ss_pred             cEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccc
Q 011700           86 IELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALK  127 (479)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~  127 (479)
                      ++++.++.+..++...+.+.. ++.++.||.+|+|+|..|..
T Consensus        67 v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~~  107 (167)
T d1xhca1          67 IEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNVD  107 (167)
T ss_dssp             EEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECCH
T ss_pred             ceeeeeccccccccccccccc-cccccccceeEEEEEecCCc
Confidence            999999999999987776655 55679999999999987653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.23  E-value=1e-11  Score=108.40  Aligned_cols=109  Identities=27%  Similarity=0.476  Sum_probs=84.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+|+|||||++|+.+|..|+++|.+ ..|++++++...+|.++.++..+.......              ......+...
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~-v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~   68 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDAE--------------KIRLDCKRAP   68 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCC-SCEEEEESSCSCCBCSGGGGTTHHHHCCGG--------------GSBCCGGGST
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCc-eEEEEEecccccchhhHHHhhhhhhhhhhh--------------hHHHHHhhcC
Confidence            5799999999999999999998864 467888888777777766654332111100              1112234466


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKL  128 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~  128 (479)
                      +++++.++++..++.+...+.+.+|+++.||.+|+|+|..|...
T Consensus        69 ~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~  112 (183)
T d1d7ya1          69 EVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAV  112 (183)
T ss_dssp             TCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCE
T ss_pred             CeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccc
Confidence            89999999999999999999999999999999999999988643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.20  E-value=9.4e-11  Score=111.70  Aligned_cols=57  Identities=19%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIG  259 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G  259 (479)
                      ...+.+.+.+.+.++|++++++++++++..++++++..+...+  +  ..+.++.||+|+|
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            4567778888888999999999999999876778877776543  3  2589999999998

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.19  E-value=3.4e-11  Score=106.40  Aligned_cols=111  Identities=14%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHcC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEHG   85 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (479)
                      +|||||||++|+.+|.+|++++. ..+|+++++++...|..+.++. ++.. .....        ........+.+++.|
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~-~~~~~--------~~~~~~~~~~l~~~g   70 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEG-KVKDV--------NSVRYMTGEKMESRG   70 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTT-SSCCG--------GGSBSCCHHHHHHTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhcc-cccch--------HHHHHhhHHHHHHCC
Confidence            79999999999999999999754 4579999998876665444331 1111 11000        111234567888999


Q ss_pred             cEEEeCceEEEEECCCcEEEeC---CC--cEEEeceEEeecCCCccc
Q 011700           86 IELVLGTRVKSADVRRKTLVTA---TG--ETISYKILIIATGARALK  127 (479)
Q Consensus        86 v~~~~~~~v~~i~~~~~~v~~~---~g--~~~~~d~lviAtG~~~~~  127 (479)
                      ++++.++.|.+++.+++.+++.   +|  .++.||.+|+|+|+.|..
T Consensus        71 i~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          71 VNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             CEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             cEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence            9999999999999999887653   33  357999999999987653

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.2e-10  Score=92.94  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+|+|+|||+|.+|+|.|..|++.+.+||+++|++.+.   .++.+.+.+.+..+..+|.++.++.+.++.. ++..+..
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G-~~~~v~~  101 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTG  101 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSEEEECSCEEEEEEE-CSSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccceeEecceEEEEEEC-CCCceEE
Confidence            68999999999999999999999999999999998753   4788888888888889999999999999998 4555778


Q ss_pred             EEeCCC------cEEeccEEEEecC
Q 011700          241 VNLRDG------NRLPTDMVVVGIG  259 (479)
Q Consensus       241 v~~~~g------~~i~~D~Vi~a~G  259 (479)
                      +++.|.      +++++|-|++++|
T Consensus       102 v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2         102 VRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EEEEECCCCceEEEEECCEEEEEeC
Confidence            887653      3699999999987

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.16  E-value=2.6e-10  Score=107.78  Aligned_cols=61  Identities=13%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC--C--cEEeccEEEEecC-CCCCh
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIG-IRPNT  264 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~Vi~a~G-~~p~~  264 (479)
                      ..+...+.+.+++.|++++.++.++++..+++|++..+...+  +  .++.++.||+|+| +..|.
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~  210 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNN  210 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCH
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccH
Confidence            456667777888899999999999998876778888887653  3  2588999999999 44443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2e-11  Score=104.27  Aligned_cols=122  Identities=24%  Similarity=0.256  Sum_probs=86.3

Q ss_pred             cccccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCe-----------------
Q 011700          125 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKIN-----------------  187 (479)
Q Consensus       125 ~~~~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~-----------------  187 (479)
                      |+.|++   ||.+.++|++..++     +..  ....+++++|||||++|+|+|..+.+.|.+                 
T Consensus         2 Pr~p~I---pG~d~~~V~~a~d~-----L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~   71 (162)
T d1ps9a2           2 PRTPPI---DGIDHPKVLSYLDV-----LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSS   71 (162)
T ss_dssp             ECCCCC---BTTTSTTEEEHHHH-----HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTT
T ss_pred             CCCCCC---CCCCCCCeEEHHHH-----hhC--ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcc
Confidence            666776   88888999874322     111  112579999999999999999999988754                 


Q ss_pred             --------------------EEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC-
Q 011700          188 --------------------VTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-  246 (479)
Q Consensus       188 --------------------Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g-  246 (479)
                                          ++++......+...++..........++..||++++++.+.+++.  +|..  +...+. 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~~g~e  147 (162)
T d1ps9a2          72 LQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVINGET  147 (162)
T ss_dssp             CCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEETTEE
T ss_pred             hhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--EecCCeE
Confidence                                344443333333335566667778889999999999999999963  4432  232222 


Q ss_pred             cEEeccEEEEecCC
Q 011700          247 NRLPTDMVVVGIGI  260 (479)
Q Consensus       247 ~~i~~D~Vi~a~G~  260 (479)
                      ++++||.|++|+|.
T Consensus       148 ~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         148 QVLAVDNVVICAGQ  161 (162)
T ss_dssp             EEECCSEEEECCCE
T ss_pred             EEEECCEEEECCCC
Confidence            35899999999995

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.16  E-value=2.7e-11  Score=105.06  Aligned_cols=111  Identities=21%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      ++|||||||++|+.+|.+|++++. +.+|++||+++.+  ..+.+..........           ..........+...
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~--~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~   68 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDY--YTCYLSNEVIGGDRK-----------LESIKHGYDGLRAH   68 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCE--ECSTTHHHHHHTSSC-----------GGGGEECSHHHHTT
T ss_pred             CcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcc--ccccccccccchhhh-----------hhhhhhhhhhcccc
Confidence            689999999999999999999874 5679999998642  112211111100000           00112233455667


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE  130 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~  130 (479)
                      ++++..+ .+..++...+.+.+.++++++||+||+|||.+|..+.+
T Consensus        69 ~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i  113 (186)
T d1fcda1          69 GIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKI  113 (186)
T ss_dssp             TEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTS
T ss_pred             ceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccchhhh
Confidence            8888876 67778888889999999999999999999998876544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=8.4e-11  Score=94.19  Aligned_cols=93  Identities=19%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..|+++|.+   |+|+++.+...                   |.+.    ........+.+++
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~~l-------------------~~~d----~~~~~~~~~~l~~   74 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL-------------------PSFD----PMISETLVEVMNA   74 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHhhccccE---EEEEeecchhh-------------------hhcc----hhhHHHHHHHHHH
Confidence            36899999999999999999999986   99999986410                   1110    1112445677888


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG  122 (479)
                      .||+++.++.+..+..+.   .++.+.+|+++.+|.||+|||
T Consensus        75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            999999999999887553   367788999999999999998

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.12  E-value=1.3e-10  Score=93.76  Aligned_cols=92  Identities=20%  Similarity=0.332  Sum_probs=72.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|+++|.+   |+++++.+.....               .++       ........+.+++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~~l~~---------------~~~-------~~~~~~~~~~l~~   84 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSR---------------AAP-------ATLADFVARYHAA   84 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT---------------TSC-------HHHHHHHHHHHHT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccce---EEEEeeccccccc---------------cCC-------HHHHHHHHHHHHH
Confidence            47899999999999999999999877   9999998642100               001       1112345677888


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG  122 (479)
                      +||+++.++.+.++..  ..+.+.+|+++++|.+|+|+|
T Consensus        85 ~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          85 QGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             TTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred             CCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence            9999999999988764  468889999999999999998

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.12  E-value=4.5e-11  Score=111.08  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=35.2

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |.++|||||||||++|+++|++|+++|.+   |+|||++..
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~---V~vlE~~~~   38 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM   38 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence            77789999999999999999999999987   999999863

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.2e-10  Score=92.86  Aligned_cols=118  Identities=23%  Similarity=0.275  Sum_probs=85.3

Q ss_pred             ccccCCCCCCCCCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHH
Q 011700          128 LEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIA  207 (479)
Q Consensus       128 ~~~~g~~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~  207 (479)
                      ++++|.......+++++..++ ...       +.+|+|+|||+|.+|+|.|..|++...+||+++|++.+..   ++.+.
T Consensus         4 L~ipge~~~~gkGV~yca~cD-~~~-------~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~   72 (126)
T d1fl2a2           4 MNVPGEDQYRTKGVTYCPHCD-GPL-------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQ   72 (126)
T ss_dssp             CCCTTTTTTBTTTEESCHHHH-GGG-------GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHH
T ss_pred             CCCCCHHHhcCCCEEEEEecC-hhh-------cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---ccccc
Confidence            444333333346777755432 221       3689999999999999999999999999999999987533   44443


Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---C--cEEeccEEEEecCC
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGI  260 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~Vi~a~G~  260 (479)
                      +.+   .+..+|++++++++.++.. ++..+..+++.|   |  +++++|.+++++|.
T Consensus        73 ~~~---~~~~~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          73 DKL---RSLKNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HHH---HTCTTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ccc---ccccceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            322   2345699999999999997 345677777754   3  36999999999983

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.11  E-value=4.4e-11  Score=112.51  Aligned_cols=126  Identities=19%  Similarity=0.201  Sum_probs=80.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CC-CcccccccCCCCCCCCCCcc-----------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPY----ER-PALSKGYLLPEAPARLPSFH-----------   66 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~----~~-~~l~~~~~~~~~~~~~~~~~-----------   66 (479)
                      ++.||+|||||++||++|.+|++.|++   ++|+|+.+....    ++ |...  +-.+......+...           
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~~iGGtW~~n~ypg~~--~d~~~~~~~~s~~~~~~~~~~~~~~   80 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGAR--CDIESIEYCYSFSEEVLQEWNWTER   80 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCB--CSSCTTTSSCCSCHHHHHHCCCCBS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCCCcccccccCCCCCce--eccccccccccccccccCCCCCccc
Confidence            357999999999999999999999986   999999865210    11 0000  00000000000000           


Q ss_pred             cccCCcccCCCHhHHHHcCc--EEEeCceEEEEEC--CC--cEEEeCCCcEEEeceEEeecC--CCcccccccCC
Q 011700           67 TCVGANEERLTPKWYNEHGI--ELVLGTRVKSADV--RR--KTLVTATGETISYKILIIATG--ARALKLEEFGL  133 (479)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~--~~--~~v~~~~g~~~~~d~lviAtG--~~~~~~~~~g~  133 (479)
                      .........++..+.+++++  .+..+++|+++..  +.  ..|.+.++.++++|.||+|||  +.|..|.++++
T Consensus        81 ~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~  155 (298)
T d1w4xa1          81 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKI  155 (298)
T ss_dssp             SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTS
T ss_pred             cCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccccc
Confidence            00111122334555667787  5888999999863  22  368888889999999999999  56777766433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.10  E-value=1.5e-10  Score=95.03  Aligned_cols=94  Identities=17%  Similarity=0.274  Sum_probs=72.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|+++|.+   |+++|+.+.. +.+              .++       ........+.+++
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~~-l~~--------------~~~-------~~~~~~~~~~~~~   89 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAARV-LER--------------VTA-------PPVSAFYEHLHRE   89 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSST-TTT--------------TSC-------HHHHHHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcc---eeeeeecccc-ccc--------------ccc-------hhhhhhhhhcccc
Confidence            57899999999999999999999887   9999998641 100              000       1111344567789


Q ss_pred             cCcEEEeCceEEEEECCC-----cEEEeCCCcEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRR-----KTLVTATGETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~-----~~v~~~~g~~~~~d~lviAtG  122 (479)
                      +||+++.++.+..++...     ..+.+.+|+++++|.+|+|+|
T Consensus        90 ~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          90 AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            999999999999887543     246788999999999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.08  E-value=6.7e-10  Score=103.31  Aligned_cols=58  Identities=21%  Similarity=0.422  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      +..+...+.+.+++.|++++.+++|.+++.. ++.+ .|.+.+| ++.||.||+|+|...+
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~V~t~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDSV-KIETANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSCE-EEEETTE-EEEEEEEEECCGGGHH
T ss_pred             ccccccccccccccccccccCCcEEEEEEEE-CCEE-EEEECCc-EEEcCEEEECCCCcch
Confidence            4567778888899999999999999999984 4444 5777777 6999999999996543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=1e-09  Score=104.15  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeC--CCc--EEeccEEEEecCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~--~g~--~i~~D~Vi~a~G~  260 (479)
                      +++.+.+.+.+++.|+++++++.+.++..++++++..+...  +++  .+.++.||+|+|-
T Consensus       148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  208 (317)
T d1qo8a2         148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGG  208 (317)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCC
T ss_pred             hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccc
Confidence            56778888889999999999999999877678888777654  333  5789999999993

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.05  E-value=3e-11  Score=113.45  Aligned_cols=109  Identities=12%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC--cEEeccEEEEecCCCCChhhhhcc-------c-cc-ccCc
Q 011700          209 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLFEGQ-------L-TL-EKGG  277 (479)
Q Consensus       209 ~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~Vi~a~G~~p~~~l~~~~-------~-~~-~~g~  277 (479)
                      .+.+..++.|++++++++|++|+.++++ +..+...++  ++++||.||+|+|......++...       + .. ..+.
T Consensus       224 ~~~~l~~~~g~~i~~~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~  302 (347)
T d2ivda1         224 LIDALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGH  302 (347)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTH
T ss_pred             HHHHHHHHhhcccccCCEEEEEEEeCCe-EEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCc
Confidence            3344445568999999999999874444 322233343  468999999999854333333210       0 00 1111


Q ss_pred             ---EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          278 ---IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       278 ---i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                         +...+...++.|++|++||.....           .+..++.+|+.+|+.|.
T Consensus       303 ~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         303 LERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             HHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred             ccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence               111222346899999999986642           25568889999998875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.4e-10  Score=101.68  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=72.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (479)
                      +++||+||||||+||+||.+|+|.|.+   |+|||+.+...        .+........++.+... .+...........
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~~~g--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   72 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEHA   72 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeecccc--------cccccchhhhhhccccccchHHHHHHHHHHH
Confidence            468999999999999999999999998   79999875311        11111112222222111 1111112234455


Q ss_pred             HHcCcEEEeCceEEEEECCCcEEE-eCCCcEEEeceEEeecCCCcc
Q 011700           82 NEHGIELVLGTRVKSADVRRKTLV-TATGETISYKILIIATGARAL  126 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v~-~~~g~~~~~d~lviAtG~~~~  126 (479)
                      .+.++++..+ .|+.++....... ......+..+.+++|+|..++
T Consensus        73 ~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          73 TKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             HHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             HhcCcEEecc-eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            6788988876 6888887655322 234567899999999998765

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.01  E-value=3.5e-10  Score=90.36  Aligned_cols=93  Identities=19%  Similarity=0.309  Sum_probs=70.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..|+++|.+   |+++++.+..                   +|.+.    .+......+.+++
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~i-------------------l~~~d----~~~~~~l~~~l~~   74 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERI-------------------LPTYD----SELTAPVAESLKK   74 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSS-------------------STTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeeccc-------------------ccccc----chhHHHHHHHHHh
Confidence            46899999999999999999999986   9999998641                   01110    1112345677888


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCC--cEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATG--ETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG  122 (479)
                      +|++++.+++|.+++.....+...++  +++.+|.+++|||
T Consensus        75 ~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          75 LGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            99999999999999754443333333  5799999999998

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.00  E-value=2.2e-09  Score=102.47  Aligned_cols=124  Identities=13%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCCCCCh------------h-
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPNT------------S-  265 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~~------------~-  265 (479)
                      ..+...+.+..++.||+++.++.+.++.. +++++..+..   .+|+  ++.++.||+|||--...            + 
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg  236 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTG  236 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHH
T ss_pred             HHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchh
Confidence            45566667777889999999999988876 5666655544   4564  57899999999833211            0 


Q ss_pred             ---hhhccc-cc-ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          266 ---LFEGQL-TL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       266 ---l~~~~~-~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                         .+..+. .. +.++|.+|+..+|+.|++|++||+........ .+..-..+..+...+..++++++
T Consensus       237 ~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~-~~~~~~~~~e~~~~~~~~ge~~~  304 (336)
T d2bs2a2         237 TAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGF-NRLGGNSVSEAVVAGMIVGEYFA  304 (336)
T ss_dssp             HHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTT-CCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccceeechhhcccCCcceecccccccccccc-ccchhhccchhhhhcchhHHHHH
Confidence               112232 23 56789999999999999999999876432100 00001234445555555555544

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=92.79  Aligned_cols=91  Identities=12%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEE-------------Ecc-------CCCCceEEEEc--cCCEEEEEEEeCCCHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVH-------------YGN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKE  394 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~-------------~~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~  394 (479)
                      |+.+|+  ..+.+.+++.+|+++.++..             +..       .+...|.++.+  ++++|+|+|++|++|+
T Consensus         1 Y~~vP~--~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~   78 (115)
T d3grsa3           1 YNNIPT--VVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD   78 (115)
T ss_dssp             CTTCCE--EECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCE--EecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence            567886  44567789999998754311             110       01234655544  6899999999999999


Q ss_pred             HH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          395 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       395 e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      |+ +.++.||++++|++|+.+++..||+++|.+.++
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~l  114 (115)
T d3grsa3          79 EMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVTL  114 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred             HHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHhc
Confidence            98 558999999999999999999999999988653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.1e-10  Score=108.90  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=68.3

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh---------hhccccc--ccCc-
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL---------FEGQLTL--EKGG-  277 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l---------~~~~~~~--~~g~-  277 (479)
                      ..+.+++.|++++++++|.+|+.+ ++.+ .|++.||+++++|.||++++...-..+         ....+..  ..+. 
T Consensus       213 ~~~l~~~~g~~i~~~~~v~~I~~~-~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~  290 (383)
T d2v5za1         213 SERIMDLLGDRVKLERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGIL  290 (383)
T ss_dssp             HHHHHHHHGGGEEESCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHH
T ss_pred             HHHHHHHcCCeEEecCcceEEEec-CCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCcc
Confidence            344456779999999999999873 3444 588999999999999999863211110         0000110  1111 


Q ss_pred             EEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          278 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       278 i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      -.....++....+|+.+|+.......        ..+..|+.+|+.+|..++
T Consensus       291 ~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~  334 (383)
T d2v5za1         291 TQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREIL  334 (383)
T ss_dssp             HHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHH
Confidence            11122334456789999976553322        345667888888888764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=3.4e-10  Score=99.34  Aligned_cols=149  Identities=19%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccc--------cCCHHHHHHHHHHHHhCCcEEEcCCceEEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFD  231 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~  231 (479)
                      .++||+|||+|++|+++|..|+++|. +|+++++++.+...        .................+.++.....+....
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE   82 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence            37999999999999999999999998 59999999876431        1344555555566667778887776542211


Q ss_pred             EcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh-----ccccc-ccCcEEEc-CcccCCCCCeEEEeeeccccccc
Q 011700          232 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE-----GQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKL  304 (479)
Q Consensus       232 ~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~-----~~~~~-~~g~i~Vd-~~l~t~~~~IyA~GD~~~~~~~~  304 (479)
                               ....+..+..+|.+++++|..+...+..     ..... ..+....+ ..++|+.+.||+.||+++...  
T Consensus        83 ---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~--  151 (196)
T d1gtea4          83 ---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN--  151 (196)
T ss_dssp             ---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred             ---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence                     0111223456788999998654333221     11112 23344444 568899999999999987543  


Q ss_pred             cCceeecccHHHHHHHHHHHHHHH
Q 011700          305 LGETRRLEHVDSARKSAKHAVAAI  328 (479)
Q Consensus       305 ~g~~~~~~~~~~A~~~g~~aa~~i  328 (479)
                              ++..|..+|+.++..+
T Consensus       152 --------~av~a~~~g~~~a~~v  167 (196)
T d1gtea4         152 --------TTVESVNDGKQASWYI  167 (196)
T ss_dssp             --------CHHHHHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHhhhehhH
Confidence                    2344556666666544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.98  E-value=1.1e-09  Score=87.60  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=72.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..+.++.....+|+++++.+..           +        |.+.    .+......+.+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i-----------l--------~~~d----~~~~~~~~~~l~~   74 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI-----------L--------RGFD----SELRKQLTEQLRA   74 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS-----------S--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccc-----------c--------cccc----chhhHHHHHHHhh
Confidence            368999999999999998877764444469999987531           0        1110    1112445677889


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~~~d~lviAtG  122 (479)
                      +||+++.++.+.++..+.   ..+.+++|+++.+|.+|+|||
T Consensus        75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            999999999999997542   357889999999999999998

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.4e-10  Score=92.41  Aligned_cols=91  Identities=11%  Similarity=0.000  Sum_probs=69.0

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEE--------E-----cc-------CCCCceEEEEc--cCCEEEEEEEeCCCHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVH--------Y-----GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKE  394 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~--------~-----~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~  394 (479)
                      |+.+|+  ..+.+.+++.+|+++.++..        .     ..       .....|.++.+  ++++|||+|++|++|+
T Consensus         1 Y~~vP~--~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~   78 (115)
T d1gesa3           1 YSNIPT--VVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD   78 (115)
T ss_dssp             CSSCCE--EECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred             CCCCCe--EecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence            567886  44567789999998654311        1     10       01134555444  6899999999999999


Q ss_pred             HH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          395 EY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       395 e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      |+ +.++.||+++.|++||.+++..||+++|.+.+.
T Consensus        79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~m  114 (115)
T d1gesa3          79 EMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTM  114 (115)
T ss_dssp             HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred             HHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHHhc
Confidence            98 558999999999999999999999999987653

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=9.7e-11  Score=94.05  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=68.0

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEE-------------EccC-----------CCCceEEEE--ccCCEEEEEEEeC
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVH-------------YGNF-----------SGTTFGAYW--VNKGRLVGSFLEG  390 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~-------------~~~~-----------~~~~~~~~~--~~~~~i~G~~~~g  390 (479)
                      |+.+|+  ..+.+.+++.+|+++.++..             +...           ....|.++.  .++++|||+|++|
T Consensus         1 Y~~vP~--~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG   78 (119)
T d1onfa3           1 YKLIPT--VIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG   78 (119)
T ss_dssp             CSSCCE--EECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred             CCcCCe--EeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence            567886  34567779999998754321             1100           012344433  3789999999999


Q ss_pred             CCHHHH-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          391 GTKEEY-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       391 ~~~~e~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      ++|+|+ +.++.||++|+|++||.+++..||+++|.|.+.
T Consensus        79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~~  118 (119)
T d1onfa3          79 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTL  118 (119)
T ss_dssp             TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHhC
Confidence            999998 558999999999999999999999999987643

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=3.2e-10  Score=100.87  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=68.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCccc----ccCCcc---cCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHT----CVGANE---ERL   76 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~---~~~   76 (479)
                      .||||||||||||++||.+++|.|.+   +.||+++.......++-+..-.      ..++...    ..+...   ..+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~~~ig~~~cnp~~gg------~~kg~l~reid~kG~av~a~raQ   72 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMMPFLPPKPPF------PPGSLLERAYDPKDERVWAFHAR   72 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCCCSCC------CTTCHHHHHCCTTCCCHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc---EEEEEeccchhcccccCCcccc------CCCcceeeeeeccchhhhhHHHH
Confidence            49999999999999999999999998   8999886421111111110000      0000000    000000   000


Q ss_pred             CH-hHHHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCCc
Q 011700           77 TP-KWYNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGARA  125 (479)
Q Consensus        77 ~~-~~~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~~  125 (479)
                      .. ......+++++.+ +|..+..++..   |.+.+|.++.++.|||+||.--
T Consensus        73 ~k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL  124 (230)
T d2cula1          73 AKYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL  124 (230)
T ss_dssp             HHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence            11 1123458999987 67777655543   5678899999999999999753

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=1.4e-10  Score=93.48  Aligned_cols=90  Identities=16%  Similarity=0.200  Sum_probs=68.7

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEEEc------------------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  396 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~  396 (479)
                      |+.+|+  ..+.+.+++++|+++.++...+                  ......|.++.+  ++++|||+|++|++++|+
T Consensus         1 Y~~iP~--~vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el   78 (123)
T d1v59a3           1 YNNIPS--VMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM   78 (123)
T ss_dssp             TTSCCE--EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCE--EeecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence            567885  4566788999999875431111                  001245666544  689999999999999998


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          397 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       397 -~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                       +.++.||++++|++||.+++..||+++|.+.+
T Consensus        79 I~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~  111 (123)
T d1v59a3          79 IAEAGLALEYGASAEDVARVCHAHPTLSEAFKE  111 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHH
Confidence             55899999999999999999999999887654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.94  E-value=2.3e-09  Score=98.56  Aligned_cols=137  Identities=20%  Similarity=0.299  Sum_probs=85.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc---------------------------c-------cCC------
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------R-------LFT------  203 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------------------------~-------~~~------  203 (479)
                      .++|||+|+.|+.+|..++++|.+|.++++.. +-.                           .       .++      
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~   81 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE   81 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence            48999999999999999999999999998752 100                           0       011      


Q ss_pred             ------HHHHHHHHHHHHhCCcEEEcCCc-e---EEEE--EcCCCcEEEEEeCCCcEEeccEEEEecCCCC-----Chhh
Q 011700          204 ------PKIASYYEEYYKSKGVKFVKGTV-L---SSFD--VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP-----NTSL  266 (479)
Q Consensus       204 ------~~~~~~~~~~l~~~GV~i~~~~~-v---~~i~--~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p-----~~~l  266 (479)
                            ..+.+.+.+.+++.||+++.+.- .   ..++  ..++.........+++++.+|.|++|||.+|     +.+.
T Consensus        82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~  161 (259)
T d1onfa1          82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN  161 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred             hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence                  11223345667889999987642 1   1111  1011111011112345799999999999999     3332


Q ss_pred             h---hcccccccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700          267 F---EGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP  301 (479)
Q Consensus       267 ~---~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~  301 (479)
                      +   +..+..+++.+.+|+..+|++.++|++||++...
T Consensus       162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~  199 (259)
T d1onfa1         162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK  199 (259)
T ss_dssp             SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred             cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence            2   2234446788999999999999999999998754

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.94  E-value=1.6e-10  Score=93.29  Aligned_cols=90  Identities=14%  Similarity=0.129  Sum_probs=68.5

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEEEEc--------c----------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  396 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~--------~----------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~  396 (479)
                      |+.+|+  ..+.+.+++.+|+++.++...|        +          .+...|.++..  ++|+|+|+|++|++++|+
T Consensus         1 Y~~iP~--~vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el   78 (123)
T d1dxla3           1 YDKVPG--VVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL   78 (123)
T ss_dssp             TTSCCE--EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCCCCE--EeecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence            567886  4456788999999875432111        0          11245666554  579999999999999998


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          397 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       397 -~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                       +.++.||++++|++||.+++..||+++|.+..
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~  111 (123)
T d1dxla3          79 IHEAAIALQYDASSEDIARVCHAHPTMSEAIKE  111 (123)
T ss_dssp             HHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHH
Confidence             56899999999999999999999999887644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=1.2e-09  Score=87.64  Aligned_cols=93  Identities=20%  Similarity=0.374  Sum_probs=71.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+..|..+++.|.+   |+++++.+..                   +|.+.    .+....+.+++++
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~l-------------------l~~~d----~ei~~~l~~~l~~   75 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKF-------------------LPAVD----EQVAKEAQKILTK   75 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSS-------------------STTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeeccc-------------------CCccc----chhHHHHHHHHHh
Confidence            46899999999999999999999987   9999988531                   11110    1122345678889


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeCCC---cEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTATG---ETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~~g---~~~~~d~lviAtG  122 (479)
                      +|++++.++++++++.++.  ++++.++   +++.+|++++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          76 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            9999999999999987665  3444333   5799999999998

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.93  E-value=2.2e-10  Score=107.63  Aligned_cols=102  Identities=9%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             CcEEEcCCceEEEEEcCCCc----EEEEEe-----CCCcEEeccEEEEecCCCCChhhh---------hcccc----c-c
Q 011700          218 GVKFVKGTVLSSFDVDSNGK----VVAVNL-----RDGNRLPTDMVVVGIGIRPNTSLF---------EGQLT----L-E  274 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~----v~~v~~-----~~g~~i~~D~Vi~a~G~~p~~~l~---------~~~~~----~-~  274 (479)
                      +.+++++++|++|+...++.    ...+..     .+++.+++|.||++++......+.         ...+.    . .
T Consensus       243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  322 (373)
T d1seza1         243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY  322 (373)
T ss_dssp             TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred             cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence            56788999999998643321    112222     234578999999998742211110         00000    0 1


Q ss_pred             cCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          275 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       275 ~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ++.+.+++.++|+.|+||++||+...+           .+..|+.+|+.||+.|..
T Consensus       323 ~~~~~~~~~~~t~~pglf~aGd~~~g~-----------~~~~A~~~G~~aA~~i~~  367 (373)
T d1seza1         323 DSVLDAIDKMEKNLPGLFYAGNHRGGL-----------SVGKALSSGCNAADLVIS  367 (373)
T ss_dssp             HHHHHHHHHHHHHSTTEEECCSSSSCS-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CcEeecccccCCCCCCEEEEecCCCch-----------hHHHHHHHHHHHHHHHHH
Confidence            122344567889999999999998753           366789999999998864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=2.8e-09  Score=86.42  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=80.2

Q ss_pred             CCeEEecCHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCC
Q 011700          139 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKG  218 (479)
Q Consensus       139 ~~v~~~~~~~~~~~l~~~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~G  218 (479)
                      .++.++.+++.+..+      +++|+|+|||+|.+|+|.|..|++...+||+++|++.+..   ++.+.+.   ..+...
T Consensus        17 kGVsyca~CDg~a~~------frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~~~---l~~~~n   84 (130)
T d1vdca2          17 RGISACAVCDGAAPI------FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQQR---ALSNPK   84 (130)
T ss_dssp             TTEESCHHHHTTSGG------GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHHHH---HHTCTT
T ss_pred             CcEEEEEEecCchHH------hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhhhc---cccCCc
Confidence            577776655432111      2689999999999999999999999999999999988643   4444433   334567


Q ss_pred             cEEEcCCceEEEEEcCC-CcEEEEEeCC---C--cEEeccEEEEec
Q 011700          219 VKFVKGTVLSSFDVDSN-GKVVAVNLRD---G--NRLPTDMVVVGI  258 (479)
Q Consensus       219 V~i~~~~~v~~i~~~~~-g~v~~v~~~~---g--~~i~~D~Vi~a~  258 (479)
                      |++++++++.++..++. +.+..+.+.|   +  +++++|-|++++
T Consensus        85 I~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          85 IDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             eEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            99999999999998432 3465665533   3  479999999975

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.91  E-value=5.3e-10  Score=90.67  Aligned_cols=91  Identities=9%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEE------E-----Ec--------cCCCCceEEEEc--cCCEEEEEEEeCCCHHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVV------H-----YG--------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE  395 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~------~-----~~--------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e  395 (479)
                      |..+|+  ..+.+.+++.+|+++.++.      .     +.        ......+.++..  ++|+|||+|++|++|+|
T Consensus         1 y~~VP~--aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E   78 (128)
T d1feca3           1 HTKVAC--AVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE   78 (128)
T ss_dssp             CSSCCE--EECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred             CCCCCE--EecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence            456885  3456677999999875431      1     11        011133555443  78999999999999999


Q ss_pred             H-HHHHHHHHcCCCcCcHHHHhhcCCCcccccCCC
Q 011700          396 Y-EAIAKATRLQPVVEDLAELETQGLGFALAVSQK  429 (479)
Q Consensus       396 ~-~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~~  429 (479)
                      + +.++.+|+.++|++||.+++..||+++|.+.+.
T Consensus        79 lI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~  113 (128)
T d1feca3          79 IIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSM  113 (128)
T ss_dssp             HHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred             HHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHH
Confidence            8 558999999999999999999999999988765

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.91  E-value=1.6e-09  Score=103.48  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |-+.++|+|||||++||+||..|++.+. ..+|+|+|+++.
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~   40 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGS   40 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSS
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCC
Confidence            5556899999999999999999988764 235999999975

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.91  E-value=3.5e-10  Score=101.42  Aligned_cols=116  Identities=22%  Similarity=0.331  Sum_probs=67.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcc------cccccCC-------CCCCCCCCcccccC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPAL------SKGYLLP-------EAPARLPSFHTCVG   70 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l------~~~~~~~-------~~~~~~~~~~~~~~   70 (479)
                      ++|+|||||||||++||.+++++|.+   |+|||+++..   ..|+      ++.++..       ........+.....
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~---V~liE~~~~G---G~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~   78 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALG---GTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA   78 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTT---HHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC---CcccccccccchhhhhhHHHHhhhhhccccccceEEec
Confidence            69999999999999999999999998   9999987531   1111      0000000       00000000000000


Q ss_pred             Cc-----------------ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           71 AN-----------------EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        71 ~~-----------------~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      ..                 .......++...+++++.+.... .+.  ..+. .++.++.+|++|||||++|..+|
T Consensus        79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~-~~~--~~~~-~~~~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1          79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LDG--KQVE-VDGQRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EET--TEEE-ETTEEEECSEEEECCCEEECCBT
T ss_pred             cceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecc-cCc--cccc-ccceeEeeceeeEcCCCCccccc
Confidence            00                 00011234556789999885433 332  3333 35578999999999999987765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.90  E-value=1.2e-09  Score=88.03  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+++|||||+.|+.+|..|+++|.+   |+|+++.+...            +     ++       ........+.+++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l~------------~-----~d-------~~~~~~~~~~l~~~   85 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMFL------------G-----LD-------EELSNMIKDMLEET   85 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCCT------------T-----CC-------HHHHHHHHHHHHHT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccce---EEEEecccccc------------C-----CC-------HHHHHHHHHHHHHC
Confidence            6899999999999999999999887   99999885310            0     00       11123456778899


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCC
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGA  123 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~  123 (479)
                      |++++.++++.+++.+  .+ +.+++.+++|.+|+|+|.
T Consensus        86 GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          86 GVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             TEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred             CcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence            9999999999888654  33 447778999999999994

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.90  E-value=3.3e-09  Score=84.77  Aligned_cols=95  Identities=16%  Similarity=0.261  Sum_probs=73.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..+.+++.+..+|+++++.+..           +        |.+.    ........+.+++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i-----------L--------~~~d----~~~~~~l~~~l~~   76 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI-----------L--------RGFD----HTLREELTKQLTA   76 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS-----------S--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh-----------h--------cccc----hHHHHHHHHHHHh
Confidence            368999999999999999988887766679999987531           1        1110    1112456677889


Q ss_pred             cCcEEEeCceEEEEECC---CcEEEeCCCcEEEeceEEeec
Q 011700           84 HGIELVLGTRVKSADVR---RKTLVTATGETISYKILIIAT  121 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~---~~~v~~~~g~~~~~d~lviAt  121 (479)
                      .||+++.++++.+++..   ..++.+++|+++++|.+|+|.
T Consensus        77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            99999999999999743   246788999999999999983

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.90  E-value=9.1e-09  Score=88.96  Aligned_cols=115  Identities=30%  Similarity=0.464  Sum_probs=83.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..||||||||++|+.+|..|+++|.+ ..|+++++.+..++....+...+.....    .      ...........+..
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~   71 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKA----T------AESLYLRTPDAYAA   71 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEECSCCSCCBCSGGGGTTTTTTCS----C------SGGGBSSCHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCc-eEEEEecCccccchhhhHHHHHHHHhhh----h------hhhhhhhhhhhhcc
Confidence            46999999999999999999998875 3455566665555544333322221110    0      01112345566777


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCccccc
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLE  129 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~  129 (479)
                      .+..+..+..+..++.+...+...++.++.+|.+++++|.+|..|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~  117 (185)
T d1q1ra1          72 QNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN  117 (185)
T ss_dssp             TTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred             cceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence            8888988888999999999999999999999999999999876554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.87  E-value=1e-09  Score=96.07  Aligned_cols=115  Identities=18%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccc-cCCcccCCCHhHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTC-VGANEERLTPKWY   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   81 (479)
                      +++||+||||||+|++||.+|+|+|.+   ++|+|+........   ...+........++++... .+......+.+..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~---v~vie~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~   77 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDIAP---GGQLTTTTDVENFPGFPEGILGVELTDKFRKQS   77 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBCT---TCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc---EEEEEeeccccccc---ccccccchhhhccccccccccchHHHHHHHHHH
Confidence            358999999999999999999999998   79999775422211   1111111111112222110 1111112233445


Q ss_pred             HHcCcEEEeCceEEEEECCCcEE-EeCCCcEEEeceEEeecCCC
Q 011700           82 NEHGIELVLGTRVKSADVRRKTL-VTATGETISYKILIIATGAR  124 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~v-~~~~g~~~~~d~lviAtG~~  124 (479)
                      .++++++..+ .|..++...+.. ...+...+.+|.+++++|..
T Consensus        78 ~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~  120 (192)
T d1vdca1          78 ERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV  120 (192)
T ss_dssp             HHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred             Hhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence            6789999876 688888665432 33455678999999999964

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.87  E-value=1.2e-09  Score=97.72  Aligned_cols=37  Identities=24%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.+|||+||||||||++||.+++++|.+   |+|||+++.
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~k---V~vie~~~~   37 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGA   37 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence            3579999999999999999999999988   999998754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.86  E-value=3.2e-09  Score=85.61  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=70.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|+++|.+   |+++|+.+.. +.     . .        ++       ........+++++
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~~-l~-----~-~--------~d-------~~~~~~~~~~l~~   84 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRP-LG-----V-Y--------LD-------KEFTDVLTEEMEA   84 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSST-TT-----T-T--------CC-------HHHHHHHHHHHHT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE---EEEEEecCcc-cc-----c-c--------cc-------hhhHHHHHHHhhc
Confidence            35899999999999999999999887   9999998631 00     0 0        00       1112345677888


Q ss_pred             cCcEEEeCceEEEEECCCc-EEEeCCCcEEEeceEEeec
Q 011700           84 HGIELVLGTRVKSADVRRK-TLVTATGETISYKILIIAT  121 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~-~v~~~~g~~~~~d~lviAt  121 (479)
                      .|++++.++.+.+++.+++ .....+++++++|.+|+|.
T Consensus        85 ~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          85 NNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             TTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             CCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            9999999999999987653 2345688899999999983

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.5e-09  Score=87.18  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=70.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHh
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK----RGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPK   79 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~----~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (479)
                      ..+++|||||+.|+.+|..|++    .|.+   |+++++++...      .         ..+|       ........+
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~---Vt~i~~~~~~l------~---------~~~~-------~~~~~~~~~   91 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM------G---------KILP-------EYLSNWTME   91 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT------T---------TTSC-------HHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCE---EEEecccccCC------c---------ccCC-------HHHHHHHHH
Confidence            3589999999999999988864    3554   99999986411      0         0011       111134566


Q ss_pred             HHHHcCcEEEeCceEEEEECCCc--EEEeCCCcEEEeceEEeecC
Q 011700           80 WYNEHGIELVLGTRVKSADVRRK--TLVTATGETISYKILIIATG  122 (479)
Q Consensus        80 ~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG  122 (479)
                      .++++||+++.++.|.+++.++.  .+++.+|+++.+|.+|+|+|
T Consensus        92 ~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            78899999999999999976554  57788999999999999999

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.84  E-value=4e-10  Score=91.02  Aligned_cols=90  Identities=16%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             CCCCCeEEEeecCcceEeecCCCceEE---------EEc--c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH
Q 011700          337 FDYLPFFYSRVFTLSWQFYGDNVGEVV---------HYG--N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY  396 (479)
Q Consensus       337 ~~~~p~~~~~~~~~~~~~~G~~~~~~~---------~~~--~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~  396 (479)
                      |+.+|+  ..+.+.+++++|+++.++.         .+.  +       .....|.++..  ++++|||+|++|++++|+
T Consensus         1 Y~~vP~--~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el   78 (124)
T d3lada3           1 YDLIPA--VIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL   78 (124)
T ss_dssp             TTCCCE--EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred             CCcCCe--EecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence            567885  4456778999999865431         111  0       11245666554  689999999999999998


Q ss_pred             -HHHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          397 -EAIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       397 -~~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                       +.++.+|+.++|++||.+++..||+++|.+.+
T Consensus        79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~  111 (124)
T d3lada3          79 VQQGAIAMEFGTSAEDLGMMVFAHPALSEALHE  111 (124)
T ss_dssp             HHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHH
Confidence             55899999999999999999889998887644

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=8.9e-11  Score=106.50  Aligned_cols=158  Identities=17%  Similarity=0.166  Sum_probs=85.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCC----CcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPP----GELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTP   78 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~----~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (479)
                      ++++|+|||+|||||+||.+|+++|++.    .+|+|+|+.+..        .+++....   .|.+..  .........
T Consensus         1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~--------GG~~~~gi---~p~~~~--~~~~~~~~~   67 (239)
T d1lqta2           1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP--------WGLVRSGV---APDHPK--IKSISKQFE   67 (239)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC--------STHHHHTS---CTTCTG--GGGGHHHHH
T ss_pred             CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC--------CCeeeecc---Cccccc--chhhhhhhh
Confidence            3579999999999999999999998532    359999998742        12221100   011100  001112223


Q ss_pred             hHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccccCCCCCCCCCe-EEecCHHHHH---HHH
Q 011700           79 KWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEEFGLSGSDAENV-CYLRDLADAN---RLV  154 (479)
Q Consensus        79 ~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~~g~~g~~~~~v-~~~~~~~~~~---~l~  154 (479)
                      .++...++++..++.+.   .+   +.. +.-...||++++|||+.+..+..++.+....... ..+.......   ...
T Consensus        68 ~~~~~~g~~~~~~~~v~---~~---~~~-~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (239)
T d1lqta2          68 KTAEDPRFRFFGNVVVG---EH---VQP-GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVV  140 (239)
T ss_dssp             HHHTSTTEEEEESCCBT---TT---BCH-HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEEC
T ss_pred             hhhccCCceEEEEEEec---cc---cch-hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccc
Confidence            45566789998886432   11   001 1112369999999999876665533322111100 0000000000   000


Q ss_pred             HHHhcCCCCCEEEECCChHHHHHHHHHh
Q 011700          155 NVMKSCSGGNAVVIGGGYIGMECAASLV  182 (479)
Q Consensus       155 ~~l~~~~~~~vvVIGgG~~g~E~A~~l~  182 (479)
                      ....  .+++++|+|++..+++++..+.
T Consensus       141 ~~~~--~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         141 GWIK--RGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             THHH--HCSCSCTTHHHHHHHHHHHHHH
T ss_pred             eeec--CCCEEEEeCCCchHHHHHHHHH
Confidence            0000  2567888888999999887653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.83  E-value=3e-10  Score=102.02  Aligned_cols=37  Identities=19%  Similarity=0.327  Sum_probs=33.9

Q ss_pred             CCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            2 GRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++|||+||||||||++||.+|+|.|++   |+|||+.+.
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~---V~viE~~~~   37 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKG   37 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccC
Confidence            4789999999999999999999999998   899998753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=4e-09  Score=91.30  Aligned_cols=109  Identities=19%  Similarity=0.222  Sum_probs=68.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      |||+||||||+|++||.+++|+|.+   +++||+....     .    +........++.+....+......+....++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~---v~iie~~~gg-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGG-----Q----ILDTVDIENYISVPKTEGQKLAGALKVHVDEY   69 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTG-----G----GGGCCEECCBTTBSSEEHHHHHHHHHHHHHTS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCe---EEEEEEecCC-----c----ccccccceeccccchhhhHHHHHHHHHHhhhe
Confidence            8999999999999999999999998   8999976310     0    11001111222222111111112233445567


Q ss_pred             CcEEEeCceEEEEECCC-----cEEEeCCCcEEEeceEEeecCCCc
Q 011700           85 GIELVLGTRVKSADVRR-----KTLVTATGETISYKILIIATGARA  125 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~-----~~v~~~~g~~~~~d~lviAtG~~~  125 (479)
                      +.+......+..+....     +.....+..++..+.+++++|..+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          70 DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             CEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             eceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            78888776666665432     234455667899999999999654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=4.7e-08  Score=94.66  Aligned_cols=116  Identities=19%  Similarity=0.244  Sum_probs=69.2

Q ss_pred             HHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---------------CcEEeccEEEEecCCCCChh--hhhc-
Q 011700          208 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---------------GNRLPTDMVVVGIGIRPNTS--LFEG-  269 (479)
Q Consensus       208 ~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---------------g~~i~~D~Vi~a~G~~p~~~--l~~~-  269 (479)
                      ..+.+..++.|+++..+..+.++...+++.+..+...+               +....++..+++.|.+....  +++. 
T Consensus       145 ~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~  224 (380)
T d2gmha1         145 SWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF  224 (380)
T ss_dssp             HHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHT
T ss_pred             HHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhhh
Confidence            34445556677777777777777665555544443321               12456788888988765432  2221 


Q ss_pred             cccc---ccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          270 QLTL---EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       270 ~~~~---~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      .+..   ..+++.  ..-+...+++..+||+++.-++.++     +-+..|+..|+.||+.+..
T Consensus       225 ~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~~  281 (380)
T d2gmha1         225 DLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIFN  281 (380)
T ss_dssp             TTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHHH
Confidence            1111   111110  0112346899999999998665443     5577889999999988864

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.80  E-value=1.2e-09  Score=88.55  Aligned_cols=88  Identities=11%  Similarity=0.142  Sum_probs=66.8

Q ss_pred             CCCeEEEeecCcceEeecCCCceEEE---------E--c-------cCCCCceEEEEc--cCCEEEEEEEeCCCHHHH-H
Q 011700          339 YLPFFYSRVFTLSWQFYGDNVGEVVH---------Y--G-------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  397 (479)
Q Consensus       339 ~~p~~~~~~~~~~~~~~G~~~~~~~~---------~--~-------~~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~  397 (479)
                      .+|+  ..+.+.+++++|+++.++..         +  .       ......|.++.+  ++|+|||+|++|++++|+ +
T Consensus         3 ~IP~--~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~   80 (128)
T d1ojta3           3 VIPG--VAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIG   80 (128)
T ss_dssp             CCCE--EECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHH
T ss_pred             cCCE--eecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHH
Confidence            4776  44677889999998765311         1  1       011245666554  689999999999999998 5


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          398 AIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       398 ~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      .++.||++++|++||.+++..||+++|.+.+
T Consensus        81 ~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~  111 (128)
T d1ojta3          81 EVCLAIEMGCDAADIGKTIHPHPTLGESIGM  111 (128)
T ss_dssp             HHHHHHHTTCBHHHHHTSCCCSSSSTTHHHH
T ss_pred             HHHHHHHcCCCHHHHhhCcCcCCCHHHHHHH
Confidence            5899999999999999999999998886644

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.80  E-value=3.8e-09  Score=100.30  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             HHhCCcEEEcCCceEEEEEcCCCcEEEEEe--CCCcEEeccEEEEecCCC--------CChhhh-hcccc---cccCcEE
Q 011700          214 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGNRLPTDMVVVGIGIR--------PNTSLF-EGQLT---LEKGGIK  279 (479)
Q Consensus       214 l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--~~g~~i~~D~Vi~a~G~~--------p~~~l~-~~~~~---~~~g~i~  279 (479)
                      +++.|++++++++|++|+.++++....+..  .++++++||.||+|++..        |..... ...+.   .......
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~~  324 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQH  324 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHHH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcccccc
Confidence            355689999999999999855443323333  234689999999998632        221100 00000   0000111


Q ss_pred             EcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          280 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       280 Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      .++.+.+...+||++||++..+.         ..+..|+..|..||.+|-
T Consensus       325 ~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~  365 (370)
T d2iida1         325 FSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN  365 (370)
T ss_dssp             HHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence            22334445567999999887553         235678999999998873

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.80  E-value=1e-08  Score=81.64  Aligned_cols=92  Identities=15%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+.+|..|++.|.+   |+|+++.+..           +        +.+.    ........+.+++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~i-----------l--------~~~d----~~~~~~~~~~l~~   75 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRI-----------L--------RKFD----ESVINVLENDMKK   75 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSS-----------C--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc---ceeeehhccc-----------c--------cccc----HHHHHHHHHHHHh
Confidence            46899999999999999999998877   9999988531           0        1110    1112445667888


Q ss_pred             cCcEEEeCceEEEEECCC---cEEEeCCCcEE-EeceEEeec
Q 011700           84 HGIELVLGTRVKSADVRR---KTLVTATGETI-SYKILIIAT  121 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~---~~v~~~~g~~~-~~d~lviAt  121 (479)
                      .||+++.++.+.+++...   .++.+.+|+++ .||.||+|.
T Consensus        76 ~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          76 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             CCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            999999999999997332   35778899877 579999983

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=8.2e-09  Score=88.52  Aligned_cols=89  Identities=17%  Similarity=0.207  Sum_probs=71.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc----------cCCHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------LFTPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~----------~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .+|+|+|||+|+.|++.|..|+++|.+|+++++.+.+-..          ....++.+.+.+.+++.||++++++.|+. 
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~-  120 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-  120 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence            5799999999999999999999999999999998765221          12346777888889999999999987631 


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                          +           ....+|.|++|+|..|...
T Consensus       121 ----~-----------~~~~~d~vilAtG~~~~~~  140 (179)
T d1ps9a3         121 ----D-----------QLQAFDETILASGIPNRAL  140 (179)
T ss_dssp             ----S-----------SSCCSSEEEECCCEECCTT
T ss_pred             ----c-----------ccccceeEEEeecCCCccc
Confidence                1           1346799999999887653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.75  E-value=8.8e-09  Score=82.76  Aligned_cols=93  Identities=16%  Similarity=0.208  Sum_probs=68.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..|+++|.+   |+++++.+...                   +.+.    ........+.+++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~l-------------------~~~d----~~~~~~~~~~l~~   75 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK-------------------LIKD----NETRAYVLDRMKE   75 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT-------------------TCCS----HHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchh---heEeeccchhh-------------------cccc----cchhhhhhhhhhc
Confidence            36899999999999999999998876   99999885311                   1000    0112345677889


Q ss_pred             cCcEEEeCceEEEEECCCc--E--EE---eCCCcEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRK--T--LV---TATGETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~--v~---~~~g~~~~~d~lviAtG  122 (479)
                      .+++++.++++..++.+..  .  +.   ..+++++++|.+|+|+|
T Consensus        76 ~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          76 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             cccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            9999999999999976532  1  11   23456799999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.75  E-value=1.2e-08  Score=81.45  Aligned_cols=91  Identities=21%  Similarity=0.345  Sum_probs=67.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..++++|.+   |+++++.+..           +        |.+.    .+......+.+++
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~i-----------l--------~~~d----~~~~~~l~~~l~~   75 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEI-----------L--------SGFE----KQMAAIIKKRLKK   75 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSS-----------S--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCccceeeeeeecccccE---EEEEEeccee-----------c--------cccc----chhHHHHHHHHHh
Confidence            46899999999999999999999987   9999998641           0        1110    1122345677889


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEe-CCC--cEEEeceEEee
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVT-ATG--ETISYKILIIA  120 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~-~~g--~~~~~d~lviA  120 (479)
                      .||+++.++.+.+++.....  +.+ .+|  +++.+|.|++.
T Consensus        76 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          76 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            99999999999999765433  333 233  57899999974

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=1.2e-09  Score=87.16  Aligned_cols=87  Identities=13%  Similarity=0.056  Sum_probs=65.1

Q ss_pred             CCCeEEEeecCcceEeecCCCceEE---------EE--cc-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-H
Q 011700          339 YLPFFYSRVFTLSWQFYGDNVGEVV---------HY--GN-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  397 (479)
Q Consensus       339 ~~p~~~~~~~~~~~~~~G~~~~~~~---------~~--~~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~  397 (479)
                      .+|+  ..+.+.+++.+|+++.++.         .+  .+       .....|.++.+  ++++|+|+|++|++++|+ +
T Consensus         3 ~iP~--~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~   80 (118)
T d1xdia2           3 TVAA--TVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELIL   80 (118)
T ss_dssp             GCEE--EECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred             CCCE--EecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHH
Confidence            4675  4466788999999865431         11  10       11245666554  579999999999999998 5


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          398 AIAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       398 ~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                      .++.||++++|++||.+++..||+++|.+.
T Consensus        81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~  110 (118)
T d1xdia2          81 PIAVAVQNRITVNELAQTLAVYPSLSGSIT  110 (118)
T ss_dssp             HHHHHHHHTCBHHHHHTSBCCSSSTHHHHH
T ss_pred             HHHHHHHcCCCHHHHhhCCCCCCCHHHHHH
Confidence            589999999999999999988888877653

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.74  E-value=2e-09  Score=85.49  Aligned_cols=86  Identities=14%  Similarity=0.072  Sum_probs=64.6

Q ss_pred             CCeEEEeecCcceEeecCCCceEEEEc-----------c-------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-HH
Q 011700          340 LPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EA  398 (479)
Q Consensus       340 ~p~~~~~~~~~~~~~~G~~~~~~~~~~-----------~-------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~~  398 (479)
                      +|+  ..+.+.+++++|+++.++...|           +       .+...|.++.+  ++++|||+|++|++++|+ +.
T Consensus         2 vP~--~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~   79 (115)
T d1ebda3           2 IPA--VVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE   79 (115)
T ss_dssp             CCE--EECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred             cCe--EecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence            564  4456788999999876532111           0       01245666544  589999999999999998 55


Q ss_pred             HHHHHHcCCCcCcHHHHhhcCCCcccccC
Q 011700          399 IAKATRLQPVVEDLAELETQGLGFALAVS  427 (479)
Q Consensus       399 ~~~~i~~~~~~~dl~~~~~~~~~~a~~~~  427 (479)
                      ++.+|+.++|++||.++...||+++|.+.
T Consensus        80 ~~~ai~~~~t~~~l~~~i~~hPT~sE~~~  108 (115)
T d1ebda3          80 LGLAIEAGMTAEDIALTIHAHPTLGEIAM  108 (115)
T ss_dssp             HHHHHHHTCBHHHHHHSCCCTTSSTHHHH
T ss_pred             HHHHHHcCCCHHHHhhCCCCCCCHHHHHH
Confidence            89999999999999999988888887553

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.73  E-value=3.9e-09  Score=97.08  Aligned_cols=36  Identities=22%  Similarity=0.435  Sum_probs=33.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||||+|+.+|..++++|.+   |++||+.+.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~k---v~vve~~~~   76 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPF   76 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCc
Confidence            479999999999999999999999987   899998764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.73  E-value=7.2e-09  Score=97.33  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=35.1

Q ss_pred             HHHcCcEEEeCceEEEEECCCcE---EEeCCCcEEEeceEEeecCCC
Q 011700           81 YNEHGIELVLGTRVKSADVRRKT---LVTATGETISYKILIIATGAR  124 (479)
Q Consensus        81 ~~~~gv~~~~~~~v~~i~~~~~~---v~~~~g~~~~~d~lviAtG~~  124 (479)
                      +++.|++++.+++|+++..++..   |.+.+| ++++|+||+|+|..
T Consensus       158 a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~  203 (305)
T d1pj5a2         158 TESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFW  203 (305)
T ss_dssp             HHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred             hhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchh
Confidence            45679999999999999887665   445444 79999999999975

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.73  E-value=1.9e-09  Score=87.32  Aligned_cols=85  Identities=18%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             CeEEEeecCcceEeecCCCceEEE---------E--ccCC------CCceEEEEc--cCCEEEEEEEeCCC-HHHH-HHH
Q 011700          341 PFFYSRVFTLSWQFYGDNVGEVVH---------Y--GNFS------GTTFGAYWV--NKGRLVGSFLEGGT-KEEY-EAI  399 (479)
Q Consensus       341 p~~~~~~~~~~~~~~G~~~~~~~~---------~--~~~~------~~~~~~~~~--~~~~i~G~~~~g~~-~~e~-~~~  399 (479)
                      .++...+||++++++|+++.++..         +  .+..      ...|.++..  ++++|||+|++|++ ++|+ +.+
T Consensus         4 gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~   83 (126)
T d1nhpa3           4 GSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAI   83 (126)
T ss_dssp             CCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHH
T ss_pred             cCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHH
Confidence            455678899999999998865411         1  1110      134555554  67999999999965 8886 678


Q ss_pred             HHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          400 AKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       400 ~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      +.||+.++|++||.++.   +.|+|+|++
T Consensus        84 ~~ai~~~~t~~dL~~~~---~~yhPt~se  109 (126)
T d1nhpa3          84 SLAIQAKMTIEDLAYAD---FFFQPAFDK  109 (126)
T ss_dssp             HHHHHTTCBHHHHHTCC---CCCCTTTCC
T ss_pred             HHHHHcCCCHHHHhcCc---ccCCCCCch
Confidence            99999999999999887   556666654

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.72  E-value=1.6e-09  Score=87.12  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CCCeEEEeecCcceEeecCCCceEEEEc--------c----------CCCCceEEEEc--cCCEEEEEEEeCCCHHHH-H
Q 011700          339 YLPFFYSRVFTLSWQFYGDNVGEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-E  397 (479)
Q Consensus       339 ~~p~~~~~~~~~~~~~~G~~~~~~~~~~--------~----------~~~~~~~~~~~--~~~~i~G~~~~g~~~~e~-~  397 (479)
                      .+|.  ..+.+.+++++|+++.++...|        +          .+...|.++..  ++++|||+|++|++++|+ +
T Consensus         3 ~iP~--vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~   80 (123)
T d1lvla3           3 AIAA--VCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST   80 (123)
T ss_dssp             CCCE--EECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred             CCCE--EEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHH
Confidence            4675  4466778999999876442111        0          01234655544  579999999999999998 5


Q ss_pred             HHHHHHHcCCCcCcHHHHhhcCCCcccccCC
Q 011700          398 AIAKATRLQPVVEDLAELETQGLGFALAVSQ  428 (479)
Q Consensus       398 ~~~~~i~~~~~~~dl~~~~~~~~~~a~~~~~  428 (479)
                      .++.||+.++|++||.+++..||+++|.+.+
T Consensus        81 ~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~  111 (123)
T d1lvla3          81 AFAQSLEMGACLEDVAGTIHAHPTLGEAVQE  111 (123)
T ss_dssp             HHHHHHHHTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred             HHHHHHHcCCCHHHHhcCCCCCCCHHHHHHH
Confidence            6899999999999999999999999887654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.72  E-value=1.2e-08  Score=85.24  Aligned_cols=93  Identities=27%  Similarity=0.418  Sum_probs=66.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV  239 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~  239 (479)
                      .+++|+|||||++|+|+|..+.++|. .|++++|++..... ..+..    ...+...+++++....+.++.. ++++..
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~-a~~~~----~~~a~~~~~~~~~~~~~~ei~~-~~~~~~  117 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEE----VELAKEEKCEFLPFLSPRKVIV-KGGRIV  117 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHH----HHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhc-cchhh----eeecccccceeEeccccEEEEe-cCCceE
Confidence            36789999999999999999999975 58899887654332 22222    2234567899999988888876 345444


Q ss_pred             EEEe------CCC---------cEEeccEEEEecC
Q 011700          240 AVNL------RDG---------NRLPTDMVVVGIG  259 (479)
Q Consensus       240 ~v~~------~~g---------~~i~~D~Vi~a~G  259 (479)
                      .+..      .+|         .+++||.|++|+|
T Consensus       118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG  152 (153)
T d1gtea3         118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG  152 (153)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred             EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence            4332      122         3689999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.9e-08  Score=80.70  Aligned_cols=92  Identities=13%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+..|..|+++|.+   |+|+++++..                    |.+.    .+......+.+++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~~l--------------------~~~D----~~~~~~l~~~l~~   72 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILL--------------------RGFD----QDMANKIGEHMEE   72 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSS--------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCe---EEEEEechhh--------------------ccCC----HHHHHHHHHHHHH
Confidence            35899999999999999999999987   9999865321                    1110    1112445677889


Q ss_pred             cCcEEEeCceEEEEECC----Cc--EEEeCC---C--cEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVR----RK--TLVTAT---G--ETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~----~~--~v~~~~---g--~~~~~d~lviAtG  122 (479)
                      .||+++.++.+.++...    ..  .+....   +  ..+.+|.|++|+|
T Consensus        73 ~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          73 HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            99999999988877532    12  233222   2  2467999999998

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2e-08  Score=81.11  Aligned_cols=93  Identities=20%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..|+++|.+   |+++++.+..           +        |.+.    ........+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~~-----------l--------~~~d----~~~~~~~~~~l~~   75 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKV-----------L--------RSFD----SMISTNCTEELEN   75 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS-----------C--------TTSC----HHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeecccc-----------c--------cchh----hHHHHHHHHHHHH
Confidence            36899999999999999999999987   9999998631           0        1110    1122445677889


Q ss_pred             cCcEEEeCceEEEEECCCcE--EEe---CCC------cEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRKT--LVT---ATG------ETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~--v~~---~~g------~~~~~d~lviAtG  122 (479)
                      .||+++.++++.++......  +..   ..|      ....+|.|++|+|
T Consensus        76 ~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          76 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            99999999999999654432  221   222      2467999999998

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.69  E-value=1e-07  Score=88.91  Aligned_cols=103  Identities=16%  Similarity=0.230  Sum_probs=82.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc----------------------------------ccC--CHHH
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------RLF--TPKI  206 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------~~~--~~~~  206 (479)
                      -+|+|||+|++|+-+|..|.+.|.+|+++++.+.+-.                                  ..+  .+++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~   87 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   87 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence            3689999999999999999999999999998644210                                  000  1467


Q ss_pred             HHHHHHHHHhCCc--EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC--CCChh
Q 011700          207 ASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS  265 (479)
Q Consensus       207 ~~~~~~~l~~~GV--~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~--~p~~~  265 (479)
                      .+++++..++.++  .++++++|++++.+++.....|.+.++.++.+|.||+|+|.  .|...
T Consensus        88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p  150 (298)
T d1w4xa1          88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG  150 (298)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred             HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence            7788888888888  59999999999865565667899999999999999999995  44443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.67  E-value=2e-08  Score=80.95  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+.|+..|..++++|.+   |+++++.+..           +        |.+.    .+....+.+.+++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~i-----------l--------~~~d----~~~~~~l~~~l~~   79 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGL-----------M--------QGAD----RDLVKVWQKQNEY   79 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSS-----------S--------TTSC----HHHHHHHHHHHGG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeeccc-----------c--------ccch----hhHHHHHHHHHHH
Confidence            46899999999999999999999987   9999998531           0        1100    1112345677888


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEeC--CC--cEEEeceEEeecC
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVTA--TG--ETISYKILIIATG  122 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~~--~g--~~~~~d~lviAtG  122 (479)
                      +|++++.++++.++..+..  .+.+.  ++  +++++|.|++|+|
T Consensus        80 ~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          80 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             cCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            9999999999998875544  34432  22  4799999999998

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=5.8e-09  Score=94.14  Aligned_cols=125  Identities=20%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCCcc-cccccCC----CCCCCCCCcccccC--C----
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERPAL-SKGYLLP----EAPARLPSFHTCVG--A----   71 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~~l-~~~~~~~----~~~~~~~~~~~~~~--~----   71 (479)
                      .+|+||||||||++||.++++++.+..+|++||++....  .+..|+ +|.++..    ......+.+.....  .    
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d   81 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS   81 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence            589999999999999999999888777799999975310  011111 1111100    00000111110000  0    


Q ss_pred             -------------cccCCCHhHHHHcCcEEEeCceEEEEECC----CcEEE--eCCC--cEEEeceEEeecCCCcccccc
Q 011700           72 -------------NEERLTPKWYNEHGIELVLGTRVKSADVR----RKTLV--TATG--ETISYKILIIATGARALKLEE  130 (479)
Q Consensus        72 -------------~~~~~~~~~~~~~gv~~~~~~~v~~i~~~----~~~v~--~~~g--~~~~~d~lviAtG~~~~~~~~  130 (479)
                                   .........++..+++++.+.. ..++..    .+.+.  ..+|  .++++|.+|+|||.+|+.++.
T Consensus        82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~-~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~  160 (233)
T d1xdia1          82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRG-ELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPS  160 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE-EECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGG
T ss_pred             eeeeccccceeeeeeecceehhhcccceeEEECcc-cccccccccccceEEEEecCCceeeeecceeeeecCcccccccc
Confidence                         0001123446678999998843 333321    12333  3444  478999999999999887654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.65  E-value=2.2e-08  Score=91.59  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=70.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC-cccc---------cccCCCCCCCCCCcccc---
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAP--YERP-ALSK---------GYLLPEAPARLPSFHTC---   68 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~--~~~~-~l~~---------~~~~~~~~~~~~~~~~~---   68 (479)
                      ..+|+||||||+|+++|..|+++|++   |+|+|+++...  +... .++.         +............+...   
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   80 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL   80 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEecc
Confidence            47899999999999999999999987   99999975421  1100 0000         00000000000000000   


Q ss_pred             cCCc-------ccC-C----CHhHH-HHcCcEEEeCceEEEEECCC--cEEEeCCCcEEEeceEEeecCCCc
Q 011700           69 VGAN-------EER-L----TPKWY-NEHGIELVLGTRVKSADVRR--KTLVTATGETISYKILIIATGARA  125 (479)
Q Consensus        69 ~~~~-------~~~-~----~~~~~-~~~gv~~~~~~~v~~i~~~~--~~v~~~~g~~~~~d~lviAtG~~~  125 (479)
                      .+..       ... .    ....+ ...++.++.++++..++...  -++++.+|+++++|.+|.|.|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          81 TGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             TCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             CCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence            0000       000 0    01111 23468888999999887654  456778999999999999999664

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=1.1e-08  Score=96.12  Aligned_cols=90  Identities=16%  Similarity=0.273  Sum_probs=64.0

Q ss_pred             HHHHHHhCCcEEEcCCceEEEEEcCC------CcEEEEEe---CCCc--EEeccEEEEecCCCCC-------hh------
Q 011700          210 YEEYYKSKGVKFVKGTVLSSFDVDSN------GKVVAVNL---RDGN--RLPTDMVVVGIGIRPN-------TS------  265 (479)
Q Consensus       210 ~~~~l~~~GV~i~~~~~v~~i~~~~~------g~v~~v~~---~~g~--~i~~D~Vi~a~G~~p~-------~~------  265 (479)
                      +.+.+++.+++++.++.+.++..+++      +++..+..   .+++  .+.++.|++|+|--..       ..      
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG  223 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDG  223 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHH
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceeccc
Confidence            45566788999999999998876432      25666654   2343  4789999999983221       11      


Q ss_pred             --h-hhccccc-ccCcEEEcCcccCCCCCeEEEeeecc
Q 011700          266 --L-FEGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       266 --l-~~~~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                        + .+.+..+ +.++|.+|++.+|+.|++||+|+++.
T Consensus       224 ~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~  261 (305)
T d1chua2         224 IAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY  261 (305)
T ss_dssp             HHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred             EeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence              1 1234444 56889999999999999999999754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.64  E-value=3.4e-09  Score=95.40  Aligned_cols=101  Identities=16%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHHc
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNEH   84 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
                      .+|+|||||||||+||.+|++.+. ..+|+|+|+.+.. +       +++...........     .........++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~-g-------G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~   67 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-F-------GLVRFGVAPDHPEV-----KNVINTFTQTARSD   67 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-C-------THHHHTSCTTCGGG-----GGHHHHHHHHHTST
T ss_pred             CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCC-C-------ceehhhcccccccc-----ccchhhhhhhhhcC
Confidence            589999999999999999988653 3459999998742 1       11110000000000     00112234456677


Q ss_pred             CcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcc
Q 011700           85 GIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARAL  126 (479)
Q Consensus        85 gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~  126 (479)
                      ++++..++.+.   .+   +...+ -.-.||.+++|||+.+.
T Consensus        68 ~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~  102 (230)
T d1cjca2          68 RCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDK  102 (230)
T ss_dssp             TEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEE
T ss_pred             CeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeecccc
Confidence            89998876541   11   10000 01258999999999754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.62  E-value=8.2e-08  Score=87.45  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             CcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhh---hccc------cc-ccCcEEEc----Cc
Q 011700          218 GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQL------TL-EKGGIKVT----GR  283 (479)
Q Consensus       218 GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~---~~~~------~~-~~g~i~Vd----~~  283 (479)
                      +..+..++.+..++.. +.. ..+.+.||+.+++|.++++.+........   ...+      .. ..+...++    +.
T Consensus       224 ~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~  301 (347)
T d1b5qa1         224 DPRLQLNKVVREIKYS-PGG-VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ  301 (347)
T ss_dssp             CTTEESSCCEEEEEEC-SSC-EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred             cccccccccccccccc-Ccc-EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence            4567888888998873 333 35888999999999999987632211100   0000      00 11222222    34


Q ss_pred             ccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHcC
Q 011700          284 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME  330 (479)
Q Consensus       284 l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~~  330 (479)
                      ++++.++||++||++....+        ..+..|..+|..||+.|++
T Consensus       302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~  340 (347)
T d1b5qa1         302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILIN  340 (347)
T ss_dssp             HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHH
Confidence            67889999999999875433        3466688889999988864

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=5.3e-08  Score=78.08  Aligned_cols=91  Identities=21%  Similarity=0.388  Sum_probs=66.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      +.+++|||||+.|+.+|..|+++|.+   |+|+++.+..                   +|.+.    .+......+.+++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~~-------------------l~~~d----~ei~~~l~~~l~~   76 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQI-------------------GASMD----GEVAKATQKFLKK   76 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS-------------------SSSSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc---eeEEEecccc-------------------chhhh----hhhHHHHHHHHHh
Confidence            46899999999999999999999987   9999998641                   11110    1122445677889


Q ss_pred             cCcEEEeCceEEEEECC--CcEE--EeCC-----CcEEEeceEEee
Q 011700           84 HGIELVLGTRVKSADVR--RKTL--VTAT-----GETISYKILIIA  120 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~--~~~v--~~~~-----g~~~~~d~lviA  120 (479)
                      .||+++.++++.+++..  +..+  ...+     ++++++|.|++|
T Consensus        77 ~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          77 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99999999999988753  3333  3322     247899999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.60  E-value=2.2e-09  Score=95.90  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +||+|||||||||++||.+++|.|.+   |+|||+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~k---V~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEecCCC
Confidence            59999999999999999999999987   999999853

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=1.8e-08  Score=91.08  Aligned_cols=59  Identities=12%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCC-CcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          203 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       203 ~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~-g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      ...+.+.+.+.+++.|++|+++++|++|+.+++ +++..| +.+|+++.||.||....+-|
T Consensus       235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~  294 (297)
T d2bcgg1         235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFP  294 (297)
T ss_dssp             TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhcc
Confidence            356778888999999999999999999976444 556544 46788999999988654444

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.3e-07  Score=89.02  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|+|||+||+++++++. ..+|+|+||.+.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~~   41 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP   41 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCCC
Confidence            5899999999999999999998742 234999999863

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.54  E-value=6.7e-08  Score=77.62  Aligned_cols=91  Identities=15%  Similarity=0.281  Sum_probs=67.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      ..+++|||||+-|+..|..++++|.+   |+++++.+...                   |.+.    ......+.+.+++
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l-------------------~~~d----~~~~~~l~~~l~~   78 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV-------------------PTMD----AEIRKQFQRSLEK   78 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSC----HHHHHHHHHHHHH
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccC-------------------chhh----hcchhhhhhhhhc
Confidence            46899999999999999999999987   99999986410                   1100    1112345678889


Q ss_pred             cCcEEEeCceEEEEECCCc--EEEe--C-CC--cEEEeceEEee
Q 011700           84 HGIELVLGTRVKSADVRRK--TLVT--A-TG--ETISYKILIIA  120 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~--~v~~--~-~g--~~~~~d~lviA  120 (479)
                      .||+++.++.+.+++..+.  ++.+  . ++  +++.+|.+++|
T Consensus        79 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          79 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             ccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            9999999999999986543  3332  2 33  45899999988

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.51  E-value=1.5e-08  Score=83.39  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=64.0

Q ss_pred             CCCeEEEeecCcceEeecCCCceEEEEcc----------------------------------CCCCceEEEEc--cCCE
Q 011700          339 YLPFFYSRVFTLSWQFYGDNVGEVVHYGN----------------------------------FSGTTFGAYWV--NKGR  382 (479)
Q Consensus       339 ~~p~~~~~~~~~~~~~~G~~~~~~~~~~~----------------------------------~~~~~~~~~~~--~~~~  382 (479)
                      .+|.  ..+.+.+++++|+++.++...|.                                  .....|.++.+  ++++
T Consensus         3 ~iP~--vvfT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~   80 (140)
T d1mo9a3           3 NYPD--FLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRK   80 (140)
T ss_dssp             SCCE--EEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCB
T ss_pred             CCCc--EeccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCc
Confidence            3575  44567889999998765421110                                  00123566554  7899


Q ss_pred             EEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHH--hhcCCCcccccCC
Q 011700          383 LVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAEL--ETQGLGFALAVSQ  428 (479)
Q Consensus       383 i~G~~~~g~~~~e~-~~~~~~i~~~~~~~dl~~~--~~~~~~~a~~~~~  428 (479)
                      |||+|++|++|+|+ +.++.||++++|++||+++  +-.||++++....
T Consensus        81 IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~  129 (140)
T d1mo9a3          81 VLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSR  129 (140)
T ss_dssp             EEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHH
Confidence            99999999999998 5589999999999999987  5567887765443

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.50  E-value=1.5e-07  Score=83.97  Aligned_cols=126  Identities=17%  Similarity=0.240  Sum_probs=81.5

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHH---h----cCCCCCEEEECCChHHHHHHHHHhhC--------------------
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVM---K----SCSGGNAVVIGGGYIGMECAASLVIN--------------------  184 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l---~----~~~~~~vvVIGgG~~g~E~A~~l~~~--------------------  184 (479)
                      ++||.+.++|+...++-.   ..+..   .    ...+++|+|||+|.+|+++|..+.+.                    
T Consensus         5 ~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~   81 (225)
T d1cjca1           5 DIPGEELPGVFSARAFVG---WYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS   81 (225)
T ss_dssp             CCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred             CCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence            458989999987554321   11110   0    12479999999999999999999873                    


Q ss_pred             C-CeEEEEeecCccccccCCHHHHHH-----------------------------------HHHHH--------------
Q 011700          185 K-INVTMVFPEAHCMARLFTPKIASY-----------------------------------YEEYY--------------  214 (479)
Q Consensus       185 g-~~Vtlv~~~~~~l~~~~~~~~~~~-----------------------------------~~~~l--------------  214 (479)
                      | .+|+++.|+...-...-.+++.+.                                   +.+.+              
T Consensus        82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (225)
T d1cjca1          82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS  161 (225)
T ss_dssp             CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred             CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence            3 689999988643222112232221                                   11111              


Q ss_pred             HhCCcEEEcCCceEEEEEcCCC-cEEEEEeC---------------CC--cEEeccEEEEecCC
Q 011700          215 KSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR---------------DG--NRLPTDMVVVGIGI  260 (479)
Q Consensus       215 ~~~GV~i~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~i~~D~Vi~a~G~  260 (479)
                      ..+++.+++...+.++..++++ ++..+++.               .|  .+++||+||.|+|+
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence            1356899999999999885554 56655442               12  25899999999995

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.46  E-value=7.5e-07  Score=84.43  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=98.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC--CeEEEEeecCcccc----------------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA----------------------------------------  199 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l~----------------------------------------  199 (479)
                      -|+|+|||+|++|+-+|..|.+.+  .+|+++++++.+-.                                        
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            379999999999999999998766  59999999865410                                        


Q ss_pred             -----------------------ccC--CHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCC---Cc---E
Q 011700          200 -----------------------RLF--TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GN---R  248 (479)
Q Consensus       200 -----------------------~~~--~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~---g~---~  248 (479)
                                             ..+  -+++.+.+.+..+..+..++++++|++++.+ +++. .|++.+   ++   +
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~-~~~w-~Vt~~~~~~~~~~~~  161 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKK-DGSW-VVTYKGTKAGSPISK  161 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEE-TTEE-EEEEEESSTTCCEEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEec-CCEE-EEEEEecCCCCeEEE
Confidence                                   000  1356677777777778899999999999984 4442 244332   22   4


Q ss_pred             EeccEEEEecCC--CCChhhh-----hc--ccc-----c-ccCcEEEcCc---ccCCCCCeEEEeeeccccccccCceee
Q 011700          249 LPTDMVVVGIGI--RPNTSLF-----EG--QLT-----L-EKGGIKVTGR---LQSSNSSVYAVGDVAAFPLKLLGETRR  310 (479)
Q Consensus       249 i~~D~Vi~a~G~--~p~~~l~-----~~--~~~-----~-~~g~i~Vd~~---l~t~~~~IyA~GD~~~~~~~~~g~~~~  310 (479)
                      ..+|.||+|+|.  .|+...+     ..  .+.     . .++.-..+-+   +....|.+..+|=....          
T Consensus       162 ~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v----------  231 (335)
T d2gv8a1         162 DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV----------  231 (335)
T ss_dssp             EEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS----------
T ss_pred             EEeeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEE----------
Confidence            569999999995  3443211     00  011     1 1111111111   12256777777743322          


Q ss_pred             cccHHHHHHHHHHHHHHHcCCC
Q 011700          311 LEHVDSARKSAKHAVAAIMEPD  332 (479)
Q Consensus       311 ~~~~~~A~~~g~~aa~~i~~~~  332 (479)
                       -.......|+..+++-+.+..
T Consensus       232 -~~~~~~e~Qa~~~a~~~~g~~  252 (335)
T d2gv8a1         232 -VPFPTSQAQAAFLARVWSGRL  252 (335)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTSS
T ss_pred             -ecCCchHHHHHHHHHHHcCCc
Confidence             223456678888888777654

>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.34  E-value=3.5e-06  Score=63.91  Aligned_cols=82  Identities=20%  Similarity=0.302  Sum_probs=65.6

Q ss_pred             CCCCCCCeEEEeecCcceEeecCCCceE--EE-EccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCc
Q 011700          335 DKFDYLPFFYSRVFTLSWQFYGDNVGEV--VH-YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED  411 (479)
Q Consensus       335 ~~~~~~p~~~~~~~~~~~~~~G~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~d  411 (479)
                      ..|..+|+|||.+|+..++++|...+..  +. .++.+...|..++.++|+|+|+..+|. +.++..+..+|+.+.++. 
T Consensus         3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~vn~-~~~~~~~rrli~~~~~~~-   80 (97)
T d1d7ya3           3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNN-ARDFAPLRRLLAVGAKPD-   80 (97)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHTTCCCC-
T ss_pred             CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEEeCC-HHHHHHHHHHHHCCCCCC-
Confidence            5789999999999999999999865432  33 344445678888889999999999994 788888899999998874 


Q ss_pred             HHHHhhc
Q 011700          412 LAELETQ  418 (479)
Q Consensus       412 l~~~~~~  418 (479)
                      .+.|..+
T Consensus        81 ~~~LaD~   87 (97)
T d1d7ya3          81 RAALADP   87 (97)
T ss_dssp             HHHHHSS
T ss_pred             HHHhcCC
Confidence            6666543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.33  E-value=1.3e-06  Score=81.37  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP  262 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p  262 (479)
                      +...+.+.+++.|++++.+++|++++. +++++..|.+.+| +++||.||+|+|...
T Consensus       150 l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         150 AVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             hhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchhH
Confidence            444555667788999999999999998 5777878888776 799999999999654

>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.32  E-value=3.4e-06  Score=64.70  Aligned_cols=81  Identities=15%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             CCCCCCeEEEeecCcceEeecCCCc--eEEEEccCCCCceEEEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHH
Q 011700          336 KFDYLPFFYSRVFTLSWQFYGDNVG--EVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLA  413 (479)
Q Consensus       336 ~~~~~p~~~~~~~~~~~~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~  413 (479)
                      .++.+|||||.+|+..++++|...+  +.+..|+.....|..|+.++|+|+|+..+|. +.++..+..+|+.+..+. .+
T Consensus         3 ~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~vn~-~~~~~~~r~li~~~~~~~-~~   80 (103)
T d1q1ra3           3 RDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDTVNR-PVEFNQSKQIITDRLPVE-PN   80 (103)
T ss_dssp             CCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEEESC-HHHHHHHHHHHHTTCCCC-HH
T ss_pred             CCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEEeCC-HHHHHHHHHHHHCCCCcC-HH
Confidence            4667999999999999999998653  5567777777789889999999999999994 678888889999988775 55


Q ss_pred             HHhhc
Q 011700          414 ELETQ  418 (479)
Q Consensus       414 ~~~~~  418 (479)
                      .|.++
T Consensus        81 ~L~D~   85 (103)
T d1q1ra3          81 LLGDE   85 (103)
T ss_dssp             HHTCT
T ss_pred             HhcCC
Confidence            55443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.31  E-value=6.3e-07  Score=82.59  Aligned_cols=35  Identities=34%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHH-cCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK-RGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~-~g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||+||+||.+|++ .|++   |+|+|+.+.
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~~~   68 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVS   68 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecCCC
Confidence            5899999999999999999987 4887   999999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=4.8e-07  Score=85.68  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +++||+|||+|+|||+||++++++|.+   |+|+||.+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~~~   41 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP   41 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCCCC
Confidence            368999999999999999999999987   899999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.26  E-value=3.1e-07  Score=71.64  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+|+|+|||+|.+|+++|..|++.+.+++++.+++.....               ..++...  ..+.+++.  +++  .
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~~~~~--~~i~~~~~--~~~--~   89 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NESLQQV--PEITKFDP--TTR--E   89 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSSEEEE--CCEEEEET--TTT--E
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------cccceec--CCeeEEec--CCC--E
Confidence            6899999999999999999999999998887776554321               1233333  34667764  232  4


Q ss_pred             EEeCCCcEEe-ccEEEEe
Q 011700          241 VNLRDGNRLP-TDMVVVG  257 (479)
Q Consensus       241 v~~~~g~~i~-~D~Vi~a  257 (479)
                      +.+.||++++ .|.|++|
T Consensus        90 v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          90 IYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             EEETTTEEECCCSEEEEC
T ss_pred             EEEcCCCEEeCCCEEEEC
Confidence            7889998876 6999986

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.24  E-value=3.2e-07  Score=82.04  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=32.6

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +|||+|||||||||+||.+|+++|++   |+|||+.+.
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~~~   40 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKT   40 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSC
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence            69999999999999999999999987   999998753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.21  E-value=3e-06  Score=77.46  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhcccccccC
Q 011700          206 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKG  276 (479)
Q Consensus       206 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~~~g  276 (479)
                      +.+.+.+.++++|++++.+++|++|+.  ++....|.+.+| ++.||.||+|+|.....-+...++...++
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~~~~  220 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNNADG  220 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCCCSS
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCcccc
Confidence            344556667788999999999999986  344567888776 79999999999976443222334443333

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.19  E-value=4.3e-07  Score=84.12  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||+||||||+||++|..|+++|++   |+|+|+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~---v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCC
Confidence            36999999999999999999999997   99999986

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.15  E-value=7e-06  Score=74.28  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=74.6

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc-----cCCHHHHHHH--------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYY--------------------------  210 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~--------------------------  210 (479)
                      .+||+|||+|+.|+-+|..|++.|.+|+++++++.....     .+.+...+.+                          
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   83 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence            579999999999999999999999999999987543211     0112211111                          


Q ss_pred             ------------------HHH-HHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChh
Q 011700          211 ------------------EEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       211 ------------------~~~-l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                                        ... -...++.++.+..+.+++...++  ..+++.||+++.+|.++.|.|......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHHH
T ss_pred             eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEecccccccccc
Confidence                              111 12346788999999999874333  468899999999999999999776544

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.14  E-value=8.1e-07  Score=80.41  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++||||||||++|+++|++|+++|++   |+|+|++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYS---VHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCCC
Confidence            457999999999999999999999987   99999975

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.12  E-value=1.6e-06  Score=79.42  Aligned_cols=36  Identities=17%  Similarity=0.371  Sum_probs=31.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++||+|||||||||++|..|+++|..  +|+|+|+.+.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIG--KVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCCCC
Confidence            36999999999999999999999963  2899999875

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.10  E-value=1.2e-06  Score=79.46  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||+|||||+|||+||.+|+++|.++  |+|+|+++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~--V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITD--LLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCc--EEEEECCCC
Confidence            48999999999999999999999643  999999864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=8.5e-06  Score=71.75  Aligned_cols=95  Identities=17%  Similarity=0.302  Sum_probs=69.4

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC-cc----------------ccccCC------HHHHHHHHHHHH-hCCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA-HC----------------MARLFT------PKIASYYEEYYK-SKGV  219 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~~----------------l~~~~~------~~~~~~~~~~l~-~~GV  219 (479)
                      .|+|||+|+.|+|.|...++.|.++.+++.+. .+                +.+..+      ......+++.++ ..++
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL   83 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL   83 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence            58999999999999999999999999997642 11                000001      112233344443 4588


Q ss_pred             EEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCC
Q 011700          220 KFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI  260 (479)
Q Consensus       220 ~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~  260 (479)
                      +++.+. |.++.. +++++..|.+.+|.++.+..||++||.
T Consensus        84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT  122 (230)
T d2cula1          84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS  122 (230)
T ss_dssp             EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred             HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence            888665 667665 577888999999999999999999995

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=1.4e-06  Score=75.31  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .+.+|+||||||+||+||.+|+++|+++  |+|+|+.+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~--V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSD--ITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCC--EEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCe--EEEEEecCc
Confidence            3579999999999999999999999854  899999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1.1e-06  Score=81.70  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      +|+||||||++|++||..|++.|++   |+|+|+.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~~~i   36 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHI   36 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCc---EEEEECCCCc
Confidence            8999999999999999999999987   9999999763

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.04  E-value=2.2e-06  Score=75.68  Aligned_cols=62  Identities=26%  Similarity=0.339  Sum_probs=42.6

Q ss_pred             CCCCCCCCCeEEecCHHHHHHHHHHH---h----cCCCCCEEEECCChHHHHHHHHHh--------------------hC
Q 011700          132 GLSGSDAENVCYLRDLADANRLVNVM---K----SCSGGNAVVIGGGYIGMECAASLV--------------------IN  184 (479)
Q Consensus       132 g~~g~~~~~v~~~~~~~~~~~l~~~l---~----~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~  184 (479)
                      ++||.+.++|+...++-.   ..+..   .    ...+++|+|||+|++|+++|..+.                    +.
T Consensus         5 ~IPGedl~gV~~A~dfl~---~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~   81 (216)
T d1lqta1           5 NIPGEDLPGSIAAVDFVG---WYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR   81 (216)
T ss_dssp             CCTTTTSTTEEEHHHHHH---HHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred             CCCCCCCCCcEeHHHHHH---HHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhc
Confidence            458989999987554321   11100   0    124789999999999999998776                    34


Q ss_pred             C-CeEEEEeecCc
Q 011700          185 K-INVTMVFPEAH  196 (479)
Q Consensus       185 g-~~Vtlv~~~~~  196 (479)
                      + .+|+++.|+..
T Consensus        82 ~~~~V~iv~RRg~   94 (216)
T d1lqta1          82 GIQEVVIVGRRGP   94 (216)
T ss_dssp             CCCEEEEECSSCG
T ss_pred             CCceEEEEEECCh
Confidence            4 47999988743

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=6.4e-06  Score=69.02  Aligned_cols=45  Identities=13%  Similarity=0.249  Sum_probs=35.5

Q ss_pred             HhHHHHcCcEEEeCceEEEEECCCcEEEeCCC-cEEEeceEEeecC
Q 011700           78 PKWYNEHGIELVLGTRVKSADVRRKTLVTATG-ETISYKILIIATG  122 (479)
Q Consensus        78 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g-~~~~~d~lviAtG  122 (479)
                      ...++..+++++.++.+..++.+...+...+. +++.+|.+|+|+|
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence            34567889999999999999877655554333 4589999999999

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.03  E-value=1.4e-06  Score=80.65  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++|+|||||+|||+||++|+++|++   |+|+|+++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~~~   35 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGK   35 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence            6899999999999999999999987   999999875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=1.3e-05  Score=71.44  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            5899999999999999999999999999998654

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.01  E-value=1.7e-06  Score=81.29  Aligned_cols=36  Identities=25%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.++|+|||||++||+||.+|+++|++   |+|+|+++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~---V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence            357999999999999999999999987   999999865

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.00  E-value=1.8e-06  Score=82.69  Aligned_cols=38  Identities=24%  Similarity=0.294  Sum_probs=35.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      |..+|||||||+|+||+.+|.+|++.|++   |+|+|+...
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~k---VlvLEaG~~   38 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYK---VAMFDIGEI   38 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCe---EEEEecCCC
Confidence            78899999999999999999999999987   999999854

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.00  E-value=8.7e-06  Score=67.72  Aligned_cols=75  Identities=17%  Similarity=0.056  Sum_probs=53.7

Q ss_pred             CeEEEE--CCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            5 FVYVIV--GGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         5 ~dvvII--GgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      ..++|+  |||+-|+.+|..|+++|.+   |+++++.+....       ...                ........+.+.
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~---Vtlv~~~~~~~~-------~~~----------------~~~~~~~~~~l~   93 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVHLANY-------MHF----------------TLEYPNMMRRLH   93 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSCTTTH-------HHH----------------TTCHHHHHHHHH
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCe---EEEEecCCcccc-------ccc----------------hhHHHHHHHHHh
Confidence            345555  9999999999999999987   999999853110       000                001133456778


Q ss_pred             HcCcEEEeCceEEEEECCCcEEE
Q 011700           83 EHGIELVLGTRVKSADVRRKTLV  105 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~v~  105 (479)
                      +.|++++.++.+.+++.+...+.
T Consensus        94 ~~GV~i~~~~~v~~i~~~~v~l~  116 (156)
T d1djqa2          94 ELHVEELGDHFCSRIEPGRMEIY  116 (156)
T ss_dssp             HTTCEEEETEEEEEEETTEEEEE
T ss_pred             hccceEEeccEEEEecCcceEEE
Confidence            89999999999999987654443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.2e-06  Score=80.63  Aligned_cols=36  Identities=19%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ++.||||||||+|||+||.+|+++|++   |+|+|+++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence            457899999999999999999999987   999999875

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.86  E-value=2.9e-06  Score=75.53  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.4

Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      ..+|+|+|||+|.+|+++|..+++.+.+++++.+.+
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            368999999999999999999999999998887664

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=1.7e-05  Score=70.36  Aligned_cols=127  Identities=14%  Similarity=0.178  Sum_probs=77.8

Q ss_pred             CEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcccc---------ccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEE
Q 011700          164 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMA---------RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV  232 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l~---------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~  232 (479)
                      +|+|||+|+.|+.+|..|++.  +.+|+++++.+.+..         ......+.+.....+++.|++++.++.+..   
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---   79 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR---   79 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT---
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc---
Confidence            799999999999999999764  789999999876521         012234556667778889999998876521   


Q ss_pred             cCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhhccccc-ccCcEEEcCccc-CCCCCeEEEeeecccc
Q 011700          233 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFP  301 (479)
Q Consensus       233 ~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~~~~~~-~~g~i~Vd~~l~-t~~~~IyA~GD~~~~~  301 (479)
                        +-     ...+ -.-.+|.+++|+|..+........... +...+......+ .+.+..+..|+....+
T Consensus        80 --~~-----~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  142 (230)
T d1cjca2          80 --DV-----TVQE-LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP  142 (230)
T ss_dssp             --TB-----CHHH-HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred             --cc-----cHHH-HHhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence              10     0000 012579999999987654322211111 111111111112 2467788887765543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=4.1e-05  Score=71.29  Aligned_cols=88  Identities=19%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             HHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe---CCCc--EEeccEEEEecCC-----CCChh----------h-hhc
Q 011700          211 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI-----RPNTS----------L-FEG  269 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~Vi~a~G~-----~p~~~----------l-~~~  269 (479)
                      .+..+..+|+++.++.+.++.. +++++..+..   .+|+  .+.++.||+|||-     ..++.          + ++.
T Consensus       142 ~~~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a  220 (311)
T d1kf6a2         142 QTSLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH  220 (311)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred             HHHHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence            3344456899999999999987 5677766643   4564  4679999999983     22211          1 123


Q ss_pred             cccc-ccCcEEEcCcccCCCCCeEEEeeecc
Q 011700          270 QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAA  299 (479)
Q Consensus       270 ~~~~-~~g~i~Vd~~l~t~~~~IyA~GD~~~  299 (479)
                      +..+ +-.+|.++++..++.+++|+.+++..
T Consensus       221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~  251 (311)
T d1kf6a2         221 GVPLRDMGGIETDQNCETRIKGLFAVGECSS  251 (311)
T ss_dssp             TCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred             ccceeecccccccccchhcccCCCcCcceee
Confidence            3444 55788888888899999999999875

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.83  E-value=6.7e-05  Score=68.05  Aligned_cols=157  Identities=17%  Similarity=0.142  Sum_probs=95.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCC-eEEEEeecCcccccc----CCHH-------------------------------
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARL----FTPK-------------------------------  205 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~~~~l~~~----~~~~-------------------------------  205 (479)
                      |-+|+|||+|+.|+-+|..|++.|. +|+|+++++.+....    +.+.                               
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g   80 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG   80 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence            3479999999999999999999996 999999886532110    0111                               


Q ss_pred             -------------------------HHHHHHH--HHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCC----cEEeccEE
Q 011700          206 -------------------------IASYYEE--YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMV  254 (479)
Q Consensus       206 -------------------------~~~~~~~--~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~V  254 (479)
                                               ....+.+  .....++.+..+++++.++..+++ + .+.+.++    +++.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-v-~v~~~~g~~~~~~~~ad~v  158 (288)
T d3c96a1          81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR-V-LIGARDGHGKPQALGADVL  158 (288)
T ss_dssp             CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE-E-EEEEEETTSCEEEEEESEE
T ss_pred             CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc-E-EEEEEcCCCCeEEEeecee
Confidence                                     0111111  122357888888888888874333 3 3555554    47999999


Q ss_pred             EEecCCCCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeeccccccccCceeecccHHHHHHHHHHHHHHHc
Q 011700          255 VVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM  329 (479)
Q Consensus       255 i~a~G~~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  329 (479)
                      +.|-|....+.-.....    ..............++..+||.+....+..|+     ....|+..+...+..+.
T Consensus       159 i~ADG~~S~vr~~~~~~----~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~  224 (288)
T d3c96a1         159 VGADGIHSAVRAHLHPD----QRPLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA  224 (288)
T ss_dssp             EECCCTTCHHHHHHCTT----CCCCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred             eccCCccceeeeeeccc----cccccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence            99999876543211100    00001111223556889999998755443332     24456666766666654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.80  E-value=6.7e-06  Score=76.93  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      .++|+|||||++||+||..|++.|++   |+|+|++++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECCCCC
Confidence            47899999999999999999998876   9999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.70  E-value=5.2e-05  Score=62.52  Aligned_cols=34  Identities=15%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|||||||..|+-+|..+.|+|.+.  |+++.+.+
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~--V~vi~rr~   79 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARR--VFLVFRKG   79 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSE--EEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcc--eeEEEeCC
Confidence            58999999999999999999998764  88886653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.69  E-value=1.6e-05  Score=75.15  Aligned_cols=35  Identities=29%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             cCeEEEECCchHHHHHHHHHH-----HcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFT-----KRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~-----~~g~~~~~V~lie~~~~   41 (479)
                      .|||+||||||+|+++|..|+     +.|++   |+|+|+.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~---v~vlEr~~~   46 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST   46 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCc---EEEEcCCCC
Confidence            589999999999999999996     45787   999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.64  E-value=3.4e-06  Score=75.32  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=59.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccC----------CHHHHHHHHHHHHhCCcEEEcCCceEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------TPKIASYYEEYYKSKGVKFVKGTVLSSF  230 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~GV~i~~~~~v~~i  230 (479)
                      .+++++|||+|+.|+.+|..|+++|.+|+++++++++.....          .....+.....+.+.+....   . ..+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~  123 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNK---E-SQL  123 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCT---T-CEE
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcce---e-eee
Confidence            479999999999999999999999999999999876532110          01122222233332211111   0 011


Q ss_pred             EEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhh
Q 011700          231 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSL  266 (479)
Q Consensus       231 ~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l  266 (479)
                      .. ...   .+...+..++.+|.|++|||..+....
T Consensus       124 ~~-~~~---~~~~~~~~~~~~d~vviAtG~~~~~~~  155 (233)
T d1djqa3         124 AL-GQK---PMTADDVLQYGADKVIIATGASECTLW  155 (233)
T ss_dssp             EC-SCC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred             ec-ccc---cccchhhhhhccceeeeccCCCccccc
Confidence            11 111   111223346789999999999887654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.63  E-value=0.00017  Score=65.93  Aligned_cols=125  Identities=17%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc--c----cCC---------------------------------
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--R----LFT---------------------------------  203 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~----~~~---------------------------------  203 (479)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.+....  .    .+.                                 
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~   82 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence            3799999999999999999999999999998743110  0    000                                 


Q ss_pred             --------------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe-CCCc--EEeccEEEEecCC
Q 011700          204 --------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGI  260 (479)
Q Consensus       204 --------------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~Vi~a~G~  260 (479)
                                          ..+.+.+.+.+++.+..++...........++..+ .+.+ .+|+  ++.||+||-|-|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDGF  161 (292)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCCT
T ss_pred             ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCce-EEEEecCCcEEEEEeCEEEECCCC
Confidence                                23445556666677777777766555544333333 3433 4554  5789999999998


Q ss_pred             CCChhhhhcccccccCcEEEcCcccCCCCCeEEEeeecccc
Q 011700          261 RPNTSLFEGQLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFP  301 (479)
Q Consensus       261 ~p~~~l~~~~~~~~~g~i~Vd~~l~t~~~~IyA~GD~~~~~  301 (479)
                      +....-.   +..          ........+.+||+....
T Consensus       162 ~S~vR~~---i~~----------~~~~~~~~~~~~~~~~~~  189 (292)
T d1k0ia1         162 HGISRQS---IPA----------ERMQHGRLFLAGDAAHIV  189 (292)
T ss_dssp             TCSTGGG---SCG----------GGSEETTEEECGGGTEEC
T ss_pred             CCcccce---eee----------ccccccccccceeeeeec
Confidence            7654311   100          012345677788886543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=2.4e-05  Score=74.06  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=30.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHH----cCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTK----RGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~----~g~~~~~V~lie~~~~   41 (479)
                      ++||||||+|+||++||++|++    .|.+   |+||||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~---V~vieK~~~   59 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV   59 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCE---EEEEeCCCC
Confidence            4899999999999999999986    3655   999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.58  E-value=2e-05  Score=73.47  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=31.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKR--GVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~--g~~~~~V~lie~~~~   41 (479)
                      ++||+||||||||++||.+|+++  |++   |+|+|+.+.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~---~~~~~~~~~   86 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVA   86 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCe---EEEEEcCCC
Confidence            57999999999999999999975  776   999999865

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00017  Score=67.49  Aligned_cols=31  Identities=29%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            5899999999999999999999999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.41  E-value=5e-05  Score=72.30  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=31.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++||||||+|++|+.+|.+|++.|++   |+|+|+..
T Consensus         7 ~~dvIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~   40 (370)
T d3coxa1           7 RVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGR   40 (370)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence            58999999999999999999999987   99999974

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=1.3e-05  Score=71.18  Aligned_cols=92  Identities=16%  Similarity=0.132  Sum_probs=65.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCC-------CeEEEEeecCcccc--------c-cCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          162 GGNAVVIGGGYIGMECAASLVINK-------INVTMVFPEAHCMA--------R-LFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g-------~~Vtlv~~~~~~l~--------~-~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      |.+|+|||+|+.|+.+|..|.+.|       .+||++++.+.+-.        . .....+.+...+.+.+.|+++++++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            679999999999999999999876       58999999875421        1 1223455666677888999999997


Q ss_pred             ceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCCh
Q 011700          226 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT  264 (479)
Q Consensus       226 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~  264 (479)
                      .+.....          . +.-...+|.+++++|..+..
T Consensus        82 ~v~~~~~----------~-~~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVGEHVQ----------P-GELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBTTTBC----------H-HHHHHHSSEEEECCCCCEEC
T ss_pred             Eeccccc----------h-hhhhccccceeeecCCCccc
Confidence            6421100          0 11123589999999976543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=2.6e-05  Score=68.35  Aligned_cols=127  Identities=28%  Similarity=0.450  Sum_probs=94.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCC--cccccCCc--------
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPS--FHTCVGAN--------   72 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~--------   72 (479)
                      .++++||||||++|+.+|.+|++++. ..+|++|++++..||.||.+++.+...........  +....+..        
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP   81 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence            35789999999999999999998775 57899999999999999999887765433211000  00000000        


Q ss_pred             ---ccCCCHhHHHHcCcEEEeCceEEEEECCCcEEEeCCCcEEEeceEEeecCCCcccccc
Q 011700           73 ---EERLTPKWYNEHGIELVLGTRVKSADVRRKTLVTATGETISYKILIIATGARALKLEE  130 (479)
Q Consensus        73 ---~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~~  130 (479)
                         ........+++.||+++.+++|.+|+.+.++|.+.+|+++.||+||+|||+.|..++.
T Consensus        82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l  142 (213)
T d1m6ia1          82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVEL  142 (213)
T ss_dssp             GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTT
T ss_pred             hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhh
Confidence               0011223446789999999999999999999999999999999999999988765443

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00032  Score=55.56  Aligned_cols=88  Identities=13%  Similarity=0.235  Sum_probs=61.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHH-
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWY-   81 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (479)
                      +.++|+|||+|.+++..|..|++...+   |+++.+.+..  .             .   .           ....+.+ 
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~---V~li~r~~~~--~-------------~---~-----------~~~~~~~~   76 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEM--K-------------A---D-----------QVLQDKLR   76 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSSSC--C-------------S---C-----------HHHHHHHH
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCc---eEEEeccccc--c-------------c---c-----------cccccccc
Confidence            357999999999999999999986544   9999776421  0             0   0           1112223 


Q ss_pred             HHcCcEEEeCceEEEEECCCcE---EEeC---CC--cEEEeceEEeecC
Q 011700           82 NEHGIELVLGTRVKSADVRRKT---LVTA---TG--ETISYKILIIATG  122 (479)
Q Consensus        82 ~~~gv~~~~~~~v~~i~~~~~~---v~~~---~g--~~~~~d~lviAtG  122 (479)
                      +..+|+++.++.+.++.-++..   +.+.   ++  +++..|.|+++.|
T Consensus        77 ~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          77 SLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             TCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             cccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            3457999999999998865432   3332   23  4689999999987

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.36  E-value=6.9e-05  Score=71.20  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.||+||||+|+||+.+|.+|++.|.+   |+|+|+.+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~---VlvLEaG~~   36 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGP   36 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCe---EEEEEccCC
Confidence            369999999999999999999998876   999999853

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.00027  Score=65.48  Aligned_cols=42  Identities=14%  Similarity=0.310  Sum_probs=34.3

Q ss_pred             HHhcCCCCCEEEECCChHHHHHHHHHhhC--CCeEEEEeecCcc
Q 011700          156 VMKSCSGGNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC  197 (479)
Q Consensus       156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~  197 (479)
                      .+.......|+|||+|+.|+.+|..|+++  |.+|+++++.+.+
T Consensus        44 ~~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          44 DLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             HHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            33333467899999999999999999864  8999999988643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00052  Score=54.27  Aligned_cols=92  Identities=15%  Similarity=0.095  Sum_probs=62.2

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +..+|+|||+|-+++..|..|++...+   |+++-+.+....               .  +        .......+...
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~~~---------------~--~--------~~~~~~~~~~~   77 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFRA---------------E--K--------ILIKRLMDKVE   77 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSSCCC---------------C--H--------HHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCc---EEEEeecccccc---------------h--h--------HHHHHHHHhhc
Confidence            357999999999999999999987654   999977642100               0  0        00011223334


Q ss_pred             HcCcEEEeCceEEEEECCCcE---EEeCC---C---cEEEeceEEeecC
Q 011700           83 EHGIELVLGTRVKSADVRRKT---LVTAT---G---ETISYKILIIATG  122 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~~---v~~~~---g---~~~~~d~lviAtG  122 (479)
                      ..++.++.++.+.++.-++..   +.+.+   +   +++..|.|+++.|
T Consensus        78 ~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          78 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             TSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            568899999899888876542   33332   1   4689999999877

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.24  E-value=0.00011  Score=69.70  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||||||+|++|+.+|.+|++.|++   |+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCe---EEEEecCCC
Confidence            4899999999999999999999987   999999753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00019  Score=62.70  Aligned_cols=114  Identities=19%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc------------------------------c-cc---ccCCH-----
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH------------------------------C-MA---RLFTP-----  204 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~------------------------------~-l~---~~~~~-----  204 (479)
                      .++|||+|+.|+++|..+++.|.+|+++++...                              . ..   ..++.     
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE   84 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence            489999999999999999999999999986421                              0 00   00111     


Q ss_pred             -------HHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCcEEeccEEEEecCCCCChhhhh----ccccc
Q 011700          205 -------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE----GQLTL  273 (479)
Q Consensus       205 -------~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~~~l~~----~~~~~  273 (479)
                             .+.....+.++..||+++.+.-.  +..  .... .+. .+..++.++.+++++|.+|..+...    ..+.+
T Consensus        85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~~--~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L  158 (221)
T d3grsa1          85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FTS--DPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL  158 (221)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--ECS--CSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred             hhheEEeeeccchhhhhccCceEEEEEeee--ecc--ccce-eee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence                   12223345678889999876531  111  1111 122 2345788999999999877654221    12333


Q ss_pred             ccCcEEEcCc
Q 011700          274 EKGGIKVTGR  283 (479)
Q Consensus       274 ~~g~i~Vd~~  283 (479)
                      ++.+|.+|+.
T Consensus       159 ~~~gv~~~~~  168 (221)
T d3grsa1         159 NKLGIQTDDK  168 (221)
T ss_dssp             GGTTCCBCTT
T ss_pred             hhcCcEECCC
Confidence            4445655543

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.12  E-value=0.00016  Score=69.46  Aligned_cols=35  Identities=23%  Similarity=0.446  Sum_probs=31.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      .||+||||+|+||+..|.+|++.+ .+   |+|||+.+.
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~---VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIK---VLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCC---EEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCe---EEEEcCCCC
Confidence            599999999999999999999976 45   999999964

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.02  E-value=0.00019  Score=68.78  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=31.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcC-CCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRG-VPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g-~~~~~V~lie~~~~   41 (479)
                      .||+||||+|+||+..|.+|++.+ .+   |+|||+.+.
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~---VLvLEaG~~   52 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNIS---VLVIESGSY   52 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCC---EEEEESSCC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCe---EEEECCCCC
Confidence            489999999999999999999865 44   999999964

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=96.96  E-value=0.00014  Score=68.78  Aligned_cols=34  Identities=24%  Similarity=0.511  Sum_probs=29.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      .||+||||+|+||+.+|.+|++. .+   |+|||+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~k---VLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YK---VLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SC---EEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CC---EEEEecCCC
Confidence            48999999999999999999874 55   999999963

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.93  E-value=0.0031  Score=56.90  Aligned_cols=102  Identities=17%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhh-CCCeEEEEeecCcccccc--------------CC----------------------
Q 011700          161 SGGNAVVIGGGYIGMECAASLVI-NKINVTMVFPEAHCMARL--------------FT----------------------  203 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~l~~~--------------~~----------------------  203 (479)
                      ....|+|||+|+.|+.+|..|++ .|.+|+++++++.+-...              ..                      
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  111 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH  111 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence            35679999999999999999987 599999999886431100              00                      


Q ss_pred             --HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEe--------------CCCcEEeccEEEEecCCCCC
Q 011700          204 --PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------RDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       204 --~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~--------------~~g~~i~~D~Vi~a~G~~p~  263 (479)
                        ..+...+.+..+..++.+..++.+..+.. +++++..+..              .++.++.++.++.++|....
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence              12233444556677888888888877765 3444444432              12357889999999997644

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.0014  Score=51.82  Aligned_cols=87  Identities=22%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHH
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYN   82 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (479)
                      +.++|+|||||-+++..|..|++...+   |++|-+.+.+.-.                            .....+...
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~ra~----------------------------~~~~~~l~~   81 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSK---VYIIHRRDAFRAS----------------------------KIMQQRALS   81 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSE---EEEECSSSSCCSC----------------------------HHHHHHHHT
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCc---EEEEEeccccccc----------------------------hhhhhcccc
Confidence            468999999999999999999986544   9999777431000                            011233344


Q ss_pred             HcCcEEEeCceEEEEECCCc-----EEEe---CCC--cEEEeceEEee
Q 011700           83 EHGIELVLGTRVKSADVRRK-----TLVT---ATG--ETISYKILIIA  120 (479)
Q Consensus        83 ~~gv~~~~~~~v~~i~~~~~-----~v~~---~~g--~~~~~d~lviA  120 (479)
                      ..+|+++.++++..+.-+++     .+.+   .++  +++..|.|+||
T Consensus        82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa  129 (130)
T d1vdca2          82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA  129 (130)
T ss_dssp             CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred             CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence            56799999999988875532     2332   223  57899999887

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.89  E-value=7.7e-05  Score=66.11  Aligned_cols=35  Identities=20%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCC---CcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPP---GELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~---~~V~lie~~~   40 (479)
                      +|+|||||++|+++|++|+++|.++   .+++++++..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            7999999999999999999999864   2466776654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.75  E-value=0.0022  Score=56.10  Aligned_cols=97  Identities=15%  Similarity=0.153  Sum_probs=65.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc------------------------------------------c-
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------------------------------------R-  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------~-  200 (479)
                      .++|||+|+.|+.+|..+++.|.+|.++++.+....                                          . 
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~   84 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT   84 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence            489999999999999999999999999985432100                                          0 


Q ss_pred             -cCC------------HHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEEEeCCCc--EEeccEEEEecCCCCChh
Q 011700          201 -LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       201 -~~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~Vi~a~G~~p~~~  265 (479)
                       ..+            ..+.+.+...+++.+|+++.+..  .+..  .. ...+...+++  .+.++.+++++|.+|...
T Consensus        85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~--~~~~--~~-~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~  159 (235)
T d1h6va1          85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG--KFIG--PH-KIMATNNKGKEKVYSAERFLIATGERPRYL  159 (235)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE--EEEE--TT-EEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE--eecc--cc-ceecccccccccccccccceeecCCCceeE
Confidence             001            01222344567778999987753  2322  22 2345555554  588999999999998764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.74  E-value=0.0032  Score=47.85  Aligned_cols=75  Identities=15%  Similarity=0.109  Sum_probs=50.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCcccccccCCCCCCCCCCcccccCCcccCCCHhHHHH
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVAPYERPALSKGYLLPEAPARLPSFHTCVGANEERLTPKWYNE   83 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (479)
                      .++|+|||+|.+|+-.|.+|++...+   ++++.+.+....                 .                    .
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~~~~-----------------~--------------------~   71 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGGGDI-----------------Q--------------------N   71 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTCCSC-----------------B--------------------C
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCcccc-----------------c--------------------c
Confidence            57899999999999999999987655   455444321000                 0                    0


Q ss_pred             cCcEEEeCceEEEEECCCcEEEeCCCcEEE-eceEEee
Q 011700           84 HGIELVLGTRVKSADVRRKTLVTATGETIS-YKILIIA  120 (479)
Q Consensus        84 ~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~-~d~lviA  120 (479)
                      .++... . .+..++.+.+++.+.+|..+. .|++|+|
T Consensus        72 ~~~~~~-~-~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C  107 (107)
T d2gv8a2          72 ESLQQV-P-EITKFDPTTREIYLKGGKVLSNIDRVIYC  107 (107)
T ss_dssp             SSEEEE-C-CEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred             ccceec-C-CeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence            011222 1 456677888899999998876 6999875

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.61  E-value=0.0037  Score=50.14  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=70.1

Q ss_pred             cCHHHHHHHHHHHhcCC-CCCEEEEC-CC-----hHHHHH----HHHHhhCC--CeEEEEeecCcccc-ccCCHHHHHHH
Q 011700          145 RDLADANRLVNVMKSCS-GGNAVVIG-GG-----YIGMEC----AASLVINK--INVTMVFPEAHCMA-RLFTPKIASYY  210 (479)
Q Consensus       145 ~~~~~~~~l~~~l~~~~-~~~vvVIG-gG-----~~g~E~----A~~l~~~g--~~Vtlv~~~~~~l~-~~~~~~~~~~~  210 (479)
                      ....+..+|++.+++++ +.++++.- +.     ....|+    +..|+++|  .++.++...+.... ..+.+.+.+.+
T Consensus        15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~   94 (141)
T d1fcda2          15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY   94 (141)
T ss_dssp             SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence            34466788888898875 55776642 22     233444    44455555  46777665543211 11235566777


Q ss_pred             HHHHHhCCcEEEcCCc--eEEEEEcCCCcEEEEEeCCCcEEeccEEEEec
Q 011700          211 EEYYKSKGVKFVKGTV--LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI  258 (479)
Q Consensus       211 ~~~l~~~GV~i~~~~~--v~~i~~~~~g~v~~v~~~~g~~i~~D~Vi~a~  258 (479)
                      .+.++++||+++.+..  +.+++.  ..+  .+.+.+|+++++|++.+..
T Consensus        95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2          95 GFGTENAMIEWHPGPDSAVVKVDG--GEM--MVETAFGDEFKADVINLIP  140 (141)
T ss_dssp             CSTTSSCSEEEECSSTTCEEEEEE--TTT--EEEETTCCEEECSEEEECC
T ss_pred             HHHHHhcCceeeecCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeCC
Confidence            7778899999998765  555554  232  4678899999999988753

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.52  E-value=0.023  Score=52.52  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             CCEEEECCChHHHHHHHHHhh----CCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVI----NKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~----~g~~Vtlv~~~  194 (479)
                      -.|+|||+|+.|+-.|..+++    .|.+|.++++.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            369999999999888877754    69999999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.22  E-value=0.0019  Score=59.53  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      .|+++|||+|++|+-+|..|++.|.+|+|+++++++-.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            58999999999999999999999999999999987654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.002  Score=59.37  Aligned_cols=39  Identities=23%  Similarity=0.387  Sum_probs=34.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      +..+|+|||+|..|+-+|..|++.|.+|+|+++++++-.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG   42 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG   42 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence            356799999999999999999999999999999877643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0029  Score=46.79  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++|+|+|.|-+|+++|..|.++|.+   |++.|..+
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~~   38 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRM   38 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCCc
Confidence            56899999999999999999999987   89998874

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.02  E-value=0.0023  Score=57.75  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=32.0

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      +|+|||+|+.|+.+|..|++.|.+|+|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            6999999999999999999999999999998765

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.91  E-value=0.0035  Score=55.33  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .++|+|||+|..|+-+|..|+++|.+|+|+++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            578999999999999999999999999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.60  E-value=0.021  Score=43.51  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++++|||+|.+|..-+..|.+.|.+|+++.+.
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4799999999999999999999999999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0053  Score=49.76  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++++|||||.+|.+-+..|.+.|.+||++.+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5899999999999999999999999999999754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.40  E-value=0.0081  Score=49.83  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=30.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .-+|+|||+|.+|+.||..+.++|..   |+++|.++
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~---V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCE---EEEEeccH
Confidence            46899999999999999999999886   99999875

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.37  E-value=0.026  Score=46.62  Aligned_cols=124  Identities=18%  Similarity=0.197  Sum_probs=69.2

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC--ceEEEEEcCCCcE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT--VLSSFDVDSNGKV  238 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~--~v~~i~~~~~g~v  238 (479)
                      +|.+|+|+|+|..|+..+....++|.+|++++.+..-             .+++++.+-+++.-.  .....+. ..+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~-------------~~~l~~l~~~~i~~~~~~~~~~~~-~~gyA   93 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAT-------------KEQVESLGGKFITVDDEAMKTAET-AGGYA   93 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT-------------HHHHHHTTCEECCC----------------
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHH-------------HHHHHHhhcceEEEeccccccccc-cccch
Confidence            5789999999999999999999999999999876432             234556666655311  1111111 11111


Q ss_pred             EEE--EeCCC-------cEEeccEEEEe---cCCCCChhhhhccccc-ccCcEEEcC------cccCCCCC-eEEEeeec
Q 011700          239 VAV--NLRDG-------NRLPTDMVVVG---IGIRPNTSLFEGQLTL-EKGGIKVTG------RLQSSNSS-VYAVGDVA  298 (479)
Q Consensus       239 ~~v--~~~~g-------~~i~~D~Vi~a---~G~~p~~~l~~~~~~~-~~g~i~Vd~------~l~t~~~~-IyA~GD~~  298 (479)
                      ..+  .+...       ..-++|.||-+   .|.+++.-+-+.-+.. ..|.+.||=      ..+|+.|+ +|-.-++.
T Consensus        94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~  173 (183)
T d1l7da1          94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK  173 (183)
T ss_dssp             --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred             hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence            000  01110       01358988866   3555443333333433 778888882      35676654 66555544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.35  E-value=0.0084  Score=49.01  Aligned_cols=34  Identities=29%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .-+|+|||+|.+|+.|+..+.+.|..   |+++|.++
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~---V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCE---EEEEeCcH
Confidence            56899999999999999999999876   99999874

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.30  E-value=0.0097  Score=47.86  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=33.9

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |.++++|.|||+|.-|.++|..|+..+. ..+++|+|.++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence            6678899999999999999999999876 35799999763

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0064  Score=55.40  Aligned_cols=37  Identities=22%  Similarity=0.389  Sum_probs=33.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR  200 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  200 (479)
                      .++|||+|++|+-+|..|++.|.+|+|+++++++-..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~   39 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN   39 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence            5899999999999999999999999999999887554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.05  E-value=0.0079  Score=49.81  Aligned_cols=34  Identities=12%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++|+|||+|..|..+|.+|.+.|++   |+|++++.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCh
Confidence            36899999999999999999999886   99999885

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.01  E-value=0.0091  Score=47.07  Aligned_cols=32  Identities=19%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +|+|+|+|.-|...|..|.+.|++   |+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC---cceecCCh
Confidence            799999999999999999998887   99999984

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.01  E-value=0.039  Score=44.87  Aligned_cols=114  Identities=20%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      +|.+++|+|+|..|+..+....++|.+|++++.+         ++-.+.++..+.. .++.....+ ..+          
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~---------~~~l~~l~~~~~~-~~~~~~~~~-~~l----------   89 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN---------VERLSYLETLFGS-RVELLYSNS-AEI----------   89 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHGG-GSEEEECCH-HHH----------
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc---------HHHHHHHHHhhcc-cceeehhhh-hhH----------
Confidence            5889999999999999999999999999999754         2333344444332 233221111 000          


Q ss_pred             EEeCCCcEEeccEEEEe---cCCCCChhhhhccccc-ccCcEEEcC------cccCCCC-----CeEEEeeecc
Q 011700          241 VNLRDGNRLPTDMVVVG---IGIRPNTSLFEGQLTL-EKGGIKVTG------RLQSSNS-----SVYAVGDVAA  299 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a---~G~~p~~~l~~~~~~~-~~g~i~Vd~------~l~t~~~-----~IyA~GD~~~  299 (479)
                          ....-++|.||-+   .|.+++.-+-+.-+.. ..|.+.||=      ..+|+.|     -+|-.-++.-
T Consensus        90 ----~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets~ptt~~~p~~~~~gV~~  159 (168)
T d1pjca1          90 ----ETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVH  159 (168)
T ss_dssp             ----HHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEE
T ss_pred             ----HHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccccCCCCcccCCeEEECCEEE
Confidence                0012357888776   4555554433444443 778888882      2454333     2666655543

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0098  Score=54.78  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=31.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            3899999999999999999999999999987765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.82  E-value=0.011  Score=49.36  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++.|||+|..|+..|..|+++|++   |.++++.+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCE---EEEEECCH
Confidence            6899999999999999999999986   89998864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.78  E-value=0.013  Score=51.45  Aligned_cols=34  Identities=26%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            5899999999999999999999999999988654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.76  E-value=0.013  Score=51.75  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            47999999999999999999999999999998764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.69  E-value=0.0096  Score=55.03  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             CEEEECCChHHHHHHHHHh-----hCCCeEEEEeecCccc
Q 011700          164 NAVVIGGGYIGMECAASLV-----INKINVTMVFPEAHCM  198 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~-----~~g~~Vtlv~~~~~~l  198 (479)
                      .|+|||+|++|+-+|..|+     +.|.+|+|+++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            5999999999999999996     5799999999987654

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.021  Score=41.86  Aligned_cols=79  Identities=19%  Similarity=0.317  Sum_probs=54.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEE
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA  240 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~  240 (479)
                      .+|+++|+|.|-+|+.+|..|.+.|.+|++.+.++.....           +.+ +.++.++.+..              
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~--------------   57 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL--------------   57 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC--------------
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc--------------
Confidence            5899999999999999999999999999999875432110           111 12333332210              


Q ss_pred             EEeCCCcEEeccEEEEecCCCCChhhhh
Q 011700          241 VNLRDGNRLPTDMVVVGIGIRPNTSLFE  268 (479)
Q Consensus       241 v~~~~g~~i~~D~Vi~a~G~~p~~~l~~  268 (479)
                         .....-.+|.|++++|..++.+++.
T Consensus        58 ---~~~~~~~~d~vi~SPGi~~~~~~~~   82 (93)
T d2jfga1          58 ---NDEWLMAADLIVASPGIALAHPSLS   82 (93)
T ss_dssp             ---CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred             ---chhhhccCCEEEECCCCCCCCHHHH
Confidence               0001235799999999999887654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.52  E-value=0.013  Score=46.08  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++++|||.|.-|...|..|.+.|++   |+++|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCcH
Confidence            4799999999999999999999988   89999884

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.51  E-value=0.062  Score=46.07  Aligned_cols=35  Identities=14%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.++|+|||+|..|.-+|..+++.+.+   ++++-+.+
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcc---cccccccc
Confidence            357999999999999999999998765   55555443

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.47  E-value=0.0089  Score=48.31  Aligned_cols=34  Identities=18%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++++|||||..|+.-|..|.+.|.+   |+||.++.
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~~   46 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL   46 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCC
Confidence            57899999999999999999998876   99998763

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.42  E-value=0.018  Score=49.77  Aligned_cols=34  Identities=26%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .++|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4899999999999999999999999999987654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.34  E-value=0.017  Score=47.68  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .|+++|||+|.+|..+|..|.+.|.+|+++.|.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~   34 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   34 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            589999999999999999999999999999876

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.28  E-value=0.024  Score=45.90  Aligned_cols=38  Identities=13%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |.+++++.|||+|.-|.++|..|...+..  +++|+|.++
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence            45678999999999999999988887763  699998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.018  Score=48.57  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.8

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCcccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA  199 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  199 (479)
                      -++|.|||+|.+|.-+|..++..|.+|+++++.+..+.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            47999999999999999999999999999988765443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.13  E-value=0.027  Score=42.89  Aligned_cols=35  Identities=29%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.++|+|||+|..|..-|..|.+.|.+   |+++++..
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence            357999999999999999999998876   89998764

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.027  Score=45.88  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|+|||+|.-|...|..|++.|++   |+++++.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHE---VQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCc---eEEEEcCH
Confidence            3899999999999999999999987   99998875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.54  E-value=0.023  Score=47.58  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM  198 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  198 (479)
                      -+++.|||+|.+|..+|..++..|.+|+++++.+.-+
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l   40 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI   40 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence            5789999999999999999999999999998875543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.52  E-value=0.029  Score=49.97  Aligned_cols=32  Identities=22%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.40  E-value=0.029  Score=46.45  Aligned_cols=32  Identities=25%  Similarity=0.146  Sum_probs=30.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      |++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            78999999999999999999999999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=92.92  E-value=0.03  Score=47.01  Aligned_cols=37  Identities=16%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             CCCcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ||...+++|||+|.-|.+.|..|++.|++   |++..+++
T Consensus         4 ~~~m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~~   40 (189)
T d1n1ea2           4 LLYLNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE   40 (189)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSCH
T ss_pred             cceeceEEEECCCHHHHHHHHHHHHcCCe---EEEEEecH
Confidence            45557899999999999999999998776   89987763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.047  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      ||+|||+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            689999999999999999999999999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.27  E-value=0.18  Score=39.02  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=28.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      +|+|+|+|.+|..++..|.+.|.+|+++++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d   32 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   32 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence            5899999999999999999999999999753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.23  E-value=0.058  Score=48.66  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .|+|||+|..|+-+|..|++.|.+|+|+++.+.
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV   50 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            699999999999999999999999999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.00  E-value=0.06  Score=45.53  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.|||.|.-|+..|..|++.|++   |+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~---V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE---VIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc---EEEEeCCH
Confidence            799999999999999999999987   89999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.92  E-value=0.084  Score=42.15  Aligned_cols=36  Identities=17%  Similarity=0.422  Sum_probs=31.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|.|||+|.-|.++|..|...+. ..+++|+|..+
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~   41 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE   41 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence            4689999999999999999999876 45799998763

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.68  E-value=0.077  Score=44.45  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|..-|..+++.|++   |+++|.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc---EEEEECCh
Confidence            6899999999999999999999987   89999885

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=91.53  E-value=0.069  Score=41.66  Aligned_cols=32  Identities=25%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      |+++|+|.|.+|..+|..|.+.|.+|++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            57999999999999999999999999999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.25  E-value=0.084  Score=49.41  Aligned_cols=34  Identities=29%  Similarity=0.504  Sum_probs=31.0

Q ss_pred             CEEEECCChHHHHHHHHHhh------CCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVI------NKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~------~g~~Vtlv~~~~~~  197 (479)
                      .|+|||+|+.|+-+|..|++      .|.+|.|+++...+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            69999999999999999987      79999999998654

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.20  E-value=0.087  Score=48.70  Aligned_cols=33  Identities=30%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .|+|||+|+.|+-+|..|++.|.+|.++++..+
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            389999999999999999999999999999754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.15  E-value=0.084  Score=47.93  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      -.|+|||+|..|+-+|..|++.|.+|.++++.+.
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3699999999999999999999999999998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.08  E-value=0.09  Score=43.77  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|..-|..+++.|++   |+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP---ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence            5799999999999999999999988   89999875

>d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.18  Score=38.18  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=33.8

Q ss_pred             EEEccCCEEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHh
Q 011700          375 AYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELE  416 (479)
Q Consensus       375 ~~~~~~~~i~G~~~~g~~~~e~~~~~~~i~~~~~~~dl~~~~  416 (479)
                      .|++++++|+|+.+++ .-..+.....+|+.+...+||.++.
T Consensus        88 IFYLrd~~VVGVLLWN-vFnrm~iAR~iI~~~~~~~DlnEvA  128 (131)
T d1m6ia3          88 IFYLRDKVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEVA  128 (131)
T ss_dssp             EEEEETTEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred             EEEecCCcEEEEEEec-ccCccHHHHHHHHcCCccchHHHHH
Confidence            4677999999999998 2346777888999999999998764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.90  E-value=0.15  Score=40.19  Aligned_cols=34  Identities=15%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +|.|||+|.-|.+.|..|+..+. ..+++|+|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence            79999999999999999998775 35799999774

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=90.80  E-value=0.18  Score=40.65  Aligned_cols=36  Identities=17%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.+|.|||+|.-|.++|..|..+++ ..++.|+|..+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~   55 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE   55 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            4799999999999999999999877 45799998763

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=90.76  E-value=0.097  Score=48.45  Aligned_cols=33  Identities=33%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .++|||+|+.|+-+|..|++.|.+|+++++..+
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   41 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   41 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            489999999999999999999999999998743

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.70  E-value=0.14  Score=40.68  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++|.|||+|.-|.++|..|..++. ..++.|+|.++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence            589999999999999999998876 35799998763

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.66  E-value=0.17  Score=40.79  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|.|||+|.-|.++|+.|...++ ..++.|+|..+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~   54 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGL-ADELALVDADT   54 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence            4589999999999999999998876 45799998763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.33  E-value=0.19  Score=39.71  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=30.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|.++|..|..+++ ..+++|+|.++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence            589999999999999999998876 45799998663

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.12  E-value=0.13  Score=47.34  Aligned_cols=34  Identities=29%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCcc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC  197 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  197 (479)
                      .++|||+|..|+-+|..|++.|.+|.+++++...
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            4899999999999999999999999999987543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=90.06  E-value=0.17  Score=41.22  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      ++++|+|||+|-++-+++..|.+.|.+.  |+|+.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~--I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEK--LKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCC--EEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCE--EEEeccc
Confidence            4578999999999999999999988754  8888766

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=0.39  Score=36.32  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             CcCeEEEECCc-----------hHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGG-----------VAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG-----------~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ...+|+|||+|           +++..|+..|++.|++   ++++..+|.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~---~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE---TIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE---EEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe---EEEEecChh
Confidence            45789999998           4889999999999988   899998875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.49  Score=37.40  Aligned_cols=55  Identities=15%  Similarity=0.098  Sum_probs=40.7

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCC
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGT  225 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~  225 (479)
                      ..+++|+|.|..|..++..|.+.|.+|++++..+         +......+.+...|+.++.+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~---------~~~~~~~~~~~~~~~~vi~Gd   57 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP---------EDDIKQLEQRLGDNADVIPGD   57 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC---------HHHHHHHHHHHCTTCEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc---------hhHHHHHHHhhcCCcEEEEcc
Confidence            3579999999999999999999999999987542         222223334456688887653

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.82  E-value=0.12  Score=46.97  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.67  E-value=0.22  Score=39.26  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|.++|..|...++ ..++.|+|..+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccC
Confidence            489999999999999999999876 45799999774

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.67  E-value=0.11  Score=46.99  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~   53 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF   53 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.55  E-value=0.25  Score=37.36  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CCCEEEECCCh-----------HHHHHHHHHhhCCCeEEEEeecCc
Q 011700          162 GGNAVVIGGGY-----------IGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       162 ~~~vvVIGgG~-----------~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      .++++|+|+|+           .+..++..|++.|.++.++...|.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            57899999984           577889999999999999987753

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.38  E-value=0.21  Score=39.43  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=29.6

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++.|||+|--|.+.|..|+.++. ..+++|+|.++
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence            389999999999999999988775 45799998763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.09  E-value=0.44  Score=42.11  Aligned_cols=58  Identities=19%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             CCCEEEECC-ChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcC
Q 011700          162 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKG  224 (479)
Q Consensus       162 ~~~vvVIGg-G~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~  224 (479)
                      .++|+|+|+ |++|..++..|.+.|.+|+.+.|.+..    .+....+ ....+...+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~~~-~~~~~~~~~v~~v~~   61 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVV----SNIDKVQ-MLLYFKQLGAKLIEA   61 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCS----SCHHHHH-HHHHHHTTTCEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcc----cchhHHH-HHhhhccCCcEEEEe
Confidence            467999996 999999999999999999999886542    2333222 234566778888754

>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.96  E-value=0.45  Score=30.18  Aligned_cols=44  Identities=14%  Similarity=0.204  Sum_probs=28.1

Q ss_pred             EEEeecCcceEeecCCCceEEEEccCCCCceEEEEccCCEEEEEEEeCC
Q 011700          343 FYSRVFTLSWQFYGDNVGEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGG  391 (479)
Q Consensus       343 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~g~  391 (479)
                      .+..+.+++++.+|...++-.-..+.     .+.+.++++|+|+.++++
T Consensus        11 s~FKfgd~~iAiiG~~~g~G~Wid~~-----tK~Fy~d~KiiGaVV~~D   54 (62)
T d1xhca3          11 TVFKFGKLQIAIIGNTKGEGKWIEDN-----TKVFYENGKIIGAVVFND   54 (62)
T ss_dssp             EEEEETTEEEEEEECCSSCEEEEETT-----EEEEC-----CEEEEESC
T ss_pred             eeeeeCCccEEEEEeccCcceeeccc-----ceeeeeCCcEEEEEEehh
Confidence            45578899999999877665544322     355668899999999996

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.83  E-value=0.15  Score=35.50  Aligned_cols=34  Identities=9%  Similarity=0.078  Sum_probs=31.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.|-|||||-=|.+.+....++|++   +.++++++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCCCC
Confidence            5899999999999999999999998   899998864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.80  E-value=0.21  Score=39.54  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             eEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +|.|||+ |.-|.++|..|+.++. ..++.|+|..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence            7999996 9999999999998775 34699998763

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.23  Score=38.08  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             cCeEEEECCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGV-----------AAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~-----------aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      ..+|+|||+||           ++..|+..|++.|++   +.++..+|.
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~---~iliN~NP~   52 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR---VINVNSNPA   52 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE---EEEECSCTT
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe---EEEecCchH
Confidence            47899999986           789999999999998   899998874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.27  Score=36.87  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPVA   42 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   42 (479)
                      .++|-|||||-=|...|..+.++|++   +.++|+++..
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~---v~v~d~~~~~   46 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE---VIAVDRYADA   46 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE---EEEEESSTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE---EEEEcCCCCC
Confidence            36899999999999999999999998   8999998753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.59  E-value=0.25  Score=38.74  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.|||+|.-|.++|..|..++. ..+++|+|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence            89999999999999999988776 44799998663

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=0.24  Score=40.32  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=29.4

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++|+|+|+|-++-+++..|.+.|.+   |+++.++.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCA---VTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceE---EEeccchH
Confidence            47899999999999999999998764   89887763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.52  E-value=0.23  Score=40.09  Aligned_cols=32  Identities=25%  Similarity=0.267  Sum_probs=28.6

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.|||.|.-|.+.|..|.+.|++   |+++|+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~---V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY---LIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE---EEEEECCc
Confidence            799999999999999999998886   88887763

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=88.35  E-value=0.24  Score=39.02  Aligned_cols=34  Identities=12%  Similarity=0.207  Sum_probs=29.2

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.|||+|.-|.++|..|+..+..  ++.++|..+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence            5899999999999999999887763  599998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.25  E-value=0.2  Score=41.26  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      ++|.|||+|.-|.+.|..|++.|++   |++..+.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~---V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNE---VRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence            3899999999999999999998876   8888653

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=88.19  E-value=0.17  Score=39.96  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             HHHcCcEEEeCc--eEEEEECCCcEEEeCCCcEEEeceEEe
Q 011700           81 YNEHGIELVLGT--RVKSADVRRKTLVTATGETISYKILII  119 (479)
Q Consensus        81 ~~~~gv~~~~~~--~v~~i~~~~~~v~~~~g~~~~~d~lvi  119 (479)
                      +++.+|++..+.  .+..+|...+++.+.+|+++.||.+.+
T Consensus        98 ~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~v  138 (141)
T d1fcda2          98 TENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINL  138 (141)
T ss_dssp             TSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEE
T ss_pred             HHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEe
Confidence            346789999764  588899999999999999999999886

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.91  E-value=0.037  Score=47.82  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeE
Q 011700          164 NAVVIGGGYIGMECAASLVINKINV  188 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~V  188 (479)
                      +|+|||+|.+|+-.|..|++.|.+|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCc
Confidence            5999999999999999999988653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.87  E-value=0.35  Score=38.35  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=29.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -++||+|.|.-|...+..|.+.|.+   +++|+.++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~---v~vId~d~   36 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQN---VTVISNLP   36 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCC---EEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCC---EEEEeccc
Confidence            3699999999999999999998877   89998874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.24  Score=39.81  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=31.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+|+++|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d   56 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID   56 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence            6899999999999999999999999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.26  Score=39.94  Aligned_cols=35  Identities=11%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .-.|+|+|+|+-|+.++..+..+|..  +|+++|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence            35799999999999999988888874  388888774

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.73  E-value=0.26  Score=38.87  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=28.4

Q ss_pred             eEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            6 VYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         6 dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      +|+|||| |.-|.++|..|+.++. ..+++|+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence            7999996 9999999999998776 4579999875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.46  E-value=0.34  Score=38.48  Aligned_cols=35  Identities=17%  Similarity=0.305  Sum_probs=29.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +.+|.|||+|.-|.++|..|.+.+..  +++|+|.++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence            46899999999999999988887763  699999764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=87.35  E-value=0.32  Score=40.00  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=30.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .++++|||+|-+|-+++..|.+.|.+  +++++.+.+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~   52 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD   52 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence            46899999999999999999998865  488888764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.27  E-value=0.22  Score=34.63  Aligned_cols=34  Identities=24%  Similarity=0.119  Sum_probs=30.8

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      |+|.|+|+|-.|..++.+-.++|.++.++.+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5789999999999999999999999999987643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.00  E-value=0.38  Score=38.07  Aligned_cols=33  Identities=33%  Similarity=0.452  Sum_probs=29.8

Q ss_pred             CeEEEEC-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVG-GGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIG-gG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .+|.||| .|.-|.+.|..|.+.|++   |+++++.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYP---ISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCC---cEeccccc
Confidence            6899999 699999999999999987   89998764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.89  E-value=0.43  Score=35.68  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=31.5

Q ss_pred             CCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          162 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       162 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      ..++.|+|||..|..++.+..++|.++.++++.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            35799999999999999999999999999987743

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.73  E-value=0.76  Score=40.10  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=43.1

Q ss_pred             CCCEEEECC-ChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEc
Q 011700          162 GGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVK  223 (479)
Q Consensus       162 ~~~vvVIGg-G~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~  223 (479)
                      .+||+|+|+ |++|-.++..|.+.|.+|+.+.|.+....   .++.... .+.+...+++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~   61 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence            478999996 99999999999999999999998765432   3333333 3445667777764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.61  E-value=0.36  Score=40.39  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.1

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      ++.|||.|++|+-+|..|++.|.+|+.++..+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58899999999999999999999999987653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=86.61  E-value=0.22  Score=43.27  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEPV   41 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~~   41 (479)
                      +.+|+|||.|--|..+|..|++.|..  +++++|.+..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence            46899999999999999999999965  5999998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.39  Score=40.10  Aligned_cols=35  Identities=11%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             CcCeEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..++|+|+|| |.-|...+.+|.++|++   |+++.+++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~~   37 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDS   37 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcCh
Confidence            3478999996 99999999999999886   89998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.75  E-value=0.38  Score=38.63  Aligned_cols=34  Identities=18%  Similarity=0.058  Sum_probs=27.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+|+|+|+|+.|+.++.-++.+|.+   |++++.++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~---Vi~~~~~~   61 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLH---VAAIDIDD   61 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCc---cceecchh
Confidence            35799999999999999888777754   88887764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=85.72  E-value=0.21  Score=41.51  Aligned_cols=32  Identities=28%  Similarity=0.280  Sum_probs=29.3

Q ss_pred             CCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          163 GNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       163 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ++++|+|+|..|.-+|..|++.|.+|+++.|.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            57999999999999999999999999998754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.68  E-value=0.57  Score=37.48  Aligned_cols=39  Identities=26%  Similarity=0.312  Sum_probs=32.6

Q ss_pred             HHhcCCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeec
Q 011700          156 VMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE  194 (479)
Q Consensus       156 ~l~~~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~  194 (479)
                      .+.....++++|||+|.+|..++..|...|. ++++..|.
T Consensus        18 ~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          18 ELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             HhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            3444468999999999999999999999987 68888765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.53  E-value=0.28  Score=40.16  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             eEEEE-CCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIV-GGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvII-GgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.|| |+|.-|.+.|..|++.|++   |++.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence            69999 6699999999999999987   89998874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=85.44  E-value=0.32  Score=39.27  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=27.8

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -.|+|+|+|+-|+.++..++..|.+   |++++.++
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~   60 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSP   60 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred             CEEEEEcccccchhhHhhHhhhccc---ccccchHH
Confidence            5799999999999999888877765   88888774

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.38  E-value=0.3  Score=40.59  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=26.9

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            6 VYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         6 dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +|.|||.|.-|+..|..+++ |++   |+.+|.++
T Consensus         2 kI~ViGlG~vGl~~a~~~a~-g~~---V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLSL-QNE---VTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSE---EEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHHC-CCc---EEEEECCH
Confidence            79999999999999987764 876   89998875

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=85.26  E-value=0.44  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.0

Q ss_pred             CCCEEEEC-CChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          162 GGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       162 ~~~vvVIG-gG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      -+++.||| .|.+|--+|..|.+.|.+|+++.+..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 69999999999999999999998754

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.72  Score=37.20  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=31.0

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+++++|+|+|-.+--++..|.+.|.+++++.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            5789999999999999999999999999998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.92  E-value=0.41  Score=38.66  Aligned_cols=34  Identities=24%  Similarity=0.161  Sum_probs=27.8

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ...|+|+|+|+-|+.++..++..|.+   |++++.++
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~~   61 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRSS   61 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSS
T ss_pred             CCEEEEECCCCcchhHHHHhhhcccc---ccccccch
Confidence            35799999999999999877777875   78887764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.87  E-value=1.2  Score=31.57  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=51.3

Q ss_pred             CCEEEECCChHHH-HHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEEEcCCceEEEEEcCCCcEEEE
Q 011700          163 GNAVVIGGGYIGM-ECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV  241 (479)
Q Consensus       163 ~~vvVIGgG~~g~-E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~g~v~~v  241 (479)
                      .|+-+||-|=+|+ -+|..|.+.|.+|+-.++.+       .+     ..+.|++.|+++..+.....+           
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~t~~L~~~Gi~i~~gh~~~~i-----------   58 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TE-----RTAYLRKLGIPIFVPHSADNW-----------   58 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCCEESSCCTTSC-----------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Ch-----hHHHHHHCCCeEEeeeccccc-----------
Confidence            3677888877777 46999999999999886542       22     233578899999876532111           


Q ss_pred             EeCCCcEEeccEEEEecCCCCChh
Q 011700          242 NLRDGNRLPTDMVVVGIGIRPNTS  265 (479)
Q Consensus       242 ~~~~g~~i~~D~Vi~a~G~~p~~~  265 (479)
                             -.+|.||+..+...+..
T Consensus        59 -------~~~d~vV~SsAI~~~np   75 (89)
T d1j6ua1          59 -------YDPDLVIKTPAVRDDNP   75 (89)
T ss_dssp             -------CCCSEEEECTTCCTTCH
T ss_pred             -------CCCCEEEEecCcCCCCH
Confidence                   23689999988876654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.68  E-value=0.46  Score=39.47  Aligned_cols=35  Identities=17%  Similarity=0.118  Sum_probs=27.7

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .-+|+|+|+|+.|+.++..+..+|..  +|++++..+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~~   60 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLNP   60 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhccc--ceeeecccc
Confidence            45799999999999999888777754  377777663

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.52  E-value=0.52  Score=38.31  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             cCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            4 AFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      .-.|+|+|+|+.|+.++..++..|.+.  |++++.++
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~--Vi~~d~~~   62 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGR--IIGVGSRP   62 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSC--EEEECCCH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccc--cccccchh
Confidence            357999999999999998888777643  88888764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=84.40  E-value=0.51  Score=37.79  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      ++.+++|||+|-.|-..+..|..+|.+  +++++.+.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence            357899999999999999999998875  37887665

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=84.38  E-value=0.47  Score=38.62  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=27.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -.|+|+|+|+-|+.++..+...|.+.  |++.|.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~--Vi~~d~~~   63 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASR--IIAIDING   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSE--EEEECSCG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCce--eeeeccch
Confidence            57999999999999999998888753  66776663

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.37  E-value=0.77  Score=37.78  Aligned_cols=35  Identities=31%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             CCCCEEEEC-CChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          161 SGGNAVVIG-GGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       161 ~~~~vvVIG-gG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .+|+++|.| +|-+|.++|..|.+.|.+|+++.|..
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            689999999 58999999999999999999988763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.35  E-value=0.67  Score=37.24  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      +++.|||.|.-|.+.|+.|.+.|.. .+|..+|+++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~-~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFK-GKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCC-SEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCC-eEEEEEECCh
Confidence            4799999999999999999998863 3577777763

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.23  E-value=0.15  Score=39.28  Aligned_cols=37  Identities=19%  Similarity=0.043  Sum_probs=26.5

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKR-GVPPGELCIISEEPV   41 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~-g~~~~~V~lie~~~~   41 (479)
                      ++++++|+|+|-+|.+.+.++.+. +++  -+.+||.++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~--iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFE--LRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEE--EEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcE--EEEEEeCchH
Confidence            568999999999999887765432 222  2678887753

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=84.14  E-value=0.42  Score=43.87  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .++|||+|..|+-+|..|++.|.+|.++++..
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            47999999999999999999999999999885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.07  E-value=0.38  Score=39.41  Aligned_cols=34  Identities=21%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -+|+|+|+|+-|+.++..+..+|.+  +|++++.++
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~   63 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP   63 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred             CEEEEECCCccchhheecccccccc--ccccccccc
Confidence            5799999999999999888888864  388888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=83.60  E-value=0.73  Score=37.36  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeec
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE  194 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~  194 (479)
                      .++++|+|+|+|.+|+-.++.+...|. +|..+.++
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            368899999999999999999998996 67777654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.52  E-value=0.4  Score=38.36  Aligned_cols=34  Identities=29%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .+|+++|+|-|.+|--+|..++.+|.+|++.+..
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~D   55 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEID   55 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSC
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecC
Confidence            6899999999999999999999999999998755

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.45  E-value=0.42  Score=39.00  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=27.9

Q ss_pred             CEEEE-CCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          164 NAVVI-GGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVI-GgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ++.|| |.|.+|..+|..|++.|.+|++..|+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            47888 66999999999999999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=0.79  Score=35.99  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=25.8

Q ss_pred             eEEEEC-CchHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 011700            6 VYVIVG-GGVAAGYAALEFTKR-GVPPGELCIISEE   39 (479)
Q Consensus         6 dvvIIG-gG~aGl~aA~~l~~~-g~~~~~V~lie~~   39 (479)
                      +|.||| +|.-|.+.|..|..+ +. ..++.++|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~   36 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence            899999 599999999887653 33 3469999865

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.86  E-value=0.58  Score=37.63  Aligned_cols=36  Identities=14%  Similarity=0.100  Sum_probs=31.5

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecCc
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH  196 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  196 (479)
                      ++++++|+|+|.+|+-.++.+...|.+|..+.+++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            678999999999999999888889999998877643

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=82.80  E-value=0.94  Score=36.39  Aligned_cols=34  Identities=12%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCC-eEEEEeec
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtlv~~~  194 (479)
                      +.++++|+|+|-.+--++..|.+.|. +++++.|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            56899999999999999999999995 78888765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.69  E-value=0.66  Score=42.28  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             CCCcCeEEEECC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            1 MGRAFVYVIVGG-GVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         1 M~~~~dvvIIGg-G~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      |++.++|+|.|| |.-|-..+..|.++|++   |++++...
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCC
Confidence            677899999996 99999999999998876   88887653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.62  E-value=0.46  Score=38.89  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      +|.|||+|..|.-+|..|++.|.+|+++.|.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5899999999999999999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=82.60  E-value=1  Score=35.97  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             CCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          160 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       160 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      .++++++|+|+|.+|+-.++.+...|.+|..++++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence            36789999999999999999999999999888754

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.35  E-value=0.63  Score=37.61  Aligned_cols=34  Identities=15%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -.|+|+|+|+.|+.++..++..+...  |+.++..+
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~--Vi~~~~~~   63 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKR--IIAVDLNP   63 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSE--EEEECSCG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhch--heeecchH
Confidence            45889999999999999999877653  77776663

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.22  E-value=0.69  Score=39.07  Aligned_cols=36  Identities=17%  Similarity=0.129  Sum_probs=31.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ++.++|+.|+|.||+..|..+.+.+.+.  +.++|+.-
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~--i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKN--VVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCE--EEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccc--eEeeccee
Confidence            4578999999999999999999888764  99998874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.13  E-value=0.64  Score=37.17  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             CEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          164 NAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       164 ~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ++.|||.|.+|.-+|..|.+.|.+|+.++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5889999999999999999999999988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.92  E-value=0.64  Score=37.81  Aligned_cols=34  Identities=15%  Similarity=0.099  Sum_probs=28.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      -.|+|+|+|+-|+.++..++..|..  +|+++|.++
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~   64 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNK   64 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcH
Confidence            3599999999999999999888854  388888774

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.87  E-value=0.81  Score=37.40  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=31.8

Q ss_pred             CCCCEEEECCChHHHHHHHHHhhCCCeEEEEeecC
Q 011700          161 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA  195 (479)
Q Consensus       161 ~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~~  195 (479)
                      .++++.|||.|.+|-++|..+..+|.+|..+.+.+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccc
Confidence            47899999999999999999999999999987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.60  E-value=1.1  Score=35.57  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=31.2

Q ss_pred             cCCCCCEEEECCChHHHHHHHHHhhCCCeEEEEeec
Q 011700          159 SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       159 ~~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      -.++++++|+|+|.+|+-.++.+...|.+|..+.+.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            346789999999999999999999999998888654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.39  E-value=0.54  Score=38.13  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=26.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      -+|+|+|+|+.|+.++.-+...|.+.  |.+.+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccce--eeeeccH
Confidence            57999999999999998888878763  5565554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=81.18  E-value=0.92  Score=35.42  Aligned_cols=33  Identities=18%  Similarity=0.342  Sum_probs=27.7

Q ss_pred             eEEEEC-CchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            6 VYVIVG-GGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         6 dvvIIG-gG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      +|.||| +|.-|.++|..|..++. ..++.|+|-.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence            799999 69999999999998876 3578888743

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.00  E-value=0.86  Score=43.39  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHhCCcEEEcCCceEEEEEc-CCCcEEEEEeCCCcEEeccEEEEecCCCCC
Q 011700          204 PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIRPN  263 (479)
Q Consensus       204 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~-~~g~v~~v~~~~g~~i~~D~Vi~a~G~~p~  263 (479)
                      -++.+.+-+...-.|-.+++++.|.++..+ +++++..+.+.+|+++.++.||.....-|.
T Consensus       376 gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~  436 (491)
T d1vg0a1         376 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE  436 (491)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred             chHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence            477777777777788889999999988764 456777888888999999999888766554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.90  E-value=1.8  Score=37.32  Aligned_cols=52  Identities=23%  Similarity=0.309  Sum_probs=38.9

Q ss_pred             CCCCEEEECC-ChHHHHHHHHHhhCCCeEEEEeecCccccccCCHHHHHHHHHHHHhCCcEE
Q 011700          161 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKF  221 (479)
Q Consensus       161 ~~~~vvVIGg-G~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i  221 (479)
                      .+|.++|.|+ +-+|.++|..|++.|.+|.+..|+         ++-.+.+.+.+++.|.++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~---------~~~l~~~~~~~~~~g~~~   56 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN---------REALEKAEASVREKGVEA   56 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence            5788888886 468999999999999999998764         333445566677776543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.89  Score=36.34  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             CcCeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011700            3 RAFVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEEP   40 (479)
Q Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~~   40 (479)
                      ..+.++|||-|.-|-.+|..++..|.+   |++.|..|
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~---V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGAR---VIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCe---eEeeeccc
Confidence            457899999999999999999999887   89988875

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=1.6  Score=34.94  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             CCCCEEEECC-ChHHHHHHHHHhhCCCeEEEEeec
Q 011700          161 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE  194 (479)
Q Consensus       161 ~~~~vvVIGg-G~~g~E~A~~l~~~g~~Vtlv~~~  194 (479)
                      ++++|+|.|+ |.+|.-..+.+...|.+|..+.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccc
Confidence            5788999995 999999888888899998877643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=80.55  E-value=0.7  Score=37.46  Aligned_cols=33  Identities=12%  Similarity=0.074  Sum_probs=27.5

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      -.|+|+|+|+-|+.++..+...|...  |+++|.+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~--Vi~~d~~   61 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASR--IIGVGTH   61 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSE--EEEECSC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCce--eeccCCh
Confidence            46999999999999999998888653  7777766

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=80.34  E-value=0.76  Score=36.86  Aligned_cols=32  Identities=13%  Similarity=-0.003  Sum_probs=25.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011700            5 FVYVIVGGGVAAGYAALEFTKRGVPPGELCIISEE   39 (479)
Q Consensus         5 ~dvvIIGgG~aGl~aA~~l~~~g~~~~~V~lie~~   39 (479)
                      ..|+|+|+|+.|+.++..++..|.+   +++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~---~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAH---VVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhccccc---chhhccc
Confidence            5799999999999999888777776   5666665